| """ | |
| collect data from external sources into species.json | |
| """ | |
| from __future__ import print_function, unicode_literals, absolute_import, division | |
| from collections import OrderedDict | |
| from purl import URL | |
| from tsammalexdata.util import split_ids | |
| def wikipedia_url(s): | |
| url = URL(s) | |
| if url.scheme() in ['http', 'https'] and 'wikipedia.' in url.host(): | |
| return s | |
| def item2spec(item): | |
| spec = OrderedDict() | |
| for k, v in [ | |
| ('id', item['id']), | |
| ('name', item['scientific_name']), | |
| ('kingdom', item['kingdom'].capitalize() or None), | |
| ('order', item['order'].capitalize() or None), | |
| ('family', item['family'].capitalize() or None), | |
| ('genus', item['genus'].capitalize() or None), | |
| ('ecoregions', split_ids(item.get('ecoregions__ids', ''))), | |
| ('countries', split_ids(item.get('countries__ids', ''))), | |
| ('wikipedia_url', wikipedia_url(item.get('wikipedia_url', ''))), | |
| ('eol_id', None), | |
| ('gbif_id', None), | |
| ('catalogueoflife_id', None), | |
| ]: | |
| spec[k] = v | |
| return spec | |