MedLang

MedLang-13B/config.json

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+{
+  "_from_model_config": true,
+  "_name_or_path": "/root/output/baichuan13b-sft-after300k-artificial-v2/final",
+  "architectures": [
+    "BaichuanForCausalLM"
+  ],
+  "auto_map": {
+    "AutoConfig": "configuration_baichuan.BaichuanConfig",
+    "AutoModelForCausalLM": "modeling_baichuan.BaichuanForCausalLM"
+  },
+  "bos_token_id": 1,
+  "eos_token_id": 2,
+  "hidden_act": "silu",
+  "hidden_size": 5120,
+  "initializer_range": 0.02,
+  "intermediate_size": 13696,
+  "model_max_length": 4096,
+  "model_type": "baichuan",
+  "num_attention_heads": 40,
+  "num_hidden_layers": 40,
+  "pad_token_id": 0,
+  "rms_norm_eps": 1e-06,
+  "tie_word_embeddings": false,
+  "torch_dtype": "bfloat16",
+  "transformers_version": "4.31.0",
+  "use_cache": true,
+  "vocab_size": 64000
+}

MedLang-13B/configuration_baichuan.py

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+# Copyright (c) 2023, Baichuan Intelligent Technology. All rights reserved.
+
+from transformers.configuration_utils import PretrainedConfig
+
+class BaichuanConfig(PretrainedConfig):
+    model_type = "baichuan"
+    keys_to_ignore_at_inference = ["past_key_values"]
+
+    def __init__(
+        self,
+        vocab_size=64000,
+        model_max_length=4096,
+        hidden_size=5120,
+        intermediate_size=13696,
+        num_hidden_layers=40,
+        num_attention_heads=40, 
+        hidden_act="silu",
+        initializer_range=0.02,
+        rms_norm_eps=1e-6,
+        use_cache=True,
+        pad_token_id=0,
+        bos_token_id=1,
+        eos_token_id=2,
+        tie_word_embeddings=False,
+        gradient_checkpointing=False,
+        **kwargs,
+    ):
+        self.vocab_size = vocab_size
+        self.model_max_length = model_max_length
+        self.hidden_size = hidden_size
+        self.intermediate_size = intermediate_size
+        self.num_hidden_layers = num_hidden_layers
+        self.num_attention_heads = num_attention_heads
+        self.hidden_act = hidden_act
+        self.initializer_range = initializer_range
+        self.rms_norm_eps = rms_norm_eps
+        self.use_cache = use_cache
+        self.gradient_checkpointing = gradient_checkpointing,
+        super().__init__(
+            pad_token_id=pad_token_id,
+            bos_token_id=bos_token_id,
+            eos_token_id=eos_token_id,
+            tie_word_embeddings=tie_word_embeddings,
+            **kwargs,
+        )
+

MedLang-13B/generation_config.json

@@ -0,0 +1,14 @@
+{
+  "assistant_token_id": 196,
+  "bos_token_id": 1,
+  "do_sample": true,
+  "eos_token_id": 2,
+  "max_new_tokens": 2048,
+  "pad_token_id": 0,
+  "repetition_penalty": 1.1,
+  "temperature": 0.3,
+  "top_k": 5,
+  "top_p": 0.85,
+  "transformers_version": "4.31.0",
+  "user_token_id": 195
+}

MedLang-13B/generation_utils.py

@@ -0,0 +1,82 @@
+from typing import List
+from queue import Queue
+
+import torch
+
+
+def build_chat_input(model, tokenizer, messages: List[dict], max_new_tokens: int=0):
+    def _parse_messages(messages, split_role="user"):
+        system, rounds = "", []
+        round = []
+        for i, message in enumerate(messages):
+            if message["role"] == "system":
+                assert i == 0
+                system = message["content"]
+                continue
+            if message["role"] == split_role and round:
+                rounds.append(round)
+                round = []
+            round.append(message)
+        if round:
+            rounds.append(round)
+        return system, rounds
+
+    max_new_tokens = max_new_tokens or model.generation_config.max_new_tokens
+    max_input_tokens = model.config.model_max_length - max_new_tokens
+    system, rounds = _parse_messages(messages, split_role="user")
+    system_tokens = tokenizer.encode(system)
+    max_history_tokens = max_input_tokens - len(system_tokens)
+
+    history_tokens = []
+    for round in rounds[::-1]:
+        round_tokens = []
+        for message in round:
+            if message["role"] == "user":
+                round_tokens.append(model.generation_config.user_token_id)
+            else:
+                round_tokens.append(model.generation_config.assistant_token_id)
+            round_tokens.extend(tokenizer.encode(message["content"]))
+        if len(history_tokens) == 0 or len(history_tokens) + len(round_tokens) <= max_history_tokens:
+            history_tokens = round_tokens + history_tokens  # concat left
+            if len(history_tokens) < max_history_tokens:
+                continue
+        break
+
+    input_tokens = system_tokens + history_tokens
+    if messages[-1]["role"] != "assistant":
+        input_tokens.append(model.generation_config.assistant_token_id)
+    input_tokens = input_tokens[-max_input_tokens:]  # truncate left
+    return torch.LongTensor([input_tokens]).to(model.device)
+
+
+class TextIterStreamer:
+    def __init__(self, tokenizer, skip_prompt=False, skip_special_tokens=False):
+        self.tokenizer = tokenizer
+        self.skip_prompt = skip_prompt
+        self.skip_special_tokens = skip_special_tokens
+        self.tokens = []
+        self.text_queue = Queue()
+        self.next_tokens_are_prompt = True
+
+    def put(self, value):
+        if self.skip_prompt and self.next_tokens_are_prompt:
+            self.next_tokens_are_prompt = False
+        else:
+            if len(value.shape) > 1:
+                value = value[0]
+            self.tokens.extend(value.tolist())
+            self.text_queue.put(
+                self.tokenizer.decode(self.tokens, skip_special_tokens=self.skip_special_tokens))
+
+    def end(self):
+        self.text_queue.put(None)
+
+    def __iter__(self):
+        return self
+
+    def __next__(self):
+        value = self.text_queue.get()
+        if value is None:
+            raise StopIteration()
+        else:
+            return value

