JavierMenRev
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Browse files- .gitattributes +3 -0
- Figures/Fig2_panela.txt +37 -0
- Figures/Fig2_panelb1.txt +0 -0
- Figures/Fig2_panelb2.txt +0 -0
- Figures/Fig2_panelbc.txt +21 -0
- Figures/Fig2_paneld1.txt +3 -0
- Figures/Fig2_paneld2.txt +3 -0
- Figures/Fig2_panele.txt +0 -0
- Figures/Fig2_panelf1.txt +0 -0
- Figures/Fig2_panelf2.txt +0 -0
- Figures/Fig3_panela.txt +0 -0
- Figures/Fig3_panelb.txt +0 -0
- Figures/Fig3_panelc.txt +0 -0
- Figures/Fig3_paneld.txt +0 -0
- Figures/Fig3_panele.txt +13 -0
- Figures/Fig3_panelf.txt +13 -0
- Figures/Fig4_panela.txt +0 -0
- Figures/Fig4_panelb.txt +191 -0
- Figures/Fig5_panela.txt +3 -0
- Figures/Fig5_panelb.txt +0 -0
- Figures/Fig5_panelc.txt +0 -0
- Figures/Fig5_paneld.txt +0 -0
- Figures/Fig5_panele.txt +0 -0
- Figures/Fig5_panelf.txt +0 -0
- Figures/Fig6_panelb.txt +6 -0
- Figures/Fig6_panelc.txt +47 -0
- Figures/Fig7_panela.txt +13 -0
- Figures/Fig7_panelb.txt +161 -0
- Figures/Fig7_panelc.txt +81 -0
- Figures/Fig7_paneld.txt +55 -0
- Figures/Fig8_panela.txt +770 -0
- Figures/Fig8_panelb.txt +1001 -0
- Figures/Fig8_panelc.txt +1201 -0
- Figures/Fig8_paneld.txt +1201 -0
- Figures/Fig8_panele.txt +0 -0
- Figures/Fig8_panelf.txt +1131 -0
- Figures/Fig8_panelg.txt +1201 -0
- Figures/Fig8_panelh.txt +1201 -0
- Figures/Figure2.png +3 -0
- Figures/Figure3.png +3 -0
- Figures/Figure4.png +3 -0
- Figures/Figure5.png +3 -0
- Figures/Figure6.png +3 -0
- Figures/Figure7.png +3 -0
- Figures/Figure8.png +3 -0
.gitattributes
CHANGED
@@ -127,3 +127,6 @@ chromatin_access/sorghum_bicolor_test.fa filter=lfs diff=lfs merge=lfs -text
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pro_seq/m_esculenta_test.fa filter=lfs diff=lfs merge=lfs -text
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pro_seq/m_esculenta_train.fa filter=lfs diff=lfs merge=lfs -text
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pro_seq/m_esculenta_validation.fa filter=lfs diff=lfs merge=lfs -text
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pro_seq/m_esculenta_test.fa filter=lfs diff=lfs merge=lfs -text
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pro_seq/m_esculenta_train.fa filter=lfs diff=lfs merge=lfs -text
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pro_seq/m_esculenta_validation.fa filter=lfs diff=lfs merge=lfs -text
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Figures/Fig2_paneld1.txt filter=lfs diff=lfs merge=lfs -text
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Figures/Fig2_paneld2.txt filter=lfs diff=lfs merge=lfs -text
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Figures/Fig5_panela.txt filter=lfs diff=lfs merge=lfs -text
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Figures/Fig2_panela.txt
ADDED
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Species Feature Num
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A. thaliana 3'UTR 24315
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A. thaliana 5'UTR 3827
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A. thaliana CDS 21226
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A. thaliana exon 950
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A. thaliana intron 9144
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A. thaliana 3'UTRext 7613
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C. reinhardtii 3'UTR 21535
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C. reinhardtii 5'UTR 816
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C. reinhardtii CDS 1112
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11 |
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C. reinhardtii exon 0
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12 |
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C. reinhardtii intron 883
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13 |
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C. reinhardtii 3'UTRext 9294
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14 |
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M. truncatula 3'UTR 8734
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15 |
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M. truncatula 5'UTR 470
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M. truncatula CDS 3278
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M. truncatula exon 0
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M. truncatula intron 1871
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19 |
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M. truncatula 3'UTRext 4356
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O. sativa (Ind) 3'UTR 0
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21 |
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O. sativa (Ind) 5'UTR 0
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22 |
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O. sativa (Ind) CDS 1057
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23 |
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O. sativa (Ind) exon 0
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O. sativa (Ind) intron 5556
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O. sativa (Ind) 3'UTRext 31693
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O. sativa (Jap) 3'UTR 17888
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O. sativa (Jap) 5'UTR 744
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O. sativa (Jap) CDS 1443
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O. sativa (Jap) exon 0
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O. sativa (Jap) intron 4927
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O. sativa (Jap) 3'UTRext 21949
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T. pratense 3'UTR 15411
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T. pratense 5'UTR 800
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T. pratense CDS 9726
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T. pratense exon 170
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T. pratense intron 5291
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T. pratense 3'UTRext 10301
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Figures/Fig2_panelb1.txt
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Figures/Fig2_panelb2.txt
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Figures/Fig2_panelbc.txt
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Chrom Label Count
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chr1 non-acceptor 563764
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chr1 acceptor 20011
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chr2 non-acceptor 333524
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chr2 acceptor 11764
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chr3 non-acceptor 426301
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chr3 acceptor 15063
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chr4 non-acceptor 322825
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chr4 acceptor 11592
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chr5 non-acceptor 511484
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chr5 acceptor 18441
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chr1 non-donor 866124
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chr1 donor 19970
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chr2 non-donor 513532
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chr2 donor 11725
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chr3 non-donor 655110
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chr3 donor 15017
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chr4 non-donor 494988
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chr4 donor 11568
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chr5 non-donor 782180
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chr5 donor 18379
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Figures/Fig2_paneld1.txt
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version https://git-lfs.github.com/spec/v1
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oid sha256:79649a4ddc6fa09ee7e1ade9383c629c8264f00ccfe8597470b734896556e0bf
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size 42089628
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Figures/Fig2_paneld2.txt
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version https://git-lfs.github.com/spec/v1
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oid sha256:9009561c0c756edc850236a38e1d1b7fe431d87b6c7ab675b18b4024ec4a9183
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size 42609765
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Figures/Fig2_panele.txt
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Figures/Fig2_panelf1.txt
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Figures/Fig2_panelf2.txt
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Figures/Fig3_panela.txt
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Figures/Fig3_panelb.txt
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Figures/Fig3_panelc.txt
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Figures/Fig3_paneld.txt
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Figures/Fig3_panele.txt
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Species Model Type R2
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A. thaliana Maize model AgroNT 0.62
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S. bicolor Maize model AgroNT 0.68
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Z. mays Maize model AgroNT 0.71
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A. thaliana Tobacco model AgroNT 0.62
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S. bicolor Tobacco model AgroNT 0.74
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Z. mays Tobacco model AgroNT 0.75
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A. thaliana Maize model CNN (Jores et al.) 0.58
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S. bicolor Maize model CNN (Jores et al.) 0.65
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Z. mays Maize model CNN (Jores et al.) 0.69
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A. thaliana Tobacco model CNN (Jores et al.) 0.57
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S. bicolor Tobacco model CNN (Jores et al.) 0.71
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Z. mays Tobacco model CNN (Jores et al.) 0.73
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Figures/Fig3_panelf.txt
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Species Model Type R2
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A. thaliana Maize model AgroNT 0.69
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GC Maize model AgroNT 0.68
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Z. mays Maize model AgroNT 0.65
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A. thaliana Tobacco model AgroNT 0.77
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GC Tobacco model AgroNT 0.67
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Z. mays Tobacco model AgroNT 0.76
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A. thaliana Maize model CNN (Gorjifard et al.) 0.68
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GC Maize model CNN (Gorjifard et al.) 0.64
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Z. mays Maize model CNN (Gorjifard et al.) 0.67
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A. thaliana Tobacco model CNN (Gorjifard et al.) 0.77
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12 |
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GC Tobacco model CNN (Gorjifard et al.) 0.65
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Z. mays Tobacco model CNN (Gorjifard et al.) 0.76
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Figures/Fig4_panela.txt
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Figures/Fig4_panelb.txt
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Species Tissue Method AUC
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Z. mays Zmays_ear_big_bottom_1 AgroNT 0.981893775458721
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Z. mays Zmays_ear_big_bottom_1 DeepSEA 0.9807
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Z. mays Zmays_ear_big_bottom_2 AgroNT 0.983912174594928
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Z. mays Zmays_ear_big_bottom_2 DeepSEA 0.9828
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Z. mays Zmays_ear_big_top_1 AgroNT 0.980965753226404
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Z. mays Zmays_ear_big_top_1 DeepSEA 0.9802
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Z. mays Zmays_ear_big_top_2 AgroNT 0.983192363826982
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Z. mays Zmays_ear_big_top_2 DeepSEA 0.9826
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Z. mays Zmays_ear_small_1 AgroNT 0.981633119983466
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Z. mays Zmays_ear_small_1 DeepSEA 0.98
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Z. mays Zmays_ear_small_2 AgroNT 0.981918011278322
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Z. mays Zmays_ear_small_2 DeepSEA 0.9815
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Z. mays Zmays_flag_leaf_1 AgroNT 0.979817688893831
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Z. mays Zmays_flag_leaf_1 DeepSEA 0.9823
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Z. mays Zmays_flag_leaf_2 AgroNT 0.979793357683983
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Z. mays Zmays_flag_leaf_2 DeepSEA 0.9823
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Z. mays Zmays_flower_1 AgroNT 0.986516769179244
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Z. mays Zmays_flower_1 DeepSEA 0.9827
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Z. mays Zmays_flower_2 AgroNT 0.986648079267573
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Z. mays Zmays_flower_2 DeepSEA 0.9888
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Z. mays Zmays_root_1 AgroNT 0.98366877408458
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Z. mays Zmays_root_1 DeepSEA 0.9847
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Z. mays Zmays_root_2 AgroNT 0.983761544892374
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Z. mays Zmays_root_2 DeepSEA 0.9862
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Z. mays Zmays_root_3 AgroNT 0.978893882607849
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Z. mays Zmays_root_3 DeepSEA 0.9813
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Z. mays Zmays_tassel_bottom_1 AgroNT 0.984366920979795
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Z. mays Zmays_tassel_bottom_1 DeepSEA 0.9835
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Z. mays Zmays_tassel_bottom_2 AgroNT 0.983714655209693
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Z. mays Zmays_tassel_bottom_2 DeepSEA 0.9826
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Z. mays Zmays_tassel_top_1 AgroNT 0.981452565673348
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Z. mays Zmays_tassel_top_1 DeepSEA 0.9823
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Z. mays Zmays_young_leaf_1 AgroNT 0.984966182571289
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Z. mays Zmays_young_leaf_1 DeepSEA 0.9866
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Z. mays Zmays_young_leaf_2 AgroNT 0.986670289174259
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Z. mays Zmays_young_leaf_2 DeepSEA 0.988
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Z. mays Zmays_young_leaf_3 AgroNT 0.978924277113606
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Z. mays Zmays_young_leaf_3 DeepSEA 0.9814
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S. italica Sitalica_flag_leaf_1 AgroNT 0.944024138159233
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S. italica Sitalica_flag_leaf_1 DeepSEA 0.9475
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42 |
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S. italica Sitalica_flag_leaf_2 AgroNT 0.944368499972782
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S. italica Sitalica_flag_leaf_2 DeepSEA 0.9491
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44 |
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S. italica Sitalica_flower_1 AgroNT 0.95310049075726
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S. italica Sitalica_flower_1 DeepSEA 0.9497
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S. italica Sitalica_flower_2 AgroNT 0.953664147176581
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S. italica Sitalica_flower_2 DeepSEA 0.9492
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48 |
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S. italica Sitalica_panicle_1 AgroNT 0.953544404251039
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49 |
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S. italica Sitalica_panicle_1 DeepSEA 0.9489
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S. italica Sitalica_panicle_2 AgroNT 0.956185429551665
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S. italica Sitalica_panicle_2 DeepSEA 0.9515
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S. italica Sitalica_root_1 AgroNT 0.982534830071808
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53 |
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S. italica Sitalica_root_1 DeepSEA 0.9806
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54 |
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S. italica Sitalica_young_leaf_1 AgroNT 0.970654176829444
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55 |
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S. italica Sitalica_young_leaf_1 DeepSEA 0.9734
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S. italica Sitalica_young_leaf_2 AgroNT 0.960840181820109
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57 |
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S. italica Sitalica_young_leaf_2 DeepSEA 0.9611
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58 |
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S. bicolor Sorghum_flag_leaf_1 AgroNT 0.974832701363744
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59 |
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S. bicolor Sorghum_flag_leaf_1 DeepSEA 0.977
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60 |
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S. bicolor Sorghum_flag_leaf_2 AgroNT 0.97042614544364
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61 |
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S. bicolor Sorghum_flag_leaf_2 DeepSEA 0.9753
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S. bicolor Sorghum_flower_1 AgroNT 0.968993168619242
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S. bicolor Sorghum_flower_1 DeepSEA 0.9721
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64 |
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S. bicolor Sorghum_flower_2 AgroNT 0.969920665370966
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65 |
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S. bicolor Sorghum_flower_2 DeepSEA 0.9714
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66 |
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S. bicolor Sorghum_lemma_1 AgroNT 0.973795562902938
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67 |
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S. bicolor Sorghum_lemma_1 DeepSEA 0.9745
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68 |
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S. bicolor Sorghum_lemma_2 AgroNT 0.966884736086807
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69 |
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S. bicolor Sorghum_lemma_2 DeepSEA 0.972
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70 |
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S. bicolor Sorghum_panicle_bottom_1 AgroNT 0.969094439691713
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71 |
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S. bicolor Sorghum_panicle_bottom_1 DeepSEA 0.9691
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72 |
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S. bicolor Sorghum_panicle_bottom_2 AgroNT 0.963600554336402
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73 |
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S. bicolor Sorghum_panicle_bottom_2 DeepSEA 0.966
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74 |
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S. bicolor Sorghum_panicle_top_1 AgroNT 0.979871200130056
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75 |
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S. bicolor Sorghum_panicle_top_1 DeepSEA 0.9778
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76 |
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S. bicolor Sorghum_panicle_top_2 AgroNT 0.978069551723402
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77 |
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S. bicolor Sorghum_panicle_top_2 DeepSEA 0.9776
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78 |
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S. bicolor Sorghum_root_1 AgroNT 0.990285421719328
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79 |
+
S. bicolor Sorghum_root_1 DeepSEA 0.9907
|
80 |
+
S. bicolor Sorghum_root_2 AgroNT 0.967368650288689
|
81 |
+
S. bicolor Sorghum_root_2 DeepSEA 0.9671
|
82 |
+
S. bicolor Sorghum_young_leaf_1 AgroNT 0.983546550899923
|
83 |
+
S. bicolor Sorghum_young_leaf_1 DeepSEA 0.9841
|
84 |
+
S. bicolor Sorghum_young_leaf_2 AgroNT 0.985633959206328
|
85 |
+
S. bicolor Sorghum_young_leaf_2 DeepSEA 0.9856
|
86 |
+
O. sativa MH63_flag_leaf_1 AgroNT 0.953557915779257
|
87 |
+
O. sativa MH63_flag_leaf_1 DeepSEA 0.9345
|
88 |
+
O. sativa MH63_flag_leaf_2 AgroNT 0.949630325952582
|
89 |
+
O. sativa MH63_flag_leaf_2 DeepSEA 0.9508
|
90 |
+
O. sativa MH63_flower_1 AgroNT 0.941272640332567
|
91 |
+
O. sativa MH63_flower_1 DeepSEA 0.9746
