JavierSanzCruza commited on
Commit
1adc7a5
1 Parent(s): addde5c

Training in progress, epoch 1

Browse files
model.safetensors CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:9b01ad580019923a502950e248eb87595b2393f24cd36ce13c0d0be24dcd6715
3
  size 437967876
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4801b0ba0c4e1050d4ff4374e1018be3f68bba1426bfe61889c2c2ad508cc779
3
  size 437967876
run-0/checkpoint-8/config.json ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_name_or_path": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract",
3
+ "architectures": [
4
+ "BertForSequenceClassification"
5
+ ],
6
+ "attention_probs_dropout_prob": 0.1,
7
+ "classifier_dropout": null,
8
+ "hidden_act": "gelu",
9
+ "hidden_dropout_prob": 0.1,
10
+ "hidden_size": 768,
11
+ "id2label": {
12
+ "0": "LABEL_0",
13
+ "1": "LABEL_1",
14
+ "2": "LABEL_2",
15
+ "3": "LABEL_3",
16
+ "4": "LABEL_4"
17
+ },
18
+ "initializer_range": 0.02,
19
+ "intermediate_size": 3072,
20
+ "label2id": {
21
+ "LABEL_0": 0,
22
+ "LABEL_1": 1,
23
+ "LABEL_2": 2,
24
+ "LABEL_3": 3,
25
+ "LABEL_4": 4
26
+ },
27
+ "layer_norm_eps": 1e-12,
28
+ "max_position_embeddings": 512,
29
+ "model_type": "bert",
30
+ "num_attention_heads": 12,
31
+ "num_hidden_layers": 12,
32
+ "pad_token_id": 0,
33
+ "position_embedding_type": "absolute",
34
+ "problem_type": "single_label_classification",
35
+ "torch_dtype": "float32",
36
+ "transformers_version": "4.36.2",
37
+ "type_vocab_size": 2,
38
+ "use_cache": true,
39
+ "vocab_size": 30522
40
+ }
run-0/checkpoint-8/model.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ef46b9da63c498a8dc38ac73691c69954a0ed75009b6d101b29d7cf68f7872df
3
+ size 437967876
run-0/checkpoint-8/optimizer.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:04c698b1129f3b43bbfaac01d6e2aa181eabd6df4dc445a21fc00809ecd2b9b1
3
+ size 876056826
run-0/checkpoint-8/rng_state.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:db26cb2ec009a530d16210c975fce34b9d6f71ab5bd86b860d34cc1eab835b43
3
+ size 14308
run-0/checkpoint-8/scheduler.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:ca1133bc855b51035aeb629f3f51e0019b54e9d914ab663d43fe155723c34f8a
3
+ size 1064
run-0/checkpoint-8/special_tokens_map.json ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ {
2
+ "cls_token": "[CLS]",
3
+ "mask_token": "[MASK]",
4
+ "pad_token": "[PAD]",
5
+ "sep_token": "[SEP]",
6
+ "unk_token": "[UNK]"
7
+ }
run-0/checkpoint-8/tokenizer.json ADDED
The diff for this file is too large to render. See raw diff
 