MedLang-13B/modeling_baichuan.py

@@ -0,0 +1,572 @@
+# Copyright (c) 2023, Baichuan Intelligent Technology. All rights reserved.
+
+import math
+from threading import Thread
+from typing import List, Optional, Tuple, Union
+
+import torch
+import torch.utils.checkpoint
+from torch.nn import CrossEntropyLoss
+from transformers import PreTrainedModel
+from transformers.activations import ACT2FN
+from transformers.modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast
+from transformers.utils import logging
+from transformers.generation.utils import GenerationConfig
+
+from .configuration_baichuan import BaichuanConfig
+from .generation_utils import build_chat_input, TextIterStreamer
+
+logger = logging.get_logger(__name__)
+
+
+def _get_interleave(n):
+    def _get_interleave_power_of_2(n):
+        start = (2 ** (-2 ** -(math.log2(n) - 3)))
+        ratio = start
+        return [start * ratio ** i for i in range(n)]
+
+    if math.log2(n).is_integer():
+        return _get_interleave_power_of_2(n)
+    else:
+        closest_power_of_2 = 2 ** math.floor(math.log2(n))
+        return _get_interleave_power_of_2(closest_power_of_2) + \
+               _get_interleave(2 * closest_power_of_2)[0::2][:n - closest_power_of_2]
+
+def _fill_with_neg_inf(t):
+    """FP16-compatible function that fills a tensor with -inf."""
+    return t.float().fill_(float("-inf")).type_as(t)
+
+def _gen_alibi_mask(n_head, max_pos):
+    """used in inference only"""
+    slopes = torch.Tensor(_get_interleave(n_head))
+    alibi = slopes.unsqueeze(1).unsqueeze(1) * torch.arange(max_pos).unsqueeze(0).unsqueeze(0).expand(
+        n_head, -1, -1)
+    alibi = alibi.view(n_head, 1, max_pos)
+    alibi_mask = torch.triu(
+        _fill_with_neg_inf(torch.zeros([max_pos, max_pos])), 1
+    )
+    alibi_mask = alibi_mask.unsqueeze(0) + alibi
+    return alibi_mask
+
+def _buffered_future_mask(tensor, maxpos, alibi, attn_heads):
+    """used in training only"""
+    dim = tensor.size(1)
+    _future_mask = torch.triu(
+        _fill_with_neg_inf(torch.zeros([maxpos, maxpos])), 1
+    )   
+    _future_mask = _future_mask.unsqueeze(0) + alibi
+    _future_mask = _future_mask.to(tensor)
+    return _future_mask[:tensor.shape[0] * attn_heads, :maxpos, :maxpos]
+
+
+class RMSNorm(torch.nn.Module):
+    def __init__(self, hidden_size, epsilon=1e-6):
+        super().__init__()
+        self.weight = torch.nn.Parameter(torch.empty(hidden_size))
+        self.epsilon = epsilon
+
+    def forward(self, hidden_states):
+        variance = hidden_states.to(torch.float32).pow(2).mean(-1, keepdim=True)
+        hidden_states = hidden_states * torch.rsqrt(variance + self.epsilon)
+
+        # convert into half-precision
+        if self.weight.dtype in [torch.float16, torch.bfloat16]:
+            hidden_states = hidden_states.to(self.weight.dtype)
+
+        return self.weight * hidden_states
+
+
+class MLP(torch.nn.Module):
+    def __init__(
+            self,
+            hidden_size: int,
+            intermediate_size: int,
+            hidden_act: str,
+    ):
+        super().__init__()
+        self.gate_proj = torch.nn.Linear(hidden_size, intermediate_size, bias=False)
+        self.down_proj = torch.nn.Linear(intermediate_size, hidden_size, bias=False)
+        self.up_proj = torch.nn.Linear(hidden_size, intermediate_size, bias=False)
+        self.act_fn = ACT2FN[hidden_act]
+
+    def forward(self, x):
+        return self.down_proj(self.act_fn(self.gate_proj(x)) * self.up_proj(x))
+
+
+class BaichuanAttention(torch.nn.Module):
+    def __init__(self, config: BaichuanConfig):
+        super().__init__()
+        self.config = config
+        self.hidden_size = config.hidden_size
+        self.num_heads = config.num_attention_heads
+        self.head_dim = self.hidden_size // self.num_heads
+        self.max_position_embeddings = config.model_max_length
+
+        if (self.head_dim * self.num_heads) != self.hidden_size:
+            raise ValueError(
+                f"hidden_size {self.hidden_size} is not divisible by num_heads {self.num_heads}"
+            )
+        self.W_pack = torch.nn.Linear(self.hidden_size, 3 * self.hidden_size, bias=False)
+        self.o_proj = torch.nn.Linear(self.num_heads * self.head_dim, self.hidden_size, bias=False)
+
+    def _shape(self, tensor: torch.Tensor, seq_len: int, bsz: int):
+        return tensor.view(bsz, seq_len, self.num_heads, self.head_dim).transpose(1, 2).contiguous()
+
+    def forward(
+            self,
+            hidden_states: torch.Tensor,
+            attention_mask: Optional[torch.Tensor] = None,
+            past_key_value: Optional[Tuple[torch.Tensor]] = None,
+            output_attentions: bool = False,
+            use_cache: bool = False,
+    ) -> Tuple[torch.Tensor, Optional[torch.Tensor], Optional[Tuple[torch.Tensor]]]:
+
+        bsz, q_len, _ = hidden_states.size()
+ 
+        proj = self.W_pack(hidden_states)
+        proj = proj.unflatten(-1, (3, self.hidden_size)).unsqueeze(0).transpose(0, -2).squeeze(-2)
+        query_states = proj[0].view(bsz, q_len, self.num_heads, self.head_dim).transpose(1, 2)
+        key_states = proj[1].view(bsz, q_len, self.num_heads, self.head_dim).transpose(1, 2)
+        value_states = proj[2].view(bsz, q_len, self.num_heads, self.head_dim).transpose(1, 2)
+
+        kv_seq_len = key_states.shape[-2]
+        if past_key_value is not None:
+            kv_seq_len += past_key_value[0].shape[-2]
+
+        if past_key_value is not None:
+            # reuse k, v, self_attention
+            key_states = torch.cat([past_key_value[0], key_states], dim=2)
+            value_states = torch.cat([past_key_value[1], value_states], dim=2)
+
+        past_key_value = (key_states, value_states) if use_cache else None
+
+        attn_weights = torch.matmul(query_states, key_states.transpose(2, 3)) / math.sqrt(self.head_dim)
+
+        if attention_mask is not None:
+            if q_len == 1: # inference with cache
+                if len(attention_mask.size()) == 4:
+                    attention_mask = attention_mask[:, :, -1:, :]   
+                else:
+                    attention_mask = attention_mask[:, -1:, :]    
+            attn_weights = attn_weights + attention_mask
+            attn_weights = torch.max(attn_weights, torch.tensor(torch.finfo(attn_weights.dtype).min))
+
+        attn_weights = torch.nn.functional.softmax(attn_weights, dim=-1)
+
+        attn_output = torch.matmul(attn_weights, value_states)
+
+        attn_output = attn_output.transpose(1, 2)
+        attn_output = attn_output.reshape(bsz, q_len, self.hidden_size)
+        attn_output = self.o_proj(attn_output)
+
+        if not output_attentions:
+            attn_weights = None
+
+        return attn_output, attn_weights, past_key_value
+
+
+class BaichuanLayer(torch.nn.Module):
+    def __init__(self, config: BaichuanConfig):
+        super().__init__()
+        self.hidden_size = config.hidden_size
+        self.self_attn = BaichuanAttention(config=config)
+        self.mlp = MLP(
+            hidden_size=self.hidden_size,
+            intermediate_size=config.intermediate_size,
+            hidden_act=config.hidden_act,
+        )
+        self.input_layernorm = RMSNorm(config.hidden_size, epsilon=config.rms_norm_eps)
+        self.post_attention_layernorm = RMSNorm(config.hidden_size, epsilon=config.rms_norm_eps)
+
+    def forward(
+            self,
+            hidden_states: torch.Tensor,
+            attention_mask: Optional[torch.Tensor] = None,
+            past_key_value: Optional[Tuple[torch.Tensor]] = None,
+            output_attentions: Optional[bool] = False,
+            use_cache: Optional[bool] = False,
+    ) -> Tuple[torch.FloatTensor, Optional[Tuple[torch.FloatTensor, torch.FloatTensor]]]:
+
+        residual = hidden_states
+
+        hidden_states = self.input_layernorm(hidden_states)
+
+        # Self Attention
+        hidden_states, self_attn_weights, present_key_value = self.self_attn(
+            hidden_states=hidden_states,
+            attention_mask=attention_mask,
+            past_key_value=past_key_value,
+            output_attentions=output_attentions,
+            use_cache=use_cache,
+        )
+        hidden_states = residual + hidden_states
+
+        # Fully Connected
+        residual = hidden_states
+        hidden_states = self.post_attention_layernorm(hidden_states)
+        hidden_states = self.mlp(hidden_states)
+        hidden_states = residual + hidden_states
+
+        outputs = (hidden_states,)
+
+        if use_cache:
+            outputs += (present_key_value,)
+
+        return outputs
+
+
+class BaichuanPreTrainedModel(PreTrainedModel):
+    config_class = BaichuanConfig
+    base_model_prefix = "model"
+    supports_gradient_checkpointing = True
+    _no_split_modules = ["BaichuanLayer"]
+    _keys_to_ignore_on_load_unexpected = [r"decoder\.version"]
+
+    def _init_weights(self, module):
+        std = self.config.initializer_range
+        if isinstance(module, torch.nn.Linear):
+            module.weight.data.normal_(mean=0.0, std=std)
+            if module.bias is not None:
+                module.bias.data.zero_()
+        elif isinstance(module, torch.nn.Embedding):
+            module.weight.data.normal_(mean=0.0, std=std)
+            if module.padding_idx is not None:
+                module.weight.data[module.padding_idx].zero_()
+
+    def _set_gradient_checkpointing(self, module, value=False):
+        if isinstance(module, BaichuanModel):
+            module.gradient_checkpointing = value
+
+
+class BaichuanModel(BaichuanPreTrainedModel):
+    def __init__(self, config: BaichuanConfig):
+        super().__init__(config)
+        self.padding_idx = config.pad_token_id
+        self.vocab_size = config.vocab_size
+        self.n_head = config.num_attention_heads
+        self.embed_tokens = torch.nn.Embedding(config.vocab_size, config.hidden_size, self.padding_idx)
+        self.layers = torch.nn.ModuleList([BaichuanLayer(config) for _ in range(config.num_hidden_layers)])
+        self.norm = RMSNorm(config.hidden_size, epsilon=config.rms_norm_eps)
+
+        self.gradient_checkpointing = config.gradient_checkpointing
+        self.post_init()
+        self.max_cache_pos = config.model_max_length
+        self.first_run = True
+        self.alibi_mask = None
+
+    def get_input_embeddings(self):
+        return self.embed_tokens
+
+    def set_input_embeddings(self, value):
+        self.embed_tokens = value
+
+    def get_alibi_mask(self, tensor, seq_length_with_past):
+        if self.training:
+            slopes = torch.Tensor(_get_interleave(self.n_head))
+            alibi = slopes.unsqueeze(1).unsqueeze(1) * torch.arange(seq_length_with_past).unsqueeze(0).unsqueeze(0).expand(
+                self.n_head,
+                -1, -1) 
+            alibi = alibi.view(self.n_head, 1, seq_length_with_past)
+            mask = _buffered_future_mask(tensor, seq_length_with_past, alibi, self.n_head)
+        else:
+            if self.first_run:
+                self.first_run = False
+                self.register_buffer("future_mask", _gen_alibi_mask(self.n_head, self.max_cache_pos).to(tensor), persistent=False)
+            if seq_length_with_past > self.max_cache_pos:
+                self.max_cache_pos = seq_length_with_past
+                self.register_buffer("future_mask", _gen_alibi_mask(self.n_head, self.max_cache_pos).to(tensor), persistent=False)
+            mask = self.future_mask[:self.n_head, :seq_length_with_past, :seq_length_with_past] 