|
92 |
+
O. sativa MH63_flower_2 AgroNT 0.940889495879432
|
93 |
+
O. sativa MH63_flower_2 DeepSEA 0.981
|
94 |
+
O. sativa MH63_lemma_1 AgroNT 0.960587051768769
|
95 |
+
O. sativa MH63_lemma_1 DeepSEA 0.9458
|
96 |
+
O. sativa MH63_lemma_2 AgroNT 0.955992283046744
|
97 |
+
O. sativa MH63_lemma_2 DeepSEA 0.9478
|
98 |
+
O. sativa MH63_panicle_1 AgroNT 0.96694647990786
|
99 |
+
O. sativa MH63_panicle_1 DeepSEA 0.9636
|
100 |
+
O. sativa MH63_panicle_2 AgroNT 0.976575958888608
|
101 |
+
O. sativa MH63_panicle_2 DeepSEA 0.9686
|
102 |
+
O. sativa MH63_panicle_3 AgroNT 0.967295262054253
|
103 |
+
O. sativa MH63_panicle_3 DeepSEA 0.9708
|
104 |
+
O. sativa MH63_panicle_4 AgroNT 0.962823534116396
|
105 |
+
O. sativa MH63_panicle_4 DeepSEA 0.9573
|
106 |
+
O. sativa MH63_panicle_5 AgroNT 0.961028854238987
|
107 |
+
O. sativa MH63_panicle_5 DeepSEA 0.9588
|
108 |
+
O. sativa MH63_root_1 AgroNT 0.95042864895822
|
109 |
+
O. sativa MH63_root_1 DeepSEA 0.9535
|
110 |
+
O. sativa MH63_root_2 AgroNT 0.9524977551959
|
111 |
+
O. sativa MH63_root_2 DeepSEA 0.9563
|
112 |
+
O. sativa MH63_young_leaf_1 AgroNT 0.942603068013723
|
113 |
+
O. sativa MH63_young_leaf_1 DeepSEA 0.9457
|
114 |
+
O. sativa MH63_young_leaf_2 AgroNT 0.963966771336426
|
115 |
+
O. sativa MH63_young_leaf_2 DeepSEA 0.952
|
116 |
+
O. sativa ZS97_flag_leaf_1 AgroNT 0.953557915779257
|
117 |
+
O. sativa ZS97_flag_leaf_1 DeepSEA 0.95
|
118 |
+
O. sativa ZS97_flag_leaf_2 AgroNT 0.949630325952582
|
119 |
+
O. sativa ZS97_flag_leaf_2 DeepSEA 0.9468
|
120 |
+
O. sativa ZS97_flower_1 AgroNT 0.941272640332567
|
121 |
+
O. sativa ZS97_flower_1 DeepSEA 0.9383
|
122 |
+
O. sativa ZS97_flower_2 AgroNT 0.940889495879432
|
123 |
+
O. sativa ZS97_flower_2 DeepSEA 0.9382
|
124 |
+
O. sativa ZS97_lemma_1 AgroNT 0.960587051768769
|
125 |
+
O. sativa ZS97_lemma_1 DeepSEA 0.9599
|
126 |
+
O. sativa ZS97_lemma_2 AgroNT 0.955992283046744
|
127 |
+
O. sativa ZS97_lemma_2 DeepSEA 0.9563
|
128 |
+
O. sativa ZS97_panicle_1 AgroNT 0.96694647990786
|
129 |
+
O. sativa ZS97_panicle_1 DeepSEA 0.9616
|
130 |
+
O. sativa ZS97_panicle_2 AgroNT 0.976575958888608
|
131 |
+
O. sativa ZS97_panicle_2 DeepSEA 0.9738
|
132 |
+
O. sativa ZS97_panicle_3 AgroNT 0.967295262054253
|
133 |
+
O. sativa ZS97_panicle_3 DeepSEA 0.9646
|
134 |
+
O. sativa ZS97_panicle_4 AgroNT 0.962823534116396
|
135 |
+
O. sativa ZS97_panicle_4 DeepSEA 0.959
|
136 |
+
O. sativa ZS97_panicle_5 AgroNT 0.961028854238987
|
137 |
+
O. sativa ZS97_panicle_5 DeepSEA 0.955
|
138 |
+
O. sativa ZS97_root_1 AgroNT 0.95042864895822
|
139 |
+
O. sativa ZS97_root_1 DeepSEA 0.9495
|
140 |
+
O. sativa ZS97_root_2 AgroNT 0.9524977551959
|
141 |
+
O. sativa ZS97_root_2 DeepSEA 0.9504
|
142 |
+
O. sativa ZS97_young_leaf_1 AgroNT 0.942603068013723
|
143 |
+
O. sativa ZS97_young_leaf_1 DeepSEA 0.9465
|
144 |
+
O. sativa ZS97_young_leaf_2 AgroNT 0.963966771336426
|
145 |
+
O. sativa ZS97_young_leaf_2 DeepSEA 0.9603
|
146 |
+
B. distachyon flag_leaf_1 AgroNT 0.943395959465956
|
147 |
+
B. distachyon flag_leaf_1 DeepSEA 0.9386
|
148 |
+
B. distachyon flag_leaf_2 AgroNT 0.944775955433103
|
149 |
+
B. distachyon flag_leaf_2 DeepSEA 0.9384
|
150 |
+
B. distachyon flower_1 AgroNT 0.957222682628638
|
151 |
+
B. distachyon flower_1 DeepSEA 0.9522
|
152 |
+
B. distachyon flower_2 AgroNT 0.962451565529302
|
153 |
+
B. distachyon flower_2 DeepSEA 0.9598
|
154 |
+
B. distachyon panicle_1 AgroNT 0.959575443197348
|
155 |
+
B. distachyon panicle_1 DeepSEA 0.9529
|
156 |
+
B. distachyon root_1 AgroNT 0.966645451400899
|
157 |
+
B. distachyon root_1 DeepSEA 0.9571
|
158 |
+
B. distachyon root_2 AgroNT 0.957868390949404
|
159 |
+
B. distachyon root_2 DeepSEA 0.9551
|
160 |
+
B. distachyon young_leaf_1 AgroNT 0.949881344630109
|
161 |
+
B. distachyon young_leaf_1 DeepSEA 0.9474
|
162 |
+
B. distachyon young_leaf_2 AgroNT 0.963195725341801
|
163 |
+
B. distachyon young_leaf_2 DeepSEA 0.9524
|
164 |
+
A. thaliana 7days_leaf_rep1 AgroNT 0.924384292823498
|
165 |
+
A. thaliana 7days_leaf_rep1 DeepSEA 0.9214
|
166 |
+
A. thaliana 7days_leaf_rep2 AgroNT 0.940838807358043
|
167 |
+
A. thaliana 7days_leaf_rep2 DeepSEA 0.9397
|
168 |
+
A. thaliana mesophyll_rep1 AgroNT 0.953978841461623
|
169 |
+
A. thaliana mesophyll_rep1 DeepSEA 0.9499
|
170 |
+
A. thaliana mesophyll_rep2 AgroNT 0.952322992209123
|
171 |
+
A. thaliana mesophyll_rep2 DeepSEA 0.9456
|
172 |
+
A. thaliana mesophyll_rep3 AgroNT 0.951822940113686
|
173 |
+
A. thaliana mesophyll_rep3 DeepSEA 0.9493
|
174 |
+
A. thaliana root_hair_rep1 AgroNT 0.935826444576565
|
175 |
+
A. thaliana root_hair_rep1 DeepSEA 0.9341
|
176 |
+
A. thaliana root_hair_rep2 AgroNT 0.948641786084109
|
177 |
+
A. thaliana root_hair_rep2 DeepSEA 0.9482
|
178 |
+
A. thaliana root_non_hair_rep1 AgroNT 0.942184075232078
|
179 |
+
A. thaliana root_non_hair_rep1 DeepSEA 0.9378
|
180 |
+
A. thaliana root_non_hair_rep2 AgroNT 0.9455757148958
|
181 |
+
A. thaliana root_non_hair_rep2 DeepSEA 0.9438
|
182 |
+
A. thaliana root_tip_rep1 AgroNT 0.942864493452685
|
183 |
+
A. thaliana root_tip_rep1 DeepSEA 0.9515
|
184 |
+
A. thaliana root_tip_rep2 AgroNT 0.914008370410249
|
185 |
+
A. thaliana root_tip_rep2 DeepSEA 0.9163
|
186 |
+
A. thaliana stem_rep1 AgroNT 0.955013217684825
|
187 |
+
A. thaliana stem_rep1 DeepSEA 0.9502
|
188 |
+
A. thaliana stem_rep2 AgroNT 0.952474858182249
|
189 |
+
A. thaliana stem_rep2 DeepSEA 0.949
|
190 |
+
A. thaliana stem_rep3 AgroNT 0.951076943957884
|
191 |
+
A. thaliana stem_rep3 DeepSEA 0.9451
|
Figures/Fig5_panela.txt
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:461c9e9430d20b6cd7f0cdb3b05ad264d58e1b69a15bda237dcd3ef008c0fe73
|
3 |
+
size 13864400
|
Figures/Fig5_panelb.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
Figures/Fig5_panelc.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
Figures/Fig5_paneld.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
Figures/Fig5_panele.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
Figures/Fig5_panelf.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
Figures/Fig6_panelb.txt
ADDED
@@ -0,0 +1,6 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Variation R2
|
2 |
+
5kb US - 1kb DS 0.621
|
3 |
+
4kb US - 2kb DS 0.645809
|
4 |
+
3kb US - 3kb DS 0.659964
|
5 |
+
2kb US - 4kb DS 0.657784
|
6 |
+
1kb US - 5kb DS 0.661819
|
Figures/Fig6_panelc.txt
ADDED
@@ -0,0 +1,47 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Tissue Variation R2
|
2 |
+
Root maturation zone 5kb US - 1kb DS 0.646219067243882
|
3 |
+
Root elongation zone 5kb US - 1kb DS 0.613524896464522
|
4 |
+
Root cortex 5kb US - 1kb DS 0.578358455733256
|
5 |
+
Vegetative meristem 5kb US - 1kb DS 0.669993503216862
|
6 |
+
Endosperm (12 Days) 5kb US - 1kb DS 0.645464477317545
|
7 |
+
Pericarp and aleurone 5kb US - 1kb DS 0.585545958925091
|
8 |
+
Endosperm crown 5kb US - 1kb DS 0.592805880599955
|
9 |
+
Symmetrical division 5kb US - 1kb DS 0.658537665778199
|
10 |
+
Stomatal division 5kb US - 1kb DS 0.649182301402897
|
11 |
+
Growth zone 5kb US - 1kb DS 0.639230824745207
|
12 |
+
Embryos (20 Days) 5kb US - 1kb DS 0.651077993166241
|
13 |
+
Embryos 5kb US - 1kb DS 0.624652469376995
|
14 |
+
Germinating kernels 5kb US - 1kb DS 0.619366169146228
|
15 |
+
Mature leaf tissue 5kb US - 1kb DS 0.569575368040227
|
16 |
+
6.8 mm from ear tip 5kb US - 1kb DS 0.664358479872003
|
17 |
+
2.4 mm from ear tip 5kb US - 1kb DS 0.668339614777341
|
18 |
+
Primary root 5kb US - 1kb DS 0.624541834299598
|
19 |
+
Secondary root 5kb US - 1kb DS 0.6291517865226
|
20 |
+
Mature pollen 5kb US - 1kb DS 0.406302148902371
|
21 |
+
Silks 5kb US - 1kb DS 0.610204476616703
|
22 |
+
Mature female spikelets 5kb US - 1kb DS 0.660451870786676
|
23 |
+
Internode (6.7) 5kb US - 1kb DS 0.670598103465166
|
24 |
+
Internode (7.8) 5kb US - 1kb DS 0.677069027420533
|
25 |
+
Root maturation zone 1kb US - 5kb DS 0.685380247188057
|
26 |
+
Root elongation zone 1kb US - 5kb DS 0.660089334320339
|
27 |
+
Root cortex 1kb US - 5kb DS 0.618404380563478
|
28 |
+
Vegetative meristem 1kb US - 5kb DS 0.701258766875842
|
29 |
+
Endosperm (12 Days) 1kb US - 5kb DS 0.682376822842004
|
30 |
+
Pericarp and aleurone 1kb US - 5kb DS 0.626868906344587
|
31 |
+
Endosperm crown 1kb US - 5kb DS 0.631253455951277
|
32 |
+
Symmetrical division 1kb US - 5kb DS 0.704309725260427
|
33 |
+
Stomatal division 1kb US - 5kb DS 0.689357925511412
|
34 |
+
Growth zone 1kb US - 5kb DS 0.683735809853806
|
35 |
+
Embryos (20 Days) 1kb US - 5kb DS 0.686186907523153
|
36 |
+
Embryos 1kb US - 5kb DS 0.665973906993976
|
37 |
+
Germinating kernels 1kb US - 5kb DS 0.666933631719764
|
38 |
+
Mature leaf tissue 1kb US - 5kb DS 0.604542688821447
|
39 |
+
6.8 mm from ear tip 1kb US - 5kb DS 0.703620463545164
|
40 |
+
2.4 mm from ear tip 1kb US - 5kb DS 0.707748064905367
|
41 |
+
Primary root 1kb US - 5kb DS 0.668010231450032
|
42 |
+
Secondary root 1kb US - 5kb DS 0.67491028488731
|
43 |
+
Mature pollen 1kb US - 5kb DS 0.420681345188956
|
44 |
+
Silks 1kb US - 5kb DS 0.641837225832962
|
45 |
+
Mature female spikelets 1kb US - 5kb DS 0.688546636445079
|
46 |
+
Internode (6.7) 1kb US - 5kb DS 0.708113345897187
|
47 |
+
Internode (7.8) 1kb US - 5kb DS 0.708893025344515
|
Figures/Fig7_panela.txt
ADDED
@@ -0,0 +1,13 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Species BinLabel Ratio RatioLCI RatioUCI
|
2 |
+
A. thaliana <0.001 1.80417031573512 1.79421122117692 1.81321931733638
|
3 |
+
A. thaliana 0.001-
|
4 |
+
0.01 1.4763317224907 1.46760341533666 1.48427906135701
|
5 |
+
A. thaliana 0.01-
|
6 |
+
0.05 1.09434766849321 1.08411450726465 1.10372451878627
|
7 |
+
A. thaliana >0.05 0.74763122711155 0.741111647431835 0.753363306896884
|
8 |
+
O. sativa 0.001-
|
9 |
+
0.01 1.46922601186522 1.45328782528876 1.48447763257969
|
10 |
+
O. sativa <0.001 1.60192007144452 1.55255380932752 1.67003041483845
|
11 |
+
O. sativa 0.01-
|
12 |
+
0.05 1.32297667390688 1.30549882835489 1.34443622916762
|
13 |
+
O. sativa >0.05 1.22248373586318 1.21174568636103 1.23179399122349
|
Figures/Fig7_panelb.txt
ADDED
@@ -0,0 +1,161 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Species BinLabel Score Cutoff OR ORLCI ORUCI
|
2 |
+
A. thaliana 0.001-0.01 GPN 0.01 2.79589374972583 2.65402406918302 2.94648832053553
|
3 |
+
A. thaliana <0.001 GPN 0.01 3.92476063722532 3.73003020997533 4.13140987300125
|
4 |
+
O. sativa 0.001-0.01 GPN 0.01 1.78372157580633 1.73685975872899 1.8318793763113
|
5 |
+
O. sativa <0.001 GPN 0.01 3.11171004981781 2.94106822844044 3.29048630724921
|
6 |
+
A. thaliana 0.001-0.01 LLR 0.01 2.02398349853504 1.9377917334414 2.11453215792092
|
7 |
+
A. thaliana <0.001 LLR 0.01 2.18601166256716 2.09456678363459 2.28230181199414
|
8 |
+
O. sativa 0.001-0.01 LLR 0.01 2.16548807032713 2.1071480585774 2.22542085682122
|
9 |
+
O. sativa <0.001 LLR 0.01 8.2639173295073 7.91167022064462 8.62825790565756
|
10 |
+
A. thaliana 0.001-0.01 dot product (layer 11) 0.01 2.39245013686122 2.28765733266279 2.5025932512594
|
11 |
+
A. thaliana <0.001 dot product (layer 11) 0.01 2.05662206960722 1.96701339971264 2.15123790981399
|
12 |
+
O. sativa 0.001-0.01 dot product (layer 11) 0.01 1.80929616301833 1.76134591740048 1.85888615688131
|
13 |
+
O. sativa <0.001 dot product (layer 11) 0.01 10.9123215496555 10.4841389325897 11.3590983782801
|
14 |
+
A. thaliana 0.001-0.01 dot product (layer 21) 0.01 1.9866399760306 1.9051245842422 2.07208934992022
|
15 |
+
A. thaliana <0.001 dot product (layer 21) 0.01 1.71927938362758 1.64902467710638 1.79317196177141
|
16 |
+
O. sativa 0.001-0.01 dot product (layer 21) 0.01 3.33270424232566 3.237244254904 3.43129580579134
|
17 |
+
O. sativa <0.001 dot product (layer 21) 0.01 26.8675350565658 25.8449300106299 27.8827570590091
|
18 |
+
A. thaliana 0.001-0.01 dot product (layer 31) 0.01 2.25854597369053 2.16205087820968 2.35991705032605
|
19 |
+
A. thaliana <0.001 dot product (layer 31) 0.01 1.89739397050903 1.81649190389093 1.98262249946846
|
20 |
+
O. sativa 0.001-0.01 dot product (layer 31) 0.01 2.33684164561244 2.27318229095661 2.40231430379639
|
21 |
+
O. sativa <0.001 dot product (layer 31) 0.01 17.0698149322323 16.4267094445558 17.7307911102106
|
22 |
+
A. thaliana 0.001-0.01 dot product (layer 40) 0.01 1.80494686959544 1.73285787239587 1.88029800499497
|
23 |
+
A. thaliana <0.001 dot product (layer 40) 0.01 1.61202761589844 1.54809671871742 1.67922745193526
|
24 |
+
O. sativa 0.001-0.01 dot product (layer 40) 0.01 1.68633615196124 1.64110291876775 1.73301730246615
|
25 |
+
O. sativa <0.001 dot product (layer 40) 0.01 10.444299089724 10.0400574142299 10.8630741595171
|
26 |
+
A. thaliana 0.001-0.01 phyloP 0.01 2.20207202102618 2.10380149721509 2.30567529695017
|
27 |
+
A. thaliana <0.001 phyloP 0.01 2.88798892256567 2.76196939195001 3.02075853654835
|
28 |
+
O. sativa 0.001-0.01 phyloP 0.01 1.72702832638307 1.68231599074119 1.77303290817394
|
29 |
+
O. sativa <0.001 phyloP 0.01 0.840498307365427 0.761705530415916 0.925423940661311
|
30 |
+
A. thaliana 0.001-0.01 phastCons 0.01 1.89308656025406 1.81158220362467 1.97866756734878
|
31 |
+
A. thaliana <0.001 phastCons 0.01 2.43942621345622 2.33720482809442 2.5468632305519
|
32 |
+
O. sativa 0.001-0.01 phastCons 0.01 1.48288209164138 1.44488227970568 1.52198135857454
|
33 |
+
O. sativa <0.001 phastCons 0.01 0.468813407427246 0.413601445256946 0.52941794983114
|
34 |
+
A. thaliana 0.001-0.01 GPN 0.02 2.48596852803267 2.40170202953465 2.57412793675262
|
35 |
+
A. thaliana <0.001 GPN 0.02 3.2627913321495 3.15439890855922 3.37589682928079
|
36 |
+
O. sativa 0.001-0.01 GPN 0.02 1.5875395767333 1.5580151386903 1.61766713719248
|
37 |
+
O. sativa <0.001 GPN 0.02 2.46374425190682 2.36023095271571 2.57097841315927
|
38 |
+
A. thaliana 0.001-0.01 LLR 0.02 1.83214271189839 1.77836491386574 1.88764535979103
|
39 |
+
A. thaliana <0.001 LLR 0.02 1.98228633427978 1.92525662120697 2.04144490458804
|
40 |
+
O. sativa 0.001-0.01 LLR 0.02 2.05677217734568 2.01745843115565 2.0967133344759
|
41 |
+
O. sativa <0.001 LLR 0.02 6.93089846489104 6.70792989353286 7.15815844515565
|
42 |
+
A. thaliana 0.001-0.01 dot product (layer 11) 0.02 2.06029218905194 1.99970136839312 2.12288798120994
|
43 |
+
A. thaliana <0.001 dot product (layer 11) 0.02 1.74799221790295 1.69674592834804 1.80115171926689
|
44 |
+
O. sativa 0.001-0.01 dot product (layer 11) 0.02 1.75650404635071 1.72332235417785 1.79040921062824
|
45 |
+
O. sativa <0.001 dot product (layer 11) 0.02 9.95567894761612 9.66630634957815 10.2566647523147
|
46 |
+
A. thaliana 0.001-0.01 dot product (layer 21) 0.02 1.66772753801108 1.62198729895713 1.71479149522291
|
47 |
+
A. thaliana <0.001 dot product (layer 21) 0.02 1.43132137560334 1.39225805390371 1.47171556185624
|
48 |
+
O. sativa 0.001-0.01 dot product (layer 21) 0.02 2.58194466923083 2.53115419626317 2.63400826315577
|
49 |
+
O. sativa <0.001 dot product (layer 21) 0.02 20.3372291805836 19.7786950774532 20.9161269585403
|
50 |
+
A. thaliana 0.001-0.01 dot product (layer 31) 0.02 2.02067748152562 1.96156677930071 2.08177474910558
|
51 |
+
A. thaliana <0.001 dot product (layer 31) 0.02 1.69058921674105 1.64120874248772 1.7417567494896
|
52 |
+
O. sativa 0.001-0.01 dot product (layer 31) 0.02 2.2170527771336 2.17410007756911 2.26076038420915
|
53 |
+
O. sativa <0.001 dot product (layer 31) 0.02 15.9136510962947 15.4680775345836 16.3752779601244
|
54 |
+
A. thaliana 0.001-0.01 dot product (layer 40) 0.02 1.58208848846697 1.53936244041925 1.62627450497646
|
55 |
+
A. thaliana <0.001 dot product (layer 40) 0.02 1.40478831954751 1.36708630413452 1.44377781150719
|
56 |
+
O. sativa 0.001-0.01 dot product (layer 40) 0.02 1.64561226400604 1.61439113913757 1.6775716636048
|
57 |
+
O. sativa <0.001 dot product (layer 40) 0.02 9.26411600110014 8.99649325149299 9.53681409731375
|
58 |
+
A. thaliana 0.001-0.01 phyloP 0.02 2.28451626067308 2.21121292738807 2.36065164852852
|
59 |
+
A. thaliana <0.001 phyloP 0.02 2.99526221515086 2.90145006548384 3.09253188797344
|
60 |
+
O. sativa 0.001-0.01 phyloP 0.02 1.6668345334367 1.63994611966399 1.69438994520926
|
61 |
+
O. sativa <0.001 phyloP 0.02 0.836108399355207 0.787260247035125 0.887289328198364
|
62 |
+
A. thaliana 0.001-0.01 phastCons 0.02 1.66240335236207 1.61383923016009 1.71275373343627
|
63 |
+
A. thaliana <0.001 phastCons 0.02 2.11713636728554 2.05701236857512 2.17952271285749
|
64 |
+
O. sativa 0.001-0.01 phastCons 0.02 1.29302099700534 1.2693435437887 1.31723383291322
|
65 |
+
O. sativa <0.001 phastCons 0.02 0.439110007793609 0.402186299016245 0.478569803627006
|
66 |
+
A. thaliana 0.001-0.01 GPN 0.03 2.33434121175978 2.27134685221323 2.39920588272483
|
67 |
+
A. thaliana <0.001 GPN 0.03 2.91670361477971 2.83965420882223 2.99605687495373
|
68 |
+
O. sativa 0.001-0.01 GPN 0.03 1.4774203538699 1.45489745107115 1.50044433885433
|
69 |
+
O. sativa <0.001 GPN 0.03 2.11743742897935 2.04048688120762 2.19657676743216
|
70 |
+
A. thaliana 0.001-0.01 LLR 0.03 1.71519899482058 1.6748686273663 1.75650026365398
|
71 |
+
A. thaliana <0.001 LLR 0.03 1.83440438137437 1.79222909917478 1.8780615482461
|
72 |
+
O. sativa 0.001-0.01 LLR 0.03 1.97262905812463 1.94183051941307 2.00382938251295
|
73 |
+
O. sativa <0.001 LLR 0.03 6.16476994532928 5.99513927792258 6.33963184971565
|
74 |
+
A. thaliana 0.001-0.01 dot product (layer 11) 0.03 1.84074777960111 1.79797061736989 1.88456560511542
|
75 |
+
A. thaliana <0.001 dot product (layer 11) 0.03 1.56614264033364 1.52988699327701 1.60350318325963
|
76 |
+
O. sativa 0.001-0.01 dot product (layer 11) 0.03 1.71702344636813 1.69041914839738 1.74417696021837
|
77 |
+
O. sativa <0.001 dot product (layer 11) 0.03 9.65532740890558 9.4172637147712 9.89980237092704
|
78 |
+
A. thaliana 0.001-0.01 dot product (layer 21) 0.03 1.51350093486639 1.48058513001606 1.54738759896126
|
79 |
+
A. thaliana <0.001 dot product (layer 21) 0.03 1.31337085913953 1.28487387272825 1.34261309872009
|
80 |
+
O. sativa 0.001-0.01 dot product (layer 21) 0.03 2.32303980284168 2.2860555265821 2.36081094368585
|
81 |
+
O. sativa <0.001 dot product (layer 21) 0.03 17.7632678195676 17.3414325255972 18.1801760109056
|
82 |
+
A. thaliana 0.001-0.01 dot product (layer 31) 0.03 1.85124326373307 1.80816934593179 1.89549127441719
|
83 |
+
A. thaliana <0.001 dot product (layer 31) 0.03 1.55040981663768 1.51447529879647 1.5874187718904
|
84 |
+
O. sativa 0.001-0.01 dot product (layer 31) 0.03 2.12739104377944 2.09363895856261 2.161608259201
|
85 |
+
O. sativa <0.001 dot product (layer 31) 0.03 15.1689295147715 14.8163197162614 15.5432745511529
|
86 |
+
A. thaliana 0.001-0.01 dot product (layer 40) 0.03 1.47376172667361 1.44184029224461 1.50662582440822
|
87 |
+
A. thaliana <0.001 dot product (layer 40) 0.03 1.322352464244 1.29391030299951 1.35157332722699
|
88 |
+
O. sativa 0.001-0.01 dot product (layer 40) 0.03 1.58698174002996 1.56234493435694 1.61216997817258
|
89 |
+
O. sativa <0.001 dot product (layer 40) 0.03 8.35030732066262 8.14197798549785 8.56289797378876
|
90 |
+
A. thaliana 0.001-0.01 phyloP 0.03 2.18407422566129 2.1266486273253 2.24332957314268
|
91 |
+
A. thaliana <0.001 phyloP 0.03 2.83435717922493 2.76123046757969 2.90934799380533
|
92 |
+
O. sativa 0.001-0.01 phyloP 0.03 1.64183476756535 1.61692077037694 1.66732074370854
|
93 |
+
O. sativa <0.001 phyloP 0.03 0.807959936278909 0.763109529728135 0.854848844010782
|
94 |
+
A. thaliana 0.001-0.01 phastCons 0.03 1.58260988659647 1.54547666514553 1.62097987213968
|
95 |
+
A. thaliana <0.001 phastCons 0.03 1.98508645816788 1.93985441957779 2.03180247683594
|
96 |
+
O. sativa 0.001-0.01 phastCons 0.03 1.21750733649667 1.19908862125606 1.23623365064688
|
97 |
+
O. sativa <0.001 phastCons 0.03 0.448838802334234 0.418569113109332 0.480740067321972
|
98 |
+
A. thaliana 0.001-0.01 GPN 0.04 2.19130490941388 2.14160395923093 2.24242742790748
|
99 |
+
A. thaliana <0.001 GPN 0.04 2.65346582461006 2.59419959003218 2.71397940681267
|
100 |
+
O. sativa 0.001-0.01 GPN 0.04 1.40078499416436 1.38216238525556 1.4196225203297
|
101 |
+
O. sativa <0.001 GPN 0.04 1.89595067691544 1.83373011605294 1.95993711731558
|
102 |
+
A. thaliana 0.001-0.01 LLR 0.04 1.62348319757259 1.59095452955447 1.65667715044617
|
103 |
+
A. thaliana <0.001 LLR 0.04 1.72472348751822 1.69096273390546 1.75959295927223
|
104 |
+
O. sativa 0.001-0.01 LLR 0.04 1.91820392137009 1.89220635038762 1.94440936749118
|
105 |
+
O. sativa <0.001 LLR 0.04 5.6126018081428 5.47312028586688 5.75506648195356
|
106 |
+
A. thaliana 0.001-0.01 dot product (layer 11) 0.04 1.68929266713781 1.65618259218014 1.72317170759557
|
107 |
+
A. thaliana <0.001 dot product (layer 11) 0.04 1.44413693068704 1.41596095430339 1.47302008628704
|
108 |
+
O. sativa 0.001-0.01 dot product (layer 11) 0.04 1.69513445620973 1.67230582291661 1.71843982109143
|
109 |
+
O. sativa <0.001 dot product (layer 11) 0.04 9.37171459783246 9.16241491840208 9.58225258823019
|
110 |
+
A. thaliana 0.001-0.01 dot product (layer 21) 0.04 1.40465822138623 1.37864500611508 1.43132087962387
|
111 |
+
A. thaliana <0.001 dot product (layer 21) 0.04 1.23966875937099 1.21678481649364 1.26305667797411
|
112 |
+
O. sativa 0.001-0.01 dot product (layer 21) 0.04 2.14564327509633 2.11595213960973 2.17568555969694
|
113 |
+
O. sativa <0.001 dot product (layer 21) 0.04 15.7771632768255 15.4404182661035 16.1127607506724
|
114 |
+
A. thaliana 0.001-0.01 dot product (layer 31) 0.04 1.68970602202741 1.65656419397682 1.72354087728623
|
115 |
+
A. thaliana <0.001 dot product (layer 31) 0.04 1.4272524708277 1.39933055339902 1.45589976926807
|
116 |
+
O. sativa 0.001-0.01 dot product (layer 31) 0.04 2.02185205428639 1.99404889249427 2.05003831457693
|
117 |
+
O. sativa <0.001 dot product (layer 31) 0.04 14.103013152026 13.7959839841026 14.4206849906182
|
118 |
+
A. thaliana 0.001-0.01 dot product (layer 40) 0.04 1.41151419272004 1.38516766948566 1.43851926985581
|
119 |
+
A. thaliana <0.001 dot product (layer 40) 0.04 1.28141305180484 1.25770846196954 1.30569232959464
|
120 |
+
O. sativa 0.001-0.01 dot product (layer 40) 0.04 1.5323993499345 1.51170985308841 1.55341662474786
|
121 |
+
O. sativa <0.001 dot product (layer 40) 0.04 7.67235888730279 7.50054453816972 7.84789763530505
|
122 |
+
A. thaliana 0.001-0.01 phyloP 0.04 2.09559046072165 2.04926222705136 2.14297829851504
|
123 |
+
