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Skull of capybara (Hydrochoerus hydrochaeris) - morphometric parameters
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Background: The capybara (Hydrochoerus hydrochaeris) is the largest rodent in the world. They are territorial animals,and live in social groups, commonly occurring in anthropized area, what has attracted the attention of researchers in relation to this animal species, since it is the host of the Amblyomma cajennese tick that transmits spotted-fever to humansand are responsible for severe impact on livestock and public health. The skull is a part of the axial skeleton that enclosingthe brain, sensory organs and digestive and respiratory structures. Moreover, the phenotypic appearance of the capybarahead depends on the shape of the skull. Thus, the aim of this study was to describe the reference values of cranial measurements of capybaras. The knowledge of morphometric parameters of skull is pivotal for veterinary treatment of pathologicalconditions and taxonomic affiliation.Materials, Methods & Results: Eight capybaras (Hydrochoerus hydrochaeris) skulls were used in this study, irrespectiveof age and sex. The skulls belonging to the anatomical collection of the Laboratory of Wildlife Anatomy and AnatomicalMuseum, Department of Anatomy, Universidade Estadual Paulista Júlio de Mesquita Filho, UNESP, Botucatu, São Paulo.A total of 35 morphometric parameters were performed using a digital caliper and 6 cranial indices were calculated. Allinvestigated features were expressed as mean ± standard deviation. Anatomically, capybara skull were elongated, rectanglelike and consisted of cranial and facial bones. The morphometric parameters were used to calculate the following craniometrics indices: skull index (57.86 ± 3.62), cranial index (50.49 ± 2.08), facial index (49.22 ± 3.82), basal index (33.98 ±0.86), nasal index (26.73 ± 3.1), and the foramen magnum index (149.61 ± 1.07). Moreover, the facial part length (mean137.90 mm) and cranium part length (mean 87.76 mm) also were calculated. The facial part...(AU)
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Nationwide Assessment of Water Quality in Rivers across Lebanon by Quantifying Fecal Indicators Densities and Profiling Antibiotic Resistance of Escherichia coli
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The use of contaminated water has been associated with severe disease outbreaks. Due to widespread pollution with untreated sewage, concerns have been raised over water quality in Lebanon, a country with well-documented challenges in infrastructure. Here, we evaluated the water quality of major rivers in Lebanon by quantifying the densities of fecal indicator bacteria (fecal coliforms and Escherichia coli). Additionally, we assessed the dissemination of antibiotic-resistant E. coli in river water. Composite water samples (n = 132) were collected from fourteen rivers, and 378 E. coli were isolated and analyzed. Fecal coliforms and E. coli were detected in 96.29% and 95.5% of the samples, respectively. Additionally, 73.48–61.3% and 31.81% of the samples exceeded the microbiological acceptability standards for irrigation and the fecal coliform limit for recreational activities, respectively. The E. coli exhibited resistance to ampicillin (40% of isolates), amoxicillin + clavulanic acid (42%), cefepime (4%), cefotaxime (14%), cefalexin (46%), cefixime (17%), doripenem (0.3%), imipenem (0.5%), gentamicin (6%), kanamycin (9%), streptomycin (35%), tetracycline (35%), ciprofloxacin (10%), norfloxacin (7%), trimethoprim-sulfamethoxazole (32%), and chloramphenicol (13%). Notably, 45.8% of the isolates were classified as multidrug resistant (MDR). Our results highlight the need to urgently address fecal pollution and the dissemination of antibiotic resistance in Lebanese rivers.
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Artificial Light at Night Drives Earlier Singing in a Neotropical Bird
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Anthropogenic noise and artificial light at night (ALAN) can disrupt the morning singing routines of urban birds, however, its influence on tropical species remains poorly explored. Here, I assessed the association between light and noise pollution with the dawn chorus onset of the Saffron Finch (Sicalis flaveola) in a city in Colombia. I studied 32 sites comprised of different conditions of urban development based on built cover. I recorded the time of the first song of the Saffron Finch, the conspecific density and measured anthropogenic noise and ALAN using smartphone apps. The findings of this study show that Saffron Finches living in highly developed sites sang earlier at dawn than those occupying less urbanized sites. Unexpectedly, this timing difference was related to ALAN instead of anthropogenic noise, suggesting that light pollution could drive earlier dawn chorus in a tropical urban bird. Saffron Finches could take advantage of earlier singing for signaling territorial ownership among neighbors. Future studies need to assess the influence of ALAN on the dawn chorus timing of Neotropical urban birds.
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Application of Arbuscular Mycorrhizal Fungi in Vineyards: Water and Biotic Stress Under a Climate Change Scenario: New Challenge for Chilean Grapevine Crop
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The crop Vitis vinifera (L.) is of great economic importance as Chile is one of the main wine-producing countries, reaching a vineyard area of 145,000 ha. This vine crop is usually very sensitive to local condition changes and agronomic practices; therefore, strategies to counteract the expected future decrease in water level for agricultural irrigation, temperature increase, extreme water stress (abiotic stress), as well as increase in pathogenic diseases (biotic stress) related to climate change will be of vital importance for this crop. Studies carried out in recent years have suggested that arbuscular mycorrhizal fungi (AMF) can provide key ecosystem services to host plants, such as water uptake implementation and enhanced absorption of nutrients such as P and N, which are key factors for improving the nutritional status of the vine. AMF use in viticulture will contribute also to sustainable agronomic management and bioprotection against pathogens. Here we will present (1) the current status of grapevines in Chile, (2) the main problems in grapevines related to water stress and associated with climate change, (3) the importance of AMF to face water stress and pathogens, and (4) the application of AMF as a biotechnological and sustainable tool in vineyards.
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Bats and Academics: How Do Scientists Perceive Their Object of Study?
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Bats are associated with conflicting perceptions among humans, ranging from affection to disgust. If these attitudes can be associated with various factors among the general public (e.g. social norms, lack of knowledge), it is also important to understand the attitude of scientists who study bats. Such reflexive information on the researchers community itself could indeed help designing adequate mixed communication tools aimed at protecting bats and their ecosystems, as well as humans living in their vicinity that could be exposed to their pathogens. Thus, we conducted an online survey targeting researchers who spend a part of their research activity studying bats. Our aim was to determine (1) how they perceive their object of study, (2) how they perceive the representation of bats in the media and by the general population, (3) how they protect themselves against pathogen infections during their research practices, and (4) their perceptions of the causes underlying the decline in bat populations worldwide. From the 587 completed responses (response rate of 28%) having a worldwide distribution, the heterogeneity of the scientists’ perception of their own object of study was highlighted. In the majority of cases, this depended on the type of research they conducted (i.e. laboratory versus field studies) as well as their research speciality. Our study revealed a high level of personal protection equipment being utilised against pathogens during scientific practices, although the role bats play as reservoirs for a number of emerging pathogens remains poorly known. Our results also disclosed the unanimity among specialists in attributing a direct role for humans in the global decline of bat populations, mainly via environmental change, deforestation, and agriculture intensification. Overall, the present study suggests the need for better communication regarding bats and their biology, their role within the scientific community, as well as in the general public population. As a consequence, increased knowledge regarding scientists’ perceptions of bats should improve the role scientists play in influencing the perception of bats by the general public.
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Characterization of a New Insecticidal Anthraquinone Derivative from an Endophyte of Acremonium vitellinum against Helicoverpa armigera.
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Endophytic fungi have proven to be prolific producers of bioactive secondary metabolites with agricultural applications. In this study, bioassay-guided isolation of the endophytic fungus Acremonium vitellinum yielded four anthraquinone derivatives (compounds 1-4), including a previously undescribed dimethylated derivative of bipolarin, 6,8-di-O-methylbipolarin (1). Their structures were determined by 1D and 2D nuclear magnetic resonance analysis as well as high-resolution electrospray ionization mass spectrometry data, and the absolute configuration of 1 was established by comparing the calculated and experimental electronic circular dichroism spectra. The insecticidal activity of the isolated compounds against the cotton bollworm Helicoverpa armigera was evaluated. The new compound 1 showed the strongest larvicidal activity against the 3rd instar larvae of H. armigera with an LC50 value of 0.72 mg/mL. In addition, transcriptome sequencing was performed to evaluate the molecular mechanism of the insecticidal activity. In total, 5732 differentially expressed genes were found, among which 2904 downregulated genes and 2828 upregulated genes were mainly involved in cell autophagy, apoptosis, and DNA mismatch repair and replication. The results presented in this study reveal how 1 exerts its insecticidal effects against H. armigera via genome-wide differential gene expression analyses. Our findings suggest that anthraquinone derivatives are potential biopesticides for cotton bollworm control.
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The Role of Plant Growth Promoting Rhizosphere Microbiome as Alternative Biofertilizer in Boosting Solanum melongena L. Adaptation to Salinity Stress.
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Recent ecological perturbations are presumed to be minimized by the application of biofertilizers as a safe alternative to chemical fertilizers. The current study aims to use bioinoculum (I) as an alternative biofertilizer and to alleviate salinity stress in the cultivar Solanum melongena L. Baldi. The salinity drench was 200 mM NaCl (S), which was used with different treatments (0; I; S; S + I) in pots prefilled with clay and sand (1:2). Results showed that salinity stress inhibited both plant fresh and dry weights, water content, and photosynthetic pigments. The content of root spermine (Spm), spermidine (Spd), and puterscine (Put) decreased. However, addition of the bioinoculum to salt-treated plants increased pigment content (80.35, 39.25, and 82.44% for chl a, chl b, and carotenoids, respectively). Similarly, K+, K+/Na+, Ca2+, P, and N contents were significantly enhanced. Increases were recorded for Spm + Spd and Put in root and shoot (8.4-F, 1.6-F and 2.04-F, 2.13-F, respectively). RAPD PCR showed gene expression upregulation of photosystem II D2 protein, glutathione reductase, glutathione-S-transferase, protease I, and protease II. The current work recommends application of the selected bioinoculum as a green biofertilizer and biopesticide. Additionally, the studied eggplant cultivar can be regarded as a source of salt tolerance genes in agricultural fields.
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Ecology, evolution, and epidemiology of zoonotic and vector-borne infectious diseases in French Guiana: Transdisciplinarity does matter to tackle new emerging threats.
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French Guiana is a European ultraperipheric region located on the northern Atlantic coast of South America. It constitutes an important forested region for biological conservation in the Neotropics. Although very sparsely populated, with its inhabitants mainly concentrated on the Atlantic coastal strip and along the two main rivers, it is marked by the presence and development of old and new epidemic disease outbreaks, both research and health priorities. In this review paper, we synthetize 15 years of multidisciplinary and integrative research at the interface between wildlife, ecosystem modification, human activities and sociodemographic development, and human health. This study reveals a complex epidemiological landscape marked by important transitional changes, facilitated by increased interconnections between wildlife, land-use change and human occupation and activity, human and trade transportation, demography with substantial immigration, and identified vector and parasite pharmacological resistance. Among other French Guianese characteristics, we demonstrate herein the existence of more complex multi-host disease life cycles than previously described for several disease systems in Central and South America, which clearly indicates that today the greater promiscuity between wildlife and humans due to demographic and economic pressures may offer novel settings for microbes and their hosts to circulate and spread. French Guiana is a microcosm that crystallizes all the current global environmental, demographic and socioeconomic change conditions, which may favor the development of ancient and future infectious diseases.
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Occurrence of mesocarnivores in montane sky islands: How spatial and temporal overlap informs rabies management in a regional hotspot
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Interspecific interactions among mesocarnivores can influence community dynamics and resource partitioning. Insights into these interactions can enhance understanding of local ecological processes that have impacts on pathogen transmission, such as the rabies lyssavirus. Host species ecology can provide an important baseline for disease management strategies especially in biologically diverse ecosystems and heterogeneous landscapes. We used a mesocarnivore guild native to the southwestern United States, a regional rabies hotspot, that are prone to rabies outbreaks as our study system. Gray foxes (Urocyon cinereoargenteus), striped skunks (Mephitis mephitis), bobcats (Lynx rufus), and coyotes (Canis latrans) share large portions of their geographic ranges and can compete for resources, occupy similar niches, and influence population dynamics of each other. We deployed 80 cameras across two mountain ranges in Arizona, stratified by vegetation type. We used two-stage modeling to gain insight into species occurrence and co-occurrence patterns. There was strong evidence for the effects of elevation, season, and temperature impacting detection probability of all four species, with understory height and canopy cover also influencing gray foxes and skunks. For all four mesocarnivores, a second stage multi-species co-occurrence model better explained patterns of detection than the single-species occurrence model. These four species are influencing the space use of each other and are likely competing for resources seasonally. We did not observe spatial partitioning between these competitors, likely due to an abundance of cover and food resources in the biologically diverse system we studied. From our results we can draw inferences on community dynamics to inform rabies management in a regional hotspot. Understanding environmental factors in disease hotspots can provide useful information to develop more reliable early-warning systems for viral outbreaks. We recommend that disease management focus on delivering oral vaccine baits onto the landscape when natural food resources are less abundant, specifically during the two drier seasons in Arizona (pre-monsoon spring and autumn) to maximize intake by all mesocarnivores.
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Mitigation of emerging implications of climate change on food production systems
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Abstract Crops, livestock and seafood are major contributors to global economy. Agriculture and fisheries are especially dependent on climate. Thus, elevated temperatures and carbon dioxide levels can have large impacts on appropriate nutrient levels, soil moisture, water availability and various other critical performance conditions. Changes in drought and flood frequency and severity can pose severe challenges to farmers and threaten food safety. In addition, increasingly warmer water temperatures are likely to shift the habitat ranges of many fish and shellfish species, ultimately disrupting ecosystems. In general, climate change will probably have negative implications for farming, animal husbandry and fishing. The effects of climate change must be taken into account as a key aspect along with other evolving factors with a potential impact on agricultural production, such as changes in agricultural practices and technology; all of them with a serious impact on food availability and price. This review is intended to provide critical and timely information on climate change and its implications in the food production/consumption system, paying special attention to the available mitigation strategies.
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Gonads or body? Differences in gonadal and somatic photoperiodic growth response in two vole species
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To optimally time reproduction, seasonal mammals use a photoperiodic neuroendocrine system (PNES) that measures photoperiod and subsequently drives reproduction. To adapt to late spring arrival at northern latitudes, a lower photoperiodic sensitivity and therefore a higher critical photoperiod for reproductive onset is necessary in northern species to arrest reproductive development until spring onset. Temperature-photoperiod relationships, and hence food availability-photoperiod relationships, are highly latitude dependent. Therefore, we predict PNES sensitivity characteristics to be latitude-dependent. Here, we investigated photoperiodic responses at different times during development in northern (tundra/root vole, Microtus oeconomus) and southern vole species (common vole, Microtus arvalis) exposed to constant short (SP) or long photoperiod (LP). Although, the tundra vole grows faster under LP, no photoperiodic effect on somatic growth is observed in the common vole. Contrastingly, gonadal growth is more sensitive to photoperiod in the common vole, suggesting that photoperiodic responses in somatic and gonadal growth can be plastic, and might be regulated through different mechanisms. In both species, thyroid-stimulating-hormone-ß subunit (Tshß) and iodothyronine- deiodinase 2 (Dio2) expression is highly increased under LP, whereas Tshr and Dio3 decreases under LP. High Tshr levels in voles raised under SP may lead to increased sensitivity to increasing photoperiods later in life. The higher photoperiodic induced Tshr response in tundra voles suggests that the northern vole species might be more sensitive to TSH when raised under SP. In conclusion, species differences in developmental programming of the PNES, which is dependent on photoperiod early in development, may form different breeding strategies evolving as part of latitudinal adaptation.
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Social Experience of Captive Livingstone’s Fruit Bats (Pteropus livingstonii)
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SIMPLE SUMMARY: The maintenance and stability of social experience is an especially important element of the captive welfare of zoo-housed species. The population of critically endangered Livingstone’s fruit bats (Pteropus livingstonii) resident at Jersey Zoo display a complex social structure of affiliative and aggressive interactions. Subgroups defined by individual characteristics contribute in different ways to this structure. Social information, illuminated through the use of social network analysis techniques, could be used in the future to promote social stability and safeguard individual welfare when making evidence-based husbandry decisions. ABSTRACT: Social network analysis has been highlighted as a powerful tool to enhance the evidence-based management of captive-housed species through its ability to quantify the social experience of individuals. We apply this technique to explore the social structure and social roles of 50 Livingstone’s fruit bats (Pteropus livingstonii) housed at Jersey Zoo, Channel Islands, through the observation of associative, affiliative, and aggressive interactions over two data collection periods. We implement binomial mixture modelling and characteristic-based assortment quantification to describe the complexity and organisation of social networks, as well as a multiple regression quadratic assignment procedural (MRQAP) test to analyse the relationship between network types. We examine the effects of individual characteristics (i.e., sex, age, and dominance rank) on social role by fitting models to explain the magnitude of node metrics. Additionally, we utilize a quadratic assignment procedural (QAP) test to assess the temporal stability of social roles over two seasons. Our results indicate that P. livingstonii display a non-random network structure. Observed social networks are positively assorted by age, as well as dominance rank. The frequency of association between individuals correlates with a higher frequency of behavioural interactions, both affiliative and aggressive. Individual social roles remain consistent over ten months. We recommend that, to improve welfare and captive breeding success, relationships between individuals of similar ages and dominance levels should be allowed to persist in this group where possible, and separating individuals that interact frequently in an affiliative context should be avoided.