run-0/checkpoint-8/tokenizer_config.json ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "added_tokens_decoder": {
3
+ "0": {
4
+ "content": "[PAD]",
5
+ "lstrip": false,
6
+ "normalized": false,
7
+ "rstrip": false,
8
+ "single_word": false,
9
+ "special": true
10
+ },
11
+ "1": {
12
+ "content": "[UNK]",
13
+ "lstrip": false,
14
+ "normalized": false,
15
+ "rstrip": false,
16
+ "single_word": false,
17
+ "special": true
18
+ },
19
+ "2": {
20
+ "content": "[CLS]",
21
+ "lstrip": false,
22
+ "normalized": false,
23
+ "rstrip": false,
24
+ "single_word": false,
25
+ "special": true
26
+ },
27
+ "3": {
28
+ "content": "[SEP]",
29
+ "lstrip": false,
30
+ "normalized": false,
31
+ "rstrip": false,
32
+ "single_word": false,
33
+ "special": true
34
+ },
35
+ "4": {
36
+ "content": "[MASK]",
37
+ "lstrip": false,
38
+ "normalized": false,
39
+ "rstrip": false,
40
+ "single_word": false,
41
+ "special": true
42
+ }
43
+ },
44
+ "clean_up_tokenization_spaces": true,
45
+ "cls_token": "[CLS]",
46
+ "do_basic_tokenize": true,
47
+ "do_lower_case": true,
48
+ "mask_token": "[MASK]",
49
+ "model_max_length": 1000000000000000019884624838656,
50
+ "never_split": null,
51
+ "pad_token": "[PAD]",
52
+ "sep_token": "[SEP]",
53
+ "strip_accents": null,
54
+ "tokenize_chinese_chars": true,
55
+ "tokenizer_class": "BertTokenizer",
56
+ "unk_token": "[UNK]"
57
+ }
run-0/checkpoint-8/trainer_state.json ADDED
@@ -0,0 +1,44 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "best_metric": 0.5168831168831168,
3
+ "best_model_checkpoint": "BiomedNLP-CIViC-evidence-level-finetuned/run-0/checkpoint-8",
4
+ "epoch": 2.0,
5
+ "eval_steps": 500,
6
+ "global_step": 8,
7
+ "is_hyper_param_search": true,
8
+ "is_local_process_zero": true,
9
+ "is_world_process_zero": true,
10
+ "log_history": [
11
+ {
12
+ "epoch": 1.0,
13
+ "eval_f1": 0.5012987012987012,
14
+ "eval_loss": 1.4629722833633423,
15
+ "eval_runtime": 3.0243,
16
+ "eval_samples_per_second": 127.303,
17
+ "eval_steps_per_second": 8.266,
18
+ "step": 4
19
+ },
20
+ {
21
+ "epoch": 2.0,
22
+ "eval_f1": 0.5168831168831168,
23
+ "eval_loss": 1.4271818399429321,
24
+ "eval_runtime": 3.083,
25
+ "eval_samples_per_second": 124.878,
26
+ "eval_steps_per_second": 8.109,
27
+ "step": 8
28
+ }
29
+ ],
30
+ "logging_steps": 500,
31
+ "max_steps": 8,
32
+ "num_input_tokens_seen": 0,
33
+ "num_train_epochs": 2,
34
+ "save_steps": 500,
35
+ "total_flos": 0,
36
+ "train_batch_size": 32,
37
+ "trial_name": null,
38
+ "trial_params": {
39
+ "learning_rate": 2.8393438396163414e-06,
40
+ "num_train_epochs": 2,
41
+ "per_device_train_batch_size": 32,
42
+ "seed": 13
43
+ }
44
+ }
run-0/checkpoint-8/training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5e596f388cb2b7e0d8e354607f2283aafb814732c6ae1ac8514e2f2ff4c3ec13
3
+ size 4728
run-0/checkpoint-8/vocab.txt ADDED
The diff for this file is too large to render. See raw diff
 
run-1/checkpoint-29/config.json ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "_name_or_path": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract",
3
+ "architectures": [
4
+ "BertForSequenceClassification"
5
+ ],
6
+ "attention_probs_dropout_prob": 0.1,
7
+ "classifier_dropout": null,
8
+ "hidden_act": "gelu",
9
+ "hidden_dropout_prob": 0.1,
10
+ "hidden_size": 768,
11
+ "id2label": {
12
+ "0": "LABEL_0",
13
+ "1": "LABEL_1",
14
+ "2": "LABEL_2",
15
+ "3": "LABEL_3",
16
+ "4": "LABEL_4"
17
+ },
18
+ "initializer_range": 0.02,
19
+ "intermediate_size": 3072,
20
+ "label2id": {
21
+ "LABEL_0": 0,
22
+ "LABEL_1": 1,
23
+ "LABEL_2": 2,
24
+ "LABEL_3": 3,
25
+ "LABEL_4": 4
26
+ },
27
+ "layer_norm_eps": 1e-12,
28
+ "max_position_embeddings": 512,
29
+ "model_type": "bert",
30
+ "num_attention_heads": 12,
31
+ "num_hidden_layers": 12,
32
+ "pad_token_id": 0,
33
+ "position_embedding_type": "absolute",
34
+ "problem_type": "single_label_classification",
35
+ "torch_dtype": "float32",
36
+ "transformers_version": "4.36.2",
37
+ "type_vocab_size": 2,
38
+ "use_cache": true,
39
+ "vocab_size": 30522
40
+ }
run-1/checkpoint-29/model.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:4801b0ba0c4e1050d4ff4374e1018be3f68bba1426bfe61889c2c2ad508cc779
3
+ size 437967876
run-1/checkpoint-29/optimizer.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d85f564d1956218cd2c3d400a27f02699240333bfacee5ee0588911a4bd8a153
3
+ size 876056826
run-1/checkpoint-29/rng_state.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:6d37fd0a81d239d08ec687808c7b066c2e0f6eddc611ebfa89ff29192c9ca6c0
3
+ size 14244
run-1/checkpoint-29/scheduler.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b050a81c951e04383baacbde88f713592b7cfbe99f30cea9de091b19d681a5f9
3
+ size 1064
run-1/checkpoint-29/special_tokens_map.json ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ {
2
+ "cls_token": "[CLS]",
3
+ "mask_token": "[MASK]",
4
+ "pad_token": "[PAD]",
5
+ "sep_token": "[SEP]",
6
+ "unk_token": "[UNK]"
7
+ }
run-1/checkpoint-29/tokenizer.json ADDED
The diff for this file is too large to render. See raw diff
 
