venv/lib/python3.12/site-packages/fsspec/implementations/github.py

import base64
import re

import requests

from ..spec import AbstractFileSystem
from ..utils import infer_storage_options
from .memory import MemoryFile


class GithubFileSystem(AbstractFileSystem):
    """Interface to files in github

    An instance of this class provides the files residing within a remote github
    repository. You may specify a point in the repos history, by SHA, branch
    or tag (default is current master).

    For files less than 1 MB in size, file content is returned directly in a
    MemoryFile. For larger files, or for files tracked by git-lfs, file content
    is returned as an HTTPFile wrapping the ``download_url`` provided by the
    GitHub API.

    When using fsspec.open, allows URIs of the form:

    - "github://path/file", in which case you must specify org, repo and
      may specify sha in the extra args
    - 'github://org:repo@/precip/catalog.yml', where the org and repo are
      part of the URI
    - 'github://org:repo@sha/precip/catalog.yml', where the sha is also included

    ``sha`` can be the full or abbreviated hex of the commit you want to fetch
    from, or a branch or tag name (so long as it doesn't contain special characters
    like "/", "?", which would have to be HTTP-encoded).

    For authorised access, you must provide username and token, which can be made
    at https://github.com/settings/tokens
    """

    url = "https://api.github.com/repos/{org}/{repo}/git/trees/{sha}"
    content_url = "https://api.github.com/repos/{org}/{repo}/contents/{path}?ref={sha}"
    protocol = "github"
    timeout = (60, 60)  # connect, read timeouts

    def __init__(
        self, org, repo, sha=None, username=None, token=None, timeout=None, **kwargs
    ):
        super().__init__(**kwargs)
        self.org = org
        self.repo = repo
        if (username is None) ^ (token is None):
            raise ValueError("Auth required both username and token")
        self.username = username
        self.token = token
        if timeout is not None:
            self.timeout = timeout
        if sha is None:
            # look up default branch (not necessarily "master")
            u = "https://api.github.com/repos/{org}/{repo}"
            r = requests.get(
                u.format(org=org, repo=repo), timeout=self.timeout, **self.kw
            )
            r.raise_for_status()
            sha = r.json()["default_branch"]

        self.root = sha
        self.ls("")
        try:
            from .http import HTTPFileSystem

            self.http_fs = HTTPFileSystem(**kwargs)
        except ImportError:
            self.http_fs = None

    @property
    def kw(self):
        if self.username:
            return {"auth": (self.username, self.token)}
        return {}

    @classmethod
    def repos(cls, org_or_user, is_org=True):
        """List repo names for given org or user

        This may become the top level of the FS

        Parameters
        ----------
        org_or_user: str
            Name of the github org or user to query
        is_org: bool (default True)
            Whether the name is an organisation (True) or user (False)

        Returns
        -------
        List of string
        """
        r = requests.get(
            f"https://api.github.com/{['users', 'orgs'][is_org]}/{org_or_user}/repos",
            timeout=cls.timeout,
        )
        r.raise_for_status()
        return [repo["name"] for repo in r.json()]

    @property
    def tags(self):
        """Names of tags in the repo"""
        r = requests.get(
            f"https://api.github.com/repos/{self.org}/{self.repo}/tags",
            timeout=self.timeout,
            **self.kw,
        )
        r.raise_for_status()
        return [t["name"] for t in r.json()]

    @property
    def branches(self):
        """Names of branches in the repo"""
        r = requests.get(
            f"https://api.github.com/repos/{self.org}/{self.repo}/branches",
            timeout=self.timeout,
            **self.kw,
        )
        r.raise_for_status()
        return [t["name"] for t in r.json()]

    @property
    def refs(self):
        """Named references, tags and branches"""
        return {"tags": self.tags, "branches": self.branches}

    def ls(self, path, detail=False, sha=None, _sha=None, **kwargs):
        """List files at given path

        Parameters
        ----------
        path: str
            Location to list, relative to repo root
        detail: bool
            If True, returns list of dicts, one per file; if False, returns
            list of full filenames only
        sha: str (optional)
            List at the given point in the repo history, branch or tag name or commit
            SHA
        _sha: str (optional)
            List this specific tree object (used internally to descend into trees)
        """
        path = self._strip_protocol(path)
        if path == "":
            _sha = sha or self.root
        if _sha is None:
            parts = path.rstrip("/").split("/")
            so_far = ""
            _sha = sha or self.root
            for part in parts:
                out = self.ls(so_far, True, sha=sha, _sha=_sha)
                so_far += "/" + part if so_far else part
                out = [o for o in out if o["name"] == so_far]
                if not out:
                    raise FileNotFoundError(path)
                out = out[0]
                if out["type"] == "file":
                    if detail:
                        return [out]
                    else:
                        return path
                _sha = out["sha"]
        if path not in self.dircache or sha not in [self.root, None]:
            r = requests.get(
                self.url.format(org=self.org, repo=self.repo, sha=_sha),
                timeout=self.timeout,
                **self.kw,
            )
            if r.status_code == 404:
                raise FileNotFoundError(path)
            r.raise_for_status()
            types = {"blob": "file", "tree": "directory"}
            out = [
                {
                    "name": path + "/" + f["path"] if path else f["path"],
                    "mode": f["mode"],
                    "type": types[f["type"]],
                    "size": f.get("size", 0),
                    "sha": f["sha"],
                }
                for f in r.json()["tree"]
                if f["type"] in types
            ]
            if sha in [self.root, None]:
                self.dircache[path] = out
        else:
            out = self.dircache[path]
        if detail:
            return out
        else:
            return sorted([f["name"] for f in out])

