etrop commited on
Commit
6292cb9
1 Parent(s): 06cc42b
Files changed (1) hide show
  1. agro-nt-tasks.py +9 -38
agro-nt-tasks.py CHANGED
@@ -71,22 +71,8 @@ _TASK_INFO = {'poly_a':{'type': 'binary', 'val_set':False},
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  'splicing':{'type': 'binary', 'val_set':False},
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  'lncrna':{'type': 'binary', 'val_set':False},
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  'promoter_strength': {'type': 'regression', 'val_set': True},
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- 'gene_exp':{'type':'multi_regression','val_set':True,
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- 'num_labels':
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- {'arabidopsis_thaliana': 56,
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- 'glycine_max': 14,
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- 'zea_mays': 23,
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- 'solanum_lycopersicum': 10,
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- 'oryza_sativa': 7}},
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- 'chromatin_access':{'type':'multi_label','val_set':True,
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- 'num_labels':
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- {'arabidopis_thaliana': 19,
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- 'sorghum_bicolor': 14,
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- 'oryza_sativa_ZS97_RS2': 15,
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- 'oryza_sativa_MH63_RS2': 15,
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- 'zea_mays': 19,
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- 'brachypodium_distachyon': 9,
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- 'setaria_italica': 9}}
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  }
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  class AgroNtTasksConfig(datasets.BuilderConfig):
@@ -122,32 +108,17 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
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  def _info(self):
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  if self.config.task_type == 'binary':
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- features = datasets.Features(
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- {
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- "sequence": datasets.Value("string"),
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- "name": datasets.Value("string"),
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- "label": datasets.Value("int8"),
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- }
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- )
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  elif self.config.task_type == 'regression':
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- features = datasets.Features(
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- {
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- "sequence": datasets.Value("string"),
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- "name": datasets.Value("string"),
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- "label": datasets.Value("float32"),
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- }
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- )
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-
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  elif self.config.task_type == 'multi_regression':
 
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- num_labels = _TASK_INFO[self.config.task]['num_labels'][self.config.sub_task]
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-
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- features = datasets.Features({
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- "sequence": datasets.Value("string"),
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- "name": datasets.Value("string"),
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- "labels": [datasets.Value("float32")]})
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-
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  return datasets.DatasetInfo(
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  # This is the description that will appear on the datasets page.
 
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  'splicing':{'type': 'binary', 'val_set':False},
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  'lncrna':{'type': 'binary', 'val_set':False},
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  'promoter_strength': {'type': 'regression', 'val_set': True},
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+ 'gene_exp':{'type':'multi_regression','val_set':True},
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+ 'chromatin_access':{'type':'multi_label','val_set':True}
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  }
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  class AgroNtTasksConfig(datasets.BuilderConfig):
 
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  def _info(self):
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+ feature_dit = {"sequence": datasets.Value("string"),
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+ "name": datasets.Value("string")}
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+
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  if self.config.task_type == 'binary':
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+ feature_dit["label"] = datasets.Value("int8")
 
 
 
 
 
 
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  elif self.config.task_type == 'regression':
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+ feature_dit["label"] = datasets.Value("float32")
 
 
 
 
 
 
 
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  elif self.config.task_type == 'multi_regression':
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+ feature_dit['labels'] = [datasets.Value("float32")]
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+ features = datasets.Features(feature_dit)
 
 
 
 
 
 
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  return datasets.DatasetInfo(
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  # This is the description that will appear on the datasets page.