A. thaliana <0.001 phyloP 0.04 2.65597257771655 2.59856518505137 2.71455042918031
|
124 |
+
O. sativa 0.001-0.01 phyloP 0.04 1.61849694001289 1.59718709057015 1.64022211010842
|
125 |
+
O. sativa <0.001 phyloP 0.04 0.809640070836025 0.770858801812313 0.849977873871861
|
126 |
+
A. thaliana 0.001-0.01 phastCons 0.04 1.49959502534535 1.46956502742744 1.5304817231368
|
127 |
+
A. thaliana <0.001 phastCons 0.04 1.86191818466513 1.82575539405743 1.89922251270897
|
128 |
+
O. sativa 0.001-0.01 phastCons 0.04 1.18894579061163 1.17320992674221 1.20481962666039
|
129 |
+
O. sativa <0.001 phastCons 0.04 0.497687975591887 0.470022436905745 0.526638020784996
|
130 |
+
A. thaliana 0.001-0.01 GPN 0.05 2.0758876934699 2.03457552451978 2.11813644025119
|
131 |
+
A. thaliana <0.001 GPN 0.05 2.45378999630138 2.40559517585373 2.50258697747763
|
132 |
+
O. sativa 0.001-0.01 GPN 0.05 1.33965649735353 1.32365341301537 1.35588073728866
|
133 |
+
O. sativa <0.001 GPN 0.05 1.72239341553005 1.66984866708293 1.77628251646092
|
134 |
+
A. thaliana 0.001-0.01 LLR 0.05 1.55174951268505 1.52423519992644 1.57981114088671
|
135 |
+
A. thaliana <0.001 LLR 0.05 1.64353107458719 1.61503824135057 1.67274276227319
|
136 |
+
O. sativa 0.001-0.01 LLR 0.05 1.86505502746517 1.84237815026104 1.88792303369666
|
137 |
+
O. sativa <0.001 LLR 0.05 5.16830667123936 5.04829140247517 5.29009679827909
|
138 |
+
A. thaliana 0.001-0.01 dot product (layer 11) 0.05 1.59604179849022 1.56839087637682 1.6241855531187
|
139 |
+
A. thaliana <0.001 dot product (layer 11) 0.05 1.37077087323515 1.34715187242273 1.39490465199656
|
140 |
+
O. sativa 0.001-0.01 dot product (layer 11) 0.05 1.67019606864879 1.64996411535055 1.69084518716361
|
141 |
+
O. sativa <0.001 dot product (layer 11) 0.05 9.03968045100982 8.85533789602421 9.22595708585399
|
142 |
+
A. thaliana 0.001-0.01 dot product (layer 21) 0.05 1.32808928192591 1.30633225760426 1.35034795183316
|
143 |
+
A. thaliana <0.001 dot product (layer 21) 0.05 1.17799120384187 1.15879316900197 1.19754156139607
|
144 |
+
O. sativa 0.001-0.01 dot product (layer 21) 0.05 2.03055298953996 2.00541606594466 2.0558889696073
|
145 |
+
O. sativa <0.001 dot product (layer 21) 0.05 14.2222047152541 13.945790003853 14.5111520913723
|
146 |
+
A. thaliana 0.001-0.01 dot product (layer 31) 0.05 1.56221644656392 1.53532057297579 1.58959466695536
|
147 |
+
A. thaliana <0.001 dot product (layer 31) 0.05 1.33598717162887 1.31310663793255 1.35939988676715
|
148 |
+
O. sativa 0.001-0.01 dot product (layer 31) 0.05 1.94462136909251 1.92053155431956 1.96873495691104
|
149 |
+
O. sativa <0.001 dot product (layer 31) 0.05 13.1534116424103 12.901511252459 13.4294182875728
|
150 |
+
A. thaliana 0.001-0.01 dot product (layer 40) 0.05 1.36554172684486 1.3428894794818 1.38871284475542
|
151 |
+
A. thaliana <0.001 dot product (layer 40) 0.05 1.24458469330099 1.22417107575019 1.26547594818397
|
152 |
+
O. sativa 0.001-0.01 dot product (layer 40) 0.05 1.49661087599014 1.47849362689841 1.51507957530659
|
153 |
+
O. sativa <0.001 dot product (layer 40) 0.05 7.08364566252864 6.9341871461456 7.2323520729574
|
154 |
+
A. thaliana 0.001-0.01 phyloP 0.05 2.04273414727479 2.00348672865142 2.0828553304385
|
155 |
+
A. thaliana <0.001 phyloP 0.05 2.56940568337409 2.52144163014719 2.61888439523929
|
156 |
+
O. sativa 0.001-0.01 phyloP 0.05 1.5797117403782 1.56094039384276 1.59886017972503
|
157 |
+
O. sativa <0.001 phyloP 0.05 0.771601503997123 0.737689786190045 0.806734050365224
|
158 |
+
A. thaliana 0.001-0.01 phastCons 0.05 1.41808098454463 1.39312363326123 1.44363889892379
|
159 |
+
A. thaliana <0.001 phastCons 0.05 1.74023030274344 1.71042922540453 1.77075390134839
|
160 |
+
O. sativa 0.001-0.01 phastCons 0.05 1.17589476498483 1.16192048062619 1.19006515909256
|
161 |
+
O. sativa <0.001 phastCons 0.05 0.527300889034444 0.501721360293282 0.553823787798615
|
Figures/Fig7_panelc.txt
ADDED
@@ -0,0 +1,81 @@
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
Species Label Score Cutoff OR ORLCI ORUCI
|
2 |
+
A. thaliana coding GPN 0.01 1.15149325913358 0.878023512815937 1.48525284063787
|
3 |
+
A. thaliana non-coding GPN 0.01 1.6385209054985 1.33012851806986 1.99959201513652
|
4 |
+
A. thaliana coding phyloP 0.01 1.23375497298719 0.992924643573568 1.51709251810142
|
5 |
+
A. thaliana non-coding phyloP 0.01 1.19797829556504 0.943151741059582 1.5023232600968
|
6 |
+
A. thaliana coding phastCons 0.01 1.11346862618412 0.845152159956271 1.44193122840763
|
7 |
+
A. thaliana non-coding phastCons 0.01 1.10875981284169 0.865916260227574 1.40035275040863
|
8 |
+
A. thaliana coding LLR 0.01 0.938439724304913 0.69528968070105 1.24086863428277
|
9 |
+
A. thaliana non-coding LLR 0.01 1.7852347763965 1.46134959873797 2.16232755996585
|
10 |
+
A. thaliana coding dot product (layer 11) 0.01 1.3505523443766 1.04860887463022 1.71475973571805
|
11 |
+
A. thaliana non-coding dot product (layer 11) 0.01 2.88185751952188 2.43960361540078 3.3858252067243
|
12 |
+
A. thaliana coding dot product (layer 21) 0.01 1.49487099395042 1.1780229375524 1.87343554202231
|
13 |
+
A. thaliana non-coding dot product (layer 21) 0.01 1.37267107200458 1.08845447474317 1.71061081883935
|
14 |
+
A. thaliana coding dot product (layer 31) 0.01 1.01684763530313 0.762128518233314 1.33130365245969
|
15 |
+
A. thaliana non-coding dot product (layer 31) 0.01 2.28373175231466 1.90289468547401 2.72217762671585
|
16 |
+
A. thaliana coding dot product (layer 40) 0.01 1.44607347278545 1.1343017341034 1.81971300792749
|
17 |
+
A. thaliana non-coding dot product (layer 40) 0.01 2.8240591129705 2.39284501729866 3.3149035910378
|
18 |
+
A. thaliana coding GPN 0.02 1.21863294420981 1.01369607088174 1.45416311111647
|
19 |
+
A. thaliana non-coding GPN 0.02 1.59720416243324 1.37712422876677 1.84395066320483
|
20 |
+
A. thaliana coding phyloP 0.02 1.2635062963944 1.0538902590977 1.50400368449058
|
21 |
+
A. thaliana non-coding phyloP 0.02 1.21372106899637 1.02777237017571 1.42476647190925
|
22 |
+
A. thaliana coding phastCons 0.02 1.22850298310606 1.02261532261873 1.46499003926591
|
23 |
+
A. thaliana non-coding phastCons 0.02 1.17091896394563 0.989489356133552 1.3771033098622
|
24 |
+
A. thaliana coding LLR 0.02 1.04251738140831 0.85509572650409 1.25985200644557
|
25 |
+
A. thaliana non-coding LLR 0.02 1.70212466728269 1.47392820268947 1.95722353865806
|
26 |
+
A. thaliana coding dot product (layer 11) 0.02 1.64831352642149 1.40284897895137 1.9261177841857
|
27 |
+
A. thaliana non-coding dot product (layer 11) 0.02 2.78813280566878 2.47341838540928 3.13469019506542
|
28 |
+
A. thaliana coding dot product (layer 21) 0.02 1.15764816647232 0.958833880485238 1.38685016652752
|
29 |
+
A. thaliana non-coding dot product (layer 21) 0.02 2.00409805971712 1.74787672789581 2.28914763297693
|
30 |
+
A. thaliana coding dot product (layer 31) 0.02 1.05490009311297 0.866027092636251 1.27389315783325
|
31 |
+
A. thaliana non-coding dot product (layer 31) 0.02 2.16858987919223 1.90087664564012 2.46552472617563
|
32 |
+
A. thaliana coding dot product (layer 40) 0.02 1.29064133237207 1.0786249104618 1.53356177192815
|
33 |
+
A. thaliana non-coding dot product (layer 40) 0.02 2.46328543265941 2.17534329302053 2.78135213868627
|
34 |
+
A. thaliana coding GPN 0.03 1.20282721985064 1.03426646674918 1.39208313884168
|
35 |
+
A. thaliana non-coding GPN 0.03 1.48478186529501 1.30993585389488 1.67753026648217
|
36 |
+
A. thaliana coding phyloP 0.03 1.24073327146706 1.06878554790175 1.43351097476107
|
37 |
+
A. thaliana non-coding phyloP 0.03 1.21901039782217 1.06524648281977 1.38964488631166
|
38 |
+
A. thaliana coding phastCons 0.03 1.22229866346993 1.05214718664718 1.41314866229905
|
39 |
+
A. thaliana non-coding phastCons 0.03 1.08807283305442 0.943996132749947 1.24876305891899
|
40 |
+
A. thaliana coding LLR 0.03 1.08380955478613 0.925130103269385 1.26286607688666
|
41 |
+
A. thaliana non-coding LLR 0.03 1.60290654043459 1.42029078245583 1.80368905524625
|
42 |
+
A. thaliana coding dot product (layer 11) 0.03 1.58866051995537 1.3893698686209 1.80987474248079
|
43 |
+
A. thaliana non-coding dot product (layer 11) 0.03 2.58364001941363 2.33373912829111 2.8546752824397
|
44 |
+
A. thaliana coding dot product (layer 21) 0.03 0.996133183461066 0.844720739907566 1.16773908243927
|
45 |
+
A. thaliana non-coding dot product (layer 21) 0.03 2.06582308421483 1.84940310436603 2.30219444264047
|
46 |
+
A. thaliana coding dot product (layer 31) 0.03 1.04237819254903 0.886910602335221 1.21809063213958
|
47 |
+
A. thaliana non-coding dot product (layer 31) 0.03 2.11267804993853 1.8938651612622 2.35146388895535
|
48 |
+
A. thaliana coding dot product (layer 40) 0.03 1.23930809668863 1.06756264031319 1.43182573656651
|
49 |
+
A. thaliana non-coding dot product (layer 40) 0.03 2.35652015082284 2.12354592052939 2.6097999717561
|
50 |
+
A. thaliana coding GPN 0.04 1.18038682595108 1.03432564539768 1.3421696499752
|
51 |
+
A. thaliana non-coding GPN 0.04 1.48632945019287 1.33306314561803 1.65341906655882
|
52 |
+
A. thaliana coding phyloP 0.04 1.18157887749402 1.03506374464616 1.34386708009336
|
53 |
+
A. thaliana non-coding phyloP 0.04 1.2020562574825 1.06800687619484 1.34903810311453
|
54 |
+
A. thaliana coding phastCons 0.04 1.18543281608856 1.03898158676034 1.34754190769936
|
55 |
+
A. thaliana non-coding phastCons 0.04 1.08949071109693 0.963334600951261 1.22833487552266
|
56 |
+
A. thaliana coding LLR 0.04 1.10438734809818 0.963966489676656 1.26032756215295
|
57 |
+
A. thaliana non-coding LLR 0.04 1.49215345935172 1.3386820524722 1.65946746170896
|
58 |
+
A. thaliana coding dot product (layer 11) 0.04 1.52884601775814 1.35794680998799 1.71645355289076
|
59 |
+
A. thaliana non-coding dot product (layer 11) 0.04 2.50076655040727 2.28538865066211 2.73263339860938
|
60 |
+
A. thaliana coding dot product (layer 21) 0.04 1.02927877318171 0.894300469142291 1.17967633185661
|
61 |
+
A. thaliana non-coding dot product (layer 21) 0.04 2.1013878287509 1.90945063363795 2.30881165973883
|
62 |
+
A. thaliana coding dot product (layer 31) 0.04 1.05026689969085 0.913578020723768 1.20233207351624
|
63 |
+
A. thaliana non-coding dot product (layer 31) 0.04 2.05429535288686 1.86536569971145 2.25853318983591
|
64 |
+
A. thaliana coding dot product (layer 40) 0.04 1.25213032338587 1.10082764733946 1.41932968876037
|
65 |
+
A. thaliana non-coding dot product (layer 40) 0.04 2.18004895628444 1.98488755101312 2.39076095502702
|
66 |
+
A. thaliana coding GPN 0.05 1.19774726995602 1.06475478199342 1.3435051587008
|
67 |
+
A. thaliana non-coding GPN 0.05 1.44779988470034 1.31144357804664 1.59527389213163
|
68 |
+
A. thaliana coding phyloP 0.05 1.18230976391146 1.05048714168907 1.32688410199608
|
69 |
+
A. thaliana non-coding phyloP 0.05 1.15722841011739 1.03885310118241 1.28604376057543
|
70 |
+
A. thaliana coding phastCons 0.05 1.15196773527778 1.0218984039543 1.2947674960409
|
71 |
+
A. thaliana non-coding phastCons 0.05 1.00680796170396 0.897939057008922 1.12579652847575
|
72 |
+
A. thaliana coding LLR 0.05 1.09779957717192 0.971497677119463 1.23669946360079
|
73 |
+
A. thaliana non-coding LLR 0.05 1.41285418645614 1.27849002573493 1.55829469738091
|
74 |
+
A. thaliana coding dot product (layer 11) 0.05 1.4654382367406 1.31477362943656 1.62976454971543
|
75 |
+
A. thaliana non-coding dot product (layer 11) 0.05 2.33032243138904 2.14326813820111 2.53034555672067
|
76 |
+
A. thaliana coding dot product (layer 21) 0.05 1.06832362573167 0.943865578075569 1.20528000265378
|
77 |
+
A. thaliana non-coding dot product (layer 21) 0.05 2.11201860480956 1.93764146934321 2.29895005055324
|
78 |
+
A. thaliana coding dot product (layer 31) 0.05 1.07035321979091 0.945650178709713 1.20753642170338
|
79 |
+
A. thaliana non-coding dot product (layer 31) 0.05 2.01564146130028 1.84658881909769 2.19716444692717
|
80 |
+
A. thaliana coding dot product (layer 40) 0.05 1.20591550009589 1.07218738488266 1.3525178012126
|
81 |
+
A. thaliana non-coding dot product (layer 40) 0.05 2.07839222724193 1.90667420193793 2.26269204593029
|
Figures/Fig7_paneld.txt
ADDED
@@ -0,0 +1,55 @@
|
|
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|
|
|
|
|
|
|
|
|
1 |
+
Model1 Model2 r Layer
|
2 |
+
GPN GPN NA Loss-based
|
3 |
+
phyloP GPN -0.20430223352512 Loss-based
|
4 |
+
phastCons GPN -0.0988748514289571 Loss-based
|
5 |
+
GPN LLR 0.594225893848547 Loss-based
|
6 |
+
phyloP LLR -0.133516632221117 Loss-based
|
7 |
+
phastCons LLR -0.0358971601734904 Loss-based
|
8 |
+
GPN cos similarity 0.0573209639597964 11
|
9 |
+
phyloP cos similarity 0.00233138491226243 11
|
10 |
+
phastCons cos similarity 0.0248488140472222 11
|
11 |
+
GPN dot product -0.0935924070591606 11
|
12 |
+
phyloP dot product -0.115887001390502 11
|
13 |
+
phastCons dot product -0.177584590910111 11
|
14 |
+
GPN l1 distance -0.0778989339721649 11
|
15 |
+
phyloP l1 distance 0.00685386455309636 11
|
16 |
+
phastCons l1 distance -0.0310017670716644 11
|
17 |
+
GPN l2 distance -0.0830159041999567 11
|
18 |
+
phyloP l2 distance 0.00422985416066335 11
|
19 |
+
phastCons l2 distance -0.0366067676484995 11
|
20 |
+
GPN cos similarity 0.0656942093351704 21
|
21 |
+
phyloP cos similarity 0.00678946387997435 21
|
22 |
+
phastCons cos similarity 0.0291039251133519 21
|
23 |
+
GPN dot product -0.133552573268592 21
|
24 |
+
phyloP dot product -0.0998713277683583 21
|
25 |
+
phastCons dot product -0.135953571130837 21
|
26 |
+
GPN l1 distance -0.102875558990518 21
|
27 |
+
phyloP l1 distance -0.00893751608057503 21
|
28 |
+
phastCons l1 distance -0.0481006669057204 21
|
29 |
+
GPN l2 distance -0.103498931570725 21
|
30 |
+
phyloP l2 distance -0.00921390539952009 21
|
31 |
+
phastCons l2 distance -0.0501028937746948 21
|
32 |
+
GPN cos similarity 0.0358596116768626 31
|
33 |
+
phyloP cos similarity -0.00228886948737331 31
|
34 |
+
phastCons cos similarity 0.0102150000652027 31
|
35 |
+
GPN dot product -0.123673103793413 31
|
36 |
+
phyloP dot product -0.0771467998085015 31
|
37 |
+
phastCons dot product -0.101970126555535 31
|
38 |
+
GPN l1 distance -0.0908150470593039 31
|
39 |
+
phyloP l1 distance 0.000297805618807892 31
|
40 |
+
phastCons l1 distance -0.0259016534709807 31
|
41 |
+
GPN l2 distance -0.0740172196305742 31
|
42 |
+
phyloP l2 distance 0.00229576468778455 31
|
43 |
+
phastCons l2 distance -0.0225394945339547 31
|
44 |
+
GPN cos similarity 0.0491586785072186 40
|
45 |
+
phyloP cos similarity 0.00222711329754801 40
|
46 |
+
phastCons cos similarity 0.0238743510053775 40
|
47 |
+
GPN dot product -0.0261837904102534 40
|
48 |
+
phyloP dot product -0.0693059004207869 40
|
49 |
+
phastCons dot product -0.127992271052942 40
|
50 |
+
GPN l1 distance -0.0788263269630498 40
|
51 |
+
phyloP l1 distance 0.00246841658677939 40
|
52 |
+
phastCons l1 distance -0.0304553887788611 40
|
53 |
+
GPN l2 distance -0.0802090769456271 40
|
54 |
+
phyloP l2 distance 0.00189805646307345 40
|
55 |
+
phastCons l2 distance -0.0318934924590018 40
|
Figures/Fig8_panela.txt
ADDED
@@ -0,0 +1,770 @@
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|
1 |
+
FPR TPR cutoff Species
|
2 |
+
0 0 0.9993863 M. esculenta
|
3 |
+
0 0.00253164556962025 0.9987588 M. esculenta
|
4 |
+
0 0.00506329113924051 0.9969193 M. esculenta
|
5 |
+
0 0.00759493670886076 0.99685484 M. esculenta
|
6 |
+
0 0.010126582278481 0.99524176 M. esculenta
|
7 |
+
0 0.0126582278481013 0.9951438 M. esculenta
|
8 |
+
0 0.0151898734177215 0.99500954 M. esculenta
|
9 |
+
0 0.0177215189873418 0.99432296 M. esculenta
|
10 |
+
0 0.020253164556962 0.99403894 M. esculenta
|
11 |
+
0 0.0227848101265823 0.9939257 M. esculenta
|
12 |
+
0 0.0253164556962025 0.99155027 M. esculenta
|
13 |
+
0 0.0278481012658228 0.99152064 M. esculenta
|
14 |
+
0 0.030379746835443 0.9899673 M. esculenta
|
15 |
+
0 0.0329113924050633 0.98917305 M. esculenta
|
16 |
+
0 0.0354430379746835 0.98862815 M. esculenta
|
17 |
+
0 0.0379746835443038 0.98820513 M. esculenta
|
18 |
+
0 0.0405063291139241 0.987435 M. esculenta
|
19 |
+
0 0.0430379746835443 0.9874179 M. esculenta
|
20 |
+
0 0.0455696202531646 0.98722214 M. esculenta
|
21 |
+
0 0.0481012658227848 0.98653 M. esculenta
|
22 |
+
0 0.0506329113924051 0.98624355 M. esculenta
|
23 |
+
0 0.0531645569620253 0.9861407 M. esculenta
|
24 |
+
0 0.0556962025316456 0.985868 M. esculenta
|
25 |
+
0 0.0582278481012658 0.9849381 M. esculenta
|
26 |
+
0 0.0607594936708861 0.98467475 M. esculenta
|
27 |
+
0 0.0632911392405063 0.98426706 M. esculenta
|
28 |
+
0 0.0658227848101266 0.98390055 M. esculenta
|
29 |
+
0 0.0683544303797468 0.98286813 M. esculenta
|
30 |
+
0 0.0708860759493671 0.9822648 M. esculenta
|
31 |
+
0 0.0734177215189873 0.9819119 M. esculenta
|
32 |
+
0 0.0759493670886076 0.981721 M. esculenta
|
33 |
+
0 0.0784810126582278 0.9813573 M. esculenta
|
34 |
+
0 0.0810126582278481 0.97986245 M. esculenta
|
35 |
+
0 0.0835443037974684 0.9795567 M. esculenta
|
36 |
+
0.00268096514745308 0.0835443037974684 0.9790615 M. esculenta
|
37 |
+
0.00268096514745308 0.0860759493670886 0.9789475 M. esculenta
|
38 |
+
0.00268096514745308 0.0886075949367089 0.9787072 M. esculenta
|
39 |
+
0.00268096514745308 0.0911392405063291 0.97859114 M. esculenta
|
40 |
+
0.00268096514745308 0.0936708860759494 0.9781865 M. esculenta
|
41 |
+
0.00268096514745308 0.0962025316455696 0.9779579 M. esculenta
|
42 |
+
0.00536193029490617 0.0962025316455696 0.9770656 M. esculenta
|
43 |
+
0.00536193029490617 0.0987341772151899 0.97597325 M. esculenta
|
44 |
+
0.00536193029490617 0.10126582278481 0.9751472 M. esculenta
|
45 |
+
0.00536193029490617 0.10379746835443 0.9750424 M. esculenta
|
46 |
+
0.00536193029490617 0.106329113924051 0.9750097 M. esculenta
|
47 |
+
0.00536193029490617 0.108860759493671 0.974787 M. esculenta
|
48 |
+
0.00536193029490617 0.111392405063291 0.97434837 M. esculenta
|
49 |
+
0.00536193029490617 0.113924050632911 0.9743128 M. esculenta
|
50 |
+
0.00536193029490617 0.116455696202532 0.97326875 M. esculenta
|
51 |
+
0.00536193029490617 0.118987341772152 0.97199327 M. esculenta
|
52 |
+
0.00536193029490617 0.121518987341772 0.9715275 M. esculenta
|
53 |
+
0.00536193029490617 0.124050632911392 0.9707381 M. esculenta
|
54 |
+
0.00536193029490617 0.126582278481013 0.9703124 M. esculenta
|
55 |
+
0.00536193029490617 0.129113924050633 0.9702023 M. esculenta
|
56 |
+
0.00536193029490617 0.131645569620253 0.9700501 M. esculenta
|
57 |
+
0.00536193029490617 0.134177215189873 0.9698841 M. esculenta
|
58 |
+
0.00536193029490617 0.136708860759494 0.96957326 M. esculenta
|
59 |
+
0.00536193029490617 0.139240506329114 0.9693652 M. esculenta
|
60 |
+
0.00536193029490617 0.141772151898734 0.9693494 M. esculenta
|
61 |
+
0.00536193029490617 0.144303797468354 0.969276 M. esculenta
|
62 |
+
0.00536193029490617 0.146835443037975 0.9672984 M. esculenta
|
63 |
+
0.00536193029490617 0.149367088607595 0.9666686 M. esculenta
|
64 |
+
0.00536193029490617 0.151898734177215 0.9660681 M. esculenta
|
65 |
+
0.00536193029490617 0.154430379746835 0.96594363 M. esculenta
|
66 |
+
0.00536193029490617 0.156962025316456 0.9656844 M. esculenta
|
67 |
+
0.00536193029490617 0.159493670886076 0.96534157 M. esculenta
|
68 |
+
0.00536193029490617 0.162025316455696 0.9645039 M. esculenta
|
69 |
+
0.00536193029490617 0.164556962025316 0.964413 M. esculenta
|
70 |
+
0.00536193029490617 0.167088607594937 0.9638329 M. esculenta
|
71 |
+
0.00536193029490617 0.169620253164557 0.96329933 M. esculenta
|
72 |
+
0.00536193029490617 0.172151898734177 0.9612809 M. esculenta
|
73 |
+
0.00536193029490617 0.174683544303797 0.96092594 M. esculenta
|
74 |
+
0.00804289544235925 0.174683544303797 0.9608111 M. esculenta
|
75 |
+
0.00804289544235925 0.177215189873418 0.9606031 M. esculenta
|
76 |
+
0.00804289544235925 0.179746835443038 0.96054167 M. esculenta
|
77 |
+
0.00804289544235925 0.182278481012658 0.96038866 M. esculenta
|
78 |
+
0.00804289544235925 0.184810126582278 0.960182 M. esculenta
|
79 |
+
0.0107238605898123 0.184810126582278 0.95928174 M. esculenta
|
80 |
+
0.0107238605898123 0.187341772151899 0.9580579 M. esculenta
|
81 |
+
0.0107238605898123 0.189873417721519 0.9573414 M. esculenta
|
82 |
+
0.0107238605898123 0.192405063291139 0.9565803 M. esculenta
|
83 |
+
0.0107238605898123 0.19493670886076 0.9557293 M. esculenta
|
84 |
+
0.0107238605898123 0.19746835443038 0.955552 M. esculenta
|
85 |
+
0.0107238605898123 0.2 0.95480466 M. esculenta
|
86 |
+
0.0107238605898123 0.20253164556962 0.954645 M. esculenta
|
87 |
+
0.0107238605898123 0.205063291139241 0.9543146 M. esculenta
|
88 |
+
0.0107238605898123 0.207594936708861 0.9541371 M. esculenta
|
89 |
+
0.0107238605898123 0.210126582278481 0.953622 M. esculenta
|
90 |
+
0.0134048257372654 0.210126582278481 0.9528796 M. esculenta
|
91 |
+
0.0134048257372654 0.212658227848101 0.9525732 M. esculenta
|
92 |
+
0.0134048257372654 0.215189873417722 0.952484 M. esculenta
|
93 |
+
0.0134048257372654 0.217721518987342 0.9512517 M. esculenta
|
94 |
+
0.0134048257372654 0.220253164556962 0.9506809 M. esculenta
|
95 |
+
0.0134048257372654 0.222784810126582 0.95001096 M. esculenta
|
96 |
+
0.0134048257372654 0.225316455696203 0.94974345 M. esculenta
|
97 |
+
0.0134048257372654 0.227848101265823 0.9474569 M. esculenta
|
98 |
+
0.0134048257372654 0.230379746835443 0.94704413 M. esculenta
|
99 |
+
0.0134048257372654 0.232911392405063 0.9462451 M. esculenta
|
100 |
+
0.0134048257372654 0.235443037974684 0.9458727 M. esculenta
|
101 |
+
0.0134048257372654 0.237974683544304 0.9452074 M. esculenta
|
102 |
+
0.0134048257372654 0.240506329113924 0.9440861 M. esculenta
|
103 |
+
0.0134048257372654 0.243037974683544 0.94375366 M. esculenta
|
104 |
+
0.0134048257372654 0.245569620253165 0.943509 M. esculenta
|
105 |
+
0.0134048257372654 0.248101265822785 0.94347405 M. esculenta
|
106 |
+
0.0134048257372654 0.250632911392405 0.94319665 M. esculenta
|
107 |
+
0.0134048257372654 0.253164556962025 0.94244283 M. esculenta
|
108 |
+
0.0134048257372654 0.255696202531646 0.94219697 M. esculenta
|
109 |
+
0.0134048257372654 0.258227848101266 0.9420517 M. esculenta
|
110 |
+
0.0134048257372654 0.260759493670886 0.94156826 M. esculenta
|
111 |
+
0.0134048257372654 0.263291139240506 0.9412148 M. esculenta
|
112 |
+
0.0134048257372654 0.265822784810127 0.94100475 M. esculenta
|
113 |
+
