End of training

README.md

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+---
+base_model: dmis-lab/biobert-v1.1
+tags:
+- generated_from_trainer
+metrics:
+- precision
+- recall
+- accuracy
+- f1
+model-index:
+- name: results
+  results: []
+---
+
+<!-- This model card has been generated automatically according to the information the Trainer had access to. You
+should probably proofread and complete it, then remove this comment. -->
+
+# results
+
+This model is a fine-tuned version of [dmis-lab/biobert-v1.1](https://huggingface.co/dmis-lab/biobert-v1.1) on the None dataset.
+It achieves the following results on the evaluation set:
+- Loss: 0.4062
+- Precision: 0.9169
+- Recall: 0.9170
+- Accuracy: 0.9170
+- F1: 0.9170
+
+## Model description
+
+More information needed
+
+## Intended uses & limitations
+
+More information needed
+
+## Training and evaluation data
+
+More information needed
+
+## Training procedure
+
+### Training hyperparameters
+
+The following hyperparameters were used during training:
+- learning_rate: 2e-05
+- train_batch_size: 16
+- eval_batch_size: 16
+- seed: 42
+- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
+- lr_scheduler_type: linear
+- num_epochs: 5
+
+### Training results
+
+| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | Accuracy | F1     |
+|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:--------:|:------:|
+| No log        | 1.0   | 308  | 0.3815          | 0.8655    | 0.8595 | 0.8584   | 0.8587 |
+| 0.4485        | 2.0   | 616  | 0.3222          | 0.9076    | 0.9073 | 0.9072   | 0.9072 |
+| 0.4485        | 3.0   | 924  | 0.3684          | 0.9101    | 0.9098 | 0.9097   | 0.9099 |
+| 0.1574        | 4.0   | 1232 | 0.3878          | 0.9163    | 0.9162 | 0.9162   | 0.9162 |
+| 0.0613        | 5.0   | 1540 | 0.4062          | 0.9169    | 0.9170 | 0.9170   | 0.9170 |
+
+
+### Framework versions
+
+- Transformers 4.35.2
+- Pytorch 2.1.0+cu121
+- Datasets 2.17.1
+- Tokenizers 0.15.2

config.json

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+{
+  "_name_or_path": "dmis-lab/biobert-v1.1",
+  "architectures": [
+    "BertForSequenceClassification"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "id2label": {
+    "0": "marker/mechanism",
+    "1": "therapeutic",
+    "2": "unrelated"
+  },
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "label2id": {
+    "marker/mechanism": 0,
+    "therapeutic": 1,
+    "unrelated": 2
+  },
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "problem_type": "single_label_classification",
+  "torch_dtype": "float32",
+  "transformers_version": "4.35.2",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 28996
+}

model.safetensors

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+size 433273844

runs/Feb20_12-10-12_c4b3172af64f/events.out.tfevents.1708431013.c4b3172af64f.299.0

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special_tokens_map.json

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+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

tokenizer_config.json

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+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "100": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "101": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
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+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": false,
+  "mask_token": "[MASK]",
+  "model_max_length": 512,
+  "never_split": null,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

training_args.bin

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