refactor: var naming

agro-nt-tasks.py

@@ -40,12 +40,15 @@ _TASK_NAMES =  ['poly_a.arabidopsis_thaliana',
                 'poly_a.trifolium_pratense',
                 'poly_a.medicago_truncatula',
                 'poly_a.chlamydomonas_reinhardtii',
-                'poly_a.oryza_sativa_japonica_group']
+                'poly_a.oryza_sativa_japonica_group',
+                'splicing.arabidopsis_thaliana_donor',
+                'splicing.arabidopsis_thaliana_acceptor'
+                ]
 
 
 _TASK_NAME_TO_TYPE = {'poly_a':'binary',
                       'lncrna':'binary',
-                      'splice_site':'binary',}
+                      'splicing':'binary',}
 
 
 class AgroNtTasksConfig(datasets.BuilderConfig):
@@ -58,7 +61,7 @@ class AgroNtTasksConfig(datasets.BuilderConfig):
             **kwargs: keyword arguments forwarded to super.
         """
 
-        self.task,self.specie = task_name.split(".")
+        self.task,self.sub_task = task_name.split(".")
         self.task_type = _TASK_NAME_TO_TYPE[self.task]
 
         super().__init__(
@@ -84,7 +87,7 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
                 {
                     "sequence": datasets.Value("string"),
                     "name": datasets.Value("string"),
-                    "labels": datasets.Value("int8"),
+                    "label": datasets.Value("int8"),
                 }
             )
 
@@ -102,9 +105,9 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
     def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
 
         train_file = dl_manager.download_and_extract(
-            os.path.join(self.config.task, self.config.specie + "_train.fa"))
+            os.path.join(self.config.task, self.config.sub_task + "_train.fa"))
         test_file = dl_manager.download_and_extract(
-            os.path.join(self.config.task, self.config.specie + "_test.fa"))
+            os.path.join(self.config.task, self.config.sub_task + "_test.fa"))
 
         return [
             datasets.SplitGenerator(
@@ -134,11 +137,11 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
         ]
 
     # method parameters are unpacked from `gen_kwargs` as given in `_split_generators`
-    def _generate_examples(self, filepath, split):
+    def _generate_examples(self, filepath):
         with open(filepath, 'r') as f:
             key = 0
             for record in SeqIO.parse(f,'fasta'):
-                    # Yields examples as (key, example) tuples
+                # Yields examples as (key, example) tuples
 
                 split_name = record.name.split("|")
                 name = split_name[0]
@@ -147,6 +150,6 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
                 yield key, {
                     "sequence": str(record.seq),
                     "name": name,
-                    "labels": labels,
+                    "label": labels,
                 }
                 key += 1