0.0134048257372654 0.268354430379747 0.9409753 M. esculenta
|
114 |
+
0.0134048257372654 0.270886075949367 0.9409381 M. esculenta
|
115 |
+
0.0160857908847185 0.270886075949367 0.9409155 M. esculenta
|
116 |
+
0.0160857908847185 0.273417721518987 0.94043976 M. esculenta
|
117 |
+
0.0187667560321716 0.273417721518987 0.93859434 M. esculenta
|
118 |
+
0.0187667560321716 0.275949367088608 0.9384093 M. esculenta
|
119 |
+
0.0214477211796247 0.275949367088608 0.93737555 M. esculenta
|
120 |
+
0.0241286863270777 0.275949367088608 0.9369982 M. esculenta
|
121 |
+
0.0241286863270777 0.278481012658228 0.93681276 M. esculenta
|
122 |
+
0.0241286863270777 0.281012658227848 0.93641096 M. esculenta
|
123 |
+
0.0268096514745308 0.281012658227848 0.9361122 M. esculenta
|
124 |
+
0.0268096514745308 0.283544303797468 0.9347635 M. esculenta
|
125 |
+
0.0268096514745308 0.286075949367089 0.93424666 M. esculenta
|
126 |
+
0.0268096514745308 0.288607594936709 0.9337358 M. esculenta
|
127 |
+
0.0268096514745308 0.291139240506329 0.9333036 M. esculenta
|
128 |
+
0.0268096514745308 0.293670886075949 0.9328631 M. esculenta
|
129 |
+
0.0268096514745308 0.29620253164557 0.93265426 M. esculenta
|
130 |
+
0.0268096514745308 0.29873417721519 0.93260723 M. esculenta
|
131 |
+
0.0294906166219839 0.29873417721519 0.9306925 M. esculenta
|
132 |
+
0.0294906166219839 0.30126582278481 0.9302738 M. esculenta
|
133 |
+
0.032171581769437 0.30126582278481 0.9294623 M. esculenta
|
134 |
+
0.032171581769437 0.30379746835443 0.92914754 M. esculenta
|
135 |
+
0.032171581769437 0.306329113924051 0.9283173 M. esculenta
|
136 |
+
0.032171581769437 0.308860759493671 0.9277129 M. esculenta
|
137 |
+
0.032171581769437 0.311392405063291 0.92675334 M. esculenta
|
138 |
+
0.032171581769437 0.313924050632911 0.9264587 M. esculenta
|
139 |
+
0.032171581769437 0.316455696202532 0.9248005 M. esculenta
|
140 |
+
0.032171581769437 0.318987341772152 0.92471904 M. esculenta
|
141 |
+
0.032171581769437 0.321518987341772 0.9231463 M. esculenta
|
142 |
+
0.0348525469168901 0.321518987341772 0.92065096 M. esculenta
|
143 |
+
0.0348525469168901 0.324050632911392 0.9204882 M. esculenta
|
144 |
+
0.0348525469168901 0.326582278481013 0.92006284 M. esculenta
|
145 |
+
0.0348525469168901 0.329113924050633 0.9191198 M. esculenta
|
146 |
+
0.0348525469168901 0.331645569620253 0.91898876 M. esculenta
|
147 |
+
0.0375335120643432 0.331645569620253 0.91890013 M. esculenta
|
148 |
+
0.0375335120643432 0.334177215189873 0.9184826 M. esculenta
|
149 |
+
0.0375335120643432 0.336708860759494 0.9178354 M. esculenta
|
150 |
+
0.0375335120643432 0.339240506329114 0.91717064 M. esculenta
|
151 |
+
0.0402144772117962 0.339240506329114 0.91697437 M. esculenta
|
152 |
+
0.0402144772117962 0.341772151898734 0.91675377 M. esculenta
|
153 |
+
0.0402144772117962 0.344303797468354 0.91636014 M. esculenta
|
154 |
+
0.0402144772117962 0.346835443037975 0.9160401 M. esculenta
|
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Figures/Fig8_panelb.txt
ADDED
@@ -0,0 +1,1001 @@
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|
1 |
+
region_id pos idx abs_log2FC
|
2 |
+
Chromosome13:27346902-27347901 27347266 364 0.000224431952540817
|
3 |
+
Chromosome07:25136427-25137426 25137108 681 0.000371491362162368
|
4 |
+
Chromosome06:27252852-27253851 27253324 472 0.000408694241880174
|
5 |
+
Chromosome04:7417702-7418701 7418158 456 0.00041563059799301
|
6 |
+
Chromosome05:1777352-1778351 1778027 675 0.000462034789606079
|
7 |
+
Chromosome17:24226877-24227876 24227529 652 0.000582742290819247
|
8 |
+
Chromosome03:835502-836501 836183 681 0.000710808271973576
|
9 |
+
Chromosome15:1201177-1202176 1201696 519 0.000836328239703928
|
10 |
+
Chromosome10:20661602-20662601 20662259 657 0.0008567596059643
|
11 |
+
Chromosome04:26351202-26352201 26351673 471 0.000899318886581076
|
12 |
+
Chromosome17:24901627-24902626 24901947 320 0.000957464928798647
|
13 |
+
Chromosome13:27844827-27845826 27845505 678 0.00104510687004629
|
14 |
+
Chromosome09:21737727-21738726 21738135 408 0.00109418251969964
|
15 |
+
Chromosome15:11363302-11364301 11363902 600 0.00121151802960585
|
16 |
+
Chromosome06:1501252-1502251 1501722 470 0.00121771919095645
|
17 |
+
Chromosome09:5571002-5572001 5571473 471 0.00125007121171645
|
18 |
+
Chromosome11:20965902-20966901 20966575 673 0.0012805146335125
|
19 |
+
Chromosome13:8695302-8696301 8695617 315 0.00134865293965378
|
20 |
+
Chromosome11:27010252-27011251 27010867 615 0.00136977177425645
|
21 |
+
Chromosome18:10597127-10598126 10597731 604 0.0014075335831907
|
22 |
+
Chromosome16:22953302-22954301 22953988 686 0.00142382656045894
|
23 |
+
Chromosome15:646677-647676 647257 580 0.0014459574239284
|
24 |
+
Chromosome09:2068002-2069001 2068302 300 0.0014696502844392
|
25 |
+
Chromosome14:16375227-16376226 16375779 552 0.00152585407757113
|
26 |
+
Chromosome05:1309977-1310976 1310368 391 0.00157052691511028
|
27 |
+
Chromosome01:30082702-30083701 30083095 393 0.00170748097647038
|
28 |
+
Chromosome06:13926627-13927626 13927036 409 0.00176903029397992
|
29 |
+
Chromosome18:1097852-1098851 1098274 422 0.00179268468568085
|
30 |
+
Chromosome01:33698727-33699726 33699394 667 0.00184756494112953
|
31 |
+
Chromosome11:26247277-26248276 26247897 620 0.00188229286488622
|
32 |
+
Chromosome14:11550877-11551876 11551179 302 0.00188248284507715
|
33 |
+
Chromosome02:10199177-10200176 10199804 627 0.00188527554617976
|
34 |
+
Chromosome17:23449302-23450301 23449775 473 0.00193408807423037
|
35 |
+
Chromosome17:24905377-24906376 24905796 419 0.00199895862092042
|
36 |
+
Chromosome16:25564602-25565601 25565025 423 0.00201448217014422
|
37 |
+
Chromosome06:735327-736326 735996 669 0.00204048526363295
|
38 |
+
Chromosome01:22839552-22840551 22839963 411 0.0020444103312916
|
39 |
+
Chromosome17:21513202-21514201 21513878 676 0.00207678288424065
|
40 |
+
Chromosome07:19539877-19540876 19540208 331 0.00212330149655501
|
41 |
+
Chromosome10:25237477-25238476 25238039 562 0.00217315737039042
|
42 |
+
Chromosome01:30684002-30685001 30684698 696 0.00220883965035644
|
43 |
+
Chromosome14:8887102-8888101 8887653 551 0.00221467215289117
|
44 |
+
Chromosome04:25409702-25410701 25410286 584 0.00227547917332243
|
45 |
+
Chromosome05:19085152-19086151 19085664 512 0.00232269398485917
|
46 |
+
Chromosome08:1759402-1760401 1760011 609 0.00233842603199015
|
47 |
+
Chromosome11:23112027-23113026 23112441 414 0.00235462955768253
|
48 |
+
Chromosome07:11421577-11422576 11422194 617 0.00239493227866433
|
49 |
+
Chromosome11:9111802-9112801 9112220 418 0.00239499825726286
|
50 |
+
Chromosome01:23487377-23488376 23487975 598 0.00239662300526929
|
51 |
+
Chromosome14:3754652-3755651 3755275 623 0.00239681080065495
|
52 |
+
Chromosome08:22848377-22849376 22849061 684 0.00241255793814258
|
53 |
+
Chromosome14:13530327-13531326 13530701 374 0.00241379446327965
|
54 |
+
Chromosome04:27547777-27548776 27548333 556 0.00244021921177711
|
55 |
+
Chromosome15:6236677-6237676 6237320 643 0.00248198384081035
|
56 |
+
Chromosome05:3193452-3194451 3194031 579 0.00251583846328618
|
57 |
+
Chromosome15:1711527-1712526 1712146 619 0.00253868237387453
|
58 |
+
Chromosome17:16690902-16691901 16691257 355 0.00254585938855324
|
59 |
+
Chromosome09:5291902-5292901 5292474 572 0.00255801323286179
|
60 |
+
Chromosome02:3224177-3225176 3224501 324 0.00258719145018459
|
61 |
+
Chromosome18:9213252-9214251 9213907 655 0.00259850187878781
|
62 |
+
Chromosome05:5168202-5169201 5168672 470 0.00261541224608925
|
63 |
+
Chromosome14:6657052-6658051 6657629 577 0.002666452610246
|
64 |
+
Chromosome06:23361002-23362001 23361690 688 0.00269142861076821
|
65 |
+
Chromosome06:10210677-10211676 10211260 583 0.00271408585072934
|
66 |
+
Chromosome02:27633677-27634676 27634252 575 0.00272627489890761
|
67 |
+
Chromosome14:6589402-6590401 6589931 529 0.00273952378040715
|
68 |
+
Chromosome12:28493627-28494626 28494039 412 0.00281765833561584
|
69 |
+
Chromosome12:4470627-4471626 4470985 358 0.00281878482534407
|
70 |
+
Chromosome08:27145277-27146276 27145886 609 0.00282900158790899
|
71 |
+
Chromosome14:20593627-20594626 20593946 319 0.0028508363220089
|
72 |
+
Chromosome15:7977477-7978476 7978174 697 0.00285124667279492
|
73 |
+
Chromosome05:1136827-1137826 1137473 646 0.00286770000195637
|
74 |
+
Chromosome05:2491952-2492951 2492434 482 0.00286780854280144
|
75 |
+
Chromosome06:21856327-21857326 21856829 502 0.00286815338467248
|
76 |
+
Chromosome01:27964302-27965301 27964875 573 0.00290397340963753
|
77 |
+
Chromosome04:24381702-24382701 24382209 507 0.00291208001089982
|
78 |
+
Chromosome01:21939077-21940076 21939602 525 0.00291520852480587
|
79 |
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Chromosome02:3454352-3455351 3454668 316 0.00303782790614934
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Chromosome03:24492852-24493851 24493362 510 0.00307897222173448
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Chromosome11:26196377-26197376 26197070 693 0.00317582801417134
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Chromosome03:24286652-24287651 24287032 380 0.00352593163925058
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Chromosome01:27204902-27205901 27205285 383 0.00357228955276328
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Chromosome14:24508677-24509676 24509310 633 0.00365626009014324
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Chromosome11:4816602-4817601 4817265 663 0.00370706175459575
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Chromosome18:5648102-5649101 5648769 667 0.00378058841584
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Chromosome01:31737327-31738326 31737984 657 0.00383401794234021
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Chromosome03:4116502-4117501 4116830 328 0.00383609692887628
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Chromosome01:30562152-30563151 30562586 434 0.00384954596891966
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Chromosome12:25454402-25455401 25454723 321 0.00391465181028803
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Chromosome03:4280152-4281151 4280553 401 0.00396118610083674
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Chromosome15:14647252-14648251 14647822 570 0.00396480517695776
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Chromosome09:4420652-4421651 4421040 388 0.00401117285111031
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Chromosome05:5073902-5074901 5074347 445 0.00401688460615758
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Chromosome18:7242052-7243051 7242542 490 0.00402172824715965
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Chromosome16:27046852-27047851 27047344 492 0.00403627947369724
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Chromosome11:11312727-11313726 11313080 353 0.00405093676291994
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Chromosome15:1609752-1610751 1610260 508 0.00410658820640946
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Chromosome10:24188152-24189151 24188791 639 0.00410695333413228
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Chromosome06:25415027-25416026 25415407 380 0.00411346756740779
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Chromosome16:22516877-22517876 22517499 622 0.00413578631112034
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Chromosome06:1661427-1662426 1662026 599 0.00416261030455647
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Chromosome08:488727-489726 489028 301 0.00416314846063853
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Chromosome03:26116702-26117701 26117093 391 0.00416427040493244
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Chromosome09:27759102-27760101 27759513 411 0.00420936193900623
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Chromosome18:4559527-4560526 4560127 600 0.00421647883713101
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Chromosome17:18242727-18243726 18243138 411 0.00423269246720404
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Chromosome04:1628952-1629951 1629564 612 0.00423862044344799
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Chromosome15:8866577-8867576 8867224 647 0.00427026694887336
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Chromosome02:18802727-18803726 18803088 361 0.00431329423001204
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Chromosome02:967977-968976 968531 554 0.004316692101143
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Chromosome15:2885502-2886501 2886167 665 0.00439684741129286
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Chromosome16:24403802-24404801 24404156 354 0.00441485191881898
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Chromosome10:1593252-1594251 1593581 329 0.00445199290648872
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Chromosome18:1573052-1574051 1573481 429 0.00446375233893776
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Chromosome03:25781002-25782001 25781504 502 0.00448913275978968
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Chromosome14:20046552-20047551 20046868 316 0.00448945617851685
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Chromosome18:18274502-18275501 18275027 525 0.00449391949091154
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Chromosome01:24264302-24265301 24264775 473 0.00451321573446386
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Chromosome05:25407077-25408076 25407483 406 0.00452696205383108
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Chromosome12:5487027-5488026 5487422 395 0.00454502882195849
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Chromosome01:4723352-4724351 4723694 342 0.00455729341301713
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Chromosome03:21169102-21170101 21169487 385 0.00456014816103816
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Chromosome09:5546127-5547126 5546700 573 0.00456589885263515
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Chromosome02:3029977-3030976 3030436 459 0.00457700678498485
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Chromosome13:1908302-1909301 1908901 599 0.00461129244088664
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Chromosome05:20190027-20191026 20190613 586 0.00462087449234759
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Chromosome07:1672177-1673176 1672673 496 0.00462229860162638
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Chromosome14:7524877-7525876 7525537 660 0.00466632498334791
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Chromosome02:3175102-3176101 3175627 525 0.00469070208487678
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Chromosome15:15861077-15862076 15861652 575 0.00471174641066017
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Chromosome14:8732552-8733551 8733027 475 0.00471220601838843
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Chromosome16:3527377-3528376 3527893 516 0.00477683866962945
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Chromosome09:23992052-23993051 23992718 666 0.00477757191847074
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Chromosome13:4486627-4487626 4486961 334 0.00485152994579938
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Chromosome04:22617352-22618351 22617930 578 0.00485763460733149
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Chromosome15:4049977-4050976 4050413 436 0.00487309122706369
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Chromosome01:23366277-23367276 23366959 682 0.0049035886751321
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Chromosome14:7426902-7427901 7427351 449 0.00492136148934923
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Chromosome06:16184252-16185251 16184913 661 0.00495489794736577
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Chromosome14:6203052-6204051 6203368 316 0.0049558157065144
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Chromosome18:5802677-5803676 5803170 493 0.00500239107867628
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Chromosome07:23890127-23891126 23890443 316 0.00502255602139382
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Chromosome17:13546802-13547801 13547417 615 0.00503603133982435
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Chromosome03:17126152-17127151 17126512 360 0.00504257990012478
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Chromosome14:11170452-11171451 11171019 567 0.00505135927943194
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Chromosome12:3843677-3844676 3844137 460 0.00507679146508702
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Chromosome16:27766227-27767226 27766850 623 0.00508895209630674
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Chromosome02:583427-584426 583908 481 0.00512166725980693
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Chromosome01:34574952-34575951 34575502 550 0.00512708117395953
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Chromosome13:1009802-1010801 1010140 338 0.00514855362860007
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Chromosome13:25863352-25864351 25863929 577 0.00520777200879812
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Chromosome04:25389002-25390001 25389573 571 0.005208509584566
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Chromosome08:19323302-19324301 19323909 607 0.00522439015454834
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Chromosome05:11854752-11855751 11855352 600 0.00524142520175225
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Chromosome05:537027-538026 537543 516 0.00524608194434778
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Chromosome05:10531902-10532901 10532453 551 0.00525173557076176
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Chromosome14:11199802-11200801 11200465 663 0.00530799552691275
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Chromosome10:19051477-19052476 19052161 684 0.00531874249230798
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Chromosome13:5850352-5851351 5850762 410 0.00532417928234907
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Chromosome16:27581027-27582026 27581721 694 0.00532734860670542
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Chromosome09:4505652-4506651 4505968 316 0.00532770295260124
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Chromosome11:20249877-20250876 20250389 512 0.00532788401040315
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Chromosome05:9500302-9501301 9500676 374 0.00532895619184701
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Chromosome02:5761802-5762801 5762368 566 0.00534982045635937
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Chromosome12:17535152-17536151 17535655 503 0.00545234701363067
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Chromosome01:33113352-33114351 33113740 388 0.00545766996785464
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Chromosome02:12361927-12362926 12362241 314 0.00557108243544713
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Chromosome09:28723177-28724176 28723807 630 0.00557135757892367
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Chromosome17:22888127-22889126 22888441 314 0.00557176678075989
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Chromosome02:12838852-12839851 12839212 360 0.00557374119485335
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Chromosome18:18105602-18106601 18106228 626 0.00558539548068978
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Chromosome05:22614777-22615776 22615174 397 0.00559343105685585
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Chromosome05:23817027-23818026 23817673 646 0.00564610504268212
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Chromosome06:21419702-21420701 21420355 653 0.00564984487769091
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Chromosome12:2634952-2635951 2635321 369 0.00566142883716716
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Chromosome11:16190177-16191176 16190539 362 0.00570636636343366
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Chromosome13:27098627-27099626 27098976 349 0.00571087874257415
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Chromosome01:17135677-17136676 17136023 346 0.00571557363834413
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Chromosome09:17598052-17599051 17598749 697 0.0057205229899432
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Chromosome04:867752-868751 868397 645 0.00577301699971309
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Chromosome02:8146227-8147226 8146556 329 0.00587327723193186
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Chromosome07:3652702-3653701 3653025 323 0.00589493552061266
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Chromosome10:5433327-5434326 5433769 442 0.00593176320388848
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Chromosome14:11894602-11895601 11895194 592 0.00594956366600238
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Chromosome04:4075977-4076976 4076373 396 0.0059819060736393
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Chromosome01:20656852-20657851 20657408 556 0.00602902907248305
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Chromosome08:26953852-26954851 26954339 487 0.00609439453103787
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Chromosome03:10159927-10160926 10160581 654 0.00618587732693767
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Chromosome04:912352-913351 913024 672 0.00624187973982185
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Chromosome01:24829077-24830076 24829637 560 0.00627285905581275
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Chromosome14:7527302-7528301 7527782 480 0.00630362242180898
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Chromosome17:14920702-14921701 14921364 662 0.00633271429043919
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Chromosome03:9791627-9792626 9791957 330 0.00633316471420988
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Chromosome08:6476252-6477251 6476888 636 0.006380828461315
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Chromosome14:13317577-13318576 13318047 470 0.00639652533050743