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An arachnid’s guide to be an ant: morphological and behavioural mimicry in ant-mimicking spiders
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Batesian mimicry imposes several challenges to mimics and evokes adaptations in multiple sensory modalities. Myrmecomorphy, morphological and behavioral resemblance to ants, is seen in over 2000 arthropod species. Ant-like resemblance is observed in at least 13 spider families despite spiders having a distinct body plan compared to ants. Quantifying the extent to which spiders’ shape, size, and behavior resemble model ants will allow us to comprehend the evolutionary pressures that have facilitated myrmecomorphy. Myrmaplata plataleoides are ‘accurate’ mimics of the weaver ants, Oecophylla smaragdina. In this study, we quantify the speed of movement of model, mimic, and non-mimetic jumping spiders. We use traditional and geometric morphometrics to quantify traits such as foreleg and hindleg size, body shape between the model ant, mimic, and non-mimics. Our results suggest that while the mimics closely resemble the model ants in speed of movement, they occupy an intermediate morphological space compared to the model ants and non-mimics. We suggest that ant-mimicking spiders are better at mimicking ants’ locomotory movement than morphology and overall body shape. Our study provides a framework to understand the multimodal nature of mimicry and helps discern the relative contributions of such traits that drive mimetic accuracy in ant-mimicking spiders.
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Evaluation of environmental and physiological indicators in lactating dairy cows exposed to heat stress.
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This study aimed to better understand environmental heat stress and physiological heat strain indicators in lactating dairy cows. Sixteen heat stress indicators were derived using microenvironmental parameters that were measured at the surrounding of cows and at usual fixed locations in the barn by using handheld and fixed subarea sensors, respectively. Twenty high-producing Holstein-Friesian dairy cows (> 30.0 kg/day) from an intensive dairy farm were chosen to measure respiration rate (RR), vaginal temperature (VT), and body surface temperature of forehead (FT), eye (ET), and muzzle (MT). Our results show that microenvironments measured by the handheld sensor were slightly warmer and drier than those measured by the fixed subarea sensor; however, their derived heat stress indicators correlated equally well with physiological indicators. Interestingly, ambient temperature (Ta) had the highest correlations with physiological indicators and the best classification performance in recognizing actual heat strain state. Using segmented mixed models, the determined Ta thresholds for maximum FT, mean FT, RR, maximum ET, mean ET, VT, mean MT, and maximum MT were 24.1 °C, 24.2 °C, 24.4 °C, 24.6 °C, 24.6 °C, 25.3 °C, 25.4 °C, and 25.4 °C, respectively. Thus, we concluded that the fixed subarea sensor is a reliable tool for measuring cows' microenvironments; Ta is an appropriate heat stress indicator; FT, RR, and ET are good early heat strain indicators. The results of this study could be helpful for dairy practitioners in a similar intensive setting to detect and respond to heat strain with more appropriate indicators.
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Benefits and Risks of Smallholder Livestock Production on Child Nutrition in Low- and Middle-Income Countries.
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Livestock production may improve nutritional outcomes of pregnant women and children by increasing household income, availability of nutrient-dense foods, and women's empowerment. Nevertheless, the relationship is complex, and the nutritional status of children may be impaired by presence of or proximity to livestock and their pathogens. In this paper, we review the benefits and risks of livestock production on child nutrition. Evidence supports the nutritional benefits of livestock farming through income, production, and women's empowerment. Increasing animal source food consumption requires a combination of efforts, including improved animal management so that herd size is adequate to meet household income needs and consumption and addressing sociocultural and gendered norms. Evidence supports the inclusion of behavior change communication strategies into livestock production interventions to facilitate the sustainability of nutritional benefits over time, particularly interventions that engage women and foster dimensions of women's empowerment. In evaluating the risks of livestock production, evidence indicates that a broad range of enteric pathogens may chronically infect the intestines of children and, in combination with dietary deficits, may cause environmental enteric dysfunction (EED), a chronic inflammation of the gut. Some of the most important pathogens associated with EED are zoonotic in nature with livestock as their main reservoir. Very few studies have aimed to understand which livestock species contribute most to colonization with these pathogens, or how to reduce transmission. Control at the point of exposure has been investigated in a few studies, but much less effort has been spent on improving animal husbandry practices, which may have additional benefits. There is an urgent need for dedicated and long-term research to understand which livestock species contribute most to exposure of young children to zoonotic enteric pathogens, to test the potential of a wide range of intervention methods, to assess their effectiveness in randomized trials, and to assure their broad adaptation and sustainability. This review highlights the benefits and risks of livestock production on child nutrition. In addition to identifying research gaps, findings support inclusion of poor gut health as an immediate determinant of child undernutrition, expanding the established UNICEF framework which includes only inadequate diet and disease.
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The In Vitro and In Planta Interspecies Interactions Among Rice-Pathogenic Burkholderia Species.
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Burkholderia glumae, B. plantarii, and B. gladioli are responsible for serious diseases in rice crops and co-occurrence among them has been reported. In this study, in vitro assays revealed antagonistic activity among these organisms, with B. gladioli demonstrating strong inhibition of B. glumae and B. plantarii. Strains of B. glumae and B. plantarii that express green fluorescent protein were constructed and used for cocultivation assays with B. gladioli, which confirmed the strong inhibitory activity of B. gladioli. Cell-free supernatants from each species were tested against cultures of counterpart species to evaluate the potential to inhibit bacterial growth. To investigate the inhibitory activity of B. gladioli on B. glumae and B. plantarii in rice, rice plant assays were performed and quantitative PCR (qPCR) assays were developed for in planta bacterial quantification. The results indicated that coinoculation with B. gladioli leads to significantly reduced disease severity and colonization of rice tissues compared with single inoculation with B. glumae or B. plantarii. This study demonstrates the interactions among three rice-pathogenic Burkholderia species and strong antagonistic activity of B. gladioli in vitro and in planta. The qPCR assays developed here could be applied for accurate quantification of these organisms from in planta samples in future studies.
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Concentration addition and independent action assessments of the binary mixtures of four toxicants on zebra mussel (Dreissena polymorpha) mortality
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Researchers most often focus on individual toxicants when identifying effective chemical control agents for aquatic invasive species; however, toxicant mixtures may elicit synergistic effects. Synergistic effects may decrease required concentrations and shorten exposure durations for treatments. We investigated four toxicants (EarthTec QZ, Clam-Trol CT-2, niclosamide, and potassium chloride) that have been considered to control invasive zebra mussels (Dreissena polymorpha Pallas, 1771). We determined the toxicity of binary mixtures for five different mixture ratios to adult mussels. We compared our observations to predictions made with concentration addition and independent action paradigms, as based on the dose-response relationships of each individual toxicant. We calculated the model deviation ratio for each combination at the LC50 and LC90 and identified three possible interactions: synergy, antagonism, and additivity. We found that mixtures of niclosamide and Clam-Trol CT-2 were the most synergistic while mixtures that included potassium chloride were largely additive to antagonistic. The use of synergistic combinations has potential to decrease the overall volume and concentration of individual toxicants required for dreissenid mussel treatments, thereby decreasing cost.
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Intentional Diagram Design: Using Gestalt Perceptual Grouping in Cladograms to Tackle Misconceptions
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People have many incorrect beliefs about evolutionary relationships among living things, in part due to the prominence people place on observable similarities as an indicator of such. Consider two examples: (a) a highly detrimental misconception surrounding the current pandemic—that COVID-19 is like the common flu—is based on the similarity of the visible symptoms;(b) people think mushrooms are more closely related to plants than to animals because mushrooms and plants both grow in the ground. Our research asked whether it is possible to combat misconceptions using compelling visual representations. Previous research found that the Gestalt principles of perceptual grouping affect reasoning with evolutionary trees. We explored the potential of designing such trees as a “myth buster” tool to target biological misconceptions. More specifically, we tested the hypothesis that students would judge misconception-based inferences to be weaker when the perceptual grouping of the branches looked less consistent, as opposed to more consistent, with the misconception. The results showed that our manipulation of perceptual grouping affected students’ propensity to make inferences consistent with their misconceptions, in the direction predicted, for six separate misconceptions. © 2021, Springer Nature Switzerland AG.
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A Critical Appraisal of the Evidence Supporting Consumer Motivations for Alternative Proteins
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Alternative proteins are receiving increased global attention. This burgeoning interest in plants (especially plant-based meat alternatives), insects, algae, and cultured meat has been attributed to their reported health benefits, lower environmental impact and improved animal welfare compared to conventional animal-based meat. Food producers and the media are promoting acceptance of these products, claiming superior nutritional, environmental and ethical credentials and a desirable novel sensory experience. However, the evidence supporting these claims remains unclear. In this review, we summarise the main evidence underlying the nutritional, sensorial, economical, ethical, and environmental reasons reported for the rise in consumer demand for alternative proteins. We found many of these reasons to lack a strong evidence base. For instance, evidence is emerging for the nutritional benefits of plant-based meat alternatives, but present claims are largely based on established evidence for plant-based diets. Significant research gaps remain, especially longitudinal evidence on the sustained effects of replacing conventional animal-based proteins with alternative sources. For many alternative proteins, challenges exist in achieving desirable sensory properties akin to animal-based meat to promote their acceptance by consumers. Overall, fundamental shifts in the food system are required to create a culture in which healthful and sustainable food choices are the norm.
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Dormancy of alpine and subalpine perennial forbs
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Depth of dormancy of alpine and subalpine perennial forbs in autumn was investigated, which was judged by the number of days required for growth initiation at 24 °C. The depth of dormancy differed depending on Raunkiaer's life‐form and shoot habits. Chamaephytes with perennial shoot‐axes showed shallower dormancy than hemicryptophytes with annual shoot‐axes, and geophytes with annual shoot‐axes showed the deepest dormancy. The results strongly suggest that the dormancy is more endogenously controlled in forbs less hardy to freezing stress. Potential growth ability of alpine herbaceous chamaephytes in autumn is an adaptive advantage, since they utilize the short vegetative period as long as possible. All of the species with annual shoot‐axes had winter buds covered with scales. In plants with perennial shoot‐axes, percentage of winter buds covered with scales increased with increasing depth of dormancy. The results indicate that the shoot apices are well protected by bud scales in forbs with a long endogeneous‐dormant period.
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Comparing sterile male releases and other methods for integrated control of the tiger mosquito in temperate and tropical climates
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The expansion of mosquito species worldwide is creating a powerful network for the spread of arboviruses. In addition to the destruction of breeding sites (prevention) and mass trapping, methods based on the sterile insect technique (SIT), the autodissemination of pyriproxyfen (ADT), and a fusion of elements from both of these known as boosted SIT (BSIT), are being developed to meet the urgent need for effective vector control. However, the comparative potential of these methods has yet to be explored in different environments. This is needed to propose and integrate informed guidelines into sustainable mosquito management plans. We extended a weather-dependent model of Aedes albopictus population dynamics to assess the effectiveness of these different vector control methods, alone or in combination, in a tropical (Reunion island, southwest Indian Ocean) and a temperate (Montpellier area, southern France) climate. Our results confirm the potential efficiency of SIT in temperate climates when performed early in the year (mid-March for northern hemisphere). In such a climate, the timing of the vector control action was the key factor in its success. In tropical climates, the potential of the combination of methods becomes more relevant. BSIT and the combination of ADT with SIT were twice as effective compared to the use of SIT alone.
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Recent Trends of Animal Research in Northeast India
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Northeast India supports almost all types of vegetation from cultivated plains to grasslands, meadows, marshes, swamps, scrub-forests, tropical forests, temperate forests and alpine vegetation [ ]the North-east regions of India, blessed with rich flora and faunal diversity and abundance, are included in two world-renowned biodiversity hot-spots, viz , the Himalayan biodiversity hotspot and Indo-Myanmar biodiversity hotspot, separated by the Brahmaputra river The establishment of Universities and research institutions in the region by the Government of India and private sectors has elevated the research from fundamental to advance molecular level [ ]animal research in Northeast India is rapidly growing by employing sophisticated equipment and information technology [ ]along with these, more and more anthropogenic pressure in the region has resulted in loss of some precious animal species and dwindling of their population [ ]gathering of animal science researchers in the region was convened not only for sharing and interaction among scientists, but also to motivate young research scholars, and for sustainable utilization and conservation of rich animal diversity in North-east India
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Degradation of the Organochlorinated Herbicide Diuron by Rainforest Basidiomycetes.
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The main organochlorinated compounds used on agricultural crops are often recalcitrant, affecting nontarget organisms and contaminating rivers or groundwater. Diuron (N-(3,4-dichlorophenyl)-N',N'-dimethylurea) is a chlorinated herbicide widely used in sugarcane plantations. Here, we evaluated the ability of 13 basidiomycete strains of growing in a contaminated culture medium and degrading the xenobiotic. Dissipation rates in culture medium with initial 25 mg/L of diuron ranged from 7.3 to 96.8%, being Pluteus cubensis SXS 320 the most efficient strain, leaving no detectable residues after diuron metabolism. Pycnoporus sanguineus MCA 16 removed 56% of diuron after 40 days of cultivation, producing three metabolites more polar than parental herbicide, two of them identified as being DCPU and DCPMU. Despite of the strong inductive effect of diuron upon laccase synthesis and secretion, the application of crude enzymatic extracts of P. sanguineus did not catalyzed the breakdown of the herbicide in vitro, indicating that diuron biodegradation was not related to this oxidative enzyme.
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Intertidal Zone Effects on Occurrence, Fate and Potential Risks of Microplastics with Perspectives under COVID-19 Pandemic
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Micro-(nano-)plastics have become emerging contaminants worldwide in recent years. However, there has not been a critical review on their fate and potential risk in intertidal zones with different geological conditions. Thus, this review provides a comprehensive analysis of the roles of intertidal zones in accumulation or transportation of microplastics, involving convergence, migration, plastiglomerate, and ingestion effects. It is found that microplastics (MPs) are likely to be stranded in mudflats but be transported across the sandy beaches according to their intrinsic and external conditions. Meanwhile, MPs could also form the contamination of plastiglomerate and act as vectors for contaminants, even pathogens, in rocky and biological beaches. Thus, MPs together with nanoplastics (NPs) could potentially threaten the ecosystems of the intertidal zone by their ingestion and translocation. In view of the upsurge of personal protective equipment (PPE) during COVID-19, the occurrence of discarded PPE in the intertidal zones has also been summarized and discussed. Despite that the amount of discarded PPE is relatively smaller than other MPs, the pollution caused by these wastes could increase the possibility for pathogen-attached MPs becoming the source for spreading disease among wildlife and humans. It will be of vital importance for understanding the roles of intertidal zone in influencing the fate and ecotoxicity of the MPs. Moreover, the in-depth discussion on fate of the PPE in each kinds of intertidal zones can be conducive to drawing more attentions on plastic concerns in COVID-19 pandemic and achieving environmental sustainability.
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Deep Metabolic Profiling Assessment of Tissue Extraction Protocols for Three Model Organisms
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Metabolic profiling harbors the potential to better understand various disease entities such as cancer, diabetes, Alzheimer’s, Parkinson’s disease or COVID-19. To better understand such diseases and their intricate metabolic pathways in human studies, model animals are regularly used. There, standardized rearing conditions and uniform sampling strategies are prerequisites towards a successful metabolomic study that can be achieved through model organisms. Although metabolomic approaches have been employed on model organisms before, no systematic assessment of different conditions to optimize metabolite extraction across several organisms and sample types has been conducted. We address this issue using a highly standardized metabolic profiling assay analyzing 630 metabolites across three commonly used model organisms (Drosophila, mouse, and zebrafish) to find an optimal extraction protocol for various matrices. Focusing on parameters such as metabolite coverage, concentration and variance between replicates we compared seven extraction protocols. We found that the application of a combination of 75% ethanol and methyl tertiary-butyl ether (MTBE), while not producing the broadest coverage and highest concentrations, was the most reproducible extraction protocol. We were able to determine up to 530 metabolites in mouse kidney samples, 509 in mouse liver, 422 in zebrafish and 388 in Drosophila and discovered a core overlap of 261 metabolites in these four matrices. To enable other scientists to search for the most suitable extraction protocol in their experimental context and interact with this comprehensive data, we have integrated our data set in the open-source shiny app “MetaboExtract”. Hereby, scientists can search for metabolites or compound classes of interest, compare them across the different tested extraction protocols and sample types as well as find reference concentration values.
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The splitting of bamboo in response to changes in humidity and temperature.