run-1/checkpoint-29/tokenizer_config.json ADDED
@@ -0,0 +1,57 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "added_tokens_decoder": {
3
+ "0": {
4
+ "content": "[PAD]",
5
+ "lstrip": false,
6
+ "normalized": false,
7
+ "rstrip": false,
8
+ "single_word": false,
9
+ "special": true
10
+ },
11
+ "1": {
12
+ "content": "[UNK]",
13
+ "lstrip": false,
14
+ "normalized": false,
15
+ "rstrip": false,
16
+ "single_word": false,
17
+ "special": true
18
+ },
19
+ "2": {
20
+ "content": "[CLS]",
21
+ "lstrip": false,
22
+ "normalized": false,
23
+ "rstrip": false,
24
+ "single_word": false,
25
+ "special": true
26
+ },
27
+ "3": {
28
+ "content": "[SEP]",
29
+ "lstrip": false,
30
+ "normalized": false,
31
+ "rstrip": false,
32
+ "single_word": false,
33
+ "special": true
34
+ },
35
+ "4": {
36
+ "content": "[MASK]",
37
+ "lstrip": false,
38
+ "normalized": false,
39
+ "rstrip": false,
40
+ "single_word": false,
41
+ "special": true
42
+ }
43
+ },
44
+ "clean_up_tokenization_spaces": true,
45
+ "cls_token": "[CLS]",
46
+ "do_basic_tokenize": true,
47
+ "do_lower_case": true,
48
+ "mask_token": "[MASK]",
49
+ "model_max_length": 1000000000000000019884624838656,
50
+ "never_split": null,
51
+ "pad_token": "[PAD]",
52
+ "sep_token": "[SEP]",
53
+ "strip_accents": null,
54
+ "tokenize_chinese_chars": true,
55
+ "tokenizer_class": "BertTokenizer",
56
+ "unk_token": "[UNK]"
57
+ }
run-1/checkpoint-29/trainer_state.json ADDED
@@ -0,0 +1,35 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "best_metric": 0.522077922077922,
3
+ "best_model_checkpoint": "BiomedNLP-CIViC-evidence-level-finetuned/run-1/checkpoint-29",
4
+ "epoch": 1.0,
5
+ "eval_steps": 500,
6
+ "global_step": 29,
7
+ "is_hyper_param_search": true,
8
+ "is_local_process_zero": true,
9
+ "is_world_process_zero": true,
10
+ "log_history": [
11
+ {
12
+ "epoch": 1.0,
13
+ "eval_f1": 0.522077922077922,
14
+ "eval_loss": 1.2884207963943481,
15
+ "eval_runtime": 3.0292,
16
+ "eval_samples_per_second": 127.098,
17
+ "eval_steps_per_second": 8.253,
18
+ "step": 29
19
+ }
20
+ ],
21
+ "logging_steps": 500,
22
+ "max_steps": 58,
23
+ "num_input_tokens_seen": 0,
24
+ "num_train_epochs": 2,
25
+ "save_steps": 500,
26
+ "total_flos": 0,
27
+ "train_batch_size": 4,
28
+ "trial_name": null,
29
+ "trial_params": {
30
+ "learning_rate": 2.0420821448422454e-06,
31
+ "num_train_epochs": 2,
32
+ "per_device_train_batch_size": 4,
33
+ "seed": 34
34
+ }
35
+ }
run-1/checkpoint-29/training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:432a1e1ca3b92c840b63624f39979bb3987e33f14add64eb46eb55fded5c3c84
3
+ size 4728
run-1/checkpoint-29/vocab.txt ADDED
The diff for this file is too large to render. See raw diff
 
training_args.bin CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:5e596f388cb2b7e0d8e354607f2283aafb814732c6ae1ac8514e2f2ff4c3ec13
3
  size 4728
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:432a1e1ca3b92c840b63624f39979bb3987e33f14add64eb46eb55fded5c3c84
3
  size 4728