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Chromosome15:1923402-1924401 1923844 442 0.00642748155157196
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Chromosome07:25723052-25724051 25723445 393 0.0064277704888303
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Chromosome05:4388677-4389676 4389124 447 0.00646637881504855
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Chromosome01:17197452-17198451 17197909 457 0.00648556450870767
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Chromosome01:25255302-25256301 25255655 353 0.00649226622694031
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Chromosome16:2190127-2191126 2190536 409 0.00649888544570223
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Chromosome16:2508077-2509076 2508716 639 0.00651298495652314
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Chromosome06:20692077-20693076 20692590 513 0.00651651323173889
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Chromosome06:8605702-8606701 8606102 400 0.00653097794587212
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Chromosome08:27271227-27272226 27271683 456 0.00653487556038282
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Chromosome15:11664652-11665651 11665243 591 0.0065424655706743
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Chromosome02:11028852-11029851 11029190 338 0.00654592176758483
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Chromosome11:24340252-24341251 24340717 465 0.00659423396713747
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Chromosome13:1453302-1454301 1453985 683 0.00659555093647806
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Chromosome07:5197752-5198751 5198425 673 0.00664450750845656
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Chromosome09:10584102-10585101 10584656 554 0.00664748133306085
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Chromosome06:13393852-13394851 13394409 557 0.00668776028642292
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Chromosome09:9930877-9931876 9931203 326 0.00669459195108209
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Chromosome18:24130452-24131451 24131104 652 0.00670532418309671
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Chromosome01:32538402-32539401 32538771 369 0.00672346992191684
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Chromosome15:2982727-2983726 2983258 531 0.00677531649283794
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Chromosome08:11421502-11422501 11421859 357 0.00677537033718885
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Chromosome13:23260277-23261276 23260869 592 0.00677574112676281
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Chromosome02:22937802-22938801 22938459 657 0.00681336760259035
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Chromosome05:10287127-10288126 10287592 465 0.00681731990374901
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Chromosome09:6162302-6163301 6162867 565 0.0068309483253324
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Chromosome17:24709977-24710976 24710446 469 0.00683382636809219
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Chromosome06:23349402-23350401 23349870 468 0.00683621759467547
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Chromosome01:32666202-32667201 32666763 561 0.00685814972965168
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Chromosome18:9961702-9962701 9962180 478 0.00688641095147724
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Chromosome11:12103327-12104326 12103661 334 0.0068920242886439
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Chromosome06:17058677-17059676 17059098 421 0.00689679080157277
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Chromosome14:7761202-7762201 7761658 456 0.00690121467072912
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Chromosome15:1532752-1533751 1533397 645 0.00691148129758236
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Chromosome15:9003877-9004876 9004204 327 0.00691434916415064
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Chromosome14:10380327-10381326 10380755 428 0.0069639943118925
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Chromosome03:9391727-9392726 9392119 392 0.00697565050685138
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Chromosome05:3250702-3251701 3251287 585 0.0069786910979047
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Chromosome02:7204502-7205501 7204948 446 0.00699237698369496
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Chromosome02:7112477-7113476 7112961 484 0.00700861124993194
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Chromosome01:33498927-33499926 33499564 637 0.00701075803434173
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Chromosome05:23001277-23002276 23001971 694 0.00702238679974704
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Chromosome09:15916727-15917726 15917056 329 0.00704580452007174
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Chromosome05:27183752-27184751 27184223 471 0.00706189813689901
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Chromosome01:2289077-2290076 2289712 635 0.00706189976725366
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Chromosome12:27848402-27849401 27848848 446 0.00709105732756043
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Chromosome01:32257877-32258876 32258508 631 0.00715035640230772
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Chromosome01:19447552-19448551 19448078 526 0.00715916118891356
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Chromosome05:16061002-16062001 16061500 498 0.00716472700381631
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Chromosome03:21025602-21026601 21026114 512 0.00717335943002904
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Chromosome12:25647152-25648151 25647633 481 0.00717509614376782
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Chromosome17:21174777-21175776 21175257 480 0.00720284377398148
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Chromosome18:4732452-4733451 4733132 680 0.00724061425974016
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Chromosome02:11506352-11507351 11506792 440 0.00730378515435263
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Chromosome08:26896677-26897676 26897022 345 0.00730733766952512
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Chromosome14:12558452-12559451 12559131 679 0.0073083866772087
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Chromosome14:4900827-4901826 4901237 410 0.00731475528803376
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Chromosome05:27788252-27789251 27788597 345 0.00731695341141255
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Chromosome09:6843377-6844376 6843968 591 0.00731766839652549
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Chromosome12:16336152-16337151 16336610 458 0.00732851794514492
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Chromosome08:25990102-25991101 25990532 430 0.00735563954868209
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Chromosome17:26734802-26735801 26735226 424 0.0073696837416512
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Chromosome04:3771052-3772051 3771734 682 0.00736986329045751
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Chromosome03:5226352-5227351 5226890 538 0.00737267932509682
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Chromosome06:26947227-26948226 26947781 554 0.00737707454830846
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Chromosome06:24006377-24007376 24007060 683 0.00737975692931475
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Chromosome13:25107477-25108476 25107798 321 0.00738345042109353
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Chromosome09:22141077-22142076 22141390 313 0.00739181168391853
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Chromosome05:6251802-6252801 6252314 512 0.00739440762631711
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Chromosome16:5779977-5780976 5780442 465 0.00744916811601814
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Chromosome08:5887927-5888926 5888523 596 0.00745324264197732
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Chromosome15:9933027-9934026 9933493 466 0.00746803933568534
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Chromosome03:23822127-23823126 23822563 436 0.0074751201461254
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Chromosome17:21411677-21412676 21412194 517 0.0074758417379011
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Chromosome01:30939902-30940901 30940236 334 0.00748223561629583
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Chromosome11:25899102-25900101 25899657 555 0.00748278158762616
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Chromosome06:20394752-20395751 20395070 318 0.00748548047416665
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Chromosome15:11365077-11366076 11365544 467 0.00749487232779347
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Chromosome12:10470652-10471651 10471312 660 0.00749492303515984
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Chromosome11:1903252-1904251 1903599 347 0.00751556770936149
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Chromosome08:12776927-12777926 12777361 434 0.00754927542462592
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Chromosome13:10164727-10165726 10165201 474 0.0075749665469895
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Chromosome14:7402577-7403576 7403047 470 0.00760727280459406
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Chromosome11:21585602-21586601 21586190 588 0.00760844244540966
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Chromosome04:28583327-28584326 28583977 650 0.00761566320673156
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Chromosome11:742577-743576 743174 597 0.00764674398966874
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Chromosome09:24167452-24168451 24167778 326 0.00765267826885636
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Chromosome14:2326427-2327426 2326812 385 0.00766341750568389
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Chromosome16:23261902-23262901 23262216 314 0.0076866939002515
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Chromosome07:4504177-4505176 4504673 496 0.0076954416682574
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Chromosome18:7905577-7906576 7905905 328 0.00770783734087666
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Chromosome08:32620852-32621851 32621249 397 0.00772144380938756
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Chromosome03:23868852-23869851 23869424 572 0.00772500795025285
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Chromosome18:7662552-7663551 7663070 518 0.00773524445195068
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Chromosome02:6226852-6227851 6227504 652 0.00773558814126271
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Chromosome01:11584377-11585376 11584812 435 0.00775851917270966
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Chromosome12:26210102-26211101 26210623 521 0.00776622327829502
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Chromosome05:2135477-2136476 2136052 575 0.00778254433277711
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Chromosome16:28035077-28036076 28035562 485 0.00778820830420725
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Chromosome09:22678002-22679001 22678624 622 0.00778837238134213
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Chromosome08:4564477-4565476 4564979 502 0.00780060609952351
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Chromosome15:1159477-1160476 1159972 495 0.00781381192001769
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Chromosome16:28360677-28361676 28361327 650 0.00782731485370506
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Chromosome16:27257952-27258951 27258384 432 0.00783158594733989
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Chromosome18:23578052-23579051 23578476 424 0.00783317776324117
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Chromosome01:25541327-25542326 25541684 357 0.00783795835268934
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Chromosome13:23228727-23229726 23229324 597 0.00784978851487032
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Chromosome05:1217102-1218101 1217691 589 0.00785990918611383
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Chromosome11:15306402-15307401 15306839 437 0.00786550026289743
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Chromosome08:11749077-11750076 11749543 466 0.00789293146001195
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Chromosome14:23806352-23807351 23806958 606 0.00789478292879482
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Chromosome05:25178452-25179451 25178931 479 0.00791424022646212
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Chromosome01:11531702-11532701 11532097 395 0.00794730284909422
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Chromosome15:20812752-20813751 20813414 662 0.00794807975535668
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Chromosome13:6210352-6211351 6210973 621 0.00795512627770501
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Chromosome18:13511052-13512051 13511503 451 0.00795817765333537
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Chromosome15:11770627-11771626 11771150 523 0.0079737268777914
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Chromosome02:10913102-10914101 10913580 478 0.00800418022900385
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Chromosome04:22066852-22067851 22067164 312 0.00801489867459636
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Chromosome08:24814477-24815476 24814785 308 0.00803714325878416
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Chromosome13:24937977-24938976 24938389 412 0.00803845265839318
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Chromosome06:16562552-16563551 16563038 486 0.00809149528415546
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Chromosome01:29121502-29122501 29121934 432 0.00809522119799254
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Chromosome14:6453677-6454676 6453994 317 0.00810846883255783
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Chromosome06:14058702-14059701 14059227 525 0.00810942439896001
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Chromosome05:2240827-2241826 2241370 543 0.00812864979461755
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Chromosome08:1966452-1967451 1966810 358 0.00814365132121911
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Chromosome16:21426227-21427226 21426755 528 0.00815878267284607
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Chromosome11:748477-749476 748975 498 0.00820539606338212
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Chromosome02:7372352-7373351 7372996 644 0.00821145783471842
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Chromosome18:25044277-25045276 25044863 586 0.00821947922514557
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Chromosome06:22876952-22877951 22877280 328 0.00822907489454633
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Chromosome10:23788477-23789476 23789158 681 0.00825343545626473
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Chromosome01:26935002-26936001 26935329 327 0.00826320303801359
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Chromosome09:5533402-5534401 5533778 376 0.00827787382262474
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Chromosome13:6810452-6811451 6810981 529 0.00828888656376328
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Chromosome01:4061877-4062876 4062368 491 0.00830881947729083
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Chromosome06:22681702-22682701 22682385 683 0.00831079838430288
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Chromosome02:14798702-14799701 14799281 579 0.00832446605244169
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Chromosome11:25397302-25398301 25397931 629 0.00833317875178534
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Chromosome03:1681702-1682701 1682334 632 0.00834428513855531
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Chromosome16:23897802-23898801 23898490 688 0.0083543288040284
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Chromosome15:1151527-1152526 1151998 471 0.00835530311566811
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Chromosome09:3775652-3776651 3776036 384 0.00841395587974433
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Chromosome12:2459227-2460226 2459645 418 0.00842674937209264
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Chromosome01:30181352-30182351 30181955 603 0.00843561206712988
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Chromosome17:18738527-18739526 18739101 574 0.00844596955509797
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Chromosome09:25413327-25414326 25413899 572 0.00849097222527768
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Chromosome02:11122577-11123576 11123143 566 0.00849352554338191
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Chromosome18:3725277-3726276 3725790 513 0.00849707725343307
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Chromosome13:24640552-24641551 24640976 424 0.0085100174408439
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Chromosome14:5269352-5270351 5269817 465 0.00856897046567526
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Chromosome04:2866152-2867151 2866709 557 0.00857331730718107
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Chromosome12:2501952-2502951 2502380 428 0.00858101590777622
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Chromosome16:24504527-24505526 24505121 594 0.00858421042904506
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Chromosome07:2391377-2392376 2391840 463 0.00859144341794742
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Chromosome06:1138852-1139851 1139308 456 0.00861643091031225
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Chromosome09:28663877-28664876 28664229 352 0.00863493164342786
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Chromosome11:26301602-26302601 26301995 393 0.00865070113985011
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Chromosome05:22896177-22897176 22896827 650 0.00865703336923118
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Chromosome06:19164727-19165726 19165153 426 0.00866016723272384
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Chromosome08:7491552-7492551 7491997 445 0.00871117210499434
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Chromosome02:1730502-1731501 1731074 572 0.00871223259189639
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Chromosome05:25899327-25900326 25899956 629 0.00872371348067668
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Chromosome01:28966677-28967676 28967059 382 0.0087261704531433
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Chromosome04:26126452-26127451 26126801 349 0.00873272967645547
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Chromosome15:20466552-20467551 20467096 544 0.00876600050023958
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Chromosome05:6381052-6382051 6381684 632 0.00877464741502259
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Chromosome03:1871077-1872076 1871519 442 0.00878139058164647
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Chromosome04:28674827-28675826 28675387 560 0.00879866340971056
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Chromosome08:7803377-7804376 7803908 531 0.0088127993641598
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Chromosome15:3672877-3673876 3673226 349 0.00883489550631707
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Chromosome03:11858227-11859226 11858810 583 0.00883715297757616
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Chromosome15:4981277-4982276 4981690 413 0.00885012830348544
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Chromosome17:14856177-14857176 14856837 660 0.00890481814372196
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Chromosome01:21521652-21522651 21522274 622 0.00892719813567313
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Chromosome10:2406502-2407501 2406941 439 0.00895237731311171
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Chromosome02:9511652-9512651 9512081 429 0.00895765466737142
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Chromosome17:19399252-19400251 19399866 614 0.00896700956093347
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Chromosome03:24059177-24060176 24059813 636 0.00899795900669846
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Chromosome13:13717627-13718626 13718155 528 0.009007806280666
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Chromosome16:24521902-24522901 24522500 598 0.00901975917399953
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Chromosome17:8959027-8960026 8959457 430 0.00904230416425866
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Chromosome02:11564127-11565126 11564612 485 0.00905982636370212
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Chromosome14:6716377-6717376 6716919 542 0.00906747375522045
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Chromosome10:11914677-11915676 11915210 533 0.00909945992512276
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Chromosome05:10053752-10054751 10054193 441 0.00912192067943263
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Chromosome02:2693577-2694576 2694137 560 0.00914750520484027
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Chromosome12:11333077-11334076 11333404 327 0.00915038230169025
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Chromosome01:7028152-7029151 7028467 315 0.00915866920760906
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Chromosome15:9490452-9491451 9490893 441 0.00916657485832894
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Chromosome11:20596577-20597576 20597008 431 0.00918068220132034
