Upload 13 files
Browse files- README.md +71 -1
- added_tokens.json +10 -0
- all_results.json +15 -0
- config.json +39 -0
- eval_results.json +10 -0
- model.safetensors +3 -0
- special_tokens_map.json +17 -0
- tokenizer.json +0 -0
- tokenizer_config.json +132 -0
- train_results.json +8 -0
- trainer_state.json +130 -0
- training_args.bin +3 -0
- vocab.txt +0 -0
README.md
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---
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-
license:
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---
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---
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license: mit
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base_model: microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract
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tags:
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- generated_from_trainer
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metrics:
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- accuracy
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- f1
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model-index:
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- name: test
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results: []
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# test
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This model is a fine-tuned version of [microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract](https://huggingface.co/microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract) on an unknown dataset.
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It achieves the following results on the evaluation set:
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- Loss: 0.6886
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- Accuracy: 0.8143
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- F1: [0.92816572 0.56028369 0.1 0.2633452 ]
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 2e-05
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- train_batch_size: 32
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- eval_batch_size: 64
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- seed: 42
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- gradient_accumulation_steps: 2
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- total_train_batch_size: 64
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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- lr_scheduler_type: cosine
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- num_epochs: 10.0
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### Training results
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| Training Loss | Epoch | Step | Validation Loss | Accuracy | F1 |
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|:-------------:|:-----:|:----:|:---------------:|:--------:|:---------------------------------------------:|
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| No log | 1.0 | 37 | 0.4891 | 0.8235 | [0.91702786 0.33333333 0. 0.10837438] |
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| No log | 2.0 | 74 | 0.4762 | 0.8321 | [0.93139159 0.48466258 0. 0.22857143] |
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| No log | 3.0 | 111 | 0.5084 | 0.8208 | [0.92995725 0.44887781 0. 0.19266055] |
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| No log | 4.0 | 148 | 0.5519 | 0.8105 | [0.92421691 0.44444444 0.06557377 0.30769231] |
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| No log | 5.0 | 185 | 0.5805 | 0.8294 | [0.93531353 0.52336449 0.09345794 0.27131783] |
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| No log | 6.0 | 222 | 0.6778 | 0.7955 | [0.91344509 0.55305466 0.15463918 0.29166667] |
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| No log | 7.0 | 259 | 0.6407 | 0.8213 | [0.93298292 0.51383399 0.10191083 0.2519084 ] |
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| No log | 8.0 | 296 | 0.6639 | 0.8272 | [0.9326288 0.55052265 0.18181818 0.26271186] |
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| No log | 9.0 | 333 | 0.6863 | 0.8192 | [0.93071286 0.55830389 0.11042945 0.2761194 ] |
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| No log | 10.0 | 370 | 0.6886 | 0.8143 | [0.92816572 0.56028369 0.1 0.2633452 ] |
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### Framework versions
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- Transformers 4.37.2
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- Pytorch 2.2.0+cu121
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- Datasets 2.17.0
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- Tokenizers 0.15.2
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added_tokens.json
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{
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"</a1>": 28898,
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"</a2>": 28900,
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"</e>": 28896,
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"<a1>": 28897,
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"<a2>": 28899,
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"<cr>": 28901,
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"<e>": 28895,
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"<neg>": 28902
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}
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all_results.json
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{
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"epoch": 10.0,
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"eval_accuracy": 0.81431645154953,
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"eval_f1": "[0.92816572 0.56028369 0.1 0.2633452 ]",
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"eval_loss": 0.6886363625526428,
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"eval_runtime": 7.7747,
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"eval_samples": 1858,
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"eval_samples_per_second": 238.981,
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"eval_steps_per_second": 3.859,
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"train_loss": 0.21409231649862753,
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"train_runtime": 515.9059,
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"train_samples": 2338,
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"train_samples_per_second": 45.318,
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"train_steps_per_second": 0.717
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}
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config.json
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{
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"_name_or_path": "microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract",
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"architectures": [
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"BertForSequenceClassification"
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],
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"id2label": {
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"0": "ACTUAL",
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"1": "GENERIC",
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"2": "HEDGED",
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"3": "HYPOTHETICAL"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"label2id": {
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"ACTUAL": 0,
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"GENERIC": 1,
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"HEDGED": 2,
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"HYPOTHETICAL": 3
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},
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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"model_type": "bert",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"problem_type": "single_label_classification",
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"torch_dtype": "float32",
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"transformers_version": "4.37.2",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 28903
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}
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eval_results.json
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{
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"epoch": 10.0,
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"eval_accuracy": 0.81431645154953,
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"eval_f1": "[0.92816572 0.56028369 0.1 0.2633452 ]",
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"eval_loss": 0.6886363625526428,
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"eval_runtime": 7.7747,
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"eval_samples": 1858,
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"eval_samples_per_second": 238.981,
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"eval_steps_per_second": 3.859
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:370ff03698c998c3a98bfc5eb64053f4046eab460b116a97207506145bbec52c
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size 432991216
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special_tokens_map.json
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{
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"additional_special_tokens": [
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"<e>",
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"</e>",
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"<a1>",
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"</a1>",
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"<a2>",
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"</a2>",
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"<cr>",
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"<neg>"
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],
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"cls_token": "[CLS]",
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"mask_token": "[MASK]",
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"pad_token": "[PAD]",
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"sep_token": "[SEP]",
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"unk_token": "[UNK]"
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}
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tokenizer.json
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tokenizer_config.json
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{
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"add_prefix_space": true,
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}
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},
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],
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training_args.bin
ADDED
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vocab.txt
ADDED
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