parquet-converter
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Update parquet files
Browse files- README.md +0 -16
- data/dev-00000-of-00001.parquet β Seledorn--SwissProt-GO/parquet-dev.parquet +2 -2
- data/test-00000-of-00001.parquet β Seledorn--SwissProt-GO/parquet-test.parquet +2 -2
- data/train-00001-of-00002.parquet β Seledorn--SwissProt-GO/parquet-train-00000-of-00002.parquet +2 -2
- data/train-00000-of-00002.parquet β Seledorn--SwissProt-GO/parquet-train-00001-of-00002.parquet +2 -2
- dataset_infos.json +0 -1
- idx_mapping.json +0 -0
README.md
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---
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language:
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- protein sequences
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datasets:
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- Swissprot
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tags:
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- Protein
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- Gene Ontology
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- GO
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---
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Swissprot is a high quality manually annotated protein database. The dataset contains annotations with the functional properties of the proteins. Here we extract proteins with Gene Ontology labels.
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The dataset is ported from Protinfer: https://github.com/google-research/proteinfer.
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The GO-labels are extracted and indexed, the mapping is provided in `idx_mapping.json`. Proteins without GO tags are removed.
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data/dev-00000-of-00001.parquet β Seledorn--SwissProt-GO/parquet-dev.parquet
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data/test-00000-of-00001.parquet β Seledorn--SwissProt-GO/parquet-test.parquet
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data/train-00001-of-00002.parquet β Seledorn--SwissProt-GO/parquet-train-00000-of-00002.parquet
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data/train-00000-of-00002.parquet β Seledorn--SwissProt-GO/parquet-train-00001-of-00002.parquet
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dataset_infos.json
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{"Seledorn--SwissProt-GO": {"description": "", "citation": "", "homepage": "", "license": "", "features": {"seq": {"dtype": "string", "id": null, "_type": "Value"}, "labels": {"feature": {"dtype": "int64", "id": null, "_type": "Value"}, "length": -1, "id": null, "_type": "Sequence"}, "labels_str": {"dtype": "string", "id": null, "_type": "Value"}, "id": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": "json", "config_name": "default", "version": {"version_str": "0.0.0", "description": null, "major": 0, "minor": 0, "patch": 0}, "splits": {"dev": {"name": "dev", "num_bytes": 93458485, "num_examples": 52841, "dataset_name": "SwissProt-GO"}, "test": {"name": "test", "num_bytes": 92171401, "num_examples": 51751, "dataset_name": "SwissProt-GO"}, "train": {"name": "train", "num_bytes": 739100126, "num_examples": 418015, "dataset_name": "SwissProt-GO"}}, "download_checksums": null, "download_size": 313998115, "post_processing_size": null, "dataset_size": 924730012, "size_in_bytes": 1238728127}}
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idx_mapping.json
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