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Bamboo culms are extensively used for structural and decorative purposes. Under certain atmospheric conditions culms can split longitudinally with detrimental effects on their appearance and structural integrity. Here we describe the first ever systematic study of this phenomenon. We tested culms of Moso bamboo (Phyllostachys Pubescens), which had been commercially dried to a moisture content of 12.5%. Using a purpose-built environmental chamber, we measured the rate of splitting for ten different test conditions, varying temperature and humidity and testing samples with and without nodes. A 50% probability of splitting after one week was found to be associated with a reduction in moisture content to 8%. We found that splitting was mainly determined by a change in relative humidity, as opposed to absolute humidity. We hypothesised that splitting occurs owing to an incompatibility in shrinkage in the tangential direction during drying, creating tensile residual stress near the outer surface of the culm. Using data from the published literature we developed a simple theoretical model capable of predicting splitting. Higher residual stress was predicted near nodes, which was consistent with our finding that splitting rarely occurs in samples having no nodes. These findings will be useful in the prevention of splitting, through control of the environment or other protective measures.
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Biogeochemical cycling, tolerance mechanism and phytoremediation strategies of boron in plants: A critical review
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Boron (B) is an inimitable plant micronutrient, predominantly distinguished by super-narrow range between its deficiency and toxicity concentrations, which depends upon boron speciation in the growth media and form of living organisms. Moreover, the significant variations in its mobility amid different species, and distinctive inter and intra-species responses to extreme concentrations. Therefore, it is necessary to screen the bioavailability, speciation, biogeochemical cycling and exposure pathways of boron in the environment. The genes involved in the tolerance mechanism of boron in different plants were discussed in the current review paper. The functions related to scarcity and excess of boron concentration are assessed. The diverse plants implicated in phytoremediation of boron contaminated sites that restrict boron accumulation in food crops and health risks associated with soils containing deficit or surplus boron concentration were appraised. Ultimately, a summary of numerous strategies involved in the recovery and repair of boron-contaminated soils have been reviewed.
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Fair Trade and Staple Foods: A Systematic Review
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Sustainability certification schemes such as FAIRTRADE, FLO, WFTO and FT-USA have gained increasing markets. The significant growth of the fair trade (FT) movement in the last decades draws attention to ethical consumption. FT's aim at improving the livelihoods of producers in developing countries and promotion of social change is considered a model that shows the benefits of trade to development. Although conveying a large number of publications, not all questions about the movement are explored. The literature is prolific on coffee, cacao, flowers, wine, and gold. In contrast, the engagement with staple foods - a prominent globally traded food category - seems minor. The primary objective of this review was to map the existing literature about FT and staple foods; then, to investigate the role of staple foods in the FT movement. The search strategy was designed to retrieve publications on the intersection of FT and staple foods. To date, there is no review about FT and staple foods nexus. Our systematic review addressed this gap considering FT as an alternative capable of addressing unsustainable food consumption and production impacts. Our research protocol included keywords searching across four databases, screening, and comparative analysis. From 283 documents retrieved, 49 were deemed relevant to reflect the role of staple foods in the FT movement. This systematic review discusses challenges and opportunities for the FT model to further engage with staples and recommends improvement of its environmental credentials. The present study can contribute by informing decision makers, policy makers, businesses, NGOs, producers, and consumers.
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NKL-24: A novel antimicrobial peptide derived from zebrafish NK-lysin that inhibits bacterial growth and enhances resistance against Vibrio parahaemolyticus infection in Yesso scallop, Patinopecten yessoensis
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The extensive use of antibiotics in aquaculture has resulted in the prevalence of antibiotic-resistant bacteria and, consequently, new antibacterial strategies or drugs with clear modes of action are urgently needed. Antimicrobial peptides (AMPs) are currently widely considered as alternatives to antibiotics in the treatment of infections in aquatic animals. In this study, we aimed to evaluate the effects of NKL-24, a truncated peptide derived from zebrafish NK-lysin, against Yesso scallop (Patinopecten yessoensis) pathogen, Vibrio parahaemolyticus. The results showed that NKL-24 had a potent antibacterial effect against V. parahaemolyticus via a membrane active cell-killing mechanism. The in vitro study showed that sub-lethal levels of NKL-24 obviously reduced bacterial swimming ability and downregulated the transcription of the selected genes associated with V. parahaemolyticus virulence. Studies on NKL-24 biosafety in hemocytes and in Yesso scallop have shown no adverse effects from this peptide. Bacteria challenge test results demonstrated that NKL-24 significantly decreased the mortality and inhibited bacterial growth in the scallop infected with V. parahaemolyticus, while further in vivo examination revealed that NKL-24 could enhance non-specific immune parameters. Moreover, NKL-24 was capable of modulating a series of V. parahaemolyticus-responsive genes in the scallop. These results suggest the protective action of NKL-24 against V. parahaemolyticus and the potential of this peptide as a promising candidate for aquaculture applications.
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Effects of light-emitting diodes (LEDs) on lipid production of the aerial microalga Coccomyxa sp. KGU-D001 under liquid- and aerial-phase conditions
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Algal biofuels are a promising alternative to fossil fuels, but their widespread use is hindered by problems with mass production. Light-emitting diodes (LEDs) with specific light wavelengths could be used as an energy source for algal growth and lipid synthesis. In this study, the effects of light source on the biomass and lipid production of the aerial microalga Coccomyxa sp. KGU-D001 were evaluated using LEDs. The integration of two-phase cultures, including growth and lipid production under the stress of nitrate depletion, was assessed for efficient lipid production under liquid- or aerial-phase conditions. Different wavelengths of light (blue, green, and red) were tested under liquid- and aerial-phase conditions. Under aerial-phase culture, the fatty acid contents in biofilm reached 320 mg g DWC-1 with the red LEDs. In view of these findings, we describe a one-step culture method for growth and lipid accumulation in algal biofilm under aerial-phase culture with red LED irradiation. When Coccomyxa biofilm was cultured on wet cotton wool with BBM in a petri dish under the red LED, it was able to grow and accumulate lipids under the aerial-phase condition. Based on the results of this study, a potential method for a continuous biodiesel production system is proposed.
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Geomorphological effects of animals in mountain streams: Impact and role.
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Elucidating the impact of faunal activity on stream channels is an emerging field wherein ecologists, fluvial geomorphologists, and engineers collaborate to research and manage fluvial ecosystems. Here, we focused on the geomorphological effects of animals in mountain streams. This ecosystem merits conservation measures as it furnishes cold-water refugia. We searched literature addressing the impact of various animal taxa on the river/stream bed structure. The citation sources were the Web of Science, Scopus, and ScienceDirect databases covering 1975-early 2020. We examined all animal taxa with documented or potential zoogeomorphological effects upon streams and assigned spatiotemporal scales to their impacts. Interpreting the literature was challenging due to a lack of uniformity in data treatment between species groups and over time. Though human interactions prevail in stream channels, animals also have a substantial effect on a spatial scale and their modifications are more durable. In general, animals markedly influence aquatic habitats. This literature compilation revealed much information about the geomorphological effects of beavers, redd-building fish, and large bottom-dwelling fish. The scale of impact of invertebrates such as crayfish or case-building caddisfly larvae on stony-gravel bottoms has previously been demonstrated. However, previous research has concentrated on only one taxon and has not demonstrated the bioaccumulation effect of multiple taxa. Quantitative data have been presented only for large terrestrial mammals crossing streams. There was comparatively little information on the impact of other terrestrial taxa on stream geomorphology. There were also few or no quantitative data on the impacts of aquatic fauna on mountain stream channels. Much has been reported about the effects of burying invertebrates but relatively little is known about the impacts of burying fish such as lamprey larvae. The present review highlights numerous outstanding information gaps. It is hoped that this review will facilitate ongoing zoogeomorphological research.
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Carbon myopia: the urgent need for integrated social, economic and environmental action in the livestock sector.
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Livestock have long been integral to food production systems, often not by choice but by need. While our knowledge of livestock greenhouse gas emissions (GHG) mitigation has evolved, the prevailing focus has been - somewhat myopically - on technology applications associated with mitigation. Here, we (1) examine the global distribution of livestock GHG emissions, (2) explore social, economic and environmental co-benefits and trade-offs associated with mitigation interventions, and (3) critique approaches for quantifying GHG emissions. This review uncovered many insights. First, while GHG emissions from ruminant livestock are greatest in low and middle-income countries (LMIC; globally, 66% of emissions are produced by Latin America and the Caribbean, East and southeast Asia, and south Asia), the majority of mitigation strategies are designed for developed countries. This serious concern is heightened by the fact that 80% of growth in global meat production over the next decade will occur in LMIC. Second, few studies concurrently assess social, economic and environmental aspects of mitigation. Of the 54 interventions reviewed, only 16 had triple-bottom line benefit with medium-high mitigation potential. Third, while efforts designed to stimulate adoption of strategies allowing both emissions reduction (ER) and carbon sequestration (CS) would achieve the greatest net emissions mitigation, CS measures have greater potential mitigation and co-benefits. The scientific community must shift attention away from the prevailing myopic lens on carbon, towards more holistic, systems-based, multi-metric approaches that carefully consider the raison d'être for livestock systems. Consequential life-cycle assessments and systems-aligned 'socio-economic planetary boundaries' offer useful starting points that may uncover leverage points and cross-scale emergent properties. Derivation of harmonised, globally-reconciled sustainability metrics requires iterative dialogue between stakeholders at all levels. Greater emphasis on the simultaneous characterisation of multiple sustainability dimensions would help avoid situations where progress made in one area causes maladaptive outcomes in other areas.
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Current incidence, treatment costs and seasonality of pinkeye in Australian cattle estimated from sales of three popular medications
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Pinkeye is an economically important ocular disease occurring in all cattle producing areas of Australia. This study was undertaken to estimate the frequency of occurrence of the disease in Australia and treatment costs of the disease to the cattle industry using the sales of popular pinkeye medications as a surrogate indicator. Monthly sales data for Orbenin® Eye Ointment, Opticlox® Eye Ointment and Terramycin® Pinkeye Aerosol were analysed. We first estimated the number of cattle that can be treated with a syringe or a can and then using the data of sales of these pinkeye medications and the total cattle population of Australia, estimated the incidence of pinkeye. Probability distributions were used to include uncertainty around the estimates. Costs to producers were estimated based on retail prices of these medications. The results indicated that 732,864 syringes of Orbenin® Eye Ointment, 134,800 syringes of Opticlox® Eye Ointment and 27,755 cans of Terramycin® Pinkeye Aerosol are sold in Australia per year. Based on some assumptions of the number of cases treated by these drugs and number of cases left untreated, the number of cattle affected by pinkeye each year in Australia was estimated to be 2.80 million (95 % PI: 1.76, 4.65) or 10.25 % (95 % PI: 6.43, 16.97) of the entire Australian cattle herd. The cattle industry is expected to lose AU$ 9.67 million (95 % PI: 8.56, 13.11) each year just considering the cost of these three drugs. The results suggest that losses due to pinkeye in the Australian cattle industry are considerably higher than previously thought and should be used to inform the development of disease prevention and control policies.
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Meta‐analysis and systematic literature review of climate change effects on livestock welfare
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Climate change is a phenomenon that includes different dramatic events that deeply affect the physiology of animal species both directly and indirectly with qualitative–quantitative impacts on livestock performances and health. The implications of climate change on animal welfare and on production demand are complex and call for a multidisciplinary approach which involved both animal science and economic sciences. The current technical report will describe the activities performed by the fellow while placed at the University of Foggia, Department of Agriculture, Natural Resources and Engineering, in Italy. Furthermore, the work programme offered by the hosting site consisted in performing a systematic literature review, following the Preferred Reporting Items for Systematic Reviews and Meta‐analyses (PRISMA) Statement, and a quantitative synthesis of the literature on the impact of climate change events (e.g. heat stress) on livestock welfare and productivity and the effect of heat relieving strategies on the animals’ performance.
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Northern Cerrado Native Vegetation is a Refuge for Birds Under Current Climate Change
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Climate Change is already seen as one of the biggest threats to biodiversity in the 21st century. Not much studies direct attention to its effects on whole communities of threatened hotspots. In the present work, we combine ecological niche modelling (ENM) with a future climate scenario of greenhouse gases emissions to study the future changes in alpha and beta diversity of birds of the Brazilian Cerrado biome, a hotspot of biodiversity with high velocity of climate change and agricultural expansion. In general, we found heterogeneous results for changes in species richness, spatial and temporal taxonomic and functional beta diversity, and mean ecological distinctiveness. Contrary to a previous study on Cerrado mammals, species richness is expected to increase in Northern Cerrado, where homogenization of communities (decreasing spatial turnover) is also expected to occur especially through local invasions. We show that biotic homogenization (which is composed of local extinction of natives and local invasion of exotic species) will occur in two biological groups but through different subprocesses: local extinctions for mammals and local invasions for birds. Distinct conservation management actions should be directed depending on the outcomes of analyzes of alpha and spatial and temporal beta diversity, for example controlling species invasions in Northern Cerrado. Conservation studies should continue evaluating Cerrado in Brazil even under covid pandemic, as environmental situation in the country is not good and incentives for scientific studies are almost nonexistent.
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Change of clopyralid concentration in recycled beef cattle compost
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Composting of beef cattle manure using sawdust or recycled compost as a bulking agent was investigated for the management of clopyralid risk, such as changes in the clopyralid concentration and the mechanism of clopyralid accumulation caused by recycled compost. These raw materials were composted with laboratory equipment, which was controlled at 60â after the temperature peak by autothermal composting. Clopyralid concentration did not changed during composting in the thermophilic phase; on the contrary, it increased because clopyralid accumulated in compost when recycled compost was used repeatedly as a bulking agent. The clopyralid accumulation ratio (ratio of clopyralid concentration to that in the first compost) could be explained by a model using a recurrence formula, and a correlation existed between the calculated (model) accumulation ratios and measured accumulation ratios (R2 = 0.78). Using this model, the excessive accumulation of clopyralid could be controlled when using recycled compost as a bulking agent with lower moisture content or when part of the recycled compost was replaced by another bulking agent, even if recycled compost had high moisture content. In future work, the model and its considerations should be verified in a field test.
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Evaluation of Galactia striata (Jacq.) Urb, under two fertiization levels/ Avaliação agronômica de Galactia striata (jacó.) urb. sob dois níveis de adubação, em Nova Odessa, SP
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Present work was carried out at the instituto de Zootecnia in Nova Odessa, State of S5o Paulo, Brazil, from November l0th, 1980 to March l8th, 1982 and had the main objective to compare two Galactia striata ecotypes selected in the introduction field together with the commercial one. lt was evaluated the inicial stablishment, yield, persistance. quality and nutritional requirements under two levels of fertility: a without fertilization and bi with a basic fertilization acording to the soil analysis (120kg/ha of P2 O5 and 80kg/ha of K2O at the sowing time and after each cutting). The essay had the intention of release a new cultivar of Galactia striata for commercial purpouses. The local soil was a Red-Yellow Podzolic Laras variation and the experimental design was a factorial 3 x 2 with four replications. It was observed that the plant has stablished in 99 days. Fertilizing did not make significant eftect on its stablishment, persistence, weed emergence, yield and percentage of crude protein. Galactia striata cv. Yaranashowed excelent behaviour, yield and nutritiorial and sanity aspects during all the experiment. Yaranas CP and dry matter productions were respectively 50,87% and 50,83% of the total DM production of the other cultivars. So, the Agronomy Section decided to release it as a new cultivar for commercial use named cv. Yarana.
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Personality affects dynamics of an experimental pathogen in little brown bats
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Host behaviour can affect host–pathogen dynamics and theory predicts that certain individuals disproportionately infect conspecifics during an epidemic. Consistent individual differences in behaviour, or personality, could influence this variation with the most exploratory or sociable individuals most likely to spread pathogens. We quantified exploration and sociability in little brown bats (Myotis lucifugus) and then experimentally manipulated exposure to a proxy pathogen (i.e. ultraviolet (UV) fluorescent powder) to test two related hypotheses: (i) more sociable and more exploratory individuals would be more likely to transmit infections to other individuals, and (ii) more sociable and more exploratory individuals uninfected with an invading pathogen would be more likely to acquire infections. We captured 10 groups of 16 bats at a time and held each group in an outdoor flight tent equipped with roosting-boxes. We used hole-board and Y-maze tests to quantify exploration and sociability of each bat and randomly selected one individual from each group for ‘infection’ with non-toxic, UV fluorescent powder. Each group of 10 bats was released into the flight tent for 24 h, which represented an experimental infection trial. After 24 h, we removed bats from the trial, photographed each individual under UV light and quantified infection intensity from digital photographs. As predicted, the exploratory behaviour of the experimentally infected individual was positively correlated with infection intensity in their group-mates, while more exploratory females had higher pathogen acquisition. Our results highlight the potential influence of host personality and sex on pathogen dynamics in wildlife populations.
