base_model: westlake-repl/SaProt_35M_AF2
library_name: peft
Base model: westlake-repl/SaProt_35M_AF2
Model Card for Model ID
This model is used to predict fitness of GB1 protein variants.
Task type
protein level regression
Dataset description
The dataset is from:
Nicholas C Wu, Lei Dai, C Anders Olson, James O Lloyd-Smith, Ren Sun (2016) Adaptation in protein fitness landscapes is facilitated by indirect paths eLife 5:e16965 https://doi.org/10.7554/eLife.16965
Label is the fitness of mutant protein. The fitness of each variant can be viewed as the fitness relative to wildtype, such that = 1. Therefore all labels are larger than 0, if label >1 means high fitness compare to wildtype.
Model input type
Amino acid sequence
Performance
test_spearman: 0.54
test_pearson: 0.98
LoRA config
lora_dropout: 0.0
lora_alpha: 16
target_modules: ["query", "key", "value", "intermediate.dense", "output.dense"]
modules_to_save: ["classifier"]
Training config
class: AdamW
betas: (0.9, 0.98)
weight_decay: 0.01
learning rate: 1e-3
epoch: 20
batch size: 1000
precision: 16-mixed