| [ | |
| { | |
| "check_type": "node attribute", | |
| "graph": { | |
| "accession": "A0A6Q8PGS0_HUMAN", | |
| "id": "A0A6Q8PGS0", | |
| "synonyms": [ | |
| "A0A6Q8PGS0_HUMAN", | |
| "ENSG00000288623" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A6Q8PGS0 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.", | |
| "evidence": "Missing name: 'LOC128071547'.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "node attribute", | |
| "graph": { | |
| "accession": "A0A024RCX6_HUMAN", | |
| "id": "A0A024RCX6", | |
| "synonyms": [ | |
| "A0A024RCX6_HUMAN" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A024RCX6 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.", | |
| "evidence": "Missing name: 'PPT2'.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "node attribute", | |
| "graph": { | |
| "accession": "A0A6Q8PFC9_HUMAN", | |
| "id": "A0A6Q8PFC9", | |
| "synonyms": [ | |
| "A0A6Q8PFC9_HUMAN", | |
| "ENSG00000288634" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A6Q8PFC9 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.", | |
| "evidence": "Missing name: 'LOC128031837'.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "node attribute", | |
| "graph": { | |
| "accession": "A0A6Q8PHS2_HUMAN", | |
| "id": "A0A6Q8PHS2", | |
| "synonyms": [ | |
| "A0A6Q8PHS2_HUMAN", | |
| "ENSG00000288626" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Please check if the 'name' attribute of the node with type Protein and id A0A6Q8PHS2 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.", | |
| "evidence": "Missing name: 'LOC128071544'.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "node attribute", | |
| "graph": { | |
| "id": "B4DSJ7", | |
| "accession": "B4DSJ7_HUMAN", | |
| "synonyms": [ | |
| "B4DSJ7_HUMAN" | |
| ], | |
| "taxid": "9606", | |
| "name": "DNMT3B" | |
| }, | |
| "instruction": "Please check if the 'name' attribute of the node with type Protein and id B4DSJ7 in the knowledge graph is correct. If it's correct, please respond with 'support'; if not, respond with 'refute'.", | |
| "evidence": "The name of the node found in the KG is consistent with the one retrieved from the UniProt database, both being 'DNMT3B'.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existence", | |
| "graph": { | |
| "p": { | |
| "name": "ACKR1", | |
| "id": "Q16570-1", | |
| "accession": "ACKR1_HUMAN", | |
| "taxid": "9606", | |
| "synonyms": [ | |
| "ACKR1_HUMAN", | |
| "ACKR1", | |
| "4NUU", | |
| "4NUV", | |
| "7P93", | |
| "9606.ENSP00000357103", | |
| "CHEMBL2321626", | |
| "ENSG00000213088.12" | |
| ] | |
| } | |
| }, | |
| "instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'Q16570-1' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.", | |
| "evidence": "The protein with ID 'Q16570-1' can be found from UniProtKB. And this node exists in the KG too.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existence", | |
| "graph": { | |
| "name": "C5orf17", | |
| "id": "Q8NAS9", | |
| "accession": "CE017_HUMAN", | |
| "synonyms": [ | |
| "CE017_HUMAN", | |
| "C5orf17" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'Q8NAS9' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.", | |
| "evidence": "The protein with ID 'Q8NAS9' is removed from UniProtKB. And this node no longer exists in the KG either.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existence", | |
| "graph": { | |
| "name": "XKRY2", | |
| "id": "A2RUG3", | |
| "accession": "XKRY2_HUMAN", | |
| "synonyms": [ | |
| "XKRY2_HUMAN", | |
| "XKRY2" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'A2RUG3' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.", | |
| "evidence": "The protein with ID 'A2RUG3' is removed from UniProtKB. And this node no longer exists in the KG either.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existence", | |
| "graph": { | |
| "name": "C3orf86", | |
| "id": "P0DN24", | |
| "accession": "CC086_HUMAN", | |
| "synonyms": [ | |
| "CC086_HUMAN", | |
| "C3orf86" | |
| ], | |
| "taxid": "9606" | |
| }, | |
| "instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'P0DN24' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.", | |
| "evidence": "The protein with ID 'P0DN24' is removed from UniProtKB. And this node no longer exists in the KG either.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existence", | |
| "graph": { | |
| "p": { | |
| "name": "ACSL5", | |
| "id": "Q9ULC5-4", | |
| "accession": "ACSL5_HUMAN", | |
| "taxid": "9606", | |
| "synonyms": [ | |
| "ACSL5_HUMAN", | |
| "ACSL5", | |
| "9606.ENSP00000348429", | |
| "CHEMBL4105818", | |
| "ENSG00000197142.11" | |
| ] | |
| } | |
| }, | |
| "instruction": "Due to certain reasons, some entries were removed from the database. Please check whether the node with the type 'Protein' and the id 'Q9ULC5-4' exists in the knowledge graph, and confirm whether it exists in the corresponding database. If its existence is consistent, please respond with 'support'; otherwise, answer 'refute'.", | |
| "evidence": "The protein with ID 'Q9ULC5-4' can be found from UniProtKB. And this node exists in the KG too.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "P20645", | |