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Landscaping the behavioural ecology of primate stone tool use
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Ecology is fundamental to the development, transmission, and perpetuity of primate technology. Previous studies on tool site selection have addressed the relevance of targeted resources and raw materials for tools, but few have considered the broader foraging landscape. In this first landscape-scale study of the ecological contexts of wild chimpanzee (Pan troglodytes verus) tool-use, we investigate the conditions required for nut-cracking to occur and persist over time at discrete locations in Bossou (Guinea). We examine this at three levels: selection, frequency of use, and inactivity. We find that, further to the presence of a nut tree and availability of raw materials, abundance of food-providing trees as well as proximity to nest sites were significant predictors of nut-cracking occurrence. This suggests that the spatial distribution of nut-cracking sites is mediated by the broader behavioural landscape and is influenced by non-extractive foraging of predictable resources, as well as non-foraging activities. Additionally, tool availability was greater at sites with higher frequency of nut-cracking and was negatively correlated with site inactivity. Our findings indicate that the technological landscape of the Bossou chimpanzees shares affinities with the ‘favoured places’ model of hominin site formation and provides new insights for reconstructing ancient patterns of landscape use.
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Genome skimming-based simple sequence repeat (SSR) marker discovery and characterization in Grevillea robusta
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Proteaceae, a largely southern hemisphere family consisting of 80 genera distributed in Australia and southern Africa as its centres of greatest diversity, also extends well in northern and southern America. Under this family, Grevillea robusta is a fast-growing species got popularity in farm and avenue plantations. Despite the ecological and economic importance, the species has not yet been investigated for its genetic improvement and genome-based studies. Only a few molecular markers are available for the species or its close relatives, which hinders genomic and population genetics studies. Genetic markers have been intensively applied for the main strategies in breeding programs, especially for the economically important traits. Hence, it is of utmost priority to develop genomic database resources and species-specific markers for studying quantitative genetics in G. robusta. Given this, the present study aimed to develop de novo genome sequencing, robust microsatellites markers, sequence annotation and their validation in different stands of G. robusta in northern India. Library preparation and sequencing were carried out using Illumina paired-end sequencing technology. Approximately, ten gigabases (Gb) sequence data with 70.87 million raw reads assembled into 425,923 contigs (read mapped to 76.48%) comprising 455 Mb genome size (23 × coverage) generated through genome skimming approach. In total, 9421 simple sequence repeat (SSR) primer pairs were successfully designed from 13,335 microsatellite repeats. Afterward, a subset of 161 primer pairs was randomly selected, synthesized and validated. All the tested primers showed successful amplification but only 13 showed polymorphisms. The polymorphic SSRs were further used to estimate the measures of genetic diversity in 12 genotypes each from the states of Punjab, Haryana, Himachal Pradesh and Uttarakhand. Importantly, the average number of alleles (N(a)), observed heterozygosity (H(o)), expected heterozygosity (H(e)), and the polymorphism information content (PIC) were recorded as 2.69, 0.356, 0.557 and 0.388, respectively. The availability of sequence information and newly developed SSR markers could potentially be used in various genetic analyses and improvements through molecular breeding strategies for G. robusta. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12298-021-01035-w.
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Archaeal and Bacterial Diversity and Distribution Patterns in Mediterranean-Climate Vernal Pools of Mexico and the Western USA
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Biogeographic patterns in microorganisms are poorly understood, despite the importance of microbial communities for a range of ecosystem processes. Our knowledge of microbial ecology and biogeography is particularly deficient in rare and threatened ecosystems. We tested for three ecological patterns in microbial community composition within ephemeral wetlands—vernal pools—located across Baja California (Mexico) and California (USA): (1) habitat filtering; (2) a latitudinal diversity gradient; and (3) distance decay in community composition. Paired water and soil samples were collected along a latitudinal transect of vernal pools, and bacterial and archaeal communities were characterized using 16S rDNA sequencing. We identified two main microbial communities, with one community present in the soil matrix that included archaeal and bacterial soil taxa, and another community present in the overlying water that was dominated by common freshwater bacterial taxa. Aquatic microbial communities were more diverse in the north, and displayed a significant but inverted latitudinal diversity pattern. Aquatic communities also exhibited a significant distance-decay pattern, with geographic proximity, and precipitation explaining part of the community variation. Collectively these results indicate greater sensitivity to spatial and environmental variation in vernal pool aquatic microbial communities than in soil microbial communities. We conclude that vernal pool aquatic microbial communities can display distribution patterns similar to those exhibited by larger organisms, but differ in some key aspects, such as the latitudinal gradient in diversity. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00248-021-01941-2.
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Integration of shared-pathogen networks and machine learning reveals the key aspects of zoonoses and predicts mammalian reservoirs
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Diseases that spread to humans from animals, zoonoses, pose major threats to human health. Identifying animal reservoirs of zoonoses and predicting future outbreaks are increasingly important to human health and well-being and economic stability, particularly where research and resources are limited. Here, we integrate complex networks and machine learning approaches to develop a new approach to identifying reservoirs. An exhaustive dataset of mammal–pathogen interactions was transformed into networks where hosts are linked via their shared pathogens. We present a methodology for identifying important and influential hosts in these networks. Ensemble models linking network characteristics with phylogeny and life-history traits are then employed to predict those key hosts and quantify the roles they undertake in pathogen transmission. Our models reveal drivers explaining host importance and demonstrate how these drivers vary by pathogen taxa. Host importance is further integrated into ensemble models to predict reservoirs of zoonoses of various pathogen taxa and quantify the extent of pathogen sharing between humans and mammals. We establish predictors of reservoirs of zoonoses, showcasing host influence to be a key factor in determining these reservoirs. Finally, we provide new insight into the determinants of zoonosis-sharing, and contrast these determinants across major pathogen taxa.
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Fungal transformation of natural and synthetic cobalt-bearing manganese oxides and implications for cobalt biogeochemistry.
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Manganese oxide minerals can become enriched in a variety of metals through adsorption and redox processes, and this forms the basis for a close geochemical relationship between Mn oxide phases and Co. Since oxalate-producing fungi can effect geochemical transformation of Mn oxides, an understanding of the fate of Co during such processes could provide new insights on the geochemical behaviour of Co. In this work, the transformation of Mn oxides by Aspergillus niger was investigated using a Co-bearing manganiferous laterite, and a synthetic Co-doped birnessite. A. niger could transform laterite in both fragmented and powder forms, resulting in formation of biomineral crusts that were composed of Mn oxalates hosting Co, Ni and, in transformed laterite fragments, Mg. Total transformation of Co-doped birnessite resulted in precipitation of Co-bearing Mn oxalate. Fungal transformation of the Mn oxide phases included Mn(III,IV) reduction by oxalate, and may also have involved reduction of Co(III) to Co(II). These findings demonstrate that oxalate-producing fungi can influence Co speciation in Mn oxides, with implications for other hosted metals including Al and Fe. This work also provides further understanding of the roles of fungi as geoactive agents which can inform potential applications in metal bioremediation, recycling and biorecovery.
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High Body Temperature is an Unlikely Cause of High Viral Tolerance in Bats
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The global SARS-CoV-2 pandemic and the role of bats in zoonotic spillover have renewed interest in the flight-as-fever hypothesis, which posits that high body temperatures experienced by bats during flight contribute to their high viral tolerance. We argue that flight-as-fever is unlikely to explain why bats harbor more viruses than other mammals on the basis of two lines of reasoning. First, flight temperatures reported in the literature overestimate true flight temperatures because of methodologic limitations. Second, body temperatures in bats are only high relative to humans, and not relative to many other mammals. We provide examples of mammals from diverse habitats to show that temperatures in excess of 40 C during activity are quite common in species with lower viral diversity than bats. We caution scientists against stating the flight-as-fever hypothesis as unquestioned truth, as has repeatedly occurred in the popular media in the wake of the SARS-CoV-2 pandemic.
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Adubação Nitrogenada E Tratamento Químico Sobre Ocorrência De Tilletia Barclayana Em Arroz Irrigado
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ABSTRACT This study was carried out in order to evaluate the effect of nitrogen fertilization and the timing of chemical application on the control and severity of Tilletia barclayana. Two experiments were carried out, with the application of 108 and 135 kg of N ha-1. Each test involved the aerial application of fungicides based on Myclobutanil (75, 150, 225 and 300 g ha-1 a.i.), Trifloxystrobin + Propiconazole (93.75 + 93.75 g ha-1 a.i.) and an untreated control; applications in R3 and R4. The parameters evaluated were the incidence and severity of disease, grain quality and yield. The incidence and severity of the disease were affected by levels of nitrogen, fungicides and by the time of application, which influenced grain quality; however no influence of the two factors was observed in relation to the yield.
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The abundance of yellow-legged gulls Larus michahellis breeding in the historic centre of Venice, Italy and the initial effects of the new waste collection policy on the population
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The yellow-legged gull Larus michahellis has undergone widespread colonization of the urban environment in the recent past. The first urban breeding gulls were recorded in the historical centre of Venice, Italy, in 2000, and by 2005 there were already 24 roof-nesting pairs, with this number increasing significantly over the last decade. In 2016, a new door-to-door garbage collection system was introduced in Venice to prevent the accumulation of rubbish in the streets and limit the trophic resources available for the species. This study provides an up-to-date estimate of the Venice yellow-legged gull urban population using distance sampling method. We also studied the effect of the new waste collection system on the species by comparing the population estimate before (2017) and after (2018) the full implementation of this change and by analysing the trend of individuals collected in the old town by the wildlife recovery service during 2010–2018. Results estimated ca. 430 breeding pairs in June 2018 showing a 36% decrease with respect to 2017. We also found a decrease in the number of 1-year-old birds and pulli collected by the wildlife recovery service starting from 2016, when the policy implementation began. Our data did not show a significant decrease in the overall number of individuals, suggesting that the new policy has a stronger effect on the breeding success of the species than on adult survival. This study emphasizes the importance of preventing rubbish accumulation in the streets as factor for reducing the abundance of urban yellow-legged gulls. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11252-021-01175-7.
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Solitary Living Brings a Decreased Weight and an Increased Agility to the Domestic Silkworm, Bombyx mori
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SIMPLE SUMMARY: We identified and validated that solitary living brings a decreased weight and an increased agility to silkworms. Solitary silkworms have a faster movement in response to food or physical stress than group-living counterparts. These contradict previous thoughts that solitary or lonely life is always harmful to animals or humans. We identified differently expressed genes (DEGs) and microRNAs (DEmiRNAs) resulted from solitary living. These DEGs and DEmiRNAs are functionally associated with the phenotypic changes led by solitary living. ABSTRACT: The domestic silkworms, Bombyx mori, always live in groups and little is known of the outcomes of solitary living. We bred solitary silkworms and performed a comprehensive investigation of the difference between solitary and group-living silkworms. The results show that solitary silkworms had significantly lower weights than group-living counterparts. Moreover, solitary silkworms had faster movements under food luring or heat stress than the group-living ones, supported by extensive behavior experiments. These findings inferred that an increased agility resulted from solitary living. For an understanding of the molecular mechanism associated with solitary living, we performed integrated mRNA and miRNA (microRNA) sequencing of tissues for solitary and group-living silkworms. We identified 165 differently expressed genes (DEGs) and 6 differently expressed miRNAs between the solitary and group-living silkworms. Functional and pathway analyses indicated that these DEGs are associated with weight loss and agility increase. These findings compose a sketch depicting an association between the phenotypes and genes resulted from solitary living and refresh the understanding of solitary living and loneliness, which has an increased prevalence in our modern society.
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A meta‐analysis suggesting that the relationship between biodiversity and risk of zoonotic pathogen transmission is idiosyncratic
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Zoonotic pathogens are significant burdens on global public health. Because they are transmitted to humans from non‐human animals, the transmission dynamics of zoonoses are necessarily influenced by the ecology of their animal hosts and vectors. The ‘dilution effect’ proposes that increased species diversity reduces disease risk, suggesting that conservation and public health initiatives can work synergistically to improve human health and wildlife biodiversity. However, the meta‐analysis that we present here indicates a weak and highly heterogeneous relationship between host biodiversity and disease. Our results suggest that disease risk is more likely a local phenomenon that relies on the specific composition of reservoir hosts and vectors, and their ecology, rather than patterns of species biodiversity.
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Efeito Da Suplementação De Fonte Inorgânica De Ferro No Perfil Metaloproteômico Da Geleia Real Produzida Por Abelhas Apis Mellifera L
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O objetivo do presente estudo foi avaliar o efeito de suplementação com fonte de ferro inorgânico na qualidade da geleia real produzida por abelhas A. mellifera, por meio de análises proteômicas. Foram utilizadas 12 colônias de abelhas A. mellifera africanizadas, alimentadas com xarope de açúcar (proporção de 1:1 de água e açúcar cristal) suplementado ou não com sulfato ferroso heptahidratado (contendo 20% de ferro), nas concentrações de 0, 25, 50 e 100 mg L-1. A produção de geleia real foi realizada por meio da técnica de transferência de larvas, colhida, armazenada em vials estéreis e mantidas sob congelamento. Eletroforese bidimensional (2D-PAGE) foi usada para fracionamento das proteínas da geleia real e o ferro quantificado por técnica de espectroscopia de absorção atômica de chama (FAAS), com identificação das proteínas por Espectrometria de massas com ionização por eletrospray (ESI-MS/MS). Os resultados foram avaliados por ANOVA, seguido do teste de Tukey para verificar diferenças entre as médias (P<0,05). Observou-se que a suplementação da dieta com o mineral ferro afetou o teor proteico e o número de spots em quase todos os tratamentos e meses analisados. Observa-se ainda que a dieta contendo 100 mg L-1 de Fe apresentou maior numero de spots contendo este mineral, bem como no abdome das abelhas. As principais proteínas contendo Fe foram classificadas como do grupo MRJPs (Major Royal Jelly Proteins). Os resultados encontrados mostram que o ferro influência na qualidade da geleia real, sugerindo que sua presença na alimentação pode melhorar as condições nutricionais e modular seu valor nutritivo.
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Ecological and Evolutionary Challenges for Wildlife Vaccination
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Wildlife vaccination is of urgent interest to reduce disease-induced extinction and zoonotic spillover events. However, several challenges complicate its application to wildlife. For example, vaccines rarely provide perfect immunity. While some protection may seem better than none, imperfect vaccination can present epidemiological, ecological, and evolutionary challenges. While anti-infection and antitransmission vaccines reduce parasite transmission, antidisease vaccines may undermine herd immunity, select for increased virulence, or promote spillover. These imperfections interact with ecological and logistical constraints that are magnified in wildlife, such as poor control and substantial trait variation within and among species. Ultimately, we recommend approaches such as trait-based vaccination, modeling tools, and methods to assess community- and ecosystem-level vaccine safety to address these concerns and bolster wildlife vaccination campaigns.
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Dietary niches of creodonts and carnivorans of the late Eocene Cypress Hills Formation
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Modern North American carnivorous mammal assemblages consist of species from a single clade: the Carnivora. Carnivorans once coexisted with members of other meat-eating clades, including the creodonts (Hyaenodontida and Oxyaenida). Creodonts, however, went extinct in North America during the late Eocene and early Oligocene, potentially due to niche overlap and resource competition with contemporary carnivorans. In this study, we employ a community ecology approach to understand whether the dietary niches of coexisting creodonts and carnivorans overlapped during the late Eocene (Chadronian North American Land Mammal Age), a time when creodonts were dwindling and carnivorans were diversifying. We quantify niche overlap based on inferences of diet from carnassial tooth shape estimated using Orientation Patch Count, Dirichlet’s Normal Surface Energy, and linear dental measurements as well as from body mass for all species in the Calf Creek Local Fauna of Cypress Hills, Saskatchewan (Treaty 4 land). Although creodonts and carnivorans shared characteristics of their carnassial tooth shape, suggesting similar chewing mechanics and feeding habits, we find that marked differences in body size likely facilitated niche partitioning, at least between the largest creodonts and carnivorans. Calculations of prey focus masses and prey mass spectra indicate that only the smallest creodont may have experienced significant competition for prey with the coeval carnivorans. We suggest that the ultimate extinction of creodonts from North America during the late Eocene and Oligocene was unlikely to have been driven by factors related to niche overlap with carnivorans.
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Simulations with Australian dragon lizards suggest movement-based signal effectiveness is dependent on display structure and environmental conditions
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Habitat-specific characteristics can affect signal transmission such that different habitats dictate the optimal signal. One way to examine how the environment influences signals is by comparing changes in signal effectiveness in different habitats. Examinations of signal effectiveness between different habitats has helped to explain signal divergence/convergence between populations and species using acoustic and colour signals. Although previous research has provided evidence for local adaptations and signal divergence in many species of lizards, comparative studies in movement-based signals are rare due to technical difficulties in quantifying movements in nature and ethical restrictions in translocating animals between habitats. We demonstrate herein that these issues can be addressed using 3D animations, and compared the relative performance of the displays of four Australian lizard species in the habitats of each species under varying environmental conditions. Our simulations show that habitats differentially affect signal performance, and an interaction between display and habitat structure. Interestingly, our results are consistent with the hypothesis that the signal adapted to the noisier environment does not show an advantage in signal effectiveness, but the noisy habitat was detrimental to the performance of all displays. Our study is one of the first studies for movement-based signals that directly compares signal performance in multiple habitats, and our approach has laid the foundation for future investigations in motion ecology that have been intractable to conventional research methods.