+        return mask
+
+    def forward(
+            self,
+            input_ids: torch.LongTensor = None,
+            attention_mask: Optional[torch.Tensor] = None,
+            past_key_values: Optional[List[torch.FloatTensor]] = None,
+            inputs_embeds: Optional[torch.FloatTensor] = None,
+            use_cache: Optional[bool] = False,
+            output_attentions: Optional[bool] = False,
+            output_hidden_states: Optional[bool] = False,
+            return_dict: Optional[bool] = True,
+    ) -> Union[Tuple, BaseModelOutputWithPast]:
+
+        if input_ids is not None and inputs_embeds is not None:
+            raise ValueError("You cannot provide both input_ids and inputs_embeds simultaneously")
+        elif input_ids is not None:
+            batch_size, seq_length = input_ids.shape
+        elif inputs_embeds is not None:
+            batch_size, seq_length, _ = inputs_embeds.shape
+        else:
+            raise ValueError("You need to provide input_ids or inputs_embeds")
+
+        return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+
+        seq_length_with_past = seq_length
+
+        if past_key_values is not None:
+            past_key_values_length = past_key_values[0][0].shape[2]
+            seq_length_with_past = seq_length_with_past + past_key_values_length
+
+        if inputs_embeds is None:
+            inputs_embeds = self.embed_tokens(input_ids)
+
+        if self.training:
+            if self.alibi_mask is None or self.alibi_mask.shape[-1] != seq_length_with_past:
+                self.alibi_mask = self.get_alibi_mask(inputs_embeds, seq_length_with_past)
+            alibi_mask = self.alibi_mask
+        else:
+            alibi_mask = self.get_alibi_mask(inputs_embeds, seq_length_with_past)
+
+        if attention_mask is not None:
+            if len(attention_mask.shape) == 2:
+                expanded_mask = attention_mask.to(alibi_mask.dtype)
+                expanded_mask = torch.tril(torch.gt(expanded_mask[:, :, None] * expanded_mask[:, None, :], 0)
+                                ) * torch.eq(expanded_mask[:, :, None] - expanded_mask[:, None, :], 0)
+            else:
+                expanded_mask = attention_mask 
+            bsz = inputs_embeds.size(0)
+            src_len, tgt_len = alibi_mask.size()[-2:]
+            expanded_mask = expanded_mask.unsqueeze(1).expand(bsz, 1, src_len, tgt_len).to(alibi_mask.dtype)
+            inverted_mask = 1.0 - expanded_mask
+            inverted_mask = inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(alibi_mask.dtype).min)
+            attention_mask = inverted_mask + alibi_mask.unsqueeze(0)
+        else:
+            attention_mask = alibi_mask
+
+        hidden_states = inputs_embeds
+
+        if self.gradient_checkpointing and self.training:
+            if use_cache:
+                logger.warning_once(
+                    "`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
+                )
+                use_cache = False
+
+        # decoder layers
+        all_hidden_states = () if output_hidden_states else None
+        all_self_attns = () if output_attentions else None
+        next_decoder_cache = () if use_cache else None
+
+        for idx, decoder_layer in enumerate(self.layers):
+            if output_hidden_states:
+                all_hidden_states += (hidden_states,)
+
+            past_key_value = past_key_values[idx] if past_key_values is not None else None
+
+            if self.gradient_checkpointing and self.training:
+
+                def create_custom_forward(module):
+                    def custom_forward(*inputs):
+                        # None for past_key_value
+                        return module(*inputs, output_attentions, None)
+
+                    return custom_forward
+
+                layer_outputs = torch.utils.checkpoint.checkpoint(
+                    create_custom_forward(decoder_layer),
+                    hidden_states,
+                    attention_mask,
+                    None,
+                )
+            else:
+                layer_outputs = decoder_layer(
+                    hidden_states,
+                    attention_mask=attention_mask,
+                    past_key_value=past_key_value,
+                    output_attentions=output_attentions,
+                    use_cache=use_cache,
+                )
+
+            hidden_states = layer_outputs[0]
+
+            if use_cache:
+                next_decoder_cache += (layer_outputs[2 if output_attentions else 1],)
+
+            if output_attentions:
+                all_self_attns += (layer_outputs[1],)
+
+        hidden_states = self.norm(hidden_states)
+
+        # add hidden states from the last decoder layer
+        if output_hidden_states:
+            all_hidden_states += (hidden_states,)
+
+        next_cache = next_decoder_cache if use_cache else None
+        if not return_dict:
+            return tuple(v for v in [hidden_states, next_cache, all_hidden_states, all_self_attns] if v is not None)
+        return BaseModelOutputWithPast(
+            last_hidden_state=hidden_states,
+            past_key_values=next_cache,
+            hidden_states=all_hidden_states,
+            attentions=all_self_attns,
+        )
+
+
+class BaichuanForCausalLM(BaichuanPreTrainedModel):
+    def __init__(self, config):
+        super().__init__(config)
+        self.model = BaichuanModel(config)
+        self.lm_head = torch.nn.Linear(config.hidden_size, config.vocab_size, bias=False)
+
+        # Initialize weights and apply final processing
+        self.post_init()
+
+    def get_input_embeddings(self):
+        return self.model.embed_tokens
+
+    def set_input_embeddings(self, value):
+        self.model.embed_tokens = value
+
+    def get_output_embeddings(self):
+        return self.lm_head
+
+    def set_output_embeddings(self, new_embeddings):
+        self.lm_head = new_embeddings
+
+    def set_decoder(self, decoder):
+        self.model = decoder
+
+    def get_decoder(self):
+        return self.model
+
+    def forward(
+            self,
+            input_ids: torch.LongTensor = None,
+            attention_mask: Optional[torch.Tensor] = None,
+            past_key_values: Optional[List[torch.FloatTensor]] = None,
+            inputs_embeds: Optional[torch.FloatTensor] = None,
+            labels: Optional[torch.LongTensor] = None,
+            use_cache: Optional[bool] = None,
+            output_attentions: Optional[bool] = False,
+            output_hidden_states: Optional[bool] = False,
+            return_dict: Optional[bool] = True,
+            **kwargs
+    ) -> Union[Tuple, CausalLMOutputWithPast]:
+
+        return_dict = return_dict if return_dict is not None else self.config.use_return_dict
+        
+        # decoder outputs consists of (dec_features, layer_state, dec_hidden, dec_attn)
+        outputs = self.model(
+            input_ids=input_ids,
+            attention_mask=attention_mask,
+            past_key_values=past_key_values,
+            inputs_embeds=inputs_embeds,
+            use_cache=use_cache,
+            output_attentions=output_attentions,
+            output_hidden_states=output_hidden_states,
+            return_dict=return_dict,
+        )
+
+        hidden_states = outputs[0]
+        logits = self.lm_head(hidden_states)
+
+        loss = None
+        if labels is not None:
+            # Shift so that tokens < n predict n
+            shift_logits = logits[..., :-1, :].contiguous()
+            shift_labels = labels[..., 1:].contiguous()
+            # Flatten the tokens
+            loss_fct = CrossEntropyLoss()
+            shift_logits = shift_logits.view(-1, self.config.vocab_size)
+            shift_labels = shift_labels.view(-1)
+            # Enable model parallelism
+            shift_labels = shift_labels.to(shift_logits.device)
+            loss = loss_fct(shift_logits, shift_labels)
+
+        if not return_dict:
+            output = (logits,) + outputs[1:]
+            return (loss,) + output if loss is not None else output
+
+        return CausalLMOutputWithPast(
+            loss=loss,
+            logits=logits,
+            past_key_values=outputs.past_key_values,
+            hidden_states=outputs.hidden_states,
+            attentions=outputs.attentions,
+        )
+
+    def prepare_inputs_for_generation(
+            self,
+            input_ids: torch.LongTensor,
+            past_key_values: Optional[torch.Tensor] = None,
+            attention_mask: Optional[torch.Tensor] = None,
+            inputs_embeds: Optional[torch.Tensor] = None,
+            **kwargs
+    ):
+        if past_key_values:
+            input_ids = input_ids[:, -1:]
+
+        # if `inputs_embeds` are passed, we only want to use them in the 1st generation step
+        if inputs_embeds is not None and past_key_values is None:
+            model_inputs = {"inputs_embeds": inputs_embeds}
+        else:
+            model_inputs = {"input_ids": input_ids}
+
+        model_inputs.update(
+            {
+                "past_key_values": past_key_values,
+                "use_cache": kwargs.get("use_cache"),
+                "attention_mask": attention_mask
+            }
+        )
+        return model_inputs
+
+    @staticmethod
+    def _reorder_cache(past_key_values, beam_idx):
+        return tuple(
+            tuple(past_state.index_select(0, beam_idx) for past_state in layer_past)
+            for layer_past in past_key_values
+        )
+
+    def quantize(self, bits: int):
+        try:
+            from .quantizer import QLinear
+        except ImportError:
+            raise ImportError(
+                f"Needs QLinear to run quantize."
+            )
+
+        for layer in self.model.layers:
+            layer.self_attn.W_pack = QLinear(
+                bits=bits,
+                weight=layer.self_attn.W_pack.weight,
+                bias = None,
+            )
+            layer.self_attn.o_proj = QLinear(
+                bits=bits,
+                weight=layer.self_attn.o_proj.weight,
+                bias = None,
+            )
+            layer.mlp.gate_proj = QLinear(
+                bits=bits,
+                weight=layer.mlp.gate_proj.weight,
+                bias = None,
+            )
+            layer.mlp.down_proj = QLinear(
+                bits=bits,
+                weight=layer.mlp.down_proj.weight,
+                bias = None,
+            )
+            layer.mlp.up_proj = QLinear(
+                bits=bits,
+                weight=layer.mlp.up_proj.weight,
+                bias = None,
+            )
+        return self
+
+    @torch.no_grad()
+    def chat(self, tokenizer, messages: List[dict], stream=False,
+             generation_config: Optional[GenerationConfig]=None):
+        generation_config = generation_config or self.generation_config
+        input_ids = build_chat_input(self, tokenizer, messages, generation_config.max_new_tokens)
+        if stream:
+            streamer = TextIterStreamer(tokenizer, skip_prompt=True, skip_special_tokens=True)
+            Thread(target=self.generate, kwargs=dict(
+                inputs=input_ids, streamer=streamer,
+                generation_config=generation_config,
+            )).start()
+            return streamer
+        else:
+            outputs = self.generate(input_ids, generation_config=generation_config)
+            response = tokenizer.decode(outputs[0][len(input_ids[0]):], skip_special_tokens=True)
+            return response

