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README.md
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---
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license: mit
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---
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license: mit
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language:
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- en
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---
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This dataset provides the predicted three-dimensional structures corresponding to the Tasks Assessing Protein Embeddings (TAPE) benchmark. Specifically, it encompasses the structural data generated for the stability, fluorescence, and protein-protein interaction (PPI) affinity tasks.
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The reference for the TAPE benchmark is:
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```bibtex
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@inproceedings{tape2019,
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author = {Rao, Roshan and Bhattacharya, Nicholas and Thomas, Neil and Duan, Yan and Chen, Xi and Canny, John and Abbeel, Pieter and Song, Yun S},
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title = {Evaluating Protein Transfer Learning with TAPE},
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booktitle = {Advances in Neural Information Processing Systems}
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year = {2019}
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}
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@article{sarkisyan2016,
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title={Local fitness landscape of the green fluorescent protein},
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author={Sarkisyan, Karen S and Bolotin, Dmitry A and Meer, Margarita V and Usmanova, Dinara R and Mishin, Alexander S and Sharonov, George V and Ivankov, Dmitry N and Bozhanova, Nina G and Baranov, Mikhail S and Soylemez, Onuralp and others},
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journal={Nature},
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volume={533},
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number={7603},
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pages={397},
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year={2016},
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publisher={Nature Publishing Group}
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}
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@article{proteinnet,
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title={ProteinNet: a standardized data set for machine learning of protein structure},
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author={AlQuraishi, Mohammed},
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journal={arXiv preprint arXiv:1902.00249},
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year={2019}
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}
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@article{rocklin2017,
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title={Global analysis of protein folding using massively parallel design, synthesis, and testing},
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author={Rocklin, Gabriel J and Chidyausiku, Tamuka M and Goreshnik, Inna and Ford, Alex and Houliston, Scott and Lemak, Alexander and Carter, Lauren and Ravichandran, Rashmi and Mulligan, Vikram K and Chevalier, Aaron and others},
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journal={Science},
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volume={357},
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number={6347},
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pages={168--175},
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year={2017},
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publisher={American Association for the Advancement of Science}
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}
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```
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