Update README.md

README.md

@@ -12,139 +12,275 @@ We fine-tuned our base model on the Ca dataset.
 ## Metrics
 seqeval entity-wise in evaulate
 _train_AVGf1 0.9756326545937595
+
 _train_DIAGNOSIS.avg_tokens_per_entity 6.812357501139991
+
 _train_DIAGNOSIS.entity_count 8772
+
 _train_DIAGNOSIS.f1 0.9847202499289974
+
 _train_DIAGNOSIS.precision 0.9813200498132005
+
 _train_DIAGNOSIS.recall 0.9881440948472412
+
 _train_DIAGNOSIS.token_count 59758
+
 _train_DIAGNOSTIC.avg_tokens_per_entity 5.99338106173173
+
 _train_DIAGNOSTIC.entity_count 7403
+
 _train_DIAGNOSTIC.f1 0.9729585006693441
+
 _train_DIAGNOSTIC.precision 0.9643094069258326
+
 _train_DIAGNOSTIC.recall 0.9817641496690531
+
 _train_DIAGNOSTIC.token_count 44369
+
 _train_DRUG.avg_tokens_per_entity 3.8747056052755533
+
 _train_DRUG.entity_count 4246
+
 _train_DRUG.f1 0.9928328046058043
+
 _train_DRUG.precision 0.9906213364595545
+
 _train_DRUG.recall 0.9950541686292982
+
 _train_DRUG.token_count 16452
+
 _train_MEDICAL_FINDING.avg_tokens_per_entity 8.822587975587586
+
 _train_MEDICAL_FINDING.entity_count 30804
+
 _train_MEDICAL_FINDING.f1 0.9658010684140024
+
 _train_MEDICAL_FINDING.precision 0.9603299419071156
+
 _train_MEDICAL_FINDING.recall 0.9713348915725231
+
 _train_MEDICAL_FINDING.token_count 271771
+
 _train_THERAPY.avg_tokens_per_entity 8.560322448421916
+
 _train_THERAPY.entity_count 7319
+
 _train_THERAPY.f1 0.9618506493506493
+
 _train_THERAPY.precision 0.9524447421299397
+
 _train_THERAPY.recall 0.9714441863642574
+
 _train_THERAPY.token_count 62653
+
 _train_accuracy 0.9938551197147224
+
 _train_f1 0.9709934550640488
+
 _train_loss 0.020609384402632713
+
 _train_precision 0.9651517964122382
+
 _train_recall 0.9769062585405849
+
 _train_runtime 142.8691
+
 _train_samples_per_second 229.063
+
 _train_steps_per_second 28.635
+
 eval_AVGf1 0.7889642398534424
+
 eval_DIAGNOSIS.avg_len 6.790370685982105
+
 eval_DIAGNOSIS.avg_tokens_per_entity 6.790370685982105
+
 eval_DIAGNOSIS.count 2347
+
 eval_DIAGNOSIS.entity_count 2347
+
 eval_DIAGNOSIS.f1 0.7870941224825319
+
 eval_DIAGNOSIS.precision 0.760222310440651
+
 eval_DIAGNOSIS.recall 0.815935236472092
+
 eval_DIAGNOSIS.token_count 15937
+
 eval_DIAGNOSTIC.avg_len 6.030130756111427
+
 eval_DIAGNOSTIC.avg_tokens_per_entity 6.030130756111427
+
 eval_DIAGNOSTIC.count 1759
+
 eval_DIAGNOSTIC.entity_count 1759
+
 eval_DIAGNOSTIC.f1 0.7870518994114499
+
 eval_DIAGNOSTIC.precision 0.7433046993431026
+
 eval_DIAGNOSTIC.recall 0.8362706083001705
+
 eval_DIAGNOSTIC.token_count 10607
+
 eval_DRUG.avg_len 3.9235500878734624
+
 eval_DRUG.avg_tokens_per_entity 3.9235500878734624
+
 eval_DRUG.count 1138
+
 eval_DRUG.entity_count 1138
+
 eval_DRUG.f1 0.9196581196581196
+
 eval_DRUG.precision 0.8951747088186356
+
 eval_DRUG.recall 0.945518453427065
+
 eval_DRUG.token_count 4465
+
 eval_MEDICAL_FINDING.avg_len 8.781120867768594
+
 eval_MEDICAL_FINDING.avg_tokens_per_entity 8.781120867768594
