Upload README.md with huggingface_hub
Browse files
README.md
CHANGED
|
@@ -1,106 +1,9 @@
|
|
| 1 |
-
|
| 2 |
-
|
| 3 |
-
|
| 4 |
-
|
| 5 |
-
|
| 6 |
-
|
| 7 |
-
|
| 8 |
-
|
| 9 |
-
|
| 10 |
-
# GraphMatcher
|
| 11 |
-
The GraphMatcher aims to find the correspondes between two ontologies and outputs the possible alignments between them.
|
| 12 |
-
|
| 13 |
-
The GraphMatcher leverages Graph Attention Network[2] in its neural network structure.
|
| 14 |
-
The project leverages a new neighborhood aggregation algorithm, so it examines contribution of neighboring terms which have not been used in the previous matchers before.
|
| 15 |
-
|
| 16 |
-
The project has been submitted to The 17th International Workshop on Ontology Matching's OAEI 2022 (ISWC-2022) for conference track and obtained the highest F1-measure in uncertain reference alignments among other experts participating to this challenge. Its system paper has been published, and it was invited to the poster presentation session.
|
| 17 |
-
|
| 18 |
-
## Set up
|
| 19 |
-
* 1.) install requirements
|
| 20 |
-
``` pip install -r requirements.txt```
|
| 21 |
-
|
| 22 |
-
* 2.) set the parameters in the config.ini
|
| 23 |
-
````
|
| 24 |
-
[General]
|
| 25 |
-
dataset = ------> name of a dataset e.g., conference.
|
| 26 |
-
K = ------> the parameter for K fold cross-validation
|
| 27 |
-
ontology_split = ------> True/False
|
| 28 |
-
max_false_examples = ------>
|
| 29 |
-
|
| 30 |
-
[Paths]
|
| 31 |
-
dataset_folder = ------> a path to the ontologies
|
| 32 |
-
alignment_folder = ------> a path to the reference alignments
|
| 33 |
-
save_model_path = ------> save the model to the path
|
| 34 |
-
load_model_path = ------> model path
|
| 35 |
-
output_folder = ------> The output folder for the alignments
|
| 36 |
-
|
| 37 |
-
[Parameters]
|
| 38 |
-
max_paths = ------>
|
| 39 |
-
max_pathlen = ------> ( number of neighboring concepts' types: Equivalent class, subclass of(general to specific or specific to general(2))...
|
| 40 |
-
[Hyperparameters]
|
| 41 |
-
|
| 42 |
-
lr = ------> learning rate
|
| 43 |
-
num_epochs = ------> number of epochs
|
| 44 |
-
weight_decay = ------> Weight decay
|
| 45 |
-
batch_size = ------> Batch Size (8/16/32)
|
| 46 |
-
|
| 47 |
-
````
|
| 48 |
-
|
| 49 |
-
* 3.) train the model
|
| 50 |
-
```python
|
| 51 |
-
python src/train_model.py
|
| 52 |
-
|
| 53 |
-
```
|
| 54 |
-
* 4.) test the model
|
| 55 |
-
```python
|
| 56 |
-
python src/test_model.py ${source.rdf} ${target.rdf}
|
| 57 |
-
```
|
| 58 |
-
### Sample Alignment:
|
| 59 |
-
```xml
|
| 60 |
-
<map>
|
| 61 |
-
<Cell>
|
| 62 |
-
<entity1 rdf:resource='http://conference#has_the_last_name'/>
|
| 63 |
-
<entity2 rdf:resource='http://confof#hasSurname'/>
|
| 64 |
-
<relation>=</relation>
|
| 65 |
-
<measure rdf:datatype='http://www.w3.org/2001/XMLSchema#float'>0.972</measure>
|
| 66 |
-
</Cell>
|
| 67 |
-
</map>
|
| 68 |
-
```
|
| 69 |
-
|
| 70 |
-
* 5.) evaluate the model with the MELT
|
| 71 |
-
|
| 72 |
-
|
| 73 |
-
Note: The codes in train_model.py and test_model.py are partially based on the VeeAlign[2] project with the permission of its main author. I would like to thank the main author.
|
| 74 |
-
|
| 75 |
-
## References:
|
| 76 |
-
[1]
|
| 77 |
-
````
|
| 78 |
-
@inproceedings{iyer-etal-2021-veealign,
|
| 79 |
-
title = "{V}ee{A}lign: Multifaceted Context Representation Using Dual Attention for Ontology Alignment",
|
| 80 |
-
author = "Iyer, Vivek and
|
| 81 |
-
Agarwal, Arvind and
|
| 82 |
-
Kumar, Harshit",
|
| 83 |
-
booktitle = "Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing",
|
| 84 |
-
month = nov,
|
| 85 |
-
year = "2021",
|
| 86 |
-
address = "Online and Punta Cana, Dominican Republic",
|
| 87 |
-
publisher = "Association for Computational Linguistics",
|
| 88 |
-
url = "https://aclanthology.org/2021.emnlp-main.842",
|
| 89 |
-
doi = "10.18653/v1/2021.emnlp-main.842",
|
| 90 |
-
pages = "10780--10792",
|
| 91 |
-
}
|
| 92 |
-
````
|
| 93 |
-
[2]
|
| 94 |
-
````
|
| 95 |
-
@misc{https://doi.org/10.48550/arxiv.1710.10903,
|
| 96 |
-
title = {Graph Attention Networks},
|
| 97 |
-
author = {Veličković, Petar and Cucurull, Guillem and Casanova, Arantxa and Romero, Adriana and Liò, Pietro and Bengio, Yoshua},
|
| 98 |
-
keywords = {Machine Learning (stat.ML), Artificial Intelligence (cs.AI), Machine Learning (cs.LG), Social and Information Networks (cs.SI), FOS: Computer and information sciences, FOS: Computer and information sciences},
|
| 99 |
-
url = {https://arxiv.org/abs/1710.10903},
|
| 100 |
-
publisher = {arXiv},
|
| 101 |
-
doi = {10.48550/ARXIV.1710.10903},
|
| 102 |
-
year = {2017},
|
| 103 |
-
copyright = {arXiv.org perpetual, non-exclusive license}
|
| 104 |
-
}
|
| 105 |
-
|
| 106 |
-
````
|
|
|
|
| 1 |
+
# My Model
|
| 2 |
+
This is my model card.
|
| 3 |
+
|
| 4 |
+
## Usage
|
| 5 |
+
```python
|
| 6 |
+
from transformers import AutoModel, AutoTokenizer
|
| 7 |
+
tokenizer = AutoTokenizer.from_pretrained("Sefika/GraphMatcher")
|
| 8 |
+
model = AutoModel.from_pretrained("Sefika/GraphMatcher")
|
| 9 |
+
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|