Hugging Face's logo

PDBEurope
/
Bioformer8L-ProteinStructure-NER-v0.1

Token Classification
Transformers
PyTorch
English
bert
biology
protein structure
token classification
Eval Results
Inference Endpoints
Model card Files Community
mevol commited on
Commit
71b2f32
•
1 Parent(s): 02f0be7

removing none-essential files for running predictions

Browse files
Files changed (5) hide show
  1. optimizer.pt +0 -3
  2. rng_state.pth +0 -3
  3. scheduler.pt +0 -3
  4. trainer_state.json +0 -226
  5. training_args.bin +0 -3
optimizer.pt DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:b39ef12875e83f443c75ec35530cc20fe735318dc7da605d6e6d7e502e61b775
3
- size 338331642
 
 
 
 
rng_state.pth DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:73c2594a1e721a20cff9f81a9c6b35735e5ef856ae026e6f451a155090123133
3
- size 14244
 
 
 
 
scheduler.pt DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:49a2812a42769889644fb265b287a3cb6966f030d4b6988b60a19dba3930cea8
3
- size 1064
 
 
 
 
trainer_state.json DELETED
@@ -1,226 +0,0 @@
1
- {
2
- "best_metric": null,
3
- "best_model_checkpoint": null,
4
- "epoch": 9.659090909090908,
5
- "global_step": 8500,
6
- "is_hyper_param_search": false,
7
- "is_local_process_zero": true,
8
- "is_world_process_zero": true,
9
- "log_history": [
10
- {
11
- "epoch": 0.57,
12
- "learning_rate": 1.8863636363636366e-05,
13
- "loss": 0.9603,
14
- "step": 500
15
- },
16
- {
17
- "epoch": 1.0,
18
- "eval_accuracy": 0.917317101584343,
19
- "eval_f1": 0.780907047467936,
20
- "eval_loss": 0.3360126316547394,
21
- "eval_precision": 0.7684100962789487,
22
- "eval_recall": 0.7938172043010753,
23
- "eval_runtime": 4.4585,
24
- "eval_samples_per_second": 211.507,
25
- "eval_steps_per_second": 42.391,
26
- "step": 880
27
- },
28
- {
29
- "epoch": 1.14,
30
- "learning_rate": 1.772727272727273e-05,
31
- "loss": 0.4145,
32
- "step": 1000
33
- },
34
- {
35
- "epoch": 1.7,
36
- "learning_rate": 1.6590909090909094e-05,
37
- "loss": 0.2846,
38
- "step": 1500
39
- },
40
- {
41
- "epoch": 2.0,
42
- "eval_accuracy": 0.940004659832246,
43
- "eval_f1": 0.8470136913817051,
44
- "eval_loss": 0.23408983647823334,
45
- "eval_precision": 0.8338325302773799,
46
- "eval_recall": 0.8606182795698925,
47
- "eval_runtime": 5.0803,
48
- "eval_samples_per_second": 185.62,
49
- "eval_steps_per_second": 37.203,
50
- "step": 1760
51
- },
52
- {
53
- "epoch": 2.27,
54
- "learning_rate": 1.5454545454545454e-05,
55
- "loss": 0.2114,
56
- "step": 2000
57
- },
58
- {
59
- "epoch": 2.84,
60
- "learning_rate": 1.431818181818182e-05,
61
- "loss": 0.1634,
62
- "step": 2500
63
- },
64
- {
65
- "epoch": 3.0,
66
- "eval_accuracy": 0.9476351351351351,
67
- "eval_f1": 0.8742690058479533,
68
- "eval_loss": 0.20282697677612305,
69
- "eval_precision": 0.8646161934805467,
70
- "eval_recall": 0.8841397849462366,
71
- "eval_runtime": 3.3011,
72
- "eval_samples_per_second": 285.658,
73
- "eval_steps_per_second": 57.253,
74
- "step": 2640
75
- },
76
- {
77
- "epoch": 3.41,
78
- "learning_rate": 1.3181818181818183e-05,
79
- "loss": 0.1243,
80
- "step": 3000
81
- },
82
- {
83
- "epoch": 3.98,
84
- "learning_rate": 1.2045454545454547e-05,
85
- "loss": 0.1158,
86
- "step": 3500
87
- },
88
- {
89
- "epoch": 4.0,
90
- "eval_accuracy": 0.9500232991612302,
91
- "eval_f1": 0.8811803278688525,
92
- "eval_loss": 0.1980859786272049,
93
- "eval_precision": 0.8603072983354674,
94
- "eval_recall": 0.9030913978494624,
95
- "eval_runtime": 4.9698,
96
- "eval_samples_per_second": 189.745,
97
- "eval_steps_per_second": 38.03,
