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| from __future__ import annotations |
|
|
| from collections.abc import Sequence |
|
|
| import numpy as np |
| import torch |
| import torch.nn as nn |
|
|
| from monai.networks.blocks import Convolution, ResidualUnit |
| from monai.networks.layers.convutils import calculate_out_shape, same_padding |
| from monai.networks.layers.factories import Act, Norm |
| from monai.networks.layers.simplelayers import Reshape |
| from monai.utils import ensure_tuple, ensure_tuple_rep |
|
|
| __all__ = ["Regressor"] |
|
|
|
|
| class Regressor(nn.Module): |
| """ |
| This defines a network for relating large-sized input tensors to small output tensors, ie. regressing large |
| values to a prediction. An output of a single dimension can be used as value regression or multi-label |
| classification prediction, an output of a single value can be used as a discriminator or critic prediction. |
| |
| The network is constructed as a sequence of layers, either :py:class:`monai.networks.blocks.Convolution` or |
| :py:class:`monai.networks.blocks.ResidualUnit`, with a final fully-connected layer resizing the output from the |
| blocks to the final size. Each block is defined with a stride value typically used to downsample the input using |
| strided convolutions. In this way each block progressively condenses information from the input into a deep |
| representation the final fully-connected layer relates to a final result. |
| |
| Args: |
| in_shape: tuple of integers stating the dimension of the input tensor (minus batch dimension) |
| out_shape: tuple of integers stating the dimension of the final output tensor (minus batch dimension) |
| channels: tuple of integers stating the output channels of each convolutional layer |
| strides: tuple of integers stating the stride (downscale factor) of each convolutional layer |
| kernel_size: integer or tuple of integers stating size of convolutional kernels |
| num_res_units: integer stating number of convolutions in residual units, 0 means no residual units |
| act: name or type defining activation layers |
| norm: name or type defining normalization layers |
| dropout: optional float value in range [0, 1] stating dropout probability for layers, None for no dropout |
| bias: boolean stating if convolution layers should have a bias component |
| |
| Examples:: |
| |
| # infers a 2-value result (eg. a 2D cartesian coordinate) from a 64x64 image |
| net = Regressor((1, 64, 64), (2,), (2, 4, 8), (2, 2, 2)) |
| |
| """ |
|
|
| def __init__( |
| self, |
| in_shape: Sequence[int], |
| out_shape: Sequence[int], |
| channels: Sequence[int], |
| strides: Sequence[int], |
| kernel_size: Sequence[int] | int = 3, |
| num_res_units: int = 2, |
| act=Act.PRELU, |
| norm=Norm.INSTANCE, |
| dropout: float | None = None, |
| bias: bool = True, |
| ) -> None: |
| super().__init__() |
|
|
| self.in_channels, *self.in_shape = ensure_tuple(in_shape) |
| self.dimensions = len(self.in_shape) |
| self.channels = ensure_tuple(channels) |
| self.strides = ensure_tuple(strides) |
| self.out_shape = ensure_tuple(out_shape) |
| self.kernel_size = ensure_tuple_rep(kernel_size, self.dimensions) |
| self.num_res_units = num_res_units |
| self.act = act |
| self.norm = norm |
| self.dropout = dropout |
| self.bias = bias |
| self.net = nn.Sequential() |
|
|
| echannel = self.in_channels |
|
|
| padding = same_padding(kernel_size) |
|
|
| self.final_size = np.asarray(self.in_shape, dtype=int) |
| self.reshape = Reshape(*self.out_shape) |
|
|
| |
| for i, (c, s) in enumerate(zip(self.channels, self.strides)): |
| layer = self._get_layer(echannel, c, s, i == len(channels) - 1) |
| echannel = c |
| self.net.add_module("layer_%i" % i, layer) |
| self.final_size = calculate_out_shape(self.final_size, kernel_size, s, padding) |
|
|
| self.final = self._get_final_layer((echannel,) + self.final_size) |
|
|
| def _get_layer( |
| self, in_channels: int, out_channels: int, strides: int, is_last: bool |
| ) -> ResidualUnit | Convolution: |
| """ |
| Returns a layer accepting inputs with `in_channels` number of channels and producing outputs of `out_channels` |
| number of channels. The `strides` indicates downsampling factor, ie. convolutional stride. If `is_last` |
| is True this is the final layer and is not expected to include activation and normalization layers. |
| """ |
|
|
| layer: ResidualUnit | Convolution |
|
|
| if self.num_res_units > 0: |
| layer = ResidualUnit( |
| subunits=self.num_res_units, |
| last_conv_only=is_last, |
| spatial_dims=self.dimensions, |
| in_channels=in_channels, |
| out_channels=out_channels, |
| strides=strides, |
| kernel_size=self.kernel_size, |
| act=self.act, |
| norm=self.norm, |
| dropout=self.dropout, |
| bias=self.bias, |
| ) |
| else: |
| layer = Convolution( |
| conv_only=is_last, |
| spatial_dims=self.dimensions, |
| in_channels=in_channels, |
| out_channels=out_channels, |
| strides=strides, |
| kernel_size=self.kernel_size, |
| act=self.act, |
| norm=self.norm, |
| dropout=self.dropout, |
| bias=self.bias, |
| ) |
|
|
| return layer |
|
|
| def _get_final_layer(self, in_shape: Sequence[int]): |
| linear = nn.Linear(int(np.prod(in_shape)), int(np.prod(self.out_shape))) |
| return nn.Sequential(nn.Flatten(), linear) |
|
|
| def forward(self, x: torch.Tensor) -> torch.Tensor: |
| x = self.net(x) |
| x = self.final(x) |
| x = self.reshape(x) |
| return x |
|
|