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+}

MedLang-13B/quantizer.py

@@ -0,0 +1,123 @@
+# Copyright (c) 2023, Baichuan Intelligent Technology. All rights reserved.
+
+import torch
+from typing import List
+import bz2
+import base64
+import ctypes
+from transformers.utils import logging
+logger = logging.get_logger(__name__)
+
+try:
+    from cpm_kernels.kernels.base import LazyKernelCModule, KernelFunction, round_up
+
+    class Kernel:
+        def __init__(self, code: bytes, function_names: List[str]):
+            self.code = code
+            self._function_names = function_names
+            self._cmodule = LazyKernelCModule(self.code)
+
+            for name in self._function_names:
+                setattr(self, name, KernelFunction(self._cmodule, name))
+    quantization_code = 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X/aQkYgSLdftV0Id/5gf3lOuNNC0799E3uYYtpMg6yABaJz5en+HpUfveNBXeYA8Whj8TtZK60F8V863ndv3PwKagCzpXtfv1APjaUgxkGLtptiZPR9vldS2Bfy0pT3RXWJlLCCj+GpAz28S4v0YQrYE7We9WpbVXz7KVTWEtoXM/UPZhYnpzdeokWJdNHQ6JQLxp7bOfci50rBcdOdhOqmyeC7B2rL6rxd969Xxc9L4zMrsqZ0+DoaPeSn8Y5QMLTOLpdvz1qaOO5xT1xPjgKnhTYa5pzi5U+bDcHXzYdxpgAbbhf/e8aBprxka5aM2J3lYXBG5G/r7CunzcPyjz2o79z8eDKkMvdO9WixswXLu3TkpoYcV0465fwUxoxC6L9Zwc+QsLDfqipk3wMSSRkBPM8Bxrwt0Mjr4IWW9Tw+Kw23yTbUyYJqrgNaq7saBKAdzYXMQ6mkrfqt72Lk0YwiZmIKkXUgChISCZMMrwdnjWbJDoR5ZXGxxAX5uRBfHBOk6JS8VVVWd56zxf8v3uR0/zON57e6BDuqIcQDJ7H0q5BNPaWbExYw2Bj4tRM9kB+JfynyyEfR/7ZiPXRFLmwpGGjLF9G6/J65mkUZEaKrUdBZYUxFKqGJL4LAbEfZjLi4GYXhv+x3ZpHkC3YADdMsKeYmfKgtzUd+Y7dVngbdcEFGAL3VqaYfYAYMtY3YKIQumTVXUFTFQyU0bqIeMgV2WOcZFXICpoMvueYVy0mHAiaeyNg1p5/QmSbYgyb7WQdUPfY3QeKc0hewGB2z2vH9t+pvy7B6P21pG+wXCMQHZl30TJonLPhQg8nka+raw1OLPUVWvIidrloKjcLH6/YAwepAoWEykQ9Bw2+YU/N5dbXnsNcPbubOszstYSwQYATYulLN0AHAgwb5t+VfATV6uhICgRgDGUaoVNNLc9ZMMW5+qKVhOyoRMLzJolo17ACLDPes+aoyeD5aIZm46HHKV7KqGX1IGbYEEDaAh0Vj+43wIMep+e+gsP4UEgVjmMAWTPz2XZhQDA6/Vzbk0fK+v0+bNB12LRbfmsufKzRgw7Hp7b+J+N2LqWXdwWTvhQ2rIPjc2cgS2A4Ub7IflPitJFAPyFvbvHK+tXi0Zcbi6mO6HTaIydOeYDmSYUIACAZwJCEgueoJnU7W6WfGdWtl1TdD4WHQ8AgDnmNUD+2YrjxNum3+1R9B+XSiSGrVLcFrVC/Z9R7D8DslIGyMPXbJAFthAMNYs7OdlqPilZtnwtReItC2Ff5vD8mQHwayX/vh1LB+HwoefoZ6LWUKb7WH6D0FmEhEKgwAayAYsoKUCcPepjDQYfA2TMWHoiS1lspYmEi2HdFULic/ucQlrFCCwPxyDeITAUsiAUFggCtZuDuVPLvVtM4WCG6DlrLwBL1JAaQFWuf7/uHZ1WAHEBuz9BMrshS8OhZpwrmYpgUIFoauEJQxtrw2iu9bT1ZLik/F26jhZblz7739qomvexIWc5hKq/GfFAebrnq/23mGuisbZhiROtNdFBDwqCBc2zrTYMfhMPwIF0s37CzzvYKeLjIfQZ3D2N6o+FRgDOkDGFGjCDiy9cJBVMOBWJ1AjDIxTAz/LwSRYuyzhHyDiECf0P53hWshYcMslf0PC0tWfLlUztN1xTxhwgkAudx+IE+NuS3phgEhRBo5lXEG6KhGydUzSU2WphfuFy0VkjH2AIPddbJ679s70tkL1rBEEEEmFgwK5pRCB6ZC5EX7ZCkCTI1pQUDJAwhQoosjBZFAjelFmydnwH9j46Ei5DD9ZaOvgT54UpSh4mD7FR2rjbJjFFdyOauUAjNr/DYBQJkLsUsd2mAXDIMHOuu8ULJhkx21G0UL7fnlqIPfiwdblRpcEaxVjru+6bHpdvj38qAOr1rUACbHrKGDWLFjGCBGYoGREGZBh4aGauRARRTmJdfJBWYoCDdFrBtCgYo6H8NyRIvFfbeTFjxF9riIiIiJABkRljjGMYx1mizcSoJ9AAFqKHXgBBgYnYjs06fFb2fl/bceQ8TeN4h1jrKPd/Pbtl3dl3fnbu7u7u7u7u7u7u7u7u79ZxeoA2gbgjyqd70779v47Lsepzo6y18vJkhQMaDKDNhYbWPpJA6hsD3pzguE4gtOhzrtDoDA3oMbPVBY/3fi0DbkWt7GQwMw2BtpNpeKt+v6KytGxxqCQ8JoLCGKIALFxqwIOeI7fqckjnW8eHjcW3xehEp2SWhvmrtDDdoBSOn6jSjQCgLuhd+EBOwr3q9GbUewJDA4QvH+DpFwt+JbtP30yJTy10KFMLT8MmAGUKkqn3DQHSmTACxjEheIpDhGuZT/WrsHgP+ly7Bsto8UYb2bBvwPRV1O/WaEbmIEMEbQtfphLgUDADF7nayfXs1CXBxYOi1aG36B7rr5EX31tzoym2bTIWw0maxvM3Gs+KAOSMztimS4oGQokBRf5dGKNykDp8tH9chWc9k7/6I+SxG5cZSnx52CFhoDqaZ8wBethxjRVKaRfCZTeBpi6ZNdZFjROy9x6tdgMem0rtuH6wbAz9tKvlhJ0JUP1e+2xVgroJFw8tQxLPdwVnLVMDu+mmfk9b5mK3qMNwiMyBqFaajMIgCDBYUXbdKwwVVhoMXL5YLkI5FFviIkYQTNamuapRILAqCSAYSsIOOVAtAUUrDwBSthRBgyVAM1wBrIQhhTlJKQIwFnj+b+aXuJyerhwx7HxQLofddtH71c6UuefecFIrANhfgkaIt5KL4iV43tMeP17BD8D7Dl8+AQTGQfz/rp3JWOfDodJOcvDAquYl1QQiHknUmAQ3lYpRUtJEUowXnnJnOZjZzdINlj+y7lXBb2uPR6a2E5AC3S6dBaJxYl1qyRXwQ15QflVkAK8AmAwql/n4frTztb/XRXV9J3eXRfv0MuB1OShRrtbrfdudwKxsAYC+QHiNISbAQu46ffUU/Flrw68uJ5L+7p69JjfglHs5PSd0bjADZeFsIWCqy0kQ20m3CskYLPShb0aoDdHoJBUQVEirAUgeRTtUBwAa0INXTIBPMHp9AongtXzSfuWCFQfDtzRuYRVG3WIXUjEg7b2vBZKT4ESq2tTcMyGXlqZN+uJ3CaGHEJB/3Q6/xrGIGIxyzCG5tLlSXx61sy0Bra4IFaYrjF1zJj5JPK/SslbN65uYffnqtyIX9zren+rrSsXVVhq8VZ6DFpnBVlD48AoMeltsyGSZSpdUjR6bM9J+