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High prevalence and diversity of beta-lactamase-encoding bacteria in cryosoils and ancient permafrost
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Background Antimicrobial resistance is one of the major challenges affecting public health. It is mostly due to the continuous emergence of extended-spectrum β-lactamase from various environments followed by their rapid dissemination and selection in clinical settings. The warming of Earth’s climate is the other global threat facing human society, in particular with the Arctic regions experiencing a twice faster warming than the global average and permafrost affected by widespread thawing. A potentially dreadful combination of these two threats would be the release and dispersion of harmful microbes that have remained confined to largely uninhabited Arctic regions, or are stored dormant in permafrost. Methods Environmental DNA was isolated from 12 soil samples from various Arctic and subarctic pristine regions in Siberia (Yakutia and Kamchatka), including nine permafrost samples collected at various depths. The large datasets obtained from high throughput sequencing was assembled in contigs and their protein-gene contents predicted. We used exhaustive similarity searches to perform taxonomical assignments of bacterial, archaeal, and eukaryotic organisms, as well as DNA viruses. In addition, we specifically identified β-lactamase genes and their prevalence per bacterial genome estimated through the detection of two universal single copy genes. Findings A total of 9.217 1011 bp were exploited, leading to a total of 525,313 contigs at least 5kb in size. The DNA content of the various samples was found to be highly variable, not strictly correlated with the depth or radio-carbon-based deposit age, and most likely linked to the global density of microbes trapped in the corresponding permafrost layers. Bacteria account for more than 90% of the contigs in most samples, followed by Eukaryotes and Archaea (always lower than 10%). Viruses represented less than 2% of all contigs in all samples. The taxonomic profiles of surface cryosoils and deep permafrost samples exhibited a high diversity, including between permafrost samples originating from various depths in the same borehole. In all samples, bacterial contigs carrying different β-lactamases from class A to D were identified. Interpretation No clear common taxonomic feature could be found shared by surface cryosoils or ancient permafrost layers. However, most samples (9/12) exhibited a high frequency of β-lactamase genes, with an estimated average close to 1 copy/bacterial genome. In addition to the well-documented reactivation of infectious ancient pathogens (bacteria, viruses, protozoa), we show now that global warming could contribute to the emergence of new antibiotic resistances through the mobilization by contemporary bacteria of ancient DNA released from thawing permafrost. Funding CNRS PRC research grant (PRC1484-2018) to C.A. E C-F was supported by a PhD grant (DGA/DS/MRIS) #2017 60 0004. GG and JS were funded by ERC PETA-CARB (#338335) and the HGF Impulse and Networking Fund (ERC-0013).
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Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols
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This paper presents the performance of two eukaryotic genomic ribosomal regions, ITS1 and ITS2, in describing fungal diversity in aerosol samples using amplicon-based High-Throughput Sequencing (HTS). Composting sites, biomethanization facilities, and dairy farms, all affected by the presence of fungi, were visited to collect air samples. The amplicon-based HTS approach is a target enrichment method that relies on the amplification of a specific target using particular primers before sequencing. Thus, the results are highly dependent on the quality of amplification. For this reason, the authors of this paper used a shotgun metagenomic approach to compare its outcome with the amplicon-based method. Indeed, shotgun metagenomic does not rely on any amplification prior to sequencing, because all genes are sequenced without a specific target. In addition, culture methods were added to the analyses in biomethanization and dairy farms samples to validate their contribution to fungal diversity of aerosols. The results obtained are unequivocal towards ITS1 outperformance to ITS2 in terms of richness, and taxonomic coverage. The differential abundance analysis did demonstrate that some taxa were exclusively detected only by ITS2, and vice-versa for ITS1. However, the shotgun metagenomic approach showed a taxonomic profile more resembling to ITS1 than ITS2. Based on these results, neither of the barcodes evaluated is perfect in terms of distinguishing all species. Using both barcodes offers a broader view of the fungal aerosol population. However, with the actual knowledge, the authors strongly recommend using ITS1 as a universal fungal barcode for quick general analyses of diversity and when limited financial resources are available, primarily due its ability to capture taxonomic profiles similar to those obtained using the shotgun metagenomic. The culture comparison with amplicon-based sequencing showed the complementarity of both approaches in describing the most abundant taxa.
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Modelling the fate and transport of colloidal particles in association with BPA in river water
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A simplified modelling approach for illustrating the fate of emerging pollutants can improve risk assessment of these chemicals. Once released into aquatic environments, these pollutants will interact with various substances including suspended particles, colloidal or nano particles, which will greatly influence their distribution and ultimate fate. Understanding these interactions in aquatic environments continues to be an important issue because of their possible risk. In this study, bisphenol A (BPA) in the water column of Bentong River, Malaysia, was investigated in both its soluble and colloidal phase. A spatially explicit hydrological model was established to illustrate the associated dispersion processes of colloidal-bound BPA. Modelling results demonstrated the significance of spatial detail in predicting hot spots or peak concentrations of colloidal-bound BPA in the sediment and water columns as well. The magnitude and setting of such spots were system based and depended mainly on flow conditions. The results highlighted the effects of colloidal particles' concentration and density on BPA's removal from the water column. It also demonstrated the tendency of colloidal particles to aggregate and the impact all these processes had on BPA's transport potential and fate in a river water. All scenarios showed that after 7.5-10 km mark BPA's concentration started to reach a steady state with very low concentrations which indicated that a downstream transport of colloidal-bound BPA was less likely due to minute BPA levels.
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Consumo y dispersión de semillas de Solanum schlechtendalianum (Solanaceae) por el murciélago frugívoro Sturnira ludovici (Phyllostomidae)/ Consumption and seed dispersion of Solanum schlechtendalianum (Solanaceae) by the fruit bat Sturnira ludovici (Phyllostomidae)
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Documentamos el primer registro de consumo y dispersión de semillas de Solanum schlechtendalianum (Solanaceae) por el murciélago de charreteras de tierras altas (Sturnira ludovici). La ingesta representó el 13%, 4% y el 80% del contenido total de su dieta en tres diferentes localidades estudiadas. Mediante experimentos de germinación in situ, determinamos un porcentaje de germinación de 30% de un total de 80 semillas digeridas; esto sugiere que S. ludovici actuá como dispersor legítimo de S. schlechtendalianum.
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Risk Preference, Health Risk Perception, and Environmental Exposure Nexus: Evidence from Rural Women as Pig Breeders, China
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Rural women are an integral part of the agricultural economy. Still, their exposure to environmental pollution, especially in the context of risk preference and health risk perception, has not gained much attention in the existing literature. So to explore this notion, a survey and experimental data of 714 rural Chinese women as pig breeders are taken, we innovatively evaluate the degree of environmental exposure from the pre-exposure, in-exposure, post-exposure intervention of women breeders, and two-stage least squares (2SLS) method is employed to address the endogeneity issue between health risk perception and environmental exposure. The results show that rural women breeders suffer from severe environmental exposure, and the degree of environmental exposure is up to 72.102(Min = 0, Max = 100). Risk preference also emerges as a crucial determinant behind their environmental exposure, but health risk perception significantly deters the degree of environmental exposure. The health risk perception can offset risk preference effects on women breeders’ environmental exposure by 15.15%. Moreover, considering the heterogeneity of the breeding scale, it is found that the impact of risk preference and health risk perception on women breeders’ environmental exposure is an inverted U-shaped relationship, i.e., the results are at the turning stage when the breeding scale is 31–40 heads. Based on the empirical findings, the study offers guidelines for policymakers to enhance awareness amongst women breeders regarding health and pollution and encourage them to opt for environment-friendly breeding. Moreover, this research also has substantial guiding significance for related research on environmental exposure of rural women in other developing countries.
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The effects of COVID-19 litter on animal life
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During the COVID-19 pandemic, Personal Protective Equipment (PPE) is massively used, resulting in a new wave of litter: protective face masks and gloves Here we present the first case of a fish entrapped in a medical glove, encountered during a canal clean-up in Leiden, The Netherlands We also report the first cases of birds using medical face masks as nesting material, which were also found in the Dutch canals To place these new findings in context, we collected online reported interactions of animals with PPE litter, since the start of the pandemic This resulted in the first overview of cases of entanglement, entrapment and ingestion of COVID-19 litter by animals and the use of it as nesting material We signal COVID-19 litter as a new threat to animal life as the materials designed to keep us safe are actually harming animals around us To understand the full scale of this problem, we welcome anyone to contribute to our overview by submitting their observations online at www covidlitter com To further prevent PPE litter, it is recommended that, when possible, reusable alternatives are used [ABSTRACT FROM AUTHOR] Copyright of Animal Biology is the property of Brill Academic Publishers and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission However, users may print, download, or email articles for individual use This abstract may be abridged No warranty is given about the accuracy of the copy Users should refer to the original published version of the material for the full abstract (Copyright applies to all Abstracts )
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The use of photogrammetric fossil models in palaeontology education
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Photogrammetry allows overlapping photographs of fossils to be taken and converted into photo-realistic three-dimensional (3-D) digital models. These models offer potential advantages in teaching palaeontology: they are cheap to produce, can be easily shared and allow the study of rare and delicate specimens. Here I describe approaches for using photogrammetric models in the teaching and learning of palaeontology. Little is known about how students perceive these models and whether they find them valuable in their learning. To address this, first-year university students taught using both fossil specimens and digital models were surveyed about their experience through an anonymous online survey. Most students found that the digital models were easy to use, helped them understand anatomy and were more useful than studying photographs. However, most did not see the models as a substitute for studying real fossils and felt they could learn more from physical models. Digital models are a useful addition to palaeontological education that can supplement real fossils and allow palaeontological education to take place in circumstances where handling of specimens is not possible.
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Trinidadian guppies use a social heuristic that can support cooperation among non-kin
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Cooperation among non-kin is well documented in humans and widespread in non-human animals, but explaining the occurrence of cooperation in the absence of inclusive fitness benefits has proven a significant challenge. Current theoretical explanations converge on a single point: cooperators can prevail when they cluster in social space. However, we know very little about the real-world mechanisms that drive such clustering, particularly in systems where cognitive limitations make it unlikely that mechanisms such as score keeping and reputation are at play. Here, we show that Trinidadian guppies (Poecilia reticulata) use a 'walk away' strategy, a simple social heuristic by which assortment by cooperativeness can come about among mobile agents. Guppies cooperate during predator inspection and we found that when experiencing defection in this context, individuals prefer to move to a new social environment, despite having no prior information about this new social group. Our results provide evidence in non-human animals that individuals use a simple social partner updating strategy in response to defection, supporting theoretical work applying heuristics to understanding the proximate mechanisms underpinning the evolution of cooperation among non-kin.
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The impact of silver sulfide nanoparticles and silver ions in soil microbiome
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The use of biosolids as fertilizers in agriculture can lead to the exposure of soil biota to sulfidised silver nanoparticles (Ag2S NPs), generated during the wastewater treatment procedures. Considering the crucial role of microorganisms on soil functions, we aimed to study the effects of 10 mg kg-1 soil of Ag2S NPs or AgNO3 on the soil microbiome, using an indoor mesocosm. After 28 days of exposure, Ag2S NPs induced a significant change in the soil microbiome structure, at class, genera and OTU levels. For instance, a significantly higher abundance of Chitinophagia, known for its lignocellulose-degrading activity, was observed in Ag2S NPs-treated soil toward the control. Nevertheless, stronger effects were observed in AgNO3-treated soil, over time, due to its higher silver dissolution rate in porewater. Additionally, only the AgNO3-treated soil stimulates the abundance of ammonia-oxidizing (AOB; amoA gene) and nitrite-oxidizing (NOB; nxrB gene) bacteria, which are involved in the nitrification process. Distinct variants of amoA and nxrB genes emerged in silver-treated soils, suggesting a potential succession of AOB and NOB with different degree of silver-tolerance. Our study highlights the latter effects of Ag2S NPs on the soil microbiome composition, while AgNO3 exerted a stronger effect in both composition and functional parameters.
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Business prospects of pasteurized milk diversification in the new normal era post Covid-19 through PPUPIK
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The development of dairy products such as pasteurized milk and its diversification is very much needed to fulfil the consumption of animal protein as an intake in increasing the fulfilment of community nutrition. A collaboration of livestock products, especially dairy products and the edu-tourism method, is a method of education through tourism, which is an interactive teaching method of utilizing the environment, location, objects, and animal food products that can be directly enjoyed by learners. Faculty of Animal Science Hasanuddin University has locations and objects that allow students or communities to learn about the world of animal science and its products. A survey of the business prospects for dairy product diversification in the face of the new normal post-Covid-19 and associated with educational edu-agrotourism was studied to provide an overview of the Campus Intellectual Product Unit Development Program (PPUPIK) as a form of campus empowerment for community education. The survey results indicate that dairy products and their diversification to be developed as a source of animal protein, which can be used as food to prepare during visits to animal farm edu-tourism objects, especially in the new normal post-Covid-19.
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Understanding the impacts on land use through GHG-water-land-biodiversity nexus: The case of oil palm plantations in Thailand
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The promotion of biodiesel from palm oil for on-road transportation during the past decade has led to the expansion of oil palm plantations, including in Thailand. Hence, it is necessary to study the effects of land use for oil palm and the linkage between each impact for a holistic understanding. Besides, the consideration of various impact aspects in terms of a nexus is necessary for suggesting appropriate practices or zoning, because a single impact evaluation may not be comprehensive. Therefore, this study assessed the land use impacts from oil palm plantations in the five regions of Thailand. The land use impacts studied were greenhouse gas emissions, water scarcity, soil quality, and biodiversity. The assessment indicated the southern region to be the most suitable for further expansion of oil palm plantations, which is consistent with the government recommendation. However, if the expansion of oil palm in other regions is necessary, the central region is recommended because of available irrigation supply and better soil fertility compared to other regions. This study found that the land use impacts resulted from unsuitable management of oil palm plantations in the past. The increase of greenhouse gas emissions was mainly due to the excessive use of chemical fertilizers for soil quality improvement and water pumping from irrigation water consumption. Meanwhile, the deficiency of water availability led to the degradation of biodiversity and ecosystems. To decrease the land use impacts in the long run, suitable practice is important for sustainable oil palm plantations.
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Younger generations are more interested than older generations in having non-domesticated animals as pets
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The trade and private ownership of non-domesticated animals has detrimental effects on individual animals and their wild populations. Therefore, there is a need to understand the conditions that motivate and dissuade interest in non-domesticated pet ownership. Past research has demonstrated that the way in which non-domesticated animals are portrayed in images influences the public’s perception that they are suitable as pets. We conducted an online survey of people residing in the United States to investigate how viewing images that could be realistically captured in the zoo and broader tourism industries impact the degree to which people report interest in having that animal as a pet. We focused on two species, reticulated pythons (Malayopython reticulatus) and two-toed sloths (Choloepus hoffmanni), and presented each species in six different visual contexts. After viewing an image, respondents reported interest in pet ownership on a four-point Likert scale. Each species was studied separately in a between-subjects design and results were analyzed using ordinal logistic regression models. Thirty-nine percent of respondents reported interest in sloth pet ownership, and 21% reported interest in python pet ownership. However, contrary to our hypotheses, we found that viewing these species in different visual contexts did not significantly affect survey respondents’ reported interest in having either species as a pet. Generation was a significant predictor of interest in both sloth and python pet ownership, with younger generations reporting more interest in having these species as pets. Male respondents reported more interest in python pet ownership, whereas there were no significant differences between genders regarding interest in sloth ownership. We consider how modern media exposure to animals in unnatural contexts may relate to the generational effect and discuss priorities for future research to better understand the development of individual interests in non-domesticated pet ownership.
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Cascading effects caused by fenoxycarb in freshwater systems dominated by Daphnia carinata and Dolerocypris sinensis.
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To evaluate the aquatic hazards of the insect juvenile hormone analogue fenoxycarb, a single application (0, 48.8, 156.3, 500, 1600, and 5120 μg/L) of it was done in indoor freshwater systems dominated by Daphnia carinata (daphnid) and Dolerocypris sinensis (ostracoda). The responses of zooplankton (counted by abundance and the activity and immuno-reactive content of free N-Acetyl-β-D-glucosaminidase (NAGase)), phytoplankton (counted by chlorophyll and phycocyanin), planktonic bacteria and fungi, and some water quality parameters were investigated in a period of 35 d. Results of the study showed that the ostracoda was more sensitive than daphnid, with time-weighted average (TWA)-based no observed effect concentrations (NOECs) to be 8.45 and 12.66 μg/L in systems without humic acid addition (HA-) and to be 6.37 and 9.54 μg/L in systems with humic acid addition (HA+). The duration of treatment-related effects in the ostracoda population was longer than the daphnid population (21 vs. 14 days). Besides, the data analysis indicated that the toxicity of fenoxycarb was significantly enhanced in the HA+ systems. Owing to the reduced grazing pressure, the concentrations of chlorophyll and phycocyanin increased in the two highest treatments. The increase in photosynthesis along with a reduced animal excretion led to an increase in pH and a decrease in nutrient contents. These changes seemed to have an effect on the microbial communities. For example, the abundances of some opportunistic pathogens of aquatic animals (e.g. Aeromonas and Cladosporium) and organic-pollutant-degrading microorganisms (e.g. Ancylobacter and Azospirillum) increased significantly in microbial communities, but the abundances of Pedobacter, Candidatus Planktoluna, and Rhodobacter (photosynthetic bacteria) markedly decreased. This study provides useful information to understand the ecotoxicological impacts of fenoxycarb at the population and community levels while integrating the effects of HA on toxicity.