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Chromosome15:18891877-18892876 18892445 568 0.0091878551886993
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Chromosome17:17355027-17356026 17355698 671 0.00919780934183645
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Chromosome12:26966877-26967876 26967324 447 0.0092006741669855
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Chromosome10:25732427-25733426 25732911 484 0.00920406608966978
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Chromosome04:19859177-19860176 19859702 525 0.00920800929516805
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Chromosome07:24644752-24645751 24645420 668 0.00922224847654952
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Chromosome10:2720652-2721651 2720983 331 0.00924461632170013
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Chromosome05:640377-641376 640734 357 0.00924489902994465
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Chromosome05:5868827-5869826 5869293 466 0.00925597683557055
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Chromosome05:6287927-6288926 6288279 352 0.00929071621846855
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Chromosome10:15639202-15640201 15639738 536 0.00929237282965141
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Chromosome07:24630777-24631776 24631332 555 0.00930707776674387
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Chromosome10:4772877-4773876 4773232 355 0.00932433995028401
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Chromosome09:23738127-23739126 23738718 591 0.00932717933084115
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Chromosome01:4719352-4720351 4719953 601 0.0093301343009087
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Chromosome03:752102-753101 752521 419 0.00933589059859675
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Chromosome12:31368002-31369001 31368464 462 0.00934465045955184
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Chromosome13:6819952-6820951 6820401 449 0.00967192874698813
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Chromosome03:678727-679726 679055 328 0.00976892269348711
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Chromosome17:23446052-23447051 23446357 305 0.00982536510743178
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Chromosome09:16871052-16872051 16871658 606 0.00994908017370854
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Chromosome12:11441952-11442951 11442257 305 0.0100164212987453
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Chromosome16:26997927-26998926 26998411 484 0.0100287807518026
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Chromosome03:28212152-28213151 28212689 537 0.0100400317013789
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Chromosome12:754177-755176 754744 567 0.0100486326937533
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Chromosome05:14117102-14118101 14117723 621 0.0100535387444487
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Chromosome02:12770777-12771776 12771384 607 0.0100617312191417
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Chromosome09:23305852-23306851 23306411 559 0.010067938484139
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Chromosome15:9455977-9456976 9456514 537 0.0101263880536694
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Chromosome07:21246452-21247451 21246767 315 0.0101417791025482
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Chromosome03:2566477-2567476 2566869 392 0.01016260443603
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Chromosome04:28253652-28254651 28254136 484 0.0102289608813358
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Chromosome12:4402552-4403551 4403101 549 0.010257801160377
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Chromosome06:8303827-8304826 8304259 432 0.0102839745020104
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Chromosome06:2011102-2012101 2011587 485 0.0103978756666196
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Chromosome09:28219752-28220751 28220186 434 0.0104267445199465
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Chromosome08:14747102-14748101 14747407 305 0.0104287700553999
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Chromosome18:6147127-6148126 6147747 620 0.010438831593275
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Chromosome17:14619227-14620226 14619590 363 0.0104939285446146
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Chromosome03:13547452-13548451 13547780 328 0.0105490210514655
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Chromosome06:14536352-14537351 14536980 628 0.0105650006192095
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Chromosome14:2718352-2719351 2718653 301 0.0105670665898854
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Chromosome11:24915027-24916026 24915726 699 0.0105862809541415
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Chromosome01:26498852-26499851 26499462 610 0.0105992136150172
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Chromosome11:25569477-25570476 25569948 471 0.0106196592828289
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Chromosome16:2490052-2491051 2490618 566 0.0106251299498115
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Chromosome07:22418352-22419351 22418754 402 0.0106342863572351
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Chromosome15:5065202-5066201 5065662 460 0.0106857628734879
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Chromosome13:25773177-25774176 25773565 388 0.0106907846226852
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Chromosome12:27370327-27371326 27370872 545 0.0107646341343274
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Chromosome03:22888627-22889626 22889176 549 0.0108928799800893
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Chromosome12:29950277-29951276 29950851 574 0.0109223448753044
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Chromosome07:10666402-10667401 10666706 304 0.0109486331458499
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Chromosome04:21444177-21445176 21444697 520 0.0110257966378956
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Chromosome09:12461752-12462751 12462194 442 0.0110436476402493
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Chromosome02:11261427-11262426 11262025 598 0.0111022228564765
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Chromosome15:12625877-12626876 12626197 320 0.0111131946125964
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Chromosome13:25543752-25544751 25544359 607 0.0111406594978707
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Chromosome12:27874602-27875601 27875145 543 0.0111541865934281
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Chromosome09:4915852-4916851 4916349 497 0.0112528153808153
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Chromosome12:4482702-4483701 4483316 614 0.0113139902896099
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Chromosome08:6856652-6857651 6857046 394 0.0114632514151432
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Chromosome03:24339702-24340701 24340180 478 0.0114753595073627
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Chromosome14:6307202-6308201 6307684 482 0.0114845193957089
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Chromosome07:2401052-2402051 2401357 305 0.0114905240225311
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Chromosome03:26811052-26812051 26811371 319 0.0114967672242892
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Chromosome07:23685527-23686526 23686012 485 0.011498523697509
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Chromosome08:1032352-1033351 1032763 411 0.0115114935060029
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Chromosome05:22424352-22425351 22424784 432 0.0115240357652733
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Chromosome06:23394327-23395326 23394889 562 0.0115306677758142
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Chromosome09:22970277-22971276 22970726 449 0.0115314592957967
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Chromosome13:5917952-5918951 5918455 503 0.0115547778535017
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Chromosome04:25373927-25374926 25374371 444 0.0115690682177089
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Chromosome13:11821327-11822326 11821762 435 0.0115913691861895
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Chromosome03:4372152-4373151 4372732 580 0.011625938755412
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Chromosome03:3434377-3435376 3434872 495 0.0116678558861193
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Chromosome01:19960302-19961301 19960875 573 0.0117252731683105
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Chromosome02:11284102-11285101 11284704 602 0.0117834226688321
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Chromosome14:15666202-15667201 15666582 380 0.011868607570727
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Chromosome05:25436302-25437301 25436878 576 0.0119766920997266
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Chromosome16:4638777-4639776 4639161 384 0.0119987635083138
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Chromosome01:3521652-3522651 3522122 470 0.0119996121604177
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Chromosome13:25177277-25178276 25177839 562 0.0120077164202912
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Chromosome08:2482952-2483951 2483508 556 0.0120330929293159
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Chromosome17:18197877-18198876 18198361 484 0.0120750504597885
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Chromosome11:14024427-14025426 14025055 628 0.0120825877899705
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Chromosome03:26632452-26633451 26632982 530 0.0121199430067112
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Chromosome05:8578652-8579651 8579145 493 0.0121526750377196
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Chromosome08:33223602-33224601 33224256 654 0.0121708826341128
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Chromosome09:8831677-8832676 8832094 417 0.0122425319270782
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Chromosome02:3129202-3130201 3129617 415 0.0123400147275311
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Chromosome03:21211652-21212651 21211989 337 0.0123477615844343
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Chromosome05:6281277-6282276 6281627 350 0.0123897078151798
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Chromosome18:1817252-1818251 1817693 441 0.0125187357197784
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Chromosome03:26633752-26634751 26634186 434 0.01254612304717
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Chromosome08:32206502-32207501 32206934 432 0.0125486955722391
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Chromosome13:23625477-23626476 23625918 441 0.0125796427716751
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Chromosome15:2623052-2624051 2623408 356 0.0126611098759798
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Chromosome05:15682027-15683026 15682559 532 0.0126701022975867
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Chromosome03:2926552-2927551 2927157 605 0.012721287748092
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Chromosome07:10887852-10888851 10888214 362 0.012721436023048
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Chromosome08:731602-732601 731997 395 0.012789085169995
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Chromosome18:17321602-17322601 17321969 367 0.0128127279987645
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Chromosome02:6864177-6865176 6864853 676 0.0128220775064196
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Chromosome11:23535427-23536426 23535767 340 0.0128365441374751
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Chromosome15:1661952-1662951 1662648 696 0.0128452459538102
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Chromosome16:16868527-16869526 16868913 386 0.0128570820134407
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Chromosome15:13596752-13597751 13597194 442 0.0128979003605842
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Chromosome16:22270277-22271276 22270690 413 0.012918453019367
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Chromosome01:3611552-3612551 3612247 695 0.0130438800865027
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Chromosome14:6712152-6713151 6712622 470 0.0130542246362073
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Chromosome06:21522127-21523126 21522678 551 0.0130736990703909
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Chromosome01:31454477-31455476 31455007 530 0.0130986562284077
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Chromosome03:1909402-1910401 1909832 430 0.0131384230999767
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Chromosome05:24093102-24094101 24093619 517 0.0131801387390041
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Chromosome03:27547402-27548401 27547880 478 0.0132105921328828
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Chromosome16:27713102-27714101 27713599 497 0.0132568013036738
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Chromosome03:3007202-3008201 3007890 688 0.013274225208022
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Chromosome15:6198277-6199276 6198712 435 0.0133334049430068
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Chromosome07:9520777-9521776 9521148 371 0.0133512406088525
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Chromosome15:10564702-10565701 10565196 494 0.0134924887457049
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Chromosome16:1915977-1916976 1916421 444 0.0135411106677691
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Chromosome13:27928677-27929676 27929278 601 0.0136427421075596
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Chromosome05:23820277-23821276 23820719 442 0.0136485655973553
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Chromosome10:5597827-5598826 5598300 473 0.0137017931216172
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Chromosome01:4501002-4502001 4501640 638 0.0137138261658577
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Chromosome01:23342002-23343001 23342348 346 0.013774420084009
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Chromosome07:23101377-23102376 23101984 607 0.0138025921846169
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Chromosome05:17925727-17926726 17926331 604 0.0138059466515182
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Chromosome07:24940852-24941851 24941370 518 0.0139644533966107
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Chromosome03:27132627-27133626 27133000 373 0.0140023558860177
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Chromosome11:1915527-1916526 1916069 542 0.0140297575247484
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Chromosome02:10893802-10894801 10894400 598 0.014050124072166
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Chromosome15:5175352-5176351 5175932 580 0.0140503198160125
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Chromosome14:7179902-7180901 7180241 339 0.0140541046359807
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Chromosome17:22917327-22918326 22917786 459 0.0140643934943798
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Chromosome17:6838377-6839376 6838788 411 0.0140835767155252
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Chromosome12:19392502-19393501 19392824 322 0.0141048105283184
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Chromosome10:844927-845926 845548 621 0.0141055966968819
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Chromosome14:7694727-7695726 7695185 458 0.0141335866470412
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Chromosome05:831852-832851 832398 546 0.0141647408983946
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Chromosome06:17634777-17635776 17635270 493 0.0142243762563736
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Chromosome13:27474952-27475951 27475468 516 0.01429893107437
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Chromosome01:30899327-30900326 30899706 379 0.0143313622657041
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Chromosome03:24283302-24284301 24283791 489 0.0143904523337568
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Chromosome16:26029977-26030976 26030479 502 0.0144425414638253
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Chromosome11:24273252-24274251 24273810 558 0.0144433358869693
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Chromosome11:26312177-26313176 26312511 334 0.0144580801872376
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Chromosome18:11999327-12000326 11999975 648 0.0145217529191652
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Chromosome17:23372802-23373801 23373354 552 0.01456638977931
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Chromosome12:11651377-11652376 11651827 450 0.014609783443008
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Chromosome10:23555352-23556351 23555934 582 0.0146187540030208
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Chromosome05:21060277-21061276 21060639 362 0.014619296177071
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Chromosome13:7372102-7373101 7372504 402 0.0146556121300734
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Chromosome08:27964777-27965776 27965254 477 0.0146706928952297
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Chromosome01:2488652-2489651 2488961 309 0.0146782509993335
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Chromosome05:4591902-4592901 4592248 346 0.0146967590948801
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Chromosome14:1841627-1842626 1842111 484 0.0147893755529648
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Chromosome01:17054652-17055651 17055215 563 0.0148183767081162
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Chromosome02:19363802-19364801 19364362 560 0.0148229001078481
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Chromosome09:27779452-27780451 27779966 514 0.0148518193471102
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Chromosome12:8141677-8142676 8141988 311 0.0148578870143269
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Chromosome14:10225127-10226126 10225744 617 0.0149185030846857
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Chromosome03:6691077-6692076 6691676 599 0.0150205389162166
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Chromosome11:26857402-26858401 26857919 517 0.0150245172576233
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Chromosome08:2462402-2463401 2462950 548 0.0150309731437327
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Chromosome01:31387877-31388876 31388179 302 0.0150901572044189
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Chromosome08:31329677-31330676 31330053 376 0.0151163007960046
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Chromosome13:24933052-24934051 24933498 446 0.0151253453417308
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Chromosome10:26173827-26174826 26174323 496 0.0151379977044373
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Chromosome14:14927577-14928576 14927976 399 0.0151404305403447
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Chromosome01:1261602-1262601 1262107 505 0.0152282415768202
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Chromosome11:3186702-3187701 3187288 586 0.0152452264489308
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Chromosome16:24979052-24980051 24979565 513 0.0152640151222435
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Chromosome12:9138227-9139226 9138606 379 0.0152864111266929
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Chromosome15:11596677-11597676 11597108 431 0.0153585782443126
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Chromosome09:5788602-5789601 5789033 431 0.0153659942606666
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Chromosome15:1478002-1479001 1478548 546 0.0154030730634602
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Chromosome15:1706802-1707801 1707241 439 0.0154458138107798
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Chromosome07:3259577-3260576 3260136 559 0.0154764131986559
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Chromosome13:27987827-27988826 27988198 371 0.015508143922886
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Chromosome14:11300102-11301101 11300625 523 0.015580194300227
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Chromosome01:10612202-10613201 10612645 443 0.0155842535712756
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Chromosome04:27524127-27525126 27524781 654 0.0157231261822894
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Chromosome02:12078327-12079326 12078794 467 0.0157236965571873
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Chromosome03:6519602-6520601 6520237 635 0.015813681630805
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Chromosome03:28020652-28021651 28021087 435 0.0159023841697153
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Chromosome01:33861352-33862351 33861656 304 0.0160110006159696
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Chromosome05:5766927-5767926 5767252 325 0.0160765858230376
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Chromosome18:7820352-7821351 7820940 588 0.0161168613399329
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Chromosome13:24437052-24438051 24437467 415 0.0162129987066269
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Chromosome14:5356652-5357651 5357065 413 0.016325892193586
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Chromosome07:22670677-22671676 22671333 656 0.0163697169334123
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Chromosome11:6589302-6590301 6589818 516 0.016386595227776
