New model version

args.json

@@ -1,14 +1,13 @@
 {
-    "custom_vocab_files": [
-        "/home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/corpora/bio/biomedical-clinical.txt"
-    ],
-    "vocab_name": "bio-biomedical-clinical-vocab-52k",
-    "tokenizer": "bbpe",
+    "tokenizer_path_name": null,
+    "vocab_name": "bio-clinical",
+    "tokenizer": "bbpe-roberta",
     "lowercase": false,
-    "vocab_size": 52000,
-    "min_frequency": 10,
+    "vocab_size": 50262,
+    "min_frequency": 6,
     "extra_tokens": [],
     "limit_alphabet": 1000,
+    "max_len": 512,
     "no_show_progress": false,
     "strip_accents": false,
     "no_handle_chinese_chars": false,
@@ -16,9 +15,14 @@
     "reserve_tokens": 0,
     "use_tokenizers": false,
     "no_fairseq": false,
+    "bbpe_add_prefix_space": true,
+    "single_paragraph_add_punct": true,
+    "tok_batch_size": 100000000,
     "files": [
-        "/home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/corpora/bio/biomedical-clinical.txt"
+        "/home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_valid_test_split_output/bio-clinical-2021-12-07-1608-d1d3-fb2f/train.txt",
+        "/home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_valid_test_split_output/bio-clinical-2021-12-07-1608-d1d3-fb2f/valid.txt",
+        "/home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_valid_test_split_output/bio-clinical-2021-12-07-1608-d1d3-fb2f/test.txt"
     ],
-    "output_root_path": "/home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/output/model-ready_output/bio-biomedical-clinical-vocab-52k-2021-04-26-0955-3a71-240f",
-    "commit_hash": "3a7116cf776527c411869becbe6fad8b9e3f5e56"
+    "output_root_path": "/home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e",
+    "commit_hash": "d1d3920e7012caf14c9d6968fded36e0dd719a51"
 }

config.json

@@ -18,8 +18,8 @@
   "num_hidden_layers": 12,
   "pad_token_id": 1,
   "position_embedding_type": "absolute",
-  "transformers_version": "4.4.0",
+  "transformers_version": "4.6.0",
   "type_vocab_size": 1,
   "use_cache": true,
-  "vocab_size": 52000
+  "vocab_size": 50262
 }

dict.txt

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process.log

@@ -3,6 +3,6 @@ Executing train_tokenizer.py
 training bbpe tokenizer
 Initialize an empty tokenizer
 training
-saving model tokenizer to /home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/output/model-ready_output/bio-biomedical-clinical-vocab-52k-2021-04-26-0955-3a71-240f/train_tokenizer_output/train-tokenizer-2021-04-26-1009-3a71-e9ca
-saving pretrained to /home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/output/model-ready_output/bio-biomedical-clinical-vocab-52k-2021-04-26-0955-3a71-240f/train_tokenizer_output/train-tokenizer-2021-04-26-1009-3a71-e9ca
-saving config to /home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/output/model-ready_output/bio-biomedical-clinical-vocab-52k-2021-04-26-0955-3a71-240f/train_tokenizer_output/train-tokenizer-2021-04-26-1009-3a71-e9ca
+saving model tokenizer to /home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_tokenizer_output/train-tokenizer-2021-12-07-1625-d1d3-74b8
+saving pretrained to /home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_tokenizer_output/train-tokenizer-2021-12-07-1625-d1d3-74b8
+saving config to /home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_tokenizer_output/train-tokenizer-2021-12-07-1625-d1d3-74b8

pytorch_model.bin

@@ -1,3 +1,3 @@
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-oid sha256:2e0c8d7bb348e40327b7c38eb6995c74d5c64345bc4ab9b3deff58e7359f15f7
-size 504420627
+oid sha256:8465af10873f1fff9361fd90d493db06f130f7065c0c9122951f0225b860b42c
+size 499067539

tokenizer_config.json

@@ -1 +1 @@
-{"unk_token": {"content": "<unk>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "bos_token": {"content": "<s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "eos_token": {"content": "</s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "add_prefix_space": true, "errors": "replace", "sep_token": {"content": "</s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "cls_token": {"content": "<s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "pad_token": {"content": "<pad>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "mask_token": {"content": "<mask>", "single_word": false, "lstrip": true, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "max_len": 512, "special_tokens_map_file": null, "name_or_path": "/home/usuaris/veu/casimiro.pio.carrino/projects/corpus-utils-lm/output/model-ready_output/bio-biomedical-clinical-vocab-52k-2021-04-26-0955-3a71-240f/train_tokenizer_output/train-tokenizer-2021-04-26-1009-3a71-e9ca"}
+{"unk_token": {"content": "<unk>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "bos_token": {"content": "<s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "eos_token": {"content": "</s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "add_prefix_space": true, "errors": "replace", "sep_token": {"content": "</s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "cls_token": {"content": "<s>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "pad_token": {"content": "<pad>", "single_word": false, "lstrip": false, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "mask_token": {"content": "<mask>", "single_word": false, "lstrip": true, "rstrip": false, "normalized": true, "__type": "AddedToken"}, "max_len": 512, "special_tokens_map_file": null, "name_or_path": "/home/shared/dt01/temutauro/ccasimiro/corpus-utils-lm/output/model-ready_output/bio-clinical-vocab-50262-2021-12-07-1604-d1d3-849e/train_tokenizer_output/train-tokenizer-2021-12-07-1625-d1d3-74b8"}