Training in progress, epoch 1

config.json

@@ -1,49 +1,35 @@
 {
   "_name_or_path": "microsoft/biogpt",
   "activation_dropout": 0.0,
-  "activation_function": "gelu_new",
   "architectures": [
-    "GPT2ForTokenClassification"
+    "BioGptForTokenClassification"
   ],
   "attention_probs_dropout_prob": 0.1,
-  "attn_pdrop": 0.1,
   "bos_token_id": 0,
-  "embd_pdrop": 0.1,
   "eos_token_id": 2,
   "hidden_act": "gelu",
   "hidden_dropout_prob": 0.1,
+  "hidden_size": 1024,
   "id2label": {
-    "0": "LABEL_0",
-    "1": "LABEL_1",
-    "2": "LABEL_2"
+    "0": "O",
+    "1": "B-Disease",
+    "2": "I-Disease"
   },
   "initializer_range": 0.02,
   "intermediate_size": 4096,
   "label2id": {
-    "LABEL_0": 0,
-    "LABEL_1": 1,
-    "LABEL_2": 2
+    "B-Disease": 1,
+    "I-Disease": 2,
+    "O": 0
   },
   "layer_norm_eps": 1e-12,
-  "layer_norm_epsilon": 1e-05,
   "layerdrop": 0.0,
-  "model_type": "gpt2",
-  "n_embd": 1024,
-  "n_head": 16,
-  "n_inner": null,
-  "n_layer": 24,
-  "n_positions": 1024,
+  "max_position_embeddings": 1024,
+  "model_type": "biogpt",
+  "num_attention_heads": 16,
+  "num_hidden_layers": 24,
   "pad_token_id": 1,
-  "reorder_and_upcast_attn": false,
-  "resid_pdrop": 0.1,
-  "scale_attn_by_inverse_layer_idx": false,
-  "scale_attn_weights": true,
   "scale_embedding": true,
-  "summary_activation": null,
-  "summary_first_dropout": 0.1,
-  "summary_proj_to_labels": true,
-  "summary_type": "cls_index",
-  "summary_use_proj": true,
   "torch_dtype": "float32",
   "transformers_version": "4.38.2",
   "use_cache": true,

model.safetensors

@@ -1,3 +1,3 @@
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+size 1387108052

runs/Apr11_20-53-16_d35aba3a0ae4/events.out.tfevents.1712868797.d35aba3a0ae4.5070.0

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runs/Apr11_20-55-29_d35aba3a0ae4/events.out.tfevents.1712868930.d35aba3a0ae4.5070.1

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training_args.bin

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