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Chromosome16:11391402-11392401 11391952 550 0.0164190695256938
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Chromosome17:24134377-24135376 24134876 499 0.0164583559981377
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Chromosome01:1106452-1107451 1106920 468 0.0164882849426689
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Chromosome02:8533602-8534601 8533906 304 0.0164893919951214
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Chromosome06:24662702-24663701 24663059 357 0.0165237955193758
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Chromosome11:15004552-15005551 15004857 305 0.0165913800542489
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Chromosome14:2868052-2869051 2868609 557 0.0166336265359265
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Chromosome05:8485527-8486526 8485842 315 0.0167902915924378
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Chromosome08:26723152-26724151 26723481 329 0.0168233122875975
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Chromosome03:10871277-10872276 10871723 446 0.0168876834493451
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Chromosome09:1971177-1972176 1971862 685 0.0169030324565564
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Chromosome11:1101327-1102326 1101885 558 0.0169757021468363
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Chromosome11:6310877-6311876 6311390 513 0.0170561979693682
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Chromosome18:4492627-4493626 4493278 651 0.0170573850441225
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Chromosome10:6712177-6713176 6712647 470 0.0171062220731109
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Chromosome05:5957752-5958751 5958317 565 0.0171553527132308
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Chromosome14:7093027-7094026 7093469 442 0.0171954729449445
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Chromosome06:2282327-2283326 2282952 625 0.017199221652625
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Chromosome13:26137252-26138251 26137847 595 0.017256788995223
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Chromosome01:30768452-30769451 30768811 359 0.0172615062252728
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Chromosome05:11533552-11534551 11533853 301 0.0173152406243192
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Chromosome12:25210052-25211051 25210577 525 0.017346031192727
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Chromosome08:3023427-3024426 3023931 504 0.0173529839315177
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Chromosome09:800602-801601 801101 499 0.017398785817648
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Chromosome07:23799377-23800376 23800012 635 0.0174459418834841
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Chromosome14:7946827-7947826 7947348 521 0.0174954293406661
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Chromosome11:11363352-11364351 11363715 363 0.017602181145055
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Chromosome12:29374102-29375101 29374697 595 0.0176876871375462
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Chromosome11:5569752-5570751 5570294 542 0.0178185888105239
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Chromosome02:4282302-4283301 4282761 459 0.0178713685720526
|
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Chromosome11:9527252-9528251 9527847 595 0.0178922347338316
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Chromosome09:25344802-25345801 25345108 306 0.0179817131232586
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Chromosome13:25054652-25055651 25055105 453 0.0180349326328918
|
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Chromosome16:27482002-27483001 27482627 625 0.0180468422246357
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Chromosome16:3133202-3134201 3133565 363 0.0182086246157145
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Chromosome04:27108327-27109326 27108814 487 0.0182321081597839
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Chromosome04:1492627-1493626 1493237 610 0.0182474814889757
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Chromosome11:26099802-26100801 26100347 545 0.0182928910831271
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Chromosome10:22839952-22840951 22840348 396 0.018358183022338
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Chromosome14:7588577-7589576 7588959 382 0.0184776057574378
|
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Chromosome09:26948602-26949601 26949177 575 0.0186859940257335
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Chromosome01:24064652-24065651 24065162 510 0.0188059221455643
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Chromosome09:7003052-7004051 7003745 693 0.0189088531759342
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Chromosome14:6248902-6249901 6249371 469 0.0189707682575108
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Chromosome09:9271777-9272776 9272155 378 0.0190424141622005
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Chromosome05:5353952-5354951 5354559 607 0.0190987732772043
|
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Chromosome08:1699152-1700151 1699554 402 0.0191027062156978
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Chromosome05:11360727-11361726 11361030 303 0.0191979578675512
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Chromosome05:21932102-21933101 21932630 528 0.0192252938967679
|
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Chromosome01:29331927-29332926 29332623 696 0.0192478302134115
|
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Chromosome04:23343252-23344251 23343937 685 0.0192641699830815
|
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Chromosome17:18454827-18455826 18455352 525 0.0193794616835467
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Chromosome17:26349277-26350276 26349731 454 0.0195341293239688
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Chromosome10:12837777-12838776 12838402 625 0.0195472132566109
|
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Chromosome02:11508977-11509976 11509461 484 0.0195616106311624
|
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Chromosome04:21818302-21819301 21818790 488 0.0196089043921998
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Chromosome11:27205577-27206576 27206030 453 0.0196955656912886
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Chromosome06:18401252-18402251 18401632 380 0.0197296165602547
|
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Chromosome14:4631727-4632726 4632358 631 0.0198529625689724
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Chromosome02:12759202-12760201 12759819 617 0.0198572318165113
|
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Chromosome05:5257777-5258776 5258251 474 0.0199425837156928
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Chromosome17:3728352-3729351 3728823 471 0.0199560752963542
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Chromosome16:27024577-27025576 27025253 676 0.0199840255328078
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Chromosome16:28546327-28547326 28546890 563 0.0202157502655021
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Chromosome06:20706277-20707276 20706696 419 0.0203387563881247
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Chromosome09:21659652-21660651 21660064 412 0.0207642670307235
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Chromosome06:10249152-10250151 10249745 593 0.0209284932918853
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Chromosome04:1010802-1011801 1011328 526 0.0209725069590987
|
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Chromosome11:27268727-27269726 27269063 336 0.0211057927935216
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Chromosome08:3499502-3500501 3499904 402 0.0211895636660587
|
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|
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Chromosome04:24978752-24979751 24979425 673 0.0214620195164273
|
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Chromosome09:26113452-26114451 26114110 658 0.0214639678483223
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Chromosome13:23699802-23700801 23700169 367 0.0215279321195215
|
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Chromosome16:11250677-11251676 11251330 653 0.0215468024991138
|
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Chromosome15:10159352-10160351 10159824 472 0.0215475982297351
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Chromosome08:7174127-7175126 7174585 458 0.0216520973909291
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Chromosome16:5486402-5487401 5486967 565 0.0217495881069241
|
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Chromosome11:24017177-24018176 24017544 367 0.022007095149716
|
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Chromosome01:20015077-20016076 20015496 419 0.0224159205652805
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Chromosome04:3017527-3018526 3017834 307 0.0224599406749997
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Chromosome15:10348152-10349151 10348473 321 0.0227589501156242
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Chromosome05:15300652-15301651 15301228 576 0.0228356926972248
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Chromosome07:24628152-24629151 24628729 577 0.0229014626254985
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Chromosome02:12011452-12012451 12011868 416 0.0230300444280096
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Chromosome10:3389352-3390351 3389934 582 0.0230875284218075
|
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Chromosome12:28524927-28525926 28525551 624 0.0231319685652878
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Chromosome02:1055327-1056326 1055739 412 0.0233957172132621
|
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Chromosome05:13376152-13377151 13376730 578 0.0234084499282161
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Chromosome15:15475277-15476276 15475623 346 0.0237508954275273
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Chromosome13:26498052-26499051 26498501 449 0.0238423454159202
|
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Chromosome15:10346452-10347451 10346933 481 0.0238579973767273
|
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Chromosome14:12792602-12793601 12793122 520 0.023899785158999
|
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Chromosome03:438352-439351 438886 534 0.0244853482479146
|
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Chromosome05:4602427-4603426 4602744 317 0.024565951190778
|
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Chromosome07:22772427-22773426 22772940 513 0.0248278764826302
|
943 |
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Chromosome07:10755202-10756201 10755601 399 0.0248487328986927
|
944 |
+
Chromosome16:3151302-3152301 3151993 691 0.0249561153373285
|
945 |
+
Chromosome09:3091502-3092501 3092060 558 0.0251055176244022
|
946 |
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Chromosome13:6354927-6355926 6355469 542 0.0254007375816705
|
947 |
+
Chromosome17:24126952-24127951 24127364 412 0.0257071706699082
|
948 |
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Chromosome01:10940302-10941301 10940888 586 0.0258261384792721
|
949 |
+
Chromosome17:22248802-22249801 22249190 388 0.0262259609435876
|
950 |
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Chromosome16:1603052-1604051 1603562 510 0.0266700751871023
|
951 |
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Chromosome13:3212702-3213701 3213082 380 0.0268896492281889
|
952 |
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Chromosome01:21231427-21232426 21231892 465 0.0272168529855197
|
953 |
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Chromosome10:12650127-12651126 12650432 305 0.0274244380316498
|
954 |
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Chromosome17:17763127-17764126 17763550 423 0.0278386562463675
|
955 |
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Chromosome05:6224627-6225626 6225259 632 0.0278775697750837
|
956 |
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Chromosome08:33062027-33063026 33062496 469 0.0282128149900294
|
957 |
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Chromosome01:5042127-5043126 5042547 420 0.0282539353069446
|
958 |
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Chromosome11:6968902-6969901 6969327 425 0.0288695005960562
|
959 |
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Chromosome07:2959602-2960601 2960228 626 0.0290400999691393
|
960 |
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Chromosome03:1247227-1248226 1247649 422 0.0292735832294393
|
961 |
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Chromosome16:3270627-3271626 3271007 380 0.0293577471275599
|
962 |
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Chromosome01:25787277-25788276 25787837 560 0.0295564554527417
|
963 |
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Chromosome03:1223902-1224901 1224458 556 0.0297050936660363
|
964 |
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Chromosome13:6081577-6082576 6082180 603 0.0299013621889142
|
965 |
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Chromosome14:15176927-15177926 15177284 357 0.029921567647875
|
966 |
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Chromosome15:11390252-11391251 11390694 442 0.0299680616388123
|
967 |
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Chromosome11:25341752-25342751 25342227 475 0.030528969901771
|
968 |
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Chromosome03:1398752-1399751 1399081 329 0.031722253307783
|
969 |
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Chromosome13:5144377-5145376 5144879 502 0.0326203862446681
|
970 |
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Chromosome09:6581927-6582926 6582511 584 0.0334402770262864
|
971 |
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Chromosome04:28264027-28265026 28264540 513 0.0336627498969025
|
972 |
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Chromosome06:14898677-14899676 14899223 546 0.0340391004874456
|
973 |
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Chromosome08:27535402-27536401 27536005 603 0.0342881368846063
|
974 |
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Chromosome15:2614952-2615951 2615373 421 0.0343936432976715
|
975 |
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Chromosome06:21230052-21231051 21230594 542 0.0352515228915983
|
976 |
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Chromosome08:27955927-27956926 27956575 648 0.0358194827044308
|
977 |
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Chromosome12:26982327-26983326 26982768 441 0.0360023266145845
|
978 |
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Chromosome13:6528077-6529076 6528672 595 0.0381835181073033
|
979 |
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Chromosome02:15381052-15382051 15381446 394 0.0387418675290758
|
980 |
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Chromosome12:15915927-15916926 15916339 412 0.0390314532630447
|
981 |
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Chromosome05:27388877-27389876 27389488 611 0.0392583963313333
|
982 |
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Chromosome03:21605402-21606401 21605977 575 0.0393293673099442
|
983 |
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Chromosome14:11286152-11287151 11286641 489 0.0403440727574295
|
984 |
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Chromosome07:25878077-25879076 25878721 644 0.0412176649358862
|
985 |
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Chromosome12:30041627-30042626 30042125 498 0.0412482053355139
|
986 |
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Chromosome16:26413852-26414851 26414516 664 0.0412541159771216
|
987 |
+
Chromosome09:21992152-21993151 21992728 576 0.0426303407224319
|
988 |
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Chromosome05:27366152-27367151 27366640 488 0.0442919898588116
|
989 |
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Chromosome15:5932177-5933176 5932786 609 0.0466556853446652
|
990 |
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Chromosome16:22816477-22817476 22816915 438 0.0470385653993222
|
991 |
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Chromosome14:11691927-11692926 11692543 616 0.0471121885316292
|
992 |
+
Chromosome03:7492802-7493801 7493386 584 0.0562040260886586
|
993 |
+
Chromosome16:16518377-16519376 16518786 409 0.0573783371385979
|
994 |
+
Chromosome02:9994752-9995751 9995294 542 0.0584615006060283
|
995 |
+
Chromosome17:21159652-21160651 21160244 592 0.0599579726243208
|
996 |
+
Chromosome11:8787727-8788726 8788296 569 0.06499102021238
|
997 |
+
Chromosome05:23704477-23705476 23704893 416 0.0680323257587223
|
998 |
+
Chromosome17:2343952-2344951 2344483 531 0.072973102285785
|
999 |
+
Chromosome03:2701502-2702501 2701867 365 0.101079196841942
|
1000 |
+
Chromosome02:15863252-15864251 15863701 449 0.106771882110652
|
1001 |
+
Chromosome01:6334152-6335151 6334723 571 0.209243037326471
|
Figures/Fig8_panelc.txt
ADDED
@@ -0,0 +1,1201 @@
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1 |
+
pos idx ref alt log2FC
|
2 |
+
6334452 300 G A 0.000307961398172466
|
3 |
+
6334452 300 G C -0.00233032180773865
|
4 |
+
6334452 300 G T -0.00216033554648518
|
5 |
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6334453 301 A C 0.00100804390819419
|
6 |
+
6334453 301 A G -0.000771505380362254
|
7 |
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6334453 301 A T 0.0009754280722157
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8 |
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6334454 302 G A -0.000228177709405058
|
9 |
+
6334454 302 G C 0.00108899369622387
|
10 |
+
6334454 302 G T 7.55767352428152e-05
|
11 |
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6334455 303 C A 0.00349224665560041
|
12 |
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6334455 303 C G 0.00130483759443408
|
13 |
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6334455 303 C T 0.000492909140100536
|
14 |
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6334456 304 T A 0.0039186467638298
|
15 |
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6334456 304 T C 0.000529203415124981
|
16 |
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6334456 304 T G 0.00332914786442278
|
17 |
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6334457 305 A C 0.00181374649610021
|
18 |
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6334457 305 A G 0.000512758143330133
|
19 |
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6334457 305 A T 0.0014995386239049
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20 |
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6334458 306 A C -0.000693539011902934
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21 |
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6334458 306 A G -0.000151855168901211
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22 |
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6334458 306 A T -0.00161501548811131
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23 |
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6334459 307 G A 0.000891245303789969
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24 |
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6334459 307 G C 0.000589100175337644
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25 |
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6334459 307 G T -0.00100528291266872
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26 |
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6334460 308 G A 0.00259053635513778
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27 |
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6334460 308 G C 0.00129120167333853
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28 |
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6334460 308 G T 0.000337335136395169
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29 |
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6334461 309 G A 0.000122197535135948
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6334461 309 G T 6.82833860145644e-05
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6334832 680 T C 0.00172566965248734
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6334843 691 T A 0.00142265831453021
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1197 |
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1198 |
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6334850 698 T G -0.0033901560152412
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1199 |
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6334851 699 T A -0.00105154363511821
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1200 |
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6334851 699 T C -0.00263234853377492
|
1201 |
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6334851 699 T G -0.00332263867342884
|
Figures/Fig8_paneld.txt
ADDED
@@ -0,0 +1,1201 @@
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1 |
+
pos idx ref alt log2FC
|
2 |
+
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3 |
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15863552 300 A G 0.00242106060442093
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4 |
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1104 |
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15863919 667 T G 0.00377695745774864
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15863920 668 T G -0.00177190601012243
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15863921 669 C G 9.97069853498013e-05
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1201 |
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|
Figures/Fig8_panele.txt
ADDED
The diff for this file is too large to render.
