qanastek commited on
Commit
5aa19ef
·
1 Parent(s): cd71611

Update E3C.py

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Files changed (1) hide show
  1. E3C.py +0 -27
E3C.py CHANGED
@@ -174,31 +174,15 @@ class E3C(datasets.GeneratorBasedBuilder):
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  def get_parsed_data(self, filepath: str):
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- print("--- get_parsed_data ---")
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-
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- print(filepath)
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-
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- print("---")
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-
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- print(list(os.walk(filepath)))
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-
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  for root, _, files in os.walk(filepath):
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- print(files)
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-
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  for file in files:
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- print(file)
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-
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  with open(f"{root}/{file}") as soup_file:
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- print(soup_file)
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-
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  soup = BeautifulSoup(soup_file, "xml")
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  text = soup.find("cas:Sofa").get("sofaString")
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- print(text)
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-
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  yield {
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  "CLINENTITY": self.get_clinical_annotations(soup.find_all("custom:CLINENTITY"), text),
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  "EVENT": self.get_annotations(soup.find_all("custom:EVENT"), text),
@@ -210,25 +194,16 @@ class E3C(datasets.GeneratorBasedBuilder):
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  "TOKENS": self.get_annotations(soup.find_all("type4:Token"), text),
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  }
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- print("+++ get_parsed_data out +++")
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-
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  def _generate_examples(self, filepath, split):
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- print(filepath)
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- print(split)
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-
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  all_res = []
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  key = 0
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  parsed_content = self.get_parsed_data(filepath)
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-
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- print(parsed_content)
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  for content in parsed_content:
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- print(content)
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-
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  for sentence in content["SENTENCE"]:
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  tokens = [(
@@ -297,8 +272,6 @@ class E3C(datasets.GeneratorBasedBuilder):
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  })
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  key += 1
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-
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- print("Length: ", len(all_res))
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  if self.config.name.find("clinical") != -1:
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  def get_parsed_data(self, filepath: str):
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  for root, _, files in os.walk(filepath):
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  for file in files:
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  with open(f"{root}/{file}") as soup_file:
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  soup = BeautifulSoup(soup_file, "xml")
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  text = soup.find("cas:Sofa").get("sofaString")
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  yield {
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  "CLINENTITY": self.get_clinical_annotations(soup.find_all("custom:CLINENTITY"), text),
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  "EVENT": self.get_annotations(soup.find_all("custom:EVENT"), text),
 
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  "TOKENS": self.get_annotations(soup.find_all("type4:Token"), text),
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  }
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  def _generate_examples(self, filepath, split):
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  all_res = []
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  key = 0
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  parsed_content = self.get_parsed_data(filepath)
 
 
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  for content in parsed_content:
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  for sentence in content["SENTENCE"]:
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  tokens = [(
 
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  })
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  key += 1
 
 
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  if self.config.name.find("clinical") != -1:
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