oHRVmhpp2HBv+N4PXeS76ctP4LOLvreBzzyCr2v1K7eBo+dr2gwZ2x9k6EpHd7pNRl6Pv+IgXtj4WmtlEUQxkzWOVcT6jcLrhax5PVvgurz9q7DtdWriVdnpnTlTrQqdvWN6ZNr4OdpMM/T5Gg8irLXS/YOgvhteS49VEj8+IfNiPOf8MfMkUw+lYehdNxKZnNbjIoJiqRY1KVGIOWpRtq4m6GCyiypZKKzWBQq5j8RYJE0NCiyjJmgUmDBi8BoJgMVJYXMF4aGDL2XQ4HDKaRGaGhctNBrShK0bSU1BpFoRaTkkCCUWaDCx1MUXQCaGRhgoqhCHmzrFyZwUFG27KVdmNgbChCbZNAMghZRoXKM0CMEXaUTZswtBpLoCkxONrpa2wL0qn0mw2eV0yXs1MGgGSTcAo/GELIbpoe+8gKSqpV0ZIoIa4UCcM2EdVikuAPuDlU89YsXrb9Zb+Pr/F8NexBBbEwTQs9HmsQGBYPoK6bZKDvj9yyALrlOaMbLpKxRM+njvB4id/1Y1WPm3K2A0BVSlgWJNjYxne6JZ8mZfv7w1Nm3/GFOiwonktduZaRH2loGGhNBUlQiHENkybM8pBim0iaXcpE8dAF4GodlriMfOGH6hHY20huVvSlLDBRKHQ4Y3SyKrmCcy7ZZMDyNqVWWwpS+RHQaYnmEURGCKmQc8ARghpQffVMwK2vz6V97O+59X5foz4jUfN33Z49cKeKObXDE1rNvV2QaDOLOi+R0fl+RM8jVQ7QgNiDMzMgUCLlYO71Vn7X7vF0UcSZX1pu+s+xC4MZXNQCl0/rb68aAY3rOJ/jaw7EOYIIlln6V+oFpwZLOUjUVHfe6pdjXgAqsD219Ri16edZ03hcjePW71C29Wy0nTw5YIfs/Y9sNovb+v8vA1P7beB5bQmvEv59b+BnUs8yqQ5/cLKV0EZRMOGHmpsMrPidWDXTyP3fuO+w/9+kbujeEbdg+n4WXJQBn1kL3Py/M1JnkOu70oufaRPG6bsd6SUhq1TALBZAhKpoyMIvkQGRAzJD+udGR9e+WlVzjlJeqELl+D2smL4vG6BUFpiKHDwqftFBbX+9VV338vNg+5kL11bd1yrZaYZrGW36mrUIRi/MVgrNNITCj++zpFSOrRLE+Prlr3mYOP1TtXvtpOwLP5Kmt+3zZvXSsOXW+ix6mXS5mb1MnTvW0u8yHF356RuzXUyeGiLTe+IvXvKmJrEymIxQT9QMSU8WTHgnJi1BgP/WoqICgO21v9Hiw8IaXJY1619oEj/3cb/7R/nddLm6VA5xoN0t3XY6Hiep4VGnzs/Od0hj8f39YuAC5HvfwvWuOeV5fz820AAGglyrLFDjUrv//M/fwNdsEvj0MrTXrV8vLZfMvKMAzJ0/Sda/28/N0QniGmKhoagYUYMGp8IFDrOoi40L48r/SLxfSSDw9TM4P4vUeHE+iTmchyj7Vmwp7m7dejVSNZx+2Is5jzuf+HmHr2aml3fWein0wnXnxne72A86Cc3hrzXgbfc7lNQiJuGMljn2Y8pgXjrTczIy1teeafy8Tz8vmzBWAAFXfojX/x4Kv/YFNprgURbUBytnsI9/0WeuKmZjrWcumUGQgRDIEUsAwZkQMwPsGTJjpTEw7YAwCs7Oxn2XE+hexXn+z/L7HC65bJhCR3SxMdHngfkGgqJnhYzTGjw9StB6E4VI6SgkdNEdesLFW0cgxeYq7YABEPlMspZSBtZDQYZMvK9Cbu/UzXvja7MLlO4BfVYkMH5dwAfQ3u9WEkCoveLyp86iGmleemxREJQ0NoFyWpMxsNQCuuLGCdP703Uv1a3JeT7vfpxp8J+o/ft+J70dz7dV+1QEcxyT6REE6vsl2+0Yd8ayjKWBg2j8pRTeGhVxiYZDc6/YatrSzsw56wbWzGkp3FLpa8+60pan1LSvb+rcfyjTyEM7yC5BVyZL4r0qVCMZRc+AMHxlyZMP5QQiFATNqpVSdy8i66S7oSIl4APKPMzOTus/KeI8rrY6qBkuRSWT0y7LGvNz4KBjigkR4r0v9/bluxFmxePnvZRhpjgezOiX6bPa5LZkzsaLjmf6NzPP1ZfH9p7j4MsQL0YMETXjeb/5lAYcJWU1RECXppb+33HdO5Etl4xLXPxfV8cGZ43FFYXKVoMFQHssoAIzyiClcZR8W8vqiACqmcw8DAwzLM+FeLFaAYRiJ1DFqKh2Fcs+6Zd6erYKNpF09oZhCZNX4DO1OL94JPGTBXIPMmPjmDb0GlmwFaWG2CUqSjhc20YNd6Wwzu52BklGYvDcMnERi4Yh1wqwcOlqiLatNe4rj8FcXDxqMSsgYP5/FnSoTq2VVKttXQ3Gxq0q0Shp+qCbIAeWxu1Ynpd88H5zJfn/V+v+5/N7nyR7Q+n02bmML7aF1Sg+a32Ud2eQx2a8dQqTABf2SKJgvKADJgAJV8Rd0Wt1oIVj9nr/ZfC7fkbdqnS9R4eIbqH2HVNjOYdggfFeSAHKIkaC5R2rzEzdxs7dDCzizsiB7OluhJplyBBWKXPmS0tsUNnNs2D8zfW/QTSAr0EcsnQ/YPZBD4D0rHa3rkC2DHq+G97XfliTeY63fQow3RQpyKsCFgdUC2sF7aep4TmSDjlnDDpfIUJ3Ne7AMT4D7xpuM+j1hXBxYcyIpO3bvLubMhwY3Lrr6KfLP4PF0tpDjMOew5rBbSSUJPAfRMkDCSBum/B7S97oYaYZS56rtu79Vh408mfXcm6HcL0Qe7fRiqav0GhPcuxMpZIm/WHpICgBUirY8aK56MaW53+L/x+BbXNrjaySqntSLsoHFEiExu5hX7+yaqu7Ss2LrWVpPp9L8fuVDJdVcPqIQRFv/gWlUadkCUYMxFQf26Nlq3czS1/zwLAGILGRazcevp3q9/0O/YUWwXKvQTQghgHliLIIbcY0XxVr/9oV2++gsQ57NkRK084MjYapPJJ6Gd7WONsJRq6iIJo0GH/kO9e74wvERAiMW7UqLI+2obG59Xcazzvdk2UIhBDN4V/KqrwHJ9EpMftxjsugftMee96M9+G1DfnomWt7OmvNC5TP5/Fa50GNfJjieHFJ0mwlIothDYzg3BQyahykpudGZEmgiK9ViiKhI9ypBUuKuau8PitJWe1r0kVIrV4VRDTDa74vSvBytKDcNCzJ66Oq5G+hTTGgbpBMS6pJTOmrIjb0m9HsPvrI3rQhSkRYc1aEmn4+CFS9MpIxTpLccqtp+dpwTDqQfFDvleEeOfwGuSJEiR4QBtGkWjWrKysrJEiRI3Pd252xBk1NTBRRRZZZZZZZZZe4EJvbjqWGaaZgEypipYBc9da7d615Ozv+0TPBMoiPZt+OB7H2evtWBqyXzg9jgyNarCYQHxeABDu8KyT59xFO4fpXed3nMVTnQhwffnGz0DpW+c5RkbdjYgCQgDV6Sk3OZyVhq5u3M66CH4jQq6byDLwIv8D7ipARoPE7/rm7y2+93QALi1QT9F/QCxMDOQkHeUdC+o3NN9GXve/W1Ua/wcVgmxFD1YTuKB+xQIiSdMyXLjSbjWwNfsJH8DqADRWZHIyjHLolbAN4CAMrT3YQqcfwcVf9TtpcgPfzwWRN7XWJzrS1KzOVWXccRQ+9TusY64JEtzfyHJnKixBwcbgCBAgQiIiIiiqp3Pje3Y4/hFGgiIiqrTGMYxtsZSR3dlixYyrLVZTH79fh8yNTc4ezofRU9vjHOIATEYEQNb4IG7bzkD59jIzRNInn9c62cuu1ZkYpfHu7uokt8nd1Hc6ApKjEt2qqbEG2l6oUPERCkrFLjmUay3EPnj2vUe43MqIYdrm3PZT7WrLfnw7y9is1SEtuI3OsO3EW80l8imWVq1Yje2a7qnbRVNK7eZSUzwnE6j9CLm24oqbZ35UTokBKroRjwJNyCBEACLMRjnOy84O5zJREd0g8Xa+y0W7O3tcCI+46EvAjDUyqYnOCQAfEhYjlWVo9HFVl0Fk1g6rWywYXLyW9gmyJHKcFdans6g078Q9ryUjaXacP7/PvwauCguS3VK61FsSTIa5RZd+GJqurSiskfDyz7d0Bd7WxYHfJfTrpTamo87sRYMCEdyYaUdCzhu3027ABTtQCAnwKi9q3KK/rIpk6zEjGHEvADnOwuJ1nOvPr8XZNswFPZ07G/LauwBMG1tOWNT76s7Jw1OxxW1BImaJT6XUIQ/1VPRP6UZLBjAVwit2h7xS6TLbCUnzPvqOrOfrbFh/ZAFnP7jW/zIMkMNMUk5C20iKshen2HLTcv3ge8jBXRbUso7c88qlYXXozqDXWcHg21XXWzupu9YmNN2aY8W/tJ3ru1cs4YtK5b/YBitp4WYoOvZCpCIC0Ju2+xw3MABgLVFBetW9KA2pqTQMLlkKFfMNANN6+JBLD7W6/i0AiMi2fIgslxtlD+bdgBbDk1FxvsbR+npU23xUVtnBjvadzYRwqwnvWSPbrgxgFM01Y2yuGIJh4HBXDlmKSUokWxg39HUAD4u4+D8ivAiXNQkqnkKxTsDkVM+u/s6rx/w/VPZ1yL9nnzJm2YZ9Wl+9izPDiRnfzWU5Eo5duybQnktKu3b+J3pVuuBmmnebBXfiZtkpUjLRKvtuhD3GDAd3t8lPpMQgVQmkICwxxqhUhLQMPWxbwjlswPn5rmN8Fi0j25H0DYQMgIsU4+OvNxfxINfZR+ndisEVJrn6M1cgs+qsqW2AYv5gIBUG2nAI2sRJdPp0pkIFsJQ9DC0Exajuxg+5pGLShRHi9wPxlNGkITynkwYgPc5Bjm1ceZiqsTuXbr2ZrcqBszMKehW3A7cYHig2nqO46ef4275H+NjUxZ7Yxj0XWdJ+CBStOyj3EqZrP6f8049HRTOibY6aHBkysu7Zy/0S6gyH3v1st5NJVth4dqmwuarDr5z62e9OpPUqH6te3WRJmOs5XNggNsBgGGgo4SSlh/wYAXsqj3aHIiODcmQbAbQltCKcIoU5klptJHQ0l2P4Tgjad8WBWp9XyPm/j3QYeU5tV+GSJ4bCaYcK2PA4Spq7rr4bGK2La8fhcB+ZpbeVZdDoKcxwCBZQgvQmADvnSmoonhrOe7esVg+7JS5aUYwMCekjlC6YlQHUxfh1evKIB8OGrutYZ4YX41h6Jq6hHuvnBsJnjhYHY81i95iJiJTU6/T7VS3gB1qH0ACm35YBe58z7ceWShP5goYAvCcHOTphatcimJSi7e8cPtVNlLBeanev47WzlgmaIlrfg8PQALIwuyc+Ce7PTEdI6IMaL62wH5dzYaANEsRgmxYif+uWKupAwqrJ4eXO3BFsHrOiYQRSnB5GwA01qir3ZWamHuBtKIrzLS3by/XYFMY2AJEnhaR7ycHZFV8q2AKplu2J5dsQ24LL0qZisABXaOzHlwBFOQv0vOYWldhDsVt5f3Y4pEAsNwPQChB5QmJB9EYeqbx1Mx3plDVGMY02NMYxjG228wkHXLQBuctwIzDl0DNb2d3Zr2eV57mni8HxuT3pPieEQB9MdPlRq2ASoAJ5D34BKD2+jwhMSM3k9e3pXf6aOC4LK2IgIYJ4xQMEhhPzy+0BRQRAMTrG+uVq2FlPAAWvayCMW6HdOctiAZvYzmADuOlcPkF5QWJAaMRsb5I0Onl1kWwDFstny1tu3cPUt/f34gagGAiIG0z+LwJMwuBjAAO0oXQ+j2OhzkkDWu/H1iOt9LZS2d9xud3NjEIOUBcEGiLbYAIhuk6kG3QiZ7Vx448qOR0823ux6gaDAo/m7VGENCDY55QyihE8PY2c3FAOq0eB5VrR2rVOD8Pk54g10gYFruoShyCA600IlGADNkNWFwSUq26fo1MfJozZb8ivAWwKtUCnsIy1VVc6gilxgZXuOpIn5NqpQ4t1rnTCc+zVGQ8dLhuE4NDF7wA+sXOKNy3yzCWV69Yg3C0AUAEgSDmXcoIVu+dFgcdgdaEhA+iWl1AC/p9ikx5Lmxupjb3zEXwOwav5pXeGFu/i1uQdRtu2CBnIi7j7vIXJ+0+JkKDrtuikSysRrZuAkIPGGIXa2KOvhm+tzKtliPPcIGhgwSePz0mjUO5L7zzmcZMHoTM00cmhmTJXLHXXVL0wJj4s1MzRHFFiZHJnI5xbqYKxtqajjQWsuDBeCnFPf3bjFXVC0XXPfJZnZvcUOvlJ5TfVc9np7+YKcF8Pr101cACqIsDSQrhevDLMRutoELrdyRd4yc4EBhnWVGVUo4LsLWMYimrKjHNShUXacMGzWd1rteL0aqM9Wd9vU8jWwVgD0CDq0ypYdiu5V1wDsEFjDwLXJ6pe46MvOgOONLlAwPQwQmNUX+2AdnCCSJdjtaAefC8AY7bANwtVktFIQWVBQ95dSmjz8VnKFc5xsXgOQl3TQHPvghbPELlyOR3/IjaKbR4oXeqF4EjmEktr0SghMIXS60jhlBQIfEIJnyehMgiETwigxDpiHows1RgnEalhk2EzYwRLmRwajUmIaCFSzCXWStGaaJgaMaFOidK9crUyN2ZuYmDCMxbjQvOVrOaRTDXXVeCjhum+v9g5xzwDtdCQ0k+kA7IgR/IB4DE2B6gEv0Dv6l1YUCwQl4cgIQLDp7+vyQ0Ua6AogR/cA0tRku3sTszsBxdKvDwb0HSuapgWAtRzrmM+GLTWgg8og8IOyt6ZvFLTvQ6TdIU4jAZ9qJLorPPx8ToMIzve9bunjAzUZTwZAuejvlIVhEDGHZ43P+c2vnuH0s6xLjGN5IxE0xoW1w0CkEhDEzZIIIKKKJQkS+HFVRzrtPvD4ASgRgCszCJ7egCW+IZ1AZrFQIbETEL8gYz6s0SYtQwYi6Qsmdq1IQVCNcDQEDNHPNnw9vKmss525+DcQrAWHAQARzWHlAGPJFvL0qtVnM2mDSOxfDb56lUUmGI9SmNfCBxBRJtxwA+2eJCOmpSpXLFbYv8diZyMpTv2LEbyMNcTJr20IxsYzUrvRbyu5dvYHUZsRs8gfCLXUEVYi8a2a9PXF+ZtLPx0ZOLRblX8XTa0QJJSoa+VKRIKD5RCmFKYOIiBoFAUCXYIXCCWZKNExSIoiMUmCpS01EkRLAsoE0NCxCz8oQK0iCYNZrgS0sWA4zJgpKMgxYZxIN0k6OoboxHmMgmKyNy3rUrA2BW11g0yU50ArBdUNYm7rW6l+FmQDmsfUcr8Nxpt6ME1pzmPW2YuvyqQA1FEqGKaOFgPS4YwF0qjqJ96aNghQyxO4ETMPCpx6cPhE1xsRksh7qapVjAG7QQVa6blYCqhJolWKylASeNpfutZRkWEfehrAM1hps1M6VN9y+8pnOeOL3eSrvGKkr3kEDbExtsYADtYMAhLoFzWdZo6F3T89cLurlkYDQ8iWVgjINJHQatNc/BZZPPYhX7J3dX5zJTnZ1pJIV4y+k2MF25BTUhIvz2okmED6ax7KgYdJtMkMMjHiBpMVmJIippQbqyHkJreoQDGrZe8QH4qNpIBqEHFpVTrJVwkLCu5ds3+pbccosPAGFjP4J0AB15EXRr4rcAbXmibqr2600yb4dM8VbMHACFOCBZhZIxpWCMkDUZIBUQoKpooWCkAnBzOK5na/LqSSLTATYIaabQCteZkFlqs0bDPpuWAcNiRn6GWSnwrsatNVFIK0+WUGVX3p1UghXmamW9amFzoPHfP2Z3WLhW9ZEaq0DQiqOJyRC17MYwQA84eUDjyR/GOBNpNoO1pV6NwwsBZoAgBWz+M+YS5GC+Su1IEB0A5in0LwPQxXq7joeDPBdd3DzF6z96RTojxR29u8vE3GnO6jAa0MBmCuoxyYl/SDsbSpYIlMINttOUZndGWJ2JgBs8s7bw1GhnALOxFBnZayRRjt4bSvH+Ma9WNZSaKBoUDtDEQNIMt5XAZJIvEFZSahWUgL7ADIBAjZYJVAK8NHljSCRbLZdxbuCkFfrZVirL+GkBWYaJFCoglTaEWtiguhCVZNjj+c9eMUMbOVJQmcHOmKmRIKboAMkAbohUflNANgubKuhTXDGSlSKY0PetmdL+7bQoIJCVRY+osfasgH1NADQYBBoYd+dccoSIhapDyYkRkhkYGAZDWCMlJReDHnRJZKAxUYiJmPGYriVoGAkdW2QI785BQQakRBFiFEknMOMGpw8jj8a7sLaWrGrZ5gDnB2Ys6AFHfczh5BvVw8R6n1P4QHEbDeIf/i7kinChIP/Mpng="