See raw diff
|
|
Figures/Fig8_panelf.txt
ADDED
@@ -0,0 +1,1131 @@
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|
1 |
+
GeneNum Observed Predicted Tissue
|
2 |
+
LG15:4066726-4072725 4067642 917 0.00366798601956998
|
3 |
+
LG13:23873942-23879941 23878974 5033 0.00606860526309119
|
4 |
+
LG5:9327352-9333351 9328273 922 0.00647634102610091
|
5 |
+
LG15:4073979-4079978 4074913 935 0.00703043245146121
|
6 |
+
LG3:25385199-25391198 25390278 5080 0.00963483766260823
|
7 |
+
LG12:30852223-30858222 30853386 1164 0.0104491124354988
|
8 |
+
LG15:2760706-2766705 2761592 887 0.0111070433796172
|
9 |
+
LG12:29370862-29376861 29371706 845 0.0115257981086141
|
10 |
+
LG3:23954781-23960780 23955698 918 0.0115663338189089
|
11 |
+
LG10:17938560-17944559 17943572 5013 0.0119125768177534
|
12 |
+
LG7:25247003-25253002 25247893 891 0.0120307753797017
|
13 |
+
LG11:2496401-2502400 2497331 931 0.0120624643009758
|
14 |
+
LG7:3356919-3362918 3361992 5074 0.0121940881902629
|
15 |
+
LG11:11084402-11090401 11089591 5190 0.0124618846302359
|
16 |
+
LG14:12630765-12636764 12631647 883 0.0130611025583244
|
17 |
+
LG1:2694086-2700085 2699211 5126 0.0130897057472945
|
18 |
+
LG14:13445040-13451039 13445909 870 0.0132163822074625
|
19 |
+
LG4:2831623-2837622 2832430 808 0.0132948337144361
|
20 |
+
LG16:26135951-26141950 26141135 5185 0.0135158757973818
|
21 |
+
LG15:12889943-12895942 12890778 836 0.0136782848706829
|
22 |
+
LG7:18387595-18393594 18388512 918 0.0138043142319664
|
23 |
+
LG8:28125426-28131425 28126395 970 0.0142427189269009
|
24 |
+
LG13:13962850-13968849 13968001 5152 0.0142619534869452
|
25 |
+
LG1:22198913-22204912 22204045 5133 0.0143180040898098
|
26 |
+
LG5:14877927-14883926 14883054 5128 0.0146184930850613
|
27 |
+
LG17:20503098-20509097 20508286 5189 0.0150143557065165
|
28 |
+
LG8:2442441-2448440 2443375 935 0.0153695736650729
|
29 |
+
LG18:9023053-9029052 9028101 5049 0.0154334872935586
|
30 |
+
LG9:9914789-9920788 9919831 5043 0.0155351310858815
|
31 |
+
LG12:30049384-30055383 30050311 928 0.0157076416542655
|
32 |
+
LG15:5635245-5641244 5636342 1098 0.0157930202547613
|
33 |
+
LG4:24493929-24499928 24494823 895 0.0159584946065901
|
34 |
+
LG6:23423207-23429206 23428311 5105 0.0159909048809864
|
35 |
+
LG1:29671140-29677139 29672098 959 0.0162766523346389
|
36 |
+
LG4:27990578-27996577 27995483 4906 0.0163051154107528
|
37 |
+
LG11:24507534-24513533 24508510 977 0.0163075064545842
|
38 |
+
LG9:4598973-4604972 4599818 846 0.0163370271198963
|
39 |
+
LG5:797301-803300 802497 5197 0.0165094667249391
|
40 |
+
LG10:20524910-20530909 20525862 953 0.0166777134088614
|
41 |
+
LG2:11571713-11577712 11572733 1021 0.0173029076387072
|
42 |
+
LG4:5374046-5380045 5374973 928 0.0173245212163322
|
43 |
+
LG10:14535396-14541395 14536388 993 0.0173412977721746
|
44 |
+
LG7:6357340-6363339 6358385 1046 0.0173610328833456
|
45 |
+
LG11:24723468-24729467 24724424 957 0.0173846976292528
|
46 |
+
LG9:28785423-28791422 28786304 882 0.0174180872040434
|
47 |
+
LG14:24096040-24102039 24100998 4959 0.0175517437840825
|
48 |
+
LG6:25155203-25161202 25156352 1150 0.0179707832009454
|
49 |
+
LG18:13611194-13617193 13612021 828 0.0180055968736626
|
50 |
+
LG15:4080324-4086323 4081268 945 0.0180956719206652
|
51 |
+
LG1:294373-300372 295350 978 0.0181569331318379
|
52 |
+
LG15:10268042-10274041 10273087 5046 0.0182752433084314
|
53 |
+
LG17:19643378-19649377 19648415 5038 0.0183251321474129
|
54 |
+
LG14:1203185-1209184 1208203 5019 0.0184217527692025
|
55 |
+
LG5:3480813-3486812 3481662 850 0.0184363798081197
|
56 |
+
LG12:26125025-26131024 26130013 4989 0.0186277292118955
|
57 |
+
LG4:9148158-9154157 9149136 979 0.018640602979507
|
58 |
+
LG1:31553580-31559579 31554620 1041 0.0186996889413032
|
59 |
+
LG6:26595909-26601908 26600942 5034 0.0187220417219224
|
60 |
+
LG11:25214012-25220011 25219138 5127 0.0188841595276835
|
61 |
+
LG5:6680959-6686958 6685920 4962 0.0191428859232889
|
62 |
+
LG15:2824809-2830808 2825687 879 0.0191862213685431
|
63 |
+
LG1:31534913-31540912 31535828 916 0.0192819300902658
|
64 |
+
LG10:4061674-4067673 4062518 845 0.0193659410621968
|
65 |
+
LG2:5991990-5997989 5992852 863 0.0195201262912874
|
66 |
+
LG7:20927539-20933538 20928430 892 0.0195492958593989
|
67 |
+
LG13:27010599-27016598 27015796 5198 0.0196510261832065
|
68 |
+
LG10:25461068-25467067 25466207 5140 0.0196931245348023
|
69 |
+
LG10:24245783-24251782 24250940 5158 0.019739075975768
|
70 |
+
LG9:25421928-25427927 25422747 820 0.0197688018907366
|
71 |
+
LG3:17955648-17961647 17960523 4876 0.0197773592404781
|
72 |
+
LG9:28670012-28676011 28670830 819 0.0198272178362518
|
73 |
+
LG12:30859486-30865485 30860340 855 0.0199232423414503
|
74 |
+
LG14:2609827-2615826 2610858 1032 0.0199752854013629
|
75 |
+
LG12:12680128-12686127 12685303 5176 0.0199895420470255
|
76 |
+
LG9:1201307-1207306 1206475 5169 0.0200788052285406
|
77 |
+
LG15:4394457-4400456 4395260 804 0.0200987716993008
|
78 |
+
LG16:1651561-1657560 1652542 982 0.0202940604866556
|
79 |
+
LG3:28311298-28317297 28316452 5155 0.0203197713289223
|
80 |
+
LG8:2852721-2858720 2857780 5060 0.0203386885651829
|
81 |
+
LG10:25851016-25857015 25851981 966 0.0203553814135377
|
82 |
+
LG13:1490055-1496054 1495138 5084 0.0204436652134326
|
83 |
+
LG10:10253588-10259587 10258572 4985 0.0204799134113357
|
84 |
+
LG6:4562250-4568249 4563248 999 0.0206292675954906
|
85 |
+
LG11:26331491-26337490 26336489 4999 0.0207439391560136
|
86 |
+
LG10:21647877-21653876 21648925 1049 0.0208368258683965
|
87 |
+
LG5:3487367-3493366 3488349 983 0.0209244660844287
|
88 |
+
LG14:11471701-11477700 11476731 5031 0.0209440031553544
|
89 |
+
LG11:2478650-2484649 2483590 4941 0.0212055631065258
|
90 |
+
LG17:24263028-24269027 24268186 5159 0.0212838947127878
|
91 |
+
LG12:29267178-29273177 29272140 4963 0.0213902144957141
|
92 |
+
LG15:12671707-12677706 12672716 1010 0.0215067877673722
|
93 |
+
LG1:24250472-24256471 24251367 896 0.0215216544386693
|
94 |
+
LG4:3822297-3828296 3823196 900 0.0215439918157409
|
95 |
+
LG14:426136-432135 427178 1043 0.0215781797448601
|
96 |
+
LG14:9369985-9375984 9375003 5019 0.0216127898175478
|
97 |
+
LG14:8718662-8724661 8719574 913 0.0216394985392138
|
98 |
+
LG12:27185316-27191315 27186228 913 0.0216871332301956
|
99 |
+
LG5:1016-7015 5995 4980 0.0216979740121291
|
100 |
+
LG4:26334140-26340139 26335009 870 0.021760260317804
|
101 |
+
LG4:3736558-3742557 3737570 1013 0.021920733972787
|
102 |
+
LG9:17621160-17627159 17622141 982 0.022190682496151
|
103 |
+
LG14:22674555-22680554 22679649 5095 0.0221948801078265
|
104 |
+
LG3:3133002-3139001 3133869 868 0.0222417480147563
|
105 |
+
LG12:4555000-4560999 4555968 969 0.022248714218687
|
106 |
+
LG4:22024392-22030391 22029560 5169 0.0222833052274407
|
107 |
+
LG5:18038947-18044946 18039787 841 0.0224106102617929
|
108 |
+
LG6:14436791-14442790 14437711 921 0.02250458401603
|
109 |
+
LG7:14789263-14795262 14794210 4948 0.0225207425427723
|
110 |
+
LG12:1179580-1185579 1180513 934 0.0225220953269075
|
111 |
+
LG1:26808472-26814471 26809492 1021 0.0226211071068441
|
112 |
+
LG4:19119737-19125736 19124904 5168 0.0226225002910347
|
113 |
+
LG8:7710699-7716698 7711538 840 0.022844265872229
|
114 |
+
LG3:25600408-25606407 25605472 5065 0.022872281626832
|
115 |
+
LG9:24153314-24159313 24154158 845 0.022952457578488
|
116 |
+
LG6:27197754-27203753 27198735 982 0.0229921725976904
|
117 |
+
LG7:4624666-4630665 4625512 847 0.0230083475448698
|
118 |
+
LG16:4474102-4480101 4479235 5134 0.0230671658531036
|
119 |
+
LG5:4331990-4337989 4332864 875 0.0230995096608963
|
120 |
+
LG13:24756658-24762657 24761587 4930 0.0231352342416457
|
121 |
+
LG10:9477673-9483672 9478569 897 0.0232397286511064
|
122 |
+
LG9:22789205-22795204 22790222 1018 0.0234382526740778
|
123 |
+
LG4:441081-447080 446123 5043 0.0235050211290372
|
124 |
+
LG1:20793104-20799103 20793970 867 0.0235192264411674
|
125 |
+
LG11:2741967-2747966 2747155 5189 0.0235570678209701
|
126 |
+
LG1:33732920-33738919 33733999 1080 0.0235798627070465
|
127 |
+
LG7:714192-720191 719321 5130 0.0237302667527357
|
128 |
+
LG10:26153989-26159988 26154836 848 0.023741097571315
|
129 |
+
LG15:8199072-8205071 8204231 5160 0.0238072665394059
|
130 |
+
LG6:9152496-9158495 9153316 821 0.0238146492839084
|
131 |
+
LG7:527641-533640 532699 5059 0.0239440212324813
|
132 |
+
LG13:2741566-2747565 2746684 5119 0.023967914082743
|
133 |
+
LG14:5662634-5668633 5667534 4901 0.0240404476735176
|
134 |
+
LG5:15826670-15832669 15831824 5155 0.0241294525347664
|
135 |
+
LG11:1417732-1423731 1422876 5145 0.0242440873303198
|
136 |
+
LG11:12337980-12343979 12338812 833 0.0242936184073896
|
137 |
+
LG16:24339988-24345987 24344868 4881 0.0243289601780426
|
138 |
+
LG13:3750872-3756871 3751749 878 0.0244479417684158
|
139 |
+
LG13:8235442-8241441 8240539 5098 0.02447208721772
|
140 |
+
LG2:16629090-16635089 16634220 5131 0.0245261291722036
|
141 |
+
LG2:894540-900539 895378 839 0.0245648825440038
|
142 |
+
LG16:3040540-3046539 3041472 933 0.0245852535389284
|
143 |
+
LG11:10768482-10774481 10773530 5049 0.0245909618514748
|
144 |
+
LG11:4797898-4803897 4803037 5140 0.024664323982433
|
145 |
+
LG16:2398428-2404427 2399404 977 0.0246961617634409
|
146 |
+
LG3:15380159-15386158 15381016 858 0.0248102221738216
|
147 |
+
LG12:30459990-30465989 30460945 956 0.0248686136260981
|
148 |
+
LG1:30567332-30573331 30572515 5184 0.0249043997915619
|
149 |
+
LG1:25137044-25143043 25142126 5083 0.0249653474793548
|
150 |
+
LG2:29206085-29212084 29211112 5028 0.0250102799621217
|
151 |
+
LG7:1865392-1871391 1870582 5191 0.0250284011580351
|
152 |
+
LG10:20520221-20526220 20521127 907 0.0250819726999793
|
153 |
+
LG15:8802094-8808093 8807134 5041 0.0252234372203689
|
154 |
+
LG10:7876651-7882650 7881803 5153 0.0255598727090311
|
155 |
+
LG5:15690227-15696226 15691188 962 0.0257165319794967
|
156 |
+
LG2:10834549-10840548 10839746 5198 0.0257638602770136
|
157 |
+
LG1:6288832-6294831 6289728 897 0.0258999592520971
|
158 |
+
LG8:27378953-27384952 27384099 5147 0.0259559267290619
|
159 |
+
LG17:20428480-20434479 20429297 818 0.0261857185445567
|
160 |
+
LG6:25700134-25706133 25705303 5170 0.0262779156615894
|
161 |
+
LG8:10237880-10243879 10238881 1002 0.0263435450312806
|
162 |
+
LG7:23674323-23680322 23675320 998 0.0263980603996073
|
163 |
+
LG2:20262742-20268741 20263571 830 0.0264258693942982
|
164 |
+
LG11:5362382-5368381 5367572 5191 0.0264456776470304
|
165 |
+
LG14:4193480-4199479 4198467 4988 0.0264745811846524
|
166 |
+
LG16:19909050-19915049 19909883 834 0.0265417081396397
|
167 |
+
LG9:28978763-28984762 28983793 5031 0.0266713913967491
|
168 |
+
LG7:1703559-1709558 1704586 1028 0.0266927087723049
|
169 |
+
LG15:8452232-8458231 8457364 5133 0.0267596753606346
|
170 |
+
LG6:19776847-19782846 19781927 5081 0.0267914905779384
|
171 |
+
LG11:19157980-19163979 19158994 1015 0.0267978900548604
|
172 |
+
LG15:2224230-2230229 2229279 5050 0.0268959927104297
|
173 |
+
LG11:24314173-24320172 24315191 1019 0.0270104320223672
|
174 |
+
LG7:6811829-6817828 6812647 819 0.0270648891222186
|
175 |
+
LG2:1154447-1160446 1159498 5052 0.027098333638085
|
176 |
+
LG4:21647068-21653067 21652212 5145 0.0271098829038193
|
177 |
+
LG6:22501258-22507257 22506415 5158 0.0271718517169664
|
178 |
+
LG12:21082034-21088033 21083080 1047 0.0273847576533591
|
179 |
+
LG6:22075149-22081148 22076140 992 0.0273936642029759
|
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LG8:23807331-23813330 23808399 1069 0.205799050557787
|
1079 |
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LG1:2016293-2022292 2017382 1090 0.212279380073267
|
1080 |
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LG2:26955962-26961961 26956864 903 0.214331541552931
|
1081 |
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LG5:20354619-20360618 20359571 4953 0.214399787434395
|
1082 |
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LG1:27653499-27659498 27654445 947 0.215112372869501
|
1083 |
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LG8:137923-143922 143061 5139 0.217918323383329
|
1084 |
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LG1:32719776-32725775 32720675 900 0.219732301728877
|
1085 |
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LG12:346964-352963 347859 896 0.221752076939171
|
1086 |
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LG14:8191537-8197536 8196656 5120 0.221925819628941
|
1087 |
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LG8:30180162-30186161 30181007 846 0.229044538260037
|
1088 |
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LG10:4594582-4600581 4599752 5171 0.229697020791284
|
1089 |
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LG3:26351922-26357921 26352863 942 0.234150201018414
|
1090 |
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LG15:6330592-6336591 6335717 5126 0.235293694031254
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1091 |
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LG5:21880238-21886237 21885211 4974 0.237494077337693
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1092 |
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LG5:3249974-3255973 3250942 969 0.23812482722031
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1093 |
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LG4:23842774-23848773 23843805 1032 0.238827270749511
|
1094 |
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LG14:1520498-1526497 1525438 4941 0.243304357432059
|
1095 |
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LG4:28045273-28051272 28046380 1108 0.246754264292971
|
1096 |
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LG1:23309842-23315841 23310875 1034 0.248769455678336
|
1097 |
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LG9:23679911-23685910 23684891 4981 0.251528772535648
|
1098 |
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LG12:18661334-18667333 18662478 1145 0.251562691112191
|
1099 |
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LG2:6733573-6739572 6734505 933 0.252432370197628
|
1100 |
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LG13:25175111-25181110 25180190 5080 0.252929488555671
|
1101 |
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LG6:24251885-24257884 24252778 894 0.256080379160735
|
1102 |
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LG6:20527503-20533502 20528316 814 0.257353447576563
|
1103 |
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LG5:7358162-7364161 7359090 929 0.258284644125382
|
1104 |
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LG4:25933660-25939659 25934500 841 0.258465434679323
|
1105 |
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LG1:28258772-28264771 28259680 909 0.261600489565947
|
1106 |
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LG10:15364497-15370496 15369639 5143 0.261948973677079
|
1107 |
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LG8:16708319-16714318 16713290 4972 0.262138029269637
|
1108 |
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LG15:405544-411543 410729 5186 0.263549002029903
|
1109 |
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LG3:3587588-3593587 3588615 1028 0.269532052956223
|
1110 |
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LG1:24985727-24991726 24990894 5168 0.27281510728537
|
1111 |
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LG3:3454033-3460032 3454991 959 0.274022202583618
|
1112 |
+
LG15:3001436-3007435 3006546 5111 0.289944062799193
|
1113 |
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LG7:2206746-2212745 2207593 848 0.302095062978636
|
1114 |
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LG3:26383849-26389848 26384717 869 0.306347190386743
|
1115 |
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LG1:29882423-29888422 29883415 993 0.326841259301402
|
1116 |
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LG8:5627181-5633180 5628014 834 0.327556400159916
|
1117 |
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LG8:25598110-25604109 25603240 5131 0.329385291959177
|
1118 |
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LG4:25400990-25406989 25406175 5186 0.33051577475617
|
1119 |
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LG13:2750754-2756753 2755892 5139 0.337062192717368
|
1120 |
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LG1:23305108-23311107 23306134 1027 0.338109991686732
|
1121 |
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LG6:1156081-1162080 1161139 5059 0.357344520476732
|
1122 |
+
LG4:21341162-21347161 21342137 976 0.359664753041104
|
1123 |
+
LG2:7232750-7238749 7233624 875 0.374071068459841
|
1124 |
+
LG7:23948874-23954873 23953895 5022 0.396874168327747
|
1125 |
+
LG11:455102-461101 456061 960 0.410447956475516
|
1126 |
+
LG7:7198944-7204943 7199876 933 0.41802825001636
|
1127 |
+
LG18:14807601-14813600 14808546 946 0.454123227738666
|
1128 |
+
LG10:23024697-23030696 23025580 884 0.48940763789114
|
1129 |
+
LG15:862119-868118 862946 828 0.598723168634309
|
1130 |
+
LG5:5016504-5022503 5017479 976 0.625104874353933
|
1131 |
+
LG12:27521008-27527007 27521851 844 0.841488469758269
|
Figures/Fig8_panelg.txt
ADDED
@@ -0,0 +1,1201 @@
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Figures/Fig8_panelh.txt
ADDED
@@ -0,0 +1,1201 @@
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|
1 |
+
idx ref alt log2FC
|
2 |
+
-801 A T 0.012469325415523
|
3 |
+
-801 A G 0.00916151191912236
|
4 |
+
-801 A C 0.0345624220735514
|
5 |
+
-802 A T 0.0252651655684069
|
6 |
+
-802 A G 0.0187655193858697
|
7 |
+
-802 A C 0.0172609254344783
|
8 |
+
-803 A T 0.0183795137022369
|
9 |
+
-803 A G 0.0418957914988318
|
10 |
+
-803 A C 0.0243035876593959
|
11 |
+
-804 C T 0.0183061856843901
|
12 |
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-804 C G -0.00161546256740691
|
13 |
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-804 C A -0.00127030031251641
|
14 |
+
-805 T G -0.0040939639703638
|
15 |
+
-805 T C 0.0106390655046008
|
16 |
+
-805 T A 0.0194035117830912
|
17 |
+
-806 T G -0.00785678682765882
|
18 |
+
-806 T C 0.00353930929892538
|
19 |
+
-806 T A -0.0335908056679619
|
20 |
+
-807 C T 0.0184540020717787
|
21 |
+
-807 C G 0.00646570565314094
|
22 |
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-807 C A 0.0135282896352383
|
23 |
+
-808 C T -0.00121560359972508
|
24 |
+
-808 C G 0.00480970962062662
|
25 |
+
-808 C A 0.000622404063589413
|
26 |
+
-809 T G -0.0101462071895826
|
27 |
+
-809 T C 0.0370538680917896
|
28 |
+
-809 T A -0.00252405475584699
|
29 |
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-810 C T 0.00391620939572751
|
30 |
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-810 C G -0.009825515247559
|
31 |
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-810 C A -0.012696008916687
|
32 |
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-811 A T -0.00483033788298656
|
33 |
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-811 A G -0.0160325799680519
|
34 |
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-811 A C -0.0121492613796763
|
35 |
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-812 T G -0.0445409380095423
|
36 |
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-812 T C -0.00986835612351226
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37 |
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-812 T A -0.0118583041470565
|
38 |
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-813 T G -0.0258471127189707
|
39 |
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-813 T C -0.00564424729399722
|
40 |
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-813 T A -0.0262012677364296
|
41 |
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-814 C T -0.0155695138448086
|
42 |
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-814 C G -0.0357405489149872
|
43 |
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-814 C A -0.0174746139923972
|
44 |
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-815 T G -0.0421583032032911
|
45 |
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-815 T C -0.00823002386073021
|
46 |
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-815 T A -0.0163388392610301
|
47 |
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-816 T G -0.044132279489078
|
48 |
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-816 T C -0.000779815100822048
|
49 |
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-816 T A -0.00517345393790471
|
50 |
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-817 T G -0.0614131552556352
|
51 |
+
-817 T C -0.0105985531233249
|
52 |
+
-817 T A -0.0139023467563749
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Figures/Figure2.png
ADDED
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Figures/Figure3.png
ADDED
Git LFS Details
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Figures/Figure4.png
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Git LFS Details
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Figures/Figure5.png
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Git LFS Details
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Figures/Figure6.png
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Git LFS Details
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ADDED
Git LFS Details
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Git LFS Details
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