Training in progress, epoch 3

model.safetensors

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:f4c5370443717c5173d27abd91353e947b187245fa0e6b59d1edf34cfc30faca
+oid sha256:087d9d4bedd3849709ca7884cfccd0f33bde9f312987cd3875e0ba59583e1769
 size 437958648

runs/Apr26_17-29-49_NCATS-2265430-P/events.out.tfevents.1714167008.NCATS-2265430-P.25328.0

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:4e2730ab36ec71dffd36464b89405cd57786eaf7c55969662a293a5afa9e5ec8
-size 173159
+oid sha256:e2e2388e25881559e39f9587e7c19b7fdaec84f2f04a314f704c3d3c5640a409
+size 257398

tmp-checkpoint-1191/config.json

@@ -0,0 +1,34 @@
+{
+  "_name_or_path": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract",
+  "architectures": [
+    "BertForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "the paper is not a primary experimental study in rare disease or the study is not directly investigating the natural history of a disease",
+    "1": "its primary contribution centers on observing the time course of a rare disease"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "its primary contribution centers on observing the time course of a rare disease": 1,
+    "the paper is not a primary experimental study in rare disease or the study is not directly investigating the natural history of a disease": 0
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "problem_type": "single_label_classification",
+  "torch_dtype": "float32",
+  "transformers_version": "4.38.2",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 30522
+}

tmp-checkpoint-1191/model.safetensors

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:087d9d4bedd3849709ca7884cfccd0f33bde9f312987cd3875e0ba59583e1769
+size 437958648

tmp-checkpoint-1191/optimizer.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8c373a7f0c42d908ccec90a4cd659c220e82fa8b854a68325fb7579746ef4083
+size 876032698

tmp-checkpoint-1191/rng_state.pth

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:ee0f60c01f056fef9e83434ee7ca0310ab58a7601a31c2d4dd83e9721c27a854
+size 13990

tmp-checkpoint-1191/scheduler.pt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:121b0135b78825e1396b7a359c2cca5782e8330b52e8ba8b1188c1753cc388bd
+size 1064

tmp-checkpoint-1191/special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tmp-checkpoint-1191/tokenizer_config.json

@@ -0,0 +1,57 @@
+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "4": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": true,
+  "mask_token": "[MASK]",
+  "model_max_length": 1000000000000000019884624838656,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

tmp-checkpoint-1191/training_args.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:284f32d1b48844b69ce057c0dadbd8428f94a8aaa545c1553173391cf437e0df
+size 4984