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Multi-Trait Multi-Environment Genomic Prediction for End-Use Quality Traits in Winter Wheat.
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Soft white wheat is a wheat class used in foreign and domestic markets to make various end products requiring specific quality attributes. Due to associated cost, time, and amount of seed needed, phenotyping for the end-use quality trait is delayed until later generations. Previously, we explored the potential of using genomic selection (GS) for selecting superior genotypes earlier in the breeding program. Breeders typically measure multiple traits across various locations, and it opens up the avenue for exploring multi-trait-based GS models. This study's main objective was to explore the potential of using multi-trait GS models for predicting seven different end-use quality traits using cross-validation, independent prediction, and across-location predictions in a wheat breeding program. The population used consisted of 666 soft white wheat genotypes planted for 5 years at two locations in Washington, United States. We optimized and compared the performances of four uni-trait- and multi-trait-based GS models, namely, Bayes B, genomic best linear unbiased prediction (GBLUP), multilayer perceptron (MLP), and random forests. The prediction accuracies for multi-trait GS models were 5.5 and 7.9% superior to uni-trait models for the within-environment and across-location predictions. Multi-trait machine and deep learning models performed superior to GBLUP and Bayes B for across-location predictions, but their advantages diminished when the genotype by environment component was included in the model. The highest improvement in prediction accuracy, that is, 35% was obtained for flour protein content with the multi-trait MLP model. This study showed the potential of using multi-trait-based GS models to enhance prediction accuracy by using information from previously phenotyped traits. It would assist in speeding up the breeding cycle time in a cost-friendly manner.
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Playing in the Mud: Benthic Foraminiferal Communities—Dynamic Environmental Impact Indicators
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We show the applicability of the use of foraminifera communities dynamics correlated with abiotic parameters to provide data in environmental quality and coastal management plans. In this sense, we pinpoint sites most subjected to pollution and contamination and we identify differentiate effluents even when salinity and temperature values form gradient. Foraminiferal assemblages show increase in abundance of tolerant species to specific abiotic parameters. Density and diversity negatively correlated with heavy metal and PAHs. Increase in percentages of deformed or abnormal organisms and reduced size of the organism when they are exposed to heavy pollution mainly due to Hg, PAHs, and PCBs. It was observed that tolerant opportunistic species (Ammonia tepida and Buliminella elegantissima) benefit directly from organic contamination increasing their relative abundance. The other type of benefit may be indirect, as has occurred for Elphidium spp., which greatly increases its dominance due to the absence of other species that have had their shells dissolved first, resulting primarily from the impact of the oil spills. On the sedimentary and coral reef areas, Amphistegina gibbosa tests were not found at sites where reefs are walked upon. The presence of hard substrates and coarse sediment, rather than water depth, seems to be controlling the distribution of the tests.The results to date reaffirm the use of foraminiferal species in studies of oil spills, contamination by sewage, and industrial pollution even where the dissolution of carbonate is active due to low pH values. We then conclude that pollution or contamination of an environment overlaps the “natural” zonation and gradient of environmental factors, therefore limiting the establishment of species that are strategists and not opportunists.
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Germaphobia! Does Our Relationship With and Knowledge of Biodiversity Affect Our Attitudes Toward Microbes?
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Germaphobia – a pathological aversion to microorganisms – could be contributing to an explosion in human immune-related disorders via mass sterilization of surfaces and reduced exposure to biodiversity. Loss of biodiversity and people’s weaker connection to nature, along with poor microbial literacy may be augmenting the negative consequences of germaphobia on ecosystem health. In this study, we created an online questionnaire to acquire data on attitudes toward, and knowledge of microbes. We collected data on nature connectedness and interactions with nature and explored the relationships between these variables. Although the study had an international reach (n = 1,184), the majority of responses came from England, United Kingdom (n = 993). We found a significant association between attitudes toward microbes and both duration and frequency of visits to natural environments. A higher frequency of visits to nature per week, and a longer duration spent in nature per visit, was significantly associated with positive attitudes toward microbes. We found no association between nature connectedness and attitudes toward microbes. We found a significant relationship between knowledge of “lesser known” microbial groups (e.g., identifying that fungi, algae, protozoa, and archaea are microbes) and positive attitudes toward microbes. However, we also found that people who identified viruses as being microbes expressed less positive views of microbes overall–this could potentially be attributed to a “COVID-19 effect.” Our results suggest that basic microbial literacy and nature engagement may be important in reducing/preventing germaphobia-associated attitudes. The results also suggest that a virus-centric phenomenon (e.g., COVID-19) could increase broader germaphobia-associated attitudes. As the rise of immune-related disorders and mental health conditions have been linked to germaphobia, reduced biodiversity, and non-targeted sterilization, our findings point to a feasible strategy to potentially help ameliorate these negative consequences. Further research is needed, but greater emphasis on microbial literacy and promoting time spent in nature could potentially be useful in promoting resilience in human health and more positive/constructive attitudes toward the foundations of our ecosystems—the microorganisms.
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Agri-nutrition research: Revisiting the contribution of maize and wheat to human nutrition and health
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Research linking agriculture and nutrition has evolved since the mid-20th century. The current focus is on child-stunting, dietary diversity and ‘nutrient-rich’ foods in recognition of the growing burdens of malnutrition and non-communicable diseases. This article concerns the global dietary and health contribution of major cereals, specifically maize and wheat, which are often considered not to be ‘nutrient-rich’ foods. Nevertheless, these cereals are major sources of dietary energy, of essential proteins and micronutrients, and diverse non-nutrient bioactive food components. Research on bioactives, and dietary fibre in particular, is somewhat ‘siloed’, with little attention paid by the agri-nutrition research community to the role of cereal bioactives in healthy diets, and the adverse health effects often arising through processing and manufacturing of cereals-based food products. We argue that the research agenda should embrace the whole nutritional contribution of the multiple dietary components of cereals towards addressing the triple burden of undernutrition, micronutrient malnutrition, overweight/obesity and non-communicable diseases. Agri-nutrition and development communities need to adopt a multidisciplinary and food systems research approach from farm to metabolism. Agriculture researchers should collaborate with other food systems stakeholders on nutrition-related challenges in cereal production, processing and manufacturing, and food waste and losses. Cereal and food scientists should also collaborate with social scientists to better understand the impacts on diets of the political economy of the food industry, and the diverse factors which influence local and global dietary transitions, consumer behavioural choices, dietary change, and the assessment and acceptance of novel and nutritious cereal-based products.
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Effects of corticosterone treatment and wound healing on reproductive traits of American bullfrogs
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During reproductive season, calling anuran males display high testosterone (T) and episodically high corticosterone (CORT) plasma levels, which are positively associated with higher calling rates and immunocompetence. However, exposure to constant stress stimuli can result in chronically elevated CORT levels, possibly leading to inhibition of reproductive and immune activity. Reproduction and immune responses are energetically expensive, so when an animal is immunologically challenged, a tradeoff might be expressed, with CORT potentially mediating it. Our aim was to test how episodic and chronic CORT treatments, alongside wound healing, would affect reproduction in American bullfrog males (Lithobates catesbeianus). Forty animals were divided in four groups: Episodic CORT (daily transdermic application of CORT), placebo (daily transdermic application of sesame oil), chronic CORT (subcutaneous CORT silastic implants), and sham control (subcutaneous empty silastic implants). One week after treatments began, animals were punctured in the leg with a biopsy needle and the wound was photographed after 45 days to determine wound healing status (WS). Blood samples were collected throughout the experiment to measure CORT and T plasma levels. After animal euthanasia, testes were dissected, fixed, and analyzed histologically to determine spermatogenic activity (germinative cyst [GmC] morphometrics). As expected, the episodic CORT treatment had no effect on T plasma levels or spermatogenic activity. On the other hand, chronic CORT treatment reduced GmC morphometric traits, indicating suppression of reproduction, although T levels were not altered. In addition, animals from sham control and chronic CORT treatments with higher T levels presented higher WS, which indicates an immune-enhancing T effect.
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Fire Suppression Agents Combined with Gasoline in Aquatic Ecosystems: A Mixture Approach.
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Fire Suppression Agents (FSA) are recommended for extinguishing fires by flammable liquids and frequently end in water bodies, combined with the fuels. There is a lack of toxicity information of these commercial formulations and the effects of mixtures of FSA and fuels. The aim of the present study was to evaluate the toxic effects of different FSA, Gasoline Water Soluble Fraction (GWSF) and mixtures of each FSA and GWSF. Individual tests were performed with Daphnia similis and Artemia sp., the most toxic FSA to D. similis and Artemia sp. were F-500®, Cold Fire®, Agefoam®, and Kidde Sintex® 1%; the GWSF was the less toxic. The concentration addition (CA) model was used to predict the mixture effects and evaluate Synergism/Antagonism, Dose Ratio-dependent (DR) and Dose Level-dependent (DL). Cold Fire® with GWSF showed DL deviation to D. similis, marked mainly by synergism, for Artemia sp. DR pattern was predicted, with synergistic response mainly by Cold Fire®. Agefoam® and GWSF behaved additively for D. similis and DR for Artemia sp., with synergism being caused by Agefoam®. Kidde Sintex® 1% with GWSF were DR for both organisms, with Kidde Sintex® 1% being responsible for synergism. Our results showed that some mixtures of FSA and GWSF may cause toxicity to aquatic organisms, posing risk in a real environmental scenario, such as a major fire combat. This article is protected by copyright. All rights reserved.
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Environmental Factors Affecting Diversity, Structure, and Temporal Variation of Airborne Fungal Communities in a Research and Teaching Building of Tianjin University, China
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Airborne fungi are widely distributed in the environment and may have adverse effects on human health. A 12-month survey on the diversity and concentration of culturable airborne fungi was carried out in a research and teaching building of Tianjin University. Indoor and outdoor environments were analyzed using an HAS-100B air sampler. A total of 667 fungal strains, belonging to 160 species and 73 genera were isolated and identified based on morphological and molecular analysis. The most abundant fungal genera were Alternaria (38.57%), Cladosporium (21.49%), and Aspergillus (5.34%), while the most frequently appearing species was A. alternata (21%), followed by A. tenuissima (12.4%), and C. cladosporioides (9.3%). The concentration of fungi in different environments ranged from 0 to 150 CFU/m(3) and was significantly higher outdoor than indoor. Temperature and sampling month were significant factors influencing the whole building fungal community, while relative humidity and wind speed were highly correlated with fungal composition outdoor. Variations in the relative abundance of major airborne fungal taxa at different heights above-ground could lead to different community structures at different floors. Our results may provide valuable information for air quality monitoring and microbial pollution control in university building environments.
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Beliefs and Attitudes of British Residents about the Welfare of Fur-Farmed Species and the Import and Sale of Fur Products in the UK
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SIMPLE SUMMARY: Fur farming has become increasingly controversial in the western world. Fur-farmed species such as mink contracting and transmitting COVID-19 have put a further spotlight on the industry. The United Kingdom (UK) and other nations have banned fur farming due to welfare concerns. Despite this, due to European Union (EU) membership, the UK has continued to import and sell fur from two million animals each year. The UK left the EU in 2020 and the British government is now considering a ban on the import and sale of fur. This paper reviews public polls on British attitudes to the fur industry conducted between 1997 and 2021. The polls reveal consistently high majority opposition to the fur industry. The paper then reports the results of a new questionnaire to explore in further depth the views of UK residents on the fur industry and attitudes to a ban. A large majority (86%) believed fur-farmed animals do not experience a good life. A similar majority (83%) believed it was unacceptable for the UK government to ban fur farming and continue to import and sell fur from producers overseas. Over three quarters (78%) supported a legal ban on the import and sale of fur in the UK. ABSTRACT: Around 100 million animals are killed annually for the global fur trade, with 85% reared on fur farms and 15% trapped in the wild. Fur farming is banned across the United Kingdom (UK) under the Fur Farming (Prohibition) Act 2000 in England and Wales and parallel legislation in Scotland and Northern Ireland. Despite the farming bans, the import and sale of fur products to the UK have continued, largely due to European Union (EU) membership. The UK left the EU in 2020 and the British government is exploring a potential ban on the import and sale of fur post-Brexit. This paper reviews public surveys on attitudes to fur farming in the UK from 1997 to 2021. It then reports the results of an online questionnaire to investigate in greater depth the beliefs of UK residents (n = 326) about the welfare of animals used in fur production, knowledge of the legal context of the fur trade and attitudes toward a ban on the import and sale of fur in the UK. A large majority (86%) of respondents believed that fur-farmed animals do not experience a good life. Over four-fifths (83%) disagreed that it is morally acceptable for the UK government to ban fur farming and yet continue to import and sell fur from producers overseas, with over three-quarters (78%) supporting a legal ban on the import and sale of fur in the UK.
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Effects of climate and environmental variance on the performance of a novel peatland-based integrated multi-trophic aquaculture (IMTA) system: Implications and opportunities for advancing research and disruptive innovation post COVID-19 era
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Advancing wet peatland 'paludiculture' innovation present enormous potential to sustain carbon-cycles, reduce greenhouse-gas (GHG) gas emissions and to transition communities to low-carbon economies; however, there is limited scientific-evidence to support and enable direct commercial viability of eco-friendly products and services. This timely study reports on a novel, paludiculture-based, integrated-multi-trophic-aquaculture (IMTA) system for sustainable food production in the Irish midlands. This freshwater IMTA process relies on a naturally occurring ecosystem of microalgae, bacteria and duckweed in ponds for managing waste and water quality that is powered by wind turbines; however, as it is recirculating, it does not rely upon end-of-pipe solutions and does not discharge effluent to receiving waters. This constitutes the first report on the effects of extreme weather events on the performance of this IMTA system that produces European perch (Perca fluviatilis), rainbow trout (Oncorhynchus mykiis) during Spring 2020. Sampling coincided with lockdown periods of worker mobility restriction due to COVID-19 pandemic. Observations revealed that the frequency and intensity of storms generated high levels of rainfall that disrupted the algal and bacterial ecosystem in the IMTA leading to the emergence and predominance of toxic cyanobacteria that caused fish mortality. There is a pressing need for international agreement on standardized set of environmental indicators to advance paludiculture innovation that addresses climate-change and sustainability. This study describes important technical parameters for advancing freshwater aquaculture (IMTA), which can be future refined using real-time monitoring-tools at farm level to inform management decision-making based on evaluating environmental indicators and weather data. The relevance of these findings to informing global sustaining and disruptive research and innovation in paludiculture is presented, along with alignment with UN Sustainable Development goals. This study also addresses global challenges and opportunities highlighting a commensurate need for international agreement on resilient indicators encompassing linked ecological, societal, cultural, economic and cultural domains.
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PHYLOGENETIC STUDY OF HEDYOTIS (RUBIACEAE) IN NORTH AMERICA
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Lewis, Walter H. (Stephen F. Austin State Coll., Nacogdoches, Texas.) Phylogenetic study of Hedyotis (Rubiaceae) in North America. Amer. Jour. Bot. 49(8): 855–865. Illus. 1962.—Chromosome numbers for 39 taxa of Hedyotis separable into the subgenera Edrisia (Raf.) Lewis and Oldenlandia (L.) T. & G. are reported. The occurrence of basic numbers of x = 6, 7, 8, 9(10), 11, and 13, including infraspecific aneuploidy in H. nigricans (Lam.) Fosb., illustrates the importance of aneuploidy in the speciation of Hedyotis in contrast to most rubiaceous genera. In the North American subg. Edrisia, 25 species are ranked according to primitive and advanced expressions for 13 characters. It is postulated on the basis of these, ecologic, geographic, and chromosomal data that the x = 11 group gave rise to the x = 13 line by the gain of chromosomes and to the x = (10)9, 8, and 7 groups by reduction. Those species with a basic number of 6 are thought to have an Asian origin. Although aneuploidy has been dominant in the evolution of subg. Edrisia, only 12% of the species are polyploids. The development of polyploid races in 3 species, H. caerulea (L.) Hook., H. polypremoides (Gray) Shinners, and H. purpurea (L.) T. & G., however, suggests a greater role of polyploidy in the current evolution of Hedyotis.
