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from setuptools import find_packages, setup |
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setup( |
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name='TransfoRNA', |
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version='0.0.1', |
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description='TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy', |
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url='https://github.com/gitHBDX/TransfoRNA', |
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author='YasserTaha,JuliaJehn', |
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author_email='ytaha@hb-dx.com,jjehn@hb-dx.com,tsikosek@hb-dx.com', |
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classifiers=[ |
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'Development Status :: 4 - Beta', |
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'Intended Audience :: Biological Researchers', |
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'License :: OSI Approved :: MIT License', |
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'Programming Language :: Python :: 3.9', |
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], |
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packages=find_packages(include=['transforna', 'transforna.*']), |
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install_requires=[ |
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"anndata==0.8.0", |
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"dill==0.3.6", |
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"hydra-core==1.3.0", |
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"imbalanced-learn==0.9.1", |
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"matplotlib==3.5.3", |
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"numpy==1.22.3", |
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"omegaconf==2.2.2", |
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"pandas==1.5.2", |
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"plotly==5.10.0", |
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"PyYAML==6.0", |
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"rich==12.6.0", |
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"viennarna>=2.5.0a5", |
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"scanpy==1.9.1", |
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"scikit_learn==1.2.0", |
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"skorch==0.12.1", |
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"torch==1.10.1", |
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"tensorboard==2.16.2", |
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"Levenshtein==0.21.0" |
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], |
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python_requires='>=3.9', |
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package_data={'': ['*.yaml']}, |
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) |
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