AmelieSchreiber
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Update README.md
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README.md
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license: mit
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---
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This dataset is obtained from a [UniProt search](https://www.uniprot.org/uniprotkb?facets=proteins_with%3A9%2Cannotation_score%3A4&fields=accession%2Cprotein_families%2Cft_binding%2Cft_act_site%2Csequence%2Ccc_similarity&query=%28ft_binding%3A*%29+AND+%28family%3A*%29&view=table)
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reviewed sequences. We refined the dataset by only including sequences with an annotation score of 4. We sorted and split by family, where
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random families were selected for the test dataset until approximately 20% of the protein sequences were separated out for test data.
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We excluded any sequences with `<`, `>`, or `?` in the binding site annotations. We furthermore included any active sites that were not
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listed as binding sites in the labels. We split any sequence longer than 1000 residues
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less after the train test split.
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---
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license: mit
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language:
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- en
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tags:
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- biology
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- protein sequences
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- binding sites
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- active sites
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size_categories:
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- 100K<n<1M
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---
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This dataset is obtained from a [UniProt search](https://www.uniprot.org/uniprotkb?facets=proteins_with%3A9%2Cannotation_score%3A4&fields=accession%2Cprotein_families%2Cft_binding%2Cft_act_site%2Csequence%2Ccc_similarity&query=%28ft_binding%3A*%29+AND+%28family%3A*%29&view=table)
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reviewed sequences. We refined the dataset by only including sequences with an annotation score of 4. We sorted and split by family, where
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random families were selected for the test dataset until approximately 20% of the protein sequences were separated out for test data.
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We excluded any sequences with `<`, `>`, or `?` in the binding site annotations. We furthermore included any active sites that were not
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listed as binding sites in the labels (seen in the merged "Binding-Active Sites" column). We split any sequence longer than 1000 residues
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into non-overlapping sections of 1000 amino acids or less after the train test split. This results in subsequences of the original protein
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sequence that may be too short for consideration, and filtration of the dataset to exclude such subsequences or segment the longer sequences
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in a more intelligent way may improve performance.
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