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16c544d
1 Parent(s): d626a9c

feat: add chromatin profile support

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Files changed (1) hide show
  1. agro-nt-tasks.py +18 -1
agro-nt-tasks.py CHANGED
@@ -55,7 +55,14 @@ _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
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  'gene_exp.oryza_sativa',
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  'gene_exp.solanum_lycopersicum',
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  'gene_exp.zea_mays',
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- 'gene_exp.arabidopsis_thaliana'
 
 
 
 
 
 
 
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  ]
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@@ -70,6 +77,15 @@ _TASK_INFO = {'poly_a':{'type': 'binary', 'val_set':False},
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  'zea_mays': 23,
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  'solanum_lycopersicum': 10,
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  'oryza_sativa': 7}},
 
 
 
 
 
 
 
 
 
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  }
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  class AgroNtTasksConfig(datasets.BuilderConfig):
@@ -132,6 +148,7 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
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  "labels": datasets.Array2D(shape=(1, num_labels),
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  dtype= "float32")})
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  return datasets.DatasetInfo(
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  # This is the description that will appear on the datasets page.
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  description=_DESCRIPTION,
 
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  'gene_exp.oryza_sativa',
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  'gene_exp.solanum_lycopersicum',
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  'gene_exp.zea_mays',
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+ 'gene_exp.arabidopsis_thaliana',
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+ 'chromatin_access.arabidopis_thaliana',
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+ 'chromatin_access.sorghum_bicolor',
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+ 'chromatin_access.oryza_sativa_ZS97_RS2',
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+ 'chromatin_access.oryza_sativa_MH63_RS2',
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+ 'chromatin_access.zea_mays',
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+ 'chromatin_access.brachypodium_distachyon',
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+ 'chromatin_access.setaria_italica',
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  ]
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  'zea_mays': 23,
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  'solanum_lycopersicum': 10,
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  'oryza_sativa': 7}},
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+ 'chromatin_access':{'type':'multi_label','val_set':True,
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+ 'num_labels':
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+ {'arabidopis_thaliana': 19,
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+ 'sorghum_bicolor': 14,
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+ 'oryza_sativa_ZS97_RS2': 15,
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+ 'oryza_sativa_MH63_RS2': 15,
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+ 'zea_mays': 19,
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+ 'brachypodium_distachyon': 9,
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+ 'setaria_italica': 9}}
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  }
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  class AgroNtTasksConfig(datasets.BuilderConfig):
 
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  "labels": datasets.Array2D(shape=(1, num_labels),
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  dtype= "float32")})
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+
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  return datasets.DatasetInfo(
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  # This is the description that will appear on the datasets page.
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  description=_DESCRIPTION,