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Health risk assessment of heavy metal(loid)s in park soils of the largest megacity in China by using Monte Carlo simulation coupled with Positive matrix factorization model
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Urban Parks are important places for residents to engage in outdoor activities, and whether heavy metal(loid)s (HMs) in park soils are harmful to human health has aroused people's concern. A total of 204 topsoil samples containing nine HMs were collected from 78 urban parks of Shanghai in China, and used to assess the health risks caused by HMs in soils. The results revealed that the Hg, Cd and Pb were the main enriched pollutants and posed higher ecological risks than the other HMs. Four HM sources (including natural sources, agricultural activities, industrial production and traffic emissions) were identified by combining the Positive matrix factorization model and Correlation analysis, with the contribution rate of 48.24%, 7.03%, 13.04% and 31.69%, respectively. The assessment of Probabilistic health risks indicated that the Non-carcinogenic risks for all populations were negligible. However, the Total carcinogenic risk cannot be negligible and children were more susceptible than adults. The assessment results of source-oriented health risks showed that industrial production and traffic emissions were estimated to be the most important anthropogenic sources of health risks for all populations. Our results provide scientific support needed for the prevention and control of HM pollution in urban parks.
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Investigating temporal and spatial variation of eDNA in a nearshore rocky reef environment
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Environmental DNA (eDNA) is increasingly used to measure biodiversity of marine ecosystems. However, key aspects of spatial and temporal dynamics of eDNA remain unknown. Particularly, it is unclear how long eDNA signals persist locally in dynamic marine environments, since degradation rates have predominantly been quantified through mesocosm studies. To determine in situ eDNA residence times, we introduced an eDNA signal from a non-native fish into a Southern California rocky reef ecosystem, and then measured changes in both introduced and background eDNA signals over 96 hours. Foreign eDNA signal could no longer be detected 7.5 hours after introduction, far exceeding disappearance rates quantified in laboratory studies. In addition, native vertebrate eDNA signals varied greatly over the 96 hours of observation, but time of day and tidal direction did not drive this variation in community structure. Species accumulation curves showed that standard sampling protocols using 3 replicate 1 L sea water samples were insufficient to capture full diversity of local marine vertebrates, capturing only 76% of all taxa. Despite this limitation, a single eDNA sample captured greater vertbrate diversity than 18 SCUBA based underwater visual transect surveys conducted at a nearby site. There was no significant difference in species richness between temporal replicates and spatial replicates, suggesting a space for time substitution may be effective for fully capturing the diversity of local marine vertebrate communities in nearshore rocky reef environments. This result is particularly important in designing eDNA metabarcoding sampling protocols to capture local marine species diversity.
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Leveraging a High-Throughput Screening Method to Identify Mechanisms of Individual Susceptibility Differences in a Genetically Diverse Zebrafish Model
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Understanding the mechanisms behind chemical susceptibility differences is key to protecting sensitive populations. However, elucidating gene-environment interactions (GxE) presents a daunting challenge. While mammalian models have proven useful, problems with scalability to an enormous chemical exposome and clinical translation faced by all models remain; therefore, alternatives are needed. Zebrafish (Danio rerio) have emerged as an excellent model for investigating GxE. This study used a combined bioinformatic and experimental approach to probe the mechanisms underlying chemical susceptibility differences in a genetically diverse zebrafish population. Starting from high-throughput screening (HTS) data, a genome-wide association study (GWAS) using embryonic fish exposed to 0.6 μM Abamectin revealed significantly different effects between individuals. A hypervariable region with two distinct alleles–one with G at the SNP locus (GG) and one with a T and the 16 bp deletion (TT)–associated with differential susceptibility was found. Sensitive fish had significantly lower sox7 expression. Due to their location and the observed expression differences, we hypothesized that these sequences differentially regulate sox7. A luciferase reporter gene assay was used to test if these sequences, alone, could lead to expression differences. The TT allele showed significantly lower expression than the GG allele in MCF-7 cells. To better understand the mechanism behind these expression differences, predicted transcription factor binding differences between individuals were compared in silico, and several putative binding differences were identified. EMSA was used to test for binding differences in whole embryo protein lysate to investigate these TF binding predictions. We confirmed that the GG sequence is bound to protein in zebrafish. Through a competition EMSA using an untagged oligo titration, we confirmed that the GG oligo had a higher binding affinity than the TT oligo, explaining the observed expression differences. This study identified differential susceptibility to chemical exposure in a genetically diverse population, then identified a plausible mechanism behind those differences from a genetic to molecular level. Thus, an HTS-compatible zebrafish model is valuable and adaptable in identifying GxE mechanisms behind susceptibility differences to chemical exposure.
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A slow rainy season onset is a reliable harbinger of drought in most food insecure regions in Sub-Saharan Africa
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Since 2015, Sub-Saharan Africa (SSA) has experienced an unprecedented rise in acute food insecurity (AFI), and current projections for the year 2020 indicate that more than 100 million Africans are estimated to receive emergency food assistance. Climate-driven drought is one of the main contributing factors to AFI, and timely and appropriate actions can be taken to mitigate impacts of AFI on lives and livelihoods through early warning systems. To support this goal, we use observations of peak Normalized Difference Vegetation Index (NDVI) as an indicator of seasonal drought conditions following a rainy season to show that delays in the onset of the rainy season (onset date) can be an effective early indicator of seasonal drought conditions. The core of this study is an evaluation of the relationship of the onset dates and peak NDVI, stratified by AFI risks, calculated using AFI reports by the United States Agency of International Development (USAID)-funded Famine Early Warning Systems Network (FEWS NET). Several parts of SSA, mostly located in East Africa (EA), reported the "Crisis" phase of AFI-requiring emergency food assistance-at least one-third of the time between April 2011 to present. The results show that the onset date can effectively explain much of the interannual variability in peak NDVI in the regions with the highest AFI risk level, particularly in EA where the median of correlation (across all the Administrative Unit 2) varies between -0.42 to -0.68. In general, an onset date delay of at least 1 dekad (10 days) increases the likelihood of seasonal drought conditions. In the regions with highest risks of AFI, an onset delay of just 1 dekad doubles the chance of the standardized anomaly of peak NDVI being below -1, making a -1 anomaly the most probable outcome. In those regions, a 2-dekads delay in the onset date is associated with a very high probability (50%) of seasonal drought conditions (-1 standardized anomaly of NDVI). Finally, a multivariate regression analysis between standardized anomaly and onset date anomaly further substantiates the negative impacts of delay in onset date on NDVI anomaly. This relationship is statistically significant over the SSA as a whole, particularly in the EA region. These results imply that the onset date can be used as an additional critical tool to provide alerts of seasonal drought development in the most food-insecure regions of SSA. Early warning systems using onset date as a tool can help trigger effective mid-season responses to save human lives, livestock, and livelihoods, and, therefore, mitigate the adverse impacts of drought hazards.
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Food Safety Assessment: Overview of Metrological Issues and Regulatory Aspects in the European Union
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The safety of the food we consume has a direct impact on individual and population health and affects the economic growth of the region where food safety is practised and enhanced. The central goal of the European Commission’s Food Safety policy is to ensure a high level of protection of human health covering the whole supply chain. In recent years, great attention has been paid to food testing and the application of metrological tools to support food safety. The global food market and national and international food safety regulations have created a huge demand for the measurement traceability and comparability of analytical results that are independent of time or space boundaries. This review provides an overview of the European food safety policy and regulation, with a focus on the measurement-related elements of the European Union (EU) food law. It also highlights how the application of analytical techniques, with particular reference to separation approaches, and metrological tools can ensure the control of certain contaminants that nowadays represent the main challenges for food safety (e.g., mycotoxins, nanoparticles, emerging and process contaminants). METROFOOD-RI-Infrastructure for promoting metrology in food and nutrition is therefore described in this context. This European research infrastructure has been developed and is being implemented in the frame of the European Strategy Forum on Research Infrastructures (ESFRI) to support metrology in food and nutrition and establish a strategy allowing reliable and comparable analytical measurements in food across the entire process line, from primary producers to consumers, and making data findable, accessible, interoperable, and reusable (FAIR).
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Endurance and sprint training affect immune function differently in green anole lizards (Anolis carolinensis)
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Limited resources must be partitioned among traits that enhance fitness. Although survival-related traits often trade off with reproduction, survival-related traits themselves may trade off with each other under energy limitation. Whole-organism performance and the immune system both enhance survival, yet are costly, but it is unclear how the two might trade off with each other under energy-limited conditions. Resources may be allocated to very different types of performance (e.g., aerobic endurance versus anaerobic sprinting) just as they may be allocated to different components of the immune system (e.g., innate versus acquired) to maximize survival. We forced allocation to different performance traits in green anole lizards (Anolis carolinensis), using specialized exercise training, to determine how different components of the immune system would be impacted by shifts in energy use. We measured immunocompetence in endurance trained, sprint trained, and untrained control lizards with the swelling response to phytohemagglutinin (cell-mediated), antibody response to sheep red blood cells (acquired humoral), and wound healing (integrated). Endurance-trained lizards had reduced cell-mediated immunity, whereas sprint-trained lizards had reduced rates of wound healing. The acquired immune response was not affected by either type of training. Because each immune measure responded differently to the different types of training, our results do not support the hypothesis that simple energy limitation determines overall investment in immunity. Instead, different components of the immune system appear to be affected in ways specific to how energy is invested in performance.
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Honey Bees (Hymenoptera: Apidae) Decrease Foraging But Not Recruitment After Neonicotinoid Exposure
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Honey bees (Linnaeus, Hymenoptera: Apidae) are widely used as commercial pollinators and commonly forage in agricultural and urban landscapes containing neonicotinoid-treated plants. Previous research has demonstrated that honey bees display adverse behavioral and cognitive effects after treatment with sublethal doses of neonicotinoids. In laboratory studies, honey bees simultaneously increase their proportional intake of neonicotinoid-treated solutions and decrease their total solution consumption to some concentrations of certain neonicotinoids. These findings suggest that neonicotinoids might elicit a suboptimal response in honey bees, in which they forage preferentially on foods containing pesticides, effectively increasing their exposure, while also decreasing their total food intake; however, behavioral responses in semifield and field conditions are less understood. Here we conducted a feeder experiment with freely flying bees to determine the effects of a sublethal, field-realistic concentration of imidacloprid (IMD) on the foraging and recruitment behaviors of honey bees visiting either a control feeder containing a sucrose solution or a treatment feeder containing the same sucrose solution with IMD. We report that IMD-treated honey bees foraged less frequently (-28%) and persistently (-66%) than control foragers. Recruitment behaviors (dance frequency and dance propensity) also decreased with IMD, but nonsignificantly. Our results suggest that neonicotinoids inhibit honey bee foraging, which could potentially decrease food intake and adversely affect colony health.
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Undesirable evolutionary consequences of trophy hunting.
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Phenotype-based selective harvests, including trophy hunting, can have important implications for sustainable wildlife management if they target heritable traits. Here we show that in an evolutionary response to sport hunting of bighorn trophy rams (Ovis canadensis) body weight and horn size have declined significantly over time. We used quantitative genetic analyses, based on a partly genetically reconstructed pedigree from a 30-year study of a wild population in which trophy hunting targeted rams with rapidly growing horns, to explore the evolutionary response to hunter selection on ram weight and horn size. Both traits were highly heritable, and trophy-harvested rams were of significantly higher genetic 'breeding value' for weight and horn size than rams that were not harvested. Rams of high breeding value were also shot at an early age, and thus did not achieve high reproductive success. Declines in mean breeding values for weight and horn size therefore occurred in response to unrestricted trophy hunting, resulting in the production of smaller-horned, lighter rams, and fewer trophies.
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ECOLOGICAL DIVERSITY IN NORTH AMERICAN PINES
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Ecological groups were identified from 34 North American species of pine using multivariate analysis of 18 ecological traits. Five adaptive modes are described: 1) fire‐resistant species that are large, thick‐barked, and have large cones and long needles; 2) tall, fast‐growing mesophytic species with moderately high shade tolerance; 3) stress‐tolerant species with animal‐dispersed seeds, occurring mainly on cold or dry sites where fire is infrequent; 4) fire‐resilient species that are precocious reproducers with small seeds, often in serotinous cones; and 5) species of southern mesic sites with fast growth, strong, heavy wood and short persistence of needles. Intermediates between these modes exist. Convergent evolution has occasionally occurred, as shown by high ecological similarity of species in different taxonomic sections within Pinus. However, the analogies between species are imperfect, suggesting the importance of constraint by shared ancestry and divergence produced by a diversity of environments.
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Enhanced Energy Recovery from Food Waste by Co-Production of Bioethanol and Biomethane Process
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The primary objective of this research is to study ways to increase the potential of energy production from food waste by co-production of bioethanol and biomethane. In the first step, the food waste was hydrolysed with an enzyme at different concentrations. By increasing the concentration of enzyme, the amount of reducing sugar produced increased, reaching a maximum amount of 0.49 g/g food waste. After 120 h of fermentation with Saccharomyces cerevisiae, nearly all reducing sugars in the hydrolysate were converted to ethanol, yielding 0.43–0.50 g ethanol/g reducing sugar, or 84.3–99.6% of theoretical yield. The solid residue from fermentation was subsequently subjected to anaerobic digestion, allowing the production of biomethane, which reached a maximum yield of 264.53 ± 2.3 mL/g VS. This results in a gross energy output of 9.57 GJ, which is considered a nearly 58% increase in total energy obtained, compared to ethanol production alone. This study shows that food waste is a raw material with high energy production potential that could be further developed into a promising energy source. Not only does this benefit energy production, but it also lowers the cost of food waste disposal, reduces greenhouse gas emissions, and is a sustainable energy production approach.
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Temperature does not influence functional response of amphipods consuming different trematode prey
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Direct consumption on free-living cercariae stages of trematodes by non-host organisms interferes with trematode transmission and leads to reduced infections in the next suitable hosts. Consumer functional responses provide a useful tool to examine relationships between consumption rates and ecologically relevant prey densities, whilst also accounting for abiotic factors that likely influence consumption rates. We investigated how temperature influences the consumer functional response of the amphipod Gammarus lacustris towards the cercariae of three freshwater trematodes (Diplostomum, Apatemon and Trichobilharzia). Amphipods displayed different functional responses towards the parasites, with Type II responses for Diplostomum and Type I responses for Apatemon prey. Temperature did not alter the consumption rate of the amphipod predator. Trichobilharzia was likely consumed at similar proportions as Diplostomum; however, this could not be fully evaluated due to low replication. Whilst Type II responses of invertebrate predators are common to various invertebrate prey types, this is the first time a non-filter feeding predator has been shown to exhibit Type I response towards cercarial prey. The prey-specific consumption patterns of amphipods were related to cercarial distribution in the water column rather than to the size of cercariae or temperature influence. The substantial energy flow into food webs by non-host consumer organisms highlights the importance of understanding the mechanisms that modulate functional responses and direct predation in the context of parasitic organisms. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s00436-020-06859-1) contains supplementary material, which is available to authorized users.
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Accumulation of antibiotic-resistant genes in anaerobic biofilm reactor fed with household chemical products
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This research aims to determine the presence of antibiotic-resistant genes (ARG) in anaerobic biofilm reactors (ABR) fed with household chemical products (HCP) such as laundry detergents and handwash without any influx of antibiotics The ABR comprised a three-chamber design with bottom sludge, a middle chamber containing fluidized PVC spiral, and a top chamber with packed coir fiber as a biofilm support medium, respectively Four different ABRs were simultaneously operated for a prolonged period (200 day) and subjected to variations in physicochemical conditions The ABRs fed with HCP exhibited solitary accumulation of log (4 4–7 5) ermC gene copies/g VS whereas, ARG was undetectable in glucose fed ABRs indicating that HCP exhibited antimicrobial activities synonyms to Erythromycin Accumulation of Erythromycin-C (ermC) was relatively higher on the biofilm inhabiting PVC support medium and further accentuated by effluent recycling to log 7 5 ermC gene copies at a ratio of ermC/16S gene copies of 0 65 Physico-chemical factors such as substrate composition, biofilm support medium, and effluent recycling simultaneously elevated the concentration of ermC genes The results indicated that HCP augments the accumulation of ARG in the microbiome, subsequently, increasing the risk in ARG transmission from sewage treatment plants to the ecology and humans
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Evolutionary dynamics of genome size in a radiation of woody plants
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PREMISE: Plant genome size ranges widely, providing many opportunities to examine how genome size variation affects plant form and function. We analyzed trends in chromosome number, genome size, and leaf traits for the woody angiosperm clade Viburnum to examine the evolutionary associations, functional implications, and possible drivers of genome size. METHODS: Chromosome counts and genome size estimates were mapped onto a Viburnum phylogeny to infer the location and frequency of polyploidization events and trends in genome size evolution. Genome size was analyzed with leaf anatomical and physiological data to evaluate the influence of genome size on plant function. RESULTS: We discovered nine independent polyploidization events, two reductions in base chromosome number, and substantial variation in genome size with a slight trend toward genome size reduction in polyploids. We did not find strong relationships between genome size and the functional and morphological traits that have been highlighted at broader phylogenetic scales. CONCLUSIONS: Polyploidization events were sometimes associated with rapid radiations, demonstrating that polyploid lineages can be highly successful. Relationships between genome size and plant physiological function observed at broad phylogenetic scales may be largely irrelevant to the evolutionary dynamics of genome size at smaller scales. The view that plants readily tolerate changes in ploidy and genome size, and often do so, appears to apply to Viburnum.