| "type": "Protein" | |
| }, | |
| "relationship": null, | |
| "target node": { | |
| "id": "Q13439", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'P20645' to the node of type 'Protein' with id 'Q13439'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "Interaction exists between P20645 and Q13439, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q9NR63", | |
| "type": "Protein" | |
| }, | |
| "relationship": null, | |
| "target node": { | |
| "id": "Q06278", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'Q06278'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "Interaction exists between Q9NR63 and Q06278, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q9NR63", | |
| "type": "Protein" | |
| }, | |
| "relationship": null, | |
| "target node": { | |
| "id": "P05177", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'P05177'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "Interaction exists between Q9NR63 and P05177, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q9NR63", | |
| "type": "Protein" | |
| }, | |
| "relationship": null, | |
| "target node": { | |
| "id": "P29373", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'P29373'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "Interaction exists between Q9NR63 and P29373, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q9NR63", | |
| "type": "Protein" | |
| }, | |
| "relationship": null, | |
| "target node": { | |
| "id": "Q8NEX9", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9NR63' to the node of type 'Protein' with id 'Q8NEX9'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "Interaction exists between Q9NR63 and Q8NEX9, as recorded in database STRING. However, no relation is found between these two node in the KG, which means it lack some information.", | |
| "label": "refute" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "P19878", | |
| "type": "Protein" | |
| }, | |
| "relationship": "CURATED_INTERACTS_WITH", | |
| "target node": { | |
| "id": "P14598", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'P19878' to the node of type 'Protein' with id 'P14598'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "The relationship is supported by publication with PubMed ID: [12169629].", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "P61024", | |
| "type": "Protein" | |
| }, | |
| "relationship": "CURATED_INTERACTS_WITH", | |
| "target node": { | |
| "id": "P24941", | |
| "type": "Protein" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'P61024' to the node of type 'Protein' with id 'P24941'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "The relationship is supported by publication with PubMed ID: [8601310].", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existing one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q8WYQ9", | |
| "type": "Protein" | |
| }, | |
| "relationship": "ASSOCIATED_WITH", | |
| "target node": { | |
| "id": "GO:1990234", | |
| "type": "Cellular_component" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q8WYQ9' to the node of type 'Cellular_component' with id 'GO:1990234'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "According to the publication (PMID:33730579), there is a relationship between the two nodes, which matches the association between the two nodes in the knowledge graph.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existing one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q9UN42", | |
| "type": "Protein" | |
| }, | |
| "relationship": "ASSOCIATED_WITH", | |
| "target node": { | |
| "id": "GO:0110165", | |
| "type": "Cellular_component" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q9UN42' to the node of type 'Cellular_component' with id 'GO:0110165'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "According to the publication (PMID:32549352), there is a relationship between the two nodes, which matches the association between the two nodes in the knowledge graph.", | |
| "label": "support" | |
| }, | |
| { | |
| "check_type": "existing one-hop", | |
| "graph": { | |
| "source node": { | |
| "id": "Q96MF6", | |
| "type": "Protein" | |
| }, | |
| "relationship": "ASSOCIATED_WITH", | |
| "target node": { | |
| "id": "GO:1990204", | |
| "type": "Cellular_component" | |
| } | |
| }, | |
| "instruction": "Please check the relationship in the knowledge graph from the node of type 'Protein' with id 'Q96MF6' to the node of type 'Cellular_component' with id 'GO:1990204'. If a relationship exists, verify its existence. Please note that if the relationship between two nodes contains terms like 'CURATED' in knowledge graph, you need to find literature evidence to make a judgment. If no relationship exists, confirm that it indeed does not exist. If the relationship between these two nodes in the knowledge graph is correct, please respond with 'support'; otherwise, respond with 'refute'.", | |
| "evidence": "According to the publication (PMID:31540029), there is a relationship between the two nodes, which matches the association between the two nodes in the knowledge graph.", | |
| "label": "support" | |
| } | |
| ] |