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Datasets:
InstaDeepAI
/
plant-genomic-benchmark

Tags:
DNA
Genomics
Plants
DOI:
License:
Dataset card Files Community
2
etrop commited on
Commit
09b0610
•
1 Parent(s): da8a9f3

feat: add promoter strength data/configs

Browse files
Files changed (8) hide show
  1. .gitattributes +6 -0
  2. agro-nt-tasks.py +3 -1
  3. promoter_strength/leaf_test.fa +3 -0
  4. promoter_strength/leaf_train.fa +3 -0
  5. promoter_strength/leaf_validation.fa +3 -0
  6. promoter_strength/protoplast_test.fa +3 -0
  7. promoter_strength/protoplast_train.fa +3 -0
  8. promoter_strength/protoplast_validation.fa +3 -0
.gitattributes CHANGED
@@ -82,3 +82,9 @@ lncrna/z_mays_train.fa filter=lfs diff=lfs merge=lfs -text
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  lncrna/g_max_train.fa filter=lfs diff=lfs merge=lfs -text
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  lncrna/m_esculenta_train.fa filter=lfs diff=lfs merge=lfs -text
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  lncrna/t_aestivum_test.fa filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
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  lncrna/g_max_train.fa filter=lfs diff=lfs merge=lfs -text
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  lncrna/m_esculenta_train.fa filter=lfs diff=lfs merge=lfs -text
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  lncrna/t_aestivum_test.fa filter=lfs diff=lfs merge=lfs -text
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+ promoter_strength/leaf_test.fa filter=lfs diff=lfs merge=lfs -text
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+ promoter_strength/leaf_train.fa filter=lfs diff=lfs merge=lfs -text
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+ promoter_strength/leaf_validation.fa filter=lfs diff=lfs merge=lfs -text
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+ promoter_strength/protoplast_test.fa filter=lfs diff=lfs merge=lfs -text
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+ promoter_strength/protoplast_train.fa filter=lfs diff=lfs merge=lfs -text
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+ promoter_strength/protoplast_validation.fa filter=lfs diff=lfs merge=lfs -text
agro-nt-tasks.py CHANGED
@@ -48,7 +48,9 @@ _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
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  'lncrna.g_max',
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  'lncrna.s_lycopersicum',
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  'lncrna.t_aestivum',
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- 'lncrna.s_bicolor'
 
 
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  ]
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  'lncrna.g_max',
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  'lncrna.s_lycopersicum',
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  'lncrna.t_aestivum',
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+ 'lncrna.s_bicolor',
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+ 'promoter_strength.leaf',
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+ 'promoter_strength.protoplast'
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  ]
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promoter_strength/leaf_test.fa ADDED
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+ size 1495640
promoter_strength/leaf_train.fa ADDED
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promoter_strength/leaf_validation.fa ADDED
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promoter_strength/protoplast_test.fa ADDED
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promoter_strength/protoplast_train.fa ADDED
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promoter_strength/protoplast_validation.fa ADDED
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