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  - biology
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  - mass-spectrometry
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  - proteomics
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- - de-novo-sequencing
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  size_categories:
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  - 1M<n<10M
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  configs:
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  ## Overview
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- Peptide-spectrum match (PSM) data assembled from 18 public PRIDE proteomics projects, partitioned by sequence identity into train, validation, and test splits for de novo peptide sequencing benchmarks. **This dataset was used to train [InstaNovo](https://doi.org/10.1038/s42256-025-01019-5)** (Eloff, Kalogeropoulos et al., *Nature Machine Intelligence*, 2025).
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- Curated by Jeroen Van Goey (j.vangoey@instadeep.com).
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  ## Dataset Details
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  - **Total rows**: 8,289,063
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  - **PRIDE projects**: 18
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- - **Splitting**: identity-based, no peptide overlap between splits
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  ### Structure
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  ## Acknowledgements
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- > Big thanks to Pathmanaban Ramasamy, Tine Claeys, and Lennart Martens of the CompOmics research group for providing us with this training data.
 
 
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  ## Citation
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  - biology
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  - mass-spectrometry
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  - proteomics
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+ - de-novo-peptide-sequencing
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  size_categories:
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  - 1M<n<10M
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  configs:
 
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  ## Overview
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+ Data assembled from 18 public PRIDE proteomics projects, partitioned into train, validation, and test splits.
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+ This dataset was part of the training data for the _de novo_ peptide sequencing model [InstaNovo](https://github.com/instadeepai/instanovo) ([Eloff, Kalogeropoulos et al., *Nature Machine Intelligence*, 2025](https://doi.org/10.1038/s42256-025-01019-5)).
 
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  ## Dataset Details
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  - **Total rows**: 8,289,063
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  - **PRIDE projects**: 18
 
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  ### Structure
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  ## Acknowledgements
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+ This HuggingFace dataset was created by Jeroen Van Goey (InstaDeep).
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+ Big thanks to Pathmanaban Ramasamy, Tine Claeys, and Lennart Martens of the [CompOmics research group](https://www.compomics.com/) for providing us with this training data.
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  ## Citation
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