    def invalidate_cache(self, path=None):
        self.dircache.clear()

    @classmethod
    def _strip_protocol(cls, path):
        opts = infer_storage_options(path)
        if "username" not in opts:
            return super()._strip_protocol(path)
        return opts["path"].lstrip("/")

    @staticmethod
    def _get_kwargs_from_urls(path):
        opts = infer_storage_options(path)
        if "username" not in opts:
            return {}
        out = {"org": opts["username"], "repo": opts["password"]}
        if opts["host"]:
            out["sha"] = opts["host"]
        return out

    def _open(
        self,
        path,
        mode="rb",
        block_size=None,
        cache_options=None,
        sha=None,
        **kwargs,
    ):
        if mode != "rb":
            raise NotImplementedError

        # construct a url to hit the GitHub API's repo contents API
        url = self.content_url.format(
            org=self.org, repo=self.repo, path=path, sha=sha or self.root
        )

        # make a request to this API, and parse the response as JSON
        r = requests.get(url, timeout=self.timeout, **self.kw)
        if r.status_code == 404:
            raise FileNotFoundError(path)
        r.raise_for_status()
        content_json = r.json()

        # if the response's content key is not empty, try to parse it as base64
        if content_json["content"]:
            content = base64.b64decode(content_json["content"])

            # as long as the content does not start with the string
            # "version https://git-lfs.github.com/"
            # then it is probably not a git-lfs pointer and we can just return
            # the content directly
            if not content.startswith(b"version https://git-lfs.github.com/"):
                return MemoryFile(None, None, content)

        # we land here if the content was not present in the first response
        # (regular file over 1MB or git-lfs tracked file)
        # in this case, we get let the HTTPFileSystem handle the download
        if self.http_fs is None:
            raise ImportError(
                "Please install fsspec[http] to access github files >1 MB "
                "or git-lfs tracked files."
            )
        return self.http_fs.open(
            content_json["download_url"],
            mode=mode,
            block_size=block_size,
            cache_options=cache_options,
            **kwargs,
        )

    def rm(self, path, recursive=False, maxdepth=None, message=None):
        path = self.expand_path(path, recursive=recursive, maxdepth=maxdepth)
        for p in reversed(path):
            self.rm_file(p, message=message)

    def rm_file(self, path, message=None, **kwargs):
        """
        Remove a file from a specified branch using a given commit message.

        Since Github DELETE operation requires a branch name, and we can't reliably
        determine whether the provided SHA refers to a branch, tag, or commit, we
        assume it's a branch. If it's not, the user will encounter an error when
        attempting to retrieve the file SHA or delete the file.

        Parameters
        ----------
        path: str
            The file's location relative to the repository root.
        message: str, optional
            The commit message for the deletion.
        """

        if not self.username:
            raise ValueError("Authentication required")

        path = self._strip_protocol(path)

        # Attempt to get SHA from cache or Github API
        sha = self._get_sha_from_cache(path)
        if not sha:
            url = self.content_url.format(
                org=self.org, repo=self.repo, path=path.lstrip("/"), sha=self.root
            )
            r = requests.get(url, timeout=self.timeout, **self.kw)
            if r.status_code == 404:
                raise FileNotFoundError(path)
            r.raise_for_status()
            sha = r.json()["sha"]

        # Delete the file
        delete_url = self.content_url.format(
            org=self.org, repo=self.repo, path=path, sha=self.root
        )
        branch = self.root
        data = {
            "message": message or f"Delete {path}",
            "sha": sha,
            **({"branch": branch} if branch else {}),
        }

        r = requests.delete(delete_url, json=data, timeout=self.timeout, **self.kw)
        error_message = r.json().get("message", "")
        if re.search(r"Branch .+ not found", error_message):
            error = "Remove only works when the filesystem is initialised from a branch or default (None)"
            raise ValueError(error)
        r.raise_for_status()

        self.invalidate_cache(path)

    def _get_sha_from_cache(self, path):
        for entries in self.dircache.values():
            for entry in entries:
                entry_path = entry.get("name")
                if entry_path and entry_path == path and "sha" in entry:
                    return entry["sha"]
        return None