98
- "step": 3520
99
- },
100
- {
101
- "epoch": 4.55,
102
- "learning_rate": 1.0909090909090909e-05,
103
- "loss": 0.0808,
104
- "step": 4000
105
- },
106
- {
107
- "epoch": 5.0,
108
- "eval_accuracy": 0.9508970177073626,
109
- "eval_f1": 0.8861842105263158,
110
- "eval_loss": 0.19827169179916382,
111
- "eval_precision": 0.8679123711340206,
112
- "eval_recall": 0.905241935483871,
113
- "eval_runtime": 4.2259,
114
- "eval_samples_per_second": 223.15,
115
- "eval_steps_per_second": 44.725,
116
- "step": 4400
117
- },
118
- {
119
- "epoch": 5.11,
120
- "learning_rate": 9.772727272727273e-06,
121
- "loss": 0.0809,
122
- "step": 4500
123
- },
124
- {
125
- "epoch": 5.68,
126
- "learning_rate": 8.636363636363637e-06,
127
- "loss": 0.0679,
128
- "step": 5000
129
- },
130
- {
131
- "epoch": 6.0,
132
- "eval_accuracy": 0.952673578751165,
133
- "eval_f1": 0.89337822671156,
134
- "eval_loss": 0.1982535719871521,
135
- "eval_precision": 0.8779032048786817,
136
- "eval_recall": 0.9094086021505376,
137
- "eval_runtime": 4.536,
138
- "eval_samples_per_second": 207.892,
139
- "eval_steps_per_second": 41.667,
140
- "step": 5280
141
- },
142
- {
143
- "epoch": 6.25,
144
- "learning_rate": 7.500000000000001e-06,
145
- "loss": 0.0582,
146
- "step": 5500
147
- },
148
- {
149
- "epoch": 6.82,
150
- "learning_rate": 6.363636363636364e-06,
151
- "loss": 0.0468,
152
- "step": 6000
153
- },
154
- {
155
- "epoch": 7.0,
156
- "eval_accuracy": 0.9559354613233924,
157
- "eval_f1": 0.9001193792280144,
158
- "eval_loss": 0.20358432829380035,
159
- "eval_precision": 0.8884524744697565,
160
- "eval_recall": 0.9120967741935484,
161
- "eval_runtime": 4.9544,
162
- "eval_samples_per_second": 190.337,
163
- "eval_steps_per_second": 38.148,
164
- "step": 6160
165
- },
166
- {
167
- "epoch": 7.39,
168
- "learning_rate": 5.2272727272727274e-06,
169
- "loss": 0.0436,
170
- "step": 6500
171
- },
172
- {
173
- "epoch": 7.95,
174
- "learning_rate": 4.0909090909090915e-06,
175
- "loss": 0.0403,
176
- "step": 7000
177
- },
178
- {
179
- "epoch": 8.0,
180
- "eval_accuracy": 0.955527726001864,
181
- "eval_f1": 0.8995240613432047,
182
- "eval_loss": 0.20606616139411926,
183
- "eval_precision": 0.8850156087408949,
184
- "eval_recall": 0.9145161290322581,
185
- "eval_runtime": 3.9742,
186
- "eval_samples_per_second": 237.282,
187
- "eval_steps_per_second": 47.557,
188
- "step": 7040
189
- },
190
- {
191
- "epoch": 8.52,
192
- "learning_rate": 2.954545454545455e-06,
193
- "loss": 0.0336,
194
- "step": 7500
195
- },
196
- {
197
- "epoch": 9.0,
198
- "eval_accuracy": 0.9554694780987885,
199
- "eval_f1": 0.9019062748212867,
200
- "eval_loss": 0.21168170869350433,
201
- "eval_precision": 0.8884976525821596,
202
- "eval_recall": 0.915725806451613,
203
- "eval_runtime": 2.986,
204
- "eval_samples_per_second": 315.802,
205
- "eval_steps_per_second": 63.294,
206
- "step": 7920
207
- },
208
- {
209
- "epoch": 9.09,
210
- "learning_rate": 1.8181818181818183e-06,
211
- "loss": 0.0328,
212
- "step": 8000
213
- },
214
- {
215
- "epoch": 9.66,
216
- "learning_rate": 6.818181818181818e-07,
217
- "loss": 0.0312,
218
- "step": 8500
219
- }
220
- ],
221
- "max_steps": 8800,
222
- "num_train_epochs": 10,
223
- "total_flos": 408432261397380.0,
224
- "trial_name": null,
225
- "trial_params": null
226
- }
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
training_args.bin DELETED
@@ -1,3 +0,0 @@
1
- version https://git-lfs.github.com/spec/v1
2
- oid sha256:b551fbf29c3318236ff0e19876fb0afff99641683390db79faf1b4fadab8b042
3
- size 4088