+
 eval_MEDICAL_FINDING.count 7744
+
 eval_MEDICAL_FINDING.entity_count 7744
+
 eval_MEDICAL_FINDING.f1 0.7699975080986794
+
 eval_MEDICAL_FINDING.precision 0.7438613384689456
+
 eval_MEDICAL_FINDING.recall 0.7980371900826446
+
 eval_MEDICAL_FINDING.token_count 68001
+
 eval_THERAPY.avg_len 8.44420941300899
+
 eval_THERAPY.avg_tokens_per_entity 8.44420941300899
+
 eval_THERAPY.count 1891
+
 eval_THERAPY.entity_count 1891
+
 eval_THERAPY.f1 0.6810195496164316
+
 eval_THERAPY.precision 0.64
+
 eval_THERAPY.recall 0.7276573241671074
+
 eval_THERAPY.token_count 15968
+
 eval_accuracy 0.9332097564796261
+
 eval_f1 0.7744305184135064
+
 eval_loss 0.5050501823425293
+
 eval_precision 0.7437801708132195
+
 eval_recall 0.8077155722830835
+
 eval_runtime 36.8437
+
 eval_samples_per_second 222.073
+
 eval_steps_per_second 27.766
+
 test_AVGf1 0.7491200818619402
+
 test_DIAGNOSIS.avg_len 7.408243727598566
+
 test_DIAGNOSIS.avg_tokens_per_entity 7.408243727598566
+
 test_DIAGNOSIS.count 2790
+
 test_DIAGNOSIS.entity_count 2790
+
 test_DIAGNOSIS.f1 0.703534151254349
+
 test_DIAGNOSIS.precision 0.7192062897791089
+
 test_DIAGNOSIS.recall 0.6885304659498208
+
 test_DIAGNOSIS.token_count 20669
+
 test_DIAGNOSTIC.avg_len 6.136954503249767
+
 test_DIAGNOSTIC.avg_tokens_per_entity 6.136954503249767
+
 test_DIAGNOSTIC.count 2154
+
 test_DIAGNOSTIC.entity_count 2154
+
 test_DIAGNOSTIC.f1 0.7718579234972678
+
 test_DIAGNOSTIC.precision 0.7573726541554959
+
 test_DIAGNOSTIC.recall 0.786908077994429
+
 test_DIAGNOSTIC.token_count 13219
+
 test_DRUG.avg_len 3.7937931034482757
+
 test_DRUG.avg_tokens_per_entity 3.7937931034482757
+
 test_DRUG.count 1450
+
 test_DRUG.entity_count 1450
+
 test_DRUG.f1 0.9024472008045592
+
 test_DRUG.precision 0.878016960208741
+
 test_DRUG.recall 0.9282758620689655
+
 test_DRUG.token_count 5501
+
 test_MEDICAL_FINDING.avg_len 9.53191489361702
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 test_MEDICAL_FINDING.avg_tokens_per_entity 9.53191489361702
+
 test_MEDICAL_FINDING.count 8366
+
 test_MEDICAL_FINDING.entity_count 8366
+
 test_MEDICAL_FINDING.f1 0.7280362842264404
+
 test_MEDICAL_FINDING.precision 0.6848203939745076
+
 test_MEDICAL_FINDING.recall 0.7770738704279225
+
 test_MEDICAL_FINDING.token_count 79744
+
 test_THERAPY.avg_len 8.884771802982376
+
 test_THERAPY.avg_tokens_per_entity 8.884771802982376
+
 test_THERAPY.count 2213
+
 test_THERAPY.entity_count 2213
+
 test_THERAPY.f1 0.639724849527085
+
 test_THERAPY.precision 0.6100861008610086
+
 test_THERAPY.recall 0.6723904202440126
+
 test_THERAPY.token_count 19662
+
 test_accuracy 0.9229989726085077
+
 test_f1 0.7327920332701502
+
 test_loss 0.6381183862686157
+
 test_precision 0.7048546859693045
+
 test_recall 0.7630354091792847
+
 test_runtime 42.7477
+
 test_samples_per_second 221.977
-test_steps_per_second 27.768
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+test_steps_per_second 27.768