Upload 10 files
Browse files- config.json +30 -0
- model.safetensors +3 -0
- optimizer.pt +3 -0
- rng_state.pth +3 -0
- scheduler.pt +3 -0
- special_tokens_map.json +37 -0
- tokenizer_config.json +52 -0
- trainer_state.json +1752 -0
- training_args.bin +3 -0
- vocab.txt +33 -0
config.json
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{
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"_name_or_path": "/scratch/gpfs/jiaweim/epitope/w-finetuned-epitope_attempt10_150M_200k_weighted_accuracy_3/checkpoint-102930/",
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"architectures": [
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"EsmForTokenClassification"
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],
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"attention_probs_dropout_prob": 0.0,
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"classifier_dropout": null,
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"emb_layer_norm_before": false,
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"esmfold_config": null,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.0,
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"hidden_size": 640,
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"initializer_range": 0.02,
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"intermediate_size": 2560,
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"is_folding_model": false,
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"layer_norm_eps": 1e-05,
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"mask_token_id": 32,
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"max_position_embeddings": 1026,
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"model_type": "esm",
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"num_attention_heads": 20,
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"num_hidden_layers": 30,
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"pad_token_id": 1,
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"position_embedding_type": "rotary",
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"token_dropout": true,
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"torch_dtype": "float32",
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"transformers_version": "4.36.0",
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"use_cache": true,
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"vocab_list": null,
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"vocab_size": 33
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:b36335d6ab880fa0a317ccaba773cfead028106c846d5443bc202e2ecaabcaa1
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size 593608020
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optimizer.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:07b9b017b6ad5b8f58950d025119b252b24ad3a2ec4246d1d3adb755e9f41e03
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size 1182240577
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rng_state.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:c48a21911d545504d8a7f28c4880b89ebc54ff0c22e4c7c670fd186f35b48d03
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size 14244
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scheduler.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:c595817b28af6143a0f144be87bea7931488e4f7ee2534b82300f8afd1f98c15
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size 1064
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special_tokens_map.json
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{
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"cls_token": {
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"content": "<cls>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"eos_token": {
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"content": "<eos>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"mask_token": {
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"content": "<mask>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"pad_token": {
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"content": "<pad>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"unk_token": {
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"content": "<unk>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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}
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}
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tokenizer_config.json
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{
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"added_tokens_decoder": {
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"0": {
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"content": "<cls>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"1": {
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"content": "<pad>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"2": {
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"content": "<eos>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"3": {
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"content": "<unk>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"32": {
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"content": "<mask>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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}
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},
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"clean_up_tokenization_spaces": true,
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"cls_token": "<cls>",
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"eos_token": "<eos>",
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"mask_token": "<mask>",
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"model_max_length": 1000000000000000019884624838656,
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"pad_token": "<pad>",
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"tokenizer_class": "EsmTokenizer",
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"unk_token": "<unk>"
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}
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trainer_state.json
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| 1 |
+
<cls>
|
| 2 |
+
<pad>
|
| 3 |
+
<eos>
|
| 4 |
+
<unk>
|
| 5 |
+
L
|
| 6 |
+
A
|
| 7 |
+
G
|
| 8 |
+
V
|
| 9 |
+
S
|
| 10 |
+
E
|
| 11 |
+
R
|
| 12 |
+
T
|
| 13 |
+
I
|
| 14 |
+
D
|
| 15 |
+
P
|
| 16 |
+
K
|
| 17 |
+
Q
|
| 18 |
+
N
|
| 19 |
+
F
|
| 20 |
+
Y
|
| 21 |
+
M
|
| 22 |
+
H
|
| 23 |
+
W
|
| 24 |
+
C
|
| 25 |
+
X
|
| 26 |
+
B
|
| 27 |
+
U
|
| 28 |
+
Z
|
| 29 |
+
O
|
| 30 |
+
.
|
| 31 |
+
-
|
| 32 |
+
<null_1>
|
| 33 |
+
<mask>
|