Commit
·
a81fbfe
1
Parent(s):
fc29af3
Training in progress, step 500
Browse files- .gitignore +1 -0
- config.json +26 -0
- pytorch_model.bin +3 -0
- runs/Apr28_19-31-49_a2c09e058ed0/1682710366.2722716/events.out.tfevents.1682710366.a2c09e058ed0.3363.1 +3 -0
- runs/Apr28_19-31-49_a2c09e058ed0/events.out.tfevents.1682710366.a2c09e058ed0.3363.0 +3 -0
- runs/Apr28_19-36-42_a2c09e058ed0/1682710615.8630085/events.out.tfevents.1682710615.a2c09e058ed0.5119.1 +3 -0
- runs/Apr28_19-36-42_a2c09e058ed0/1682710638.8357685/events.out.tfevents.1682710638.a2c09e058ed0.5119.2 +3 -0
- runs/Apr28_19-36-42_a2c09e058ed0/events.out.tfevents.1682710615.a2c09e058ed0.5119.0 +3 -0
- runs/Apr28_19-38-28_a2c09e058ed0/1682710725.5104136/events.out.tfevents.1682710725.a2c09e058ed0.5119.4 +3 -0
- runs/Apr28_19-38-28_a2c09e058ed0/events.out.tfevents.1682710725.a2c09e058ed0.5119.3 +3 -0
- runs/Apr28_19-43-27_a2c09e058ed0/1682711021.8858526/events.out.tfevents.1682711021.a2c09e058ed0.7036.1 +3 -0
- runs/Apr28_19-43-27_a2c09e058ed0/events.out.tfevents.1682711021.a2c09e058ed0.7036.0 +3 -0
- special_tokens_map.json +7 -0
- tokenizer.json +0 -0
- tokenizer_config.json +15 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
.gitignore
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checkpoint-*/
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config.json
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{
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"_name_or_path": "michiyasunaga/BioLinkBERT-large",
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"architectures": [
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"BertForMaskedLM"
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],
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"gradient_checkpointing": false,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 1024,
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"initializer_range": 0.02,
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"intermediate_size": 4096,
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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"model_type": "bert",
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"num_attention_heads": 16,
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"num_hidden_layers": 24,
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"torch_dtype": "float32",
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"transformers_version": "4.28.1",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 28895
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}
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pytorch_model.bin
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special_tokens_map.json
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{
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"cls_token": "[CLS]",
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"mask_token": "[MASK]",
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"pad_token": "[PAD]",
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"sep_token": "[SEP]",
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"unk_token": "[UNK]"
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}
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tokenizer.json
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tokenizer_config.json
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{
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"clean_up_tokenization_spaces": true,
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"cls_token": "[CLS]",
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"do_basic_tokenize": true,
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"do_lower_case": true,
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"mask_token": "[MASK]",
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"model_max_length": 1000000000000000019884624838656,
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"never_split": null,
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"pad_token": "[PAD]",
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"sep_token": "[SEP]",
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"strip_accents": null,
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"tokenize_chinese_chars": true,
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"tokenizer_class": "BertTokenizer",
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"unk_token": "[UNK]"
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}
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training_args.bin
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version https://git-lfs.github.com/spec/v1
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size 3579
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vocab.txt
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