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Heterotrophic Microbiota from the Oligotrophic Waters of Lake Vostok, Antarctica
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Lake Vostok is the deepest lake of Antarctica but has poor accessibility for study due to a thick glacial cover, however, water samples of this lake have become available for study just recently. Previously, only the microbiome of the ice cover samples was characterized. Here we report results of bacteriological seeding with subsequent identification of the heterotrophic microorganisms (bacteria and micellar fungi) present by 16S rDNA sequencing as well as results of a direct molecular study of the water microbiome. Surprisingly, the data obtained gave evidence of a predominant occurrence of common chemoorganotrophs that were rather psychrotolerant than psychrophilic. We isolated and described strains belonging to eight heterotrophic microbial species able to grow in a rich medium: six bacterial strains belonging to the species Microbacterium testaceum and Microbacterium trichothecenolyticum, Brevundimonas diminuta, Sphingomonas oligophenolica, Sphingomonas sp. and Sphingobium limneticum; and two fungal strains belonging to Dendryphion sp. and Cladosporium fusiforme. Direct study of 16S rDNA purified water samples confirmed the predominance of the Brevundimonas, Microbacterium, Bradyrhizobium, and Bacillus (Bacillus cereus) genera.
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Medicinal-Cosmetic Potential of the Local Endemic Plants of Crete (Greece), Northern Morocco and Tunisia: Priorities for Conservation and Sustainable Exploitation of Neglected and Underutilized Phytogenetic Resources.
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Medicinal-aromatic plants (MAPs) are important sources for the development of new valuable products of interest to human and animal health, and are also used as ornamentals for the horticulture industry. However, the increased global demand and the uncontrolled exploitation of these plants constitute a threat to their sustainability. To date, few scientific investigations have focused on MAPs valorization and their domestication. The purpose of this study was to evaluate for the first time the medicinal-cosmetic potential of 399 local endemic Mediterranean plants confined to Crete (223 taxa), the Mediterranean coast-Rif of Morocco (94), and Tunisia (82). The new methodological scheme was developed by experts through three multidisciplinary co-creative workshops and was adjusted by end-users to point-scoring of nine attributes evaluating the potential of the targeted neglected and underutilized plants (NUPs) in the medicinal-cosmetic sector. The results were demonstrated as percentage of the maximum possible score. These assessments were further linked and discussed with respect to feasibility and readiness timescale evaluations for sustainable exploitation of the focal NUPs. A great diversity of local endemic NUPs (30 taxa, 11 families) were associated with interesting medicinal-cosmetic properties (>35% up to 94.44%). Among them, 8 taxa showed the highest medicinal-cosmetic potential (>55% of maximum possible score), half of which are threatened with extinction. Although ex-situ conservation efforts and applied research work are needed to safeguard and unlock the full potential of the local endemic NUPs evaluated herein, the proposed multifaceted evaluation scheme revealed that some local endemic NUPs of the studied regions can be sustainably exploited in short- or medium-term, following successful examples of Cretan NUPs e.g., Origanum dictramnus. The sustainable exploitation of high scored taxa of the studied regions can be fastened through targeted species-specific research bridging extant research gaps and facilitating conservation and stakeholder attraction.
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Concentration and chemical form of dietary zinc shape the porcine colon microbiome, its functional capacity and antibiotic resistance gene repertoire
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Despite a well-documented effect of high dietary zinc oxide on the pig intestinal microbiota composition less is it yet known about changes in microbial functional properties or the effect of organic zinc sources. Forty weaning piglets in four groups were fed diets supplemented with 40 or 110 ppm zinc as zinc oxide, 110 ppm as Zn-Lysinate, or 2500 ppm as zinc oxide. Host zinc homeostasis, intestinal zinc fractions, and ileal nutrient digestibility were determined as main nutritional and physiological factors putatively driving colon microbial ecology. Metagenomic sequencing of colon microbiota revealed only clear differences at genus level for the group receiving 2500 ppm zinc oxide. However, a clear group differentiation according to dietary zinc concentration and source was observed at species level. Functional analysis revealed significant differences in genes related to stress response, mineral, and carbohydrate metabolism. Taxonomic and functional gene differences were accompanied with clear effects in microbial metabolite concentration. Finally, a selection of certain antibiotic resistance genes by dietary zinc was observed. This study sheds further light onto the consequences of concentration and chemical form of dietary zinc on microbial ecology measures and the resistome in the porcine colon.
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Prophylactic host behaviour discourages pathogen exploitation
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Much work has considered the evolution of pathogens, but little is known about how they respond to changes in host behaviour. We build a model where hosts are able to choose to engage in prophylactic measures that reduce the likelihood of disease transmission. This choice is mediated by costs and benefits associated with prophylaxis, but the fraction of hosts engaged in prophylaxis is also affected by population dynamics. We identify a critical cost threshold above which hosts do not engage in prophylaxis. Below the threshold, prophylactic host behaviour does occur and pathogen virulence, measured by the extent to which it exploits its host, is reduced by the action of selection relative to the level that would otherwise be predicted in the absence of prophylaxis. Our work emphasizes the significance of the dual nature of the trade-off faced by the pathogen between balancing transmission and recovery, and creating new infections in hosts engaging or not engaging in prophylaxis.
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How Behaviour and the Environment Influence Transmission in Mobile Groups
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The movement of individuals living in groups leads to the formation of physical interaction networks over which signals such as information or disease can be transmitted. Direct contacts represent the most obvious opportunities for a signal to be transmitted. However, because signals that persist after being deposited into the environment may later be acquired by other group members, indirect environmentally-mediated transmission is also possible. To date, studies of signal transmission within groups have focused on direct physical interactions and ignored the role of indirect pathways. Here, we use an agent-based model to study how the movement of individuals and characteristics of the signal being transmitted modulate transmission. By analysing the dynamic interaction networks generated from these simulations, we show that the addition of indirect pathways speeds up signal transmission, while the addition of physically-realistic collisions between individuals in densely packed environments hampers it. Furthermore, the inclusion of spatial biases that induce the formation of individual territories, reveals the existence of a trade-off such that optimal signal transmission at the group level is only achieved when territories are of intermediate sizes. Our findings provide insight into the selective pressures guiding the evolution of behavioural traits in natural groups, and offer a means by which multi-agent systems can be engineered to achieve desired transmission capabilities.
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ZOOMICS: Comparative Metabolomics of Red Blood Cells From Guinea Pigs, Humans, and Non-human Primates During Refrigerated Storage for Up to 42 Days
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Unlike other rodents, guinea pigs (Cavia porcellus) have evolutionarily lost their capacity to synthesize vitamin C (ascorbate) de novo and, like several non-human primates and humans, rely on dietary intake and glutathione-dependent recycling to cope with oxidant stress. This is particularly relevant in red blood cell physiology, and especially when modeling blood storage, which exacerbates erythrocyte oxidant stress. Herein we provide a comprehensive metabolomics analysis of fresh and stored guinea pig red blood cell concentrates (n = 20), with weekly sampling from storage day 0 through 42. Results were compared to previously published ZOOMICS studies on red blood cells from three additional species with genetic loss of L-gulonolactone oxidase function, including humans (n = 21), olive baboons (n = 20), and rhesus macaques (n = 20). While metabolic trends were comparable across all species, guinea pig red blood cells demonstrated accelerated alterations of the metabolic markers of the storage lesion that are consistent with oxidative stress. Compared to the other species, guinea pig red blood cells showed aberrant glycolysis, pentose phosphate pathway end product metabolites, purine breakdown products, methylation, glutaminolysis, and markers of membrane lipid remodeling. Consistently, guinea pig red blood cells demonstrated higher end storage hemolysis, and scanning electron microscopy confirmed a higher degree of morphological alterations of their red blood cells, as compared to the other species. Despite a genetic inability to produce ascorbate that is common to the species evaluated, guinea pig red blood cells demonstrate accelerated oxidant stress under standard storage conditions. These data may offer relevant insights into the basal and cold storage metabolism of red blood cells from species that cannot synthesize endogenous ascorbate.
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The montane trees of the Cameroon Highlands, West-Central Africa, with Deinbollia onanae sp. nov. (Sapindaceae), a new primate-dispersed, Endangered species
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We test the hypothesis that the tree species previously known as Deinbollia sp 2 is a new species for science We formally characterise and name this species as Deinbollia onanae (Sapindaceae-Litchi clade) and we discuss it in the context of the assemblage of montane tree species in the Cameroon Highlands of West-Central Africa The new species is a shade-bearing, non-pioneer understorey forest tree species reaching 15 m high and a trunk diameter that can attain over 40 cm at 1 3 m above the ground Seed dispersal has been recorded by chimpanzees (Pan troglodytes ellioti) and by putty-nose monkeys (Cercopithecus nictitans) and the species is used by chimpanzees for nesting Cameroon has the highest species-diversity and species endemism known in this African-Western Indian Ocean genus of 42, mainly lowland species Deinbollia onanae is an infrequent tree species known from six locations in surviving islands of montane (sometimes also upper submontane) forest along the line of the Cameroon Highlands, including one at Ngel Nyaki in Mambilla, Nigeria Deinbollia onanae is here assessed as Endangered according to the IUCN 2012 standard, threatened by severe fragmentation of its mountain forest habitat due to extensive and ongoing clearance for agriculture The majority of the 28 tree species of montane forest (above 2000 m alt ) in the Cameroon Highlands are also widespread in East African mountains (i e are Afromontane wide) Deinbollia onanae is one of only seven species known to be endemic (globally restricted to) these highlands It is postulated that this new species is morphologically closest to Deinbollia oreophila, a frequent species at a lower (submontane) altitudinal band of the same range Detailed ecological data on Deinbollia onanae from the Nigerian location, Ngel Nyaki, where it has been known under the name Deinbollia “pinnata”, is reviewed
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Significance of Shewanella Species for the Phytoavailability and Toxicity of Arsenic-A Review
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The distribution of arsenic continues due to natural and anthropogenic activities, with varying degrees of impact on plants, animals, and the entire ecosystem. Interactions between iron (Fe) oxides, bacteria, and arsenic are significantly linked to changes in the mobility, toxicity, and availability of arsenic species in aquatic and terrestrial habitats. As a result of these changes, toxic As species become available, posing a range of threats to the entire ecosystem. This review elaborates on arsenic toxicity, the mechanisms of its bioavailability, and selected remediation strategies. The article further describes how the detoxification and methylation mechanisms used by Shewanella species could serve as a potential tool for decreasing phytoavailable As and lessening its contamination in the environment. If taken into account, this approach will provide a globally sustainable and cost-effective strategy for As remediation and more information to the literature on the unique role of this bacterial species in As remediation as opposed to conventional perception of its role as a mobiliser of As.
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Rapid Response Crop Maps in Data Sparse Regions
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Spatial information on cropland distribution, often called cropland or crop maps, are critical inputs for a wide range of agriculture and food security analyses and decisions. However, high-resolution cropland maps are not readily available for most countries, especially in regions dominated by smallholder farming (e.g., sub-Saharan Africa). These maps are especially critical in times of crisis when decision makers need to rapidly design and enact agriculture-related policies and mitigation strategies, including providing humanitarian assistance, dispersing targeted aid, or boosting productivity for farmers. A major challenge for developing crop maps is that many regions do not have readily accessible ground truth data on croplands necessary for training and validating predictive models, and field campaigns are not feasible for collecting labels for rapid response. We present a method for rapid mapping of croplands in regions where little to no ground data is available. We present results for this method in Togo, where we delivered a high-resolution (10 m) cropland map in under 10 days to facilitate rapid response to the COVID-19 pandemic by the Togolese government. This demonstrated a successful transition of machine learning applications research to operational rapid response in a real humanitarian crisis. All maps, data, and code are publicly available to enable future research and operational systems in data-sparse regions.
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Addressing the long- and short-run effects of climate change on major food crops production in Turkey
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This study assessed the long-run (LR) and short-run (SR) impacts of climatic and non-climatic factors, i.e., CO(2) emissions (CO(2)e), average level of temperature (ALT), average level of precipitation (ALP), area harvested of wheat and rice crops (AHW and (AHR), domestic credit (DCR), and agricultural labor (ALB) on wheat and rice production (WP and RP) in Turkey by using annual time series data ranging from 1980 to 2016 and by employing several econometric techniques. The autoregressive distributed lag-bounds (ARDL) approach and the Johansen and Juselius cointegration (JJC) test confirmed a valid long-term connection among underlying variables. The estimation results from the ARDL model reveal that climatic factors such as CO(2) emissions and temperature adversely affected wheat production in the long run as well as in the short run, whereas precipitation positively improved wheat production in both periods. Further results indicate that non-climatic factors like area harvested of wheat and domestic credit positively and significantly enhanced wheat production in the long run and short run. Similarly, CO(2) emissions also adversely affected rice production in both periods, while temperature and precipitation positively contributed towards rice production in both cases. In addition, area harvested of rice positively and significantly boosted rice production in the long run as well as in the short run, while domestic credit negatively influenced rice production in the long run but in the short run positively improved rice production. Additionally, the outcomes of the VECM Granger Causality for both rice and wheat production confirm that both climatic and non-climatic variables have a strong influence on the production of both crops. This study found that climate change has a deleterious influence on both wheat and rice production; therefore, the study suggests that temperature-resistant varieties of both crops should be developed and introduced by agricultural research institutions. In addition to this, up-to-date information is more needed related to climate change, and in the farming communities, it should be provided by agricultural extension workers.
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Specific shoot formation in Miscanthus saccharif lorus (Poaceae) under different environmental factors and DNA passportization using ISSR markers
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The generic complex Miscanthus Anderss. (Poaceae) is a unique example among herbaceous plants characterized by high values of growth of aboveground vegetative mass and practical use as a valuable source of alternative energy. Miscanthus is one of the most eff icient solar energy accumulators, and since phytomeliorative use implies the cultivation of these resource plants in inconvenient and semi-shady areas, the question about the effect of insuff icient lighting on the productivity of Miscanthus arises. As a result of a long-lasing introduction effort, the Central Siberian Botanical Garden SB RAS created a population of Miscanthus saccharif lorus (Maxim.) Benth., which has good prospects for growing under the conditions of the forest-steppe area in Western Siberia. The goals of our study were: (1) to determine the peculiarities of shoot formation, (2) to assess the cellulose and lignin accumulation in M. saccharif lorus populations under different lighting conditions and (3) to perform a DNA passportization of the Miscanthus population by ISSR marking. Evaluation of shoot formation and the amount of accumulated cellulose and lignin in plants was carried out under different degrees of illumination: one variant was grown in a sunny area, and the other, in partial shade. As a result of analysis of variance, it was found that the number of shoots does not depend on environmental conditions, but on the age of the plant, while environmental conditions have a signif icant effect on plant height. Although the samples of both M. saccharif lorus variants were characterized by different rates of creation of a continuous projective cover, plants in semi-shaded areas formed up to 89.34 % of shoots compared to their peers in illuminated areas, which did not affect signif icantly the size of the aboveground mass and the cellulose content in it. As a result of ISSR-analysis of genomic DNA in the M. saccharif lorus population, unique molecular polymorphic fragments were identif ied, which can be used for identif ication and DNA passportization at the inter-population level. Thus, the complex use of M. saccharif lorus as a valuable meliorative and bioenergetic culture is due to the high adaptive potential of this species. It was found that the illumination factor has virtually no effect on the amount of the cellulose content in the shoot, and a reduced content of the technologically undesirable lignin was observed in plants growing in the partial shade conditions.
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Assessing Rates of Long-distance Carbon Transport in Arabidopsis by Collecting Phloem Exudations into EDTA Solutions after Photosynthetic Labeling with [14C]CO2.
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Phloem loading and transport of photoassimilate from photoautotrophic source leaves to heterotrophic sink organs are essential physiological processes that help the disparate organs of a plant function as a single, unified organism. We present three protocols we routinely use in combination with each other to assess (1) the relative rates of sucrose (Suc) loading into the phloem vascular system of mature leaves ( Yadav et al., 2017a ), (2) the relative rates of carbon loading and transport through the phloem (this protocol), and (3) the relative rates of carbon unloading into heterotrophic sink organs, specifically roots, after long-distance transport ( Yadav et al., 2017b ), We propose that conducting all three protocols on experimental and control plants provides a reliable comparison of whole-plant carbon partitioning, and minimizes ambiguities associated with a single protocol conducted in isolation ( Dasgupta et al., 2014 ; Khadilkar et al., 2016 ). In this protocol, [14C]CO2 is photoassimilated in source leaves and phloem loading and transport of photoassimilate is quantified by collecting phloem exudates into an EDTA solution followed by scintillation counting.
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