+    kernels = Kernel(
+        bz2.decompress(base64.b64decode(quantization_code)),
+        [
+            "int4_to_fp16",
+            "fp16_to_int4",
+            "int8_to_fp16",
+            "fp16_to_int8",
+            "int4_to_bf16",
+            "bf16_to_int4",
+            "int8_to_bf16",
+            "bf16_to_int8",
+        ],
+    )
+except Exception as exception:
+    kernels = None
+    logger.warning("Failed to load kernels:" + str(exception))
+
+def quant4(weight: torch.Tensor, scale: torch.Tensor):
+    stream = torch.cuda.current_stream()
+    num_row = weight.size(0)
+    num_chan_fp16 = weight.size(1)
+    # 4bit
+    num_chan_int = num_chan_fp16 // 8
+    qweight = torch.zeros((num_row, num_chan_int), dtype=torch.int32, device=weight.device)
+    intweight = torch.empty(num_row, num_chan_fp16, dtype = torch.int32)
+    intweight = torch.clip(torch.round(weight.to(scale.dtype) / scale[:, None]),-16, 15).to(dtype=torch.int32)
+
+    for j in range(num_chan_int):
+        qweight[:, j] = ((intweight[:, j*8+7] & 0x0f) << 28) \
+            | ((intweight[:, j*8+6] & 0x0f) << 24) \
+            | ((intweight[:, j*8+5] & 0x0f) << 20) \
+            | ((intweight[:, j*8+4] & 0x0f) << 16) \
+            | ((intweight[:, j*8+3] & 0x0f) << 12) \
+            | ((intweight[:, j*8+2] & 0x0f) << 8) \
+            | ((intweight[:, j*8+1] & 0x0f) << 4) \
+            | ((intweight[:, j*8] & 0x0f))
+    return qweight
+
+def dequant4(qweight: torch.Tensor, scale: torch.Tensor, input: torch.Tensor):
+    stream = torch.cuda.current_stream()
+    num_row = qweight.size(0)
+    num_chan_int = qweight.size(1)
+    # 4bit
+    num_chan_fp16 = num_chan_int * 8
+    
+    out = torch.empty((num_row, num_chan_fp16), dtype=input.dtype, device=qweight.device)
+
+    blockDim = (128, 1, 1)
+    gridDim = ((num_chan_int + blockDim[0] - 1) // blockDim[0], num_row, 1)
+    if input.dtype == torch.bfloat16:
+    	kernels.int4_to_bf16(
+            gridDim,
+       	    blockDim,
+            0,
+            stream,
+            [ctypes.c_void_p(out.data_ptr()), ctypes.c_void_p(qweight.data_ptr()), 
+            ctypes.c_void_p(scale.data_ptr()), ctypes.c_int32(num_row), ctypes.c_int32(num_chan_int), ctypes.c_int32(num_chan_fp16)],
+        )
+    elif input.dtype == torch.float16:
+        kernels.int4_to_fp16(
+            gridDim,
+            blockDim,
+            0,
+            stream,
+            [ctypes.c_void_p(out.data_ptr()), ctypes.c_void_p(qweight.data_ptr()),
+            ctypes.c_void_p(scale.data_ptr()), ctypes.c_int32(num_row), ctypes.c_int32(num_chan_int), ctypes.c_int32(num_chan_fp16)],
+        )
+    return out
+
+class QLinear(torch.nn.Module):
+    def __init__(self, bits: int, weight: torch.Tensor, bias=None):
+        super().__init__()
+        self.quant_bits = bits
+        self.scale = weight.abs().max(dim=-1).values / ((2 ** (bits - 1)) - 1)
+        self.scale = self.scale.to(torch.float32)
+        if self.quant_bits == 4:
+            self.weight = quant4(weight, self.scale)
+        elif self.quant_bits == 8:
+            self.weight = torch.round(weight.to(self.scale.dtype) / self.scale[:, None]).to(torch.int8)
+        if self.quant_bits == 8:
+            self.weight = self.weight.T
+        self.bias = None
+
+    def forward(self, input):
+        if self.quant_bits == 4:
+            assert(input.dtype == torch.bfloat16 or input.dtype == torch.float16)            
+
+        if self.weight.device != input.device:
+            self.weight = self.weight.to(input.device)
+            self.scale = self.scale.to(input.device)
+        
+        if self.quant_bits == 4:
+            self.scale = self.scale.to(input.dtype)
+            rweight = dequant4(self.weight, self.scale, input).T
+            output = torch.matmul(input, rweight)
+        elif self.quant_bits == 8:
+            rweight = self.weight.to(input.dtype) * self.scale.to(input.dtype)
+            output = torch.matmul(input, rweight)
+        if self.bias is not None:
+            output = output + self.bias
+        return output

MedLang-13B/special_tokens_map.json

@@ -0,0 +1,30 @@
+{
+  "bos_token": {
+    "content": "<s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  },
+  "eos_token": {
+    "content": "</s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  },
+  "pad_token": {
+    "content": "<unk>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  },
+  "unk_token": {
+    "content": "<unk>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  }
+}

MedLang-13B/tokenization_baichuan.py

@@ -0,0 +1,234 @@
+# Copyright (c) 2023, Baichuan Intelligent Technology. All rights reserved.
+
+import os
+from shutil import copyfile
+from typing import Any, Dict, List, Optional, Tuple
+
+import sentencepiece as spm
+from transformers.tokenization_utils import AddedToken, PreTrainedTokenizer
+from transformers.utils import logging
+
+
+logger = logging.get_logger(__name__)
+
+VOCAB_FILES_NAMES = {"vocab_file": "tokenizer.model"}
+
+PRETRAINED_VOCAB_FILES_MAP = {
+    "vocab_file": {},
+    "tokenizer_file": {},
+}
+PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {}
+
+
+class BaichuanTokenizer(PreTrainedTokenizer):
+    """
+    Construct a Baichuan tokenizer. Based on byte-level Byte-Pair-Encoding.
+
+    Args:
+        vocab_file (`str`):
+            Path to the vocabulary file.
+    """
+
+    vocab_files_names = VOCAB_FILES_NAMES
+    pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
+    max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
+    model_input_names = ["input_ids", "attention_mask"]
+
+    def __init__(
+        self,
+        vocab_file,
+        unk_token="<unk>",
+        bos_token="<s>",
+        eos_token="</s>",
+        pad_token=None,
+        sp_model_kwargs: Optional[Dict[str, Any]] = None,
+        add_bos_token=True,
+        add_eos_token=False,
+        clean_up_tokenization_spaces=False,
+        **kwargs,
+    ):
+        self.sp_model_kwargs = {} if sp_model_kwargs is None else sp_model_kwargs
+        bos_token = AddedToken(bos_token, lstrip=False, rstrip=False) if isinstance(bos_token, str) else bos_token
+        eos_token = AddedToken(eos_token, lstrip=False, rstrip=False) if isinstance(eos_token, str) else eos_token
+        unk_token = AddedToken(unk_token, lstrip=False, rstrip=False) if isinstance(unk_token, str) else unk_token
+        pad_token = AddedToken(pad_token, lstrip=False, rstrip=False) if isinstance(pad_token, str) else pad_token
+
+        self.vocab_file = vocab_file
+        self.add_bos_token = add_bos_token
+        self.add_eos_token = add_eos_token
+        self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
+        self.sp_model.Load(vocab_file)
+
+        super().__init__(
+            bos_token=bos_token,
+            eos_token=eos_token,
+            unk_token=unk_token,
+            pad_token=pad_token,
+            add_bos_token=add_bos_token,
+            add_eos_token=add_eos_token,
+            sp_model_kwargs=self.sp_model_kwargs,
+            clean_up_tokenization_spaces=clean_up_tokenization_spaces,
+            **kwargs,
+        )
+        
+    def __getstate__(self):
+        state = self.__dict__.copy()
+        state["sp_model"] = None
+        return state
+
+    def __setstate__(self, d):
+        self.__dict__ = d
+        self.sp_model = spm.SentencePieceProcessor(**self.sp_model_kwargs)
+        self.sp_model.Load(self.vocab_file)
+
+    @property
+    def vocab_size(self):
+        """Returns vocab size"""
+        return self.sp_model.get_piece_size()
+
+    def get_vocab(self):
+        """Returns vocab as a dict"""
+        vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
+        vocab.update(self.added_tokens_encoder)
+        return vocab
+
+    def _tokenize(self, text):
+        """Returns a tokenized string."""
+        return self.sp_model.encode(text, out_type=str)
+
+    def _convert_token_to_id(self, token):
+        """Converts a token (str) in an id using the vocab."""
+        return self.sp_model.piece_to_id(token)
+
+    def _convert_id_to_token(self, index):
+        """Converts an index (integer) in a token (str) using the vocab."""
+        token = self.sp_model.IdToPiece(index)
+        return token
+
+    def convert_tokens_to_string(self, tokens):
+        """Converts a sequence of tokens (string) in a single string."""
+        current_sub_tokens = []
+        out_string = ""
+        prev_is_special = False
+        for i, token in enumerate(tokens):
+            # make sure that special tokens are not decoded using sentencepiece model
+            if token in self.all_special_tokens:
+                if not prev_is_special and i != 0:
+                    out_string += " "
+                out_string += self.sp_model.decode(current_sub_tokens) + token
+                prev_is_special = True
+                current_sub_tokens = []
+            else:
+                current_sub_tokens.append(token)
+                prev_is_special = False
+        out_string += self.sp_model.decode(current_sub_tokens)
+        return out_string
+
+    def save_vocabulary(self, save_directory, filename_prefix: Optional[str] = None) -> Tuple[str]:
+        """
+        Save the vocabulary and special tokens file to a directory.
+
+        Args:
+            save_directory (`str`):
+                The directory in which to save the vocabulary.
+
+        Returns:
+            `Tuple(str)`: Paths to the files saved.
+        """
+        if not os.path.isdir(save_directory):
+            logger.error(f"Vocabulary path ({save_directory}) should be a directory")
+            return
+        out_vocab_file = os.path.join(
+            save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
+        )
+
+        if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file) and os.path.isfile(self.vocab_file):
+            copyfile(self.vocab_file, out_vocab_file)
+        elif not os.path.isfile(self.vocab_file):
+            with open(out_vocab_file, "wb") as fi:
+                content_spiece_model = self.sp_model.serialized_model_proto()
+                fi.write(content_spiece_model)
+
+        return (out_vocab_file,)
+
+    def build_inputs_with_special_tokens(self, token_ids_0, token_ids_1=None):
+        bos_token_id = [self.bos_token_id] if self.add_bos_token else []
+        eos_token_id = [self.eos_token_id] if self.add_eos_token else []
+
+        output = bos_token_id + token_ids_0 + eos_token_id
+
+        if token_ids_1 is not None:
+            output = output + bos_token_id + token_ids_1 + eos_token_id
+
+        return output
+
+    def get_special_tokens_mask(
+        self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
+    ) -> List[int]:
+        """
+        Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
+        special tokens using the tokenizer `prepare_for_model` method.
+
+        Args:
+            token_ids_0 (`List[int]`):
+                List of IDs.
+            token_ids_1 (`List[int]`, *optional*):
+                Optional second list of IDs for sequence pairs.
+            already_has_special_tokens (`bool`, *optional*, defaults to `False`):
+                Whether or not the token list is already formatted with special tokens for the model.
+
+        Returns:
+            `List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
+        """
+        if already_has_special_tokens:
+            return super().get_special_tokens_mask(
+                token_ids_0=token_ids_0, token_ids_1=token_ids_1, already_has_special_tokens=True
+            )
+
+        bos_token_id = [1] if self.add_bos_token else []
+        eos_token_id = [1] if self.add_eos_token else []
+
+        if token_ids_1 is None:
+            return bos_token_id + ([0] * len(token_ids_0)) + eos_token_id
+        return (
+            bos_token_id
+            + ([0] * len(token_ids_0))
+            + eos_token_id
+            + bos_token_id
+            + ([0] * len(token_ids_1))
+            + eos_token_id
+        )
+
+    def create_token_type_ids_from_sequences(
+        self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
+    ) -> List[int]:
+        """
+        Creates a mask from the two sequences passed to be used in a sequence-pair classification task. An ALBERT
+        sequence pair mask has the following format:
+
+        ```
+        0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1
+        | first sequence    | second sequence |
+        ```
+
+        if token_ids_1 is None, only returns the first portion of the mask (0s).
+
+        Args:
+            token_ids_0 (`List[int]`):
+                List of ids.
+            token_ids_1 (`List[int]`, *optional*):
+                Optional second list of IDs for sequence pairs.
+
+        Returns:
+            `List[int]`: List of [token type IDs](../glossary#token-type-ids) according to the given sequence(s).
+        """
+        bos_token_id = [self.bos_token_id] if self.add_bos_token else []
+        eos_token_id = [self.eos_token_id] if self.add_eos_token else []
+
+        output = [0] * len(bos_token_id + token_ids_0 + eos_token_id)
+
+        if token_ids_1 is not None:
+            output += [1] * len(bos_token_id + token_ids_1 + eos_token_id)
+
+        return output
+

MedLang-13B/tokenizer.model

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:f7d1ab69d25c74644af5c5e4dcd1cc6e96d33783dbd257b6bdea55b643c72813
+size 1136765

MedLang-13B/tokenizer_config.json

@@ -0,0 +1,46 @@
+{
+  "add_bos_token": false,
+  "add_eos_token": false,
+  "auto_map": {
+    "AutoTokenizer": [
+      "tokenization_baichuan.BaichuanTokenizer",
+      null
+    ]
+  },
+  "bos_token": {
+    "__type": "AddedToken",
+    "content": "<s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  },
+  "clean_up_tokenization_spaces": false,
+  "eos_token": {
+    "__type": "AddedToken",
+    "content": "</s>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  },
+  "model_max_length": 4096,
+  "pad_token": {
+    "__type": "AddedToken",
+    "content": "<unk>