etrop commited on
Commit
cc38ba3
1 Parent(s): 561af90

fix file names for pathogenic datasets

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Files changed (1) hide show
  1. genomics-long-range-benchmark.py +2 -2
genomics-long-range-benchmark.py CHANGED
@@ -556,9 +556,9 @@ class VariantEffectPathogenicHandler(GenomicLRATaskHandler):
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  """
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  self.sequence_length = sequence_length
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- if task_name == 'variant_effect_pathogenic_coding':
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  self.data_file_name = "variant_effect_pathogenic/vep_pathogenic_coding.csv"
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- elif task_name == 'variant_effect_pathogenic_non_coding':
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  self.data_file_name = "variant_effect_pathogenic/" \
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  "vep_pathogenic_non_coding_subset.csv" \
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  if subset else "variant_effect_pathogenic/vep_pathogenic_non_coding.csv"
 
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  """
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  self.sequence_length = sequence_length
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+ if task_name == 'variant_effect_pathogenic_clinvar':
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  self.data_file_name = "variant_effect_pathogenic/vep_pathogenic_coding.csv"
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+ elif task_name == 'variant_effect_pathogenic_omim':
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  self.data_file_name = "variant_effect_pathogenic/" \
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  "vep_pathogenic_non_coding_subset.csv" \
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  if subset else "variant_effect_pathogenic/vep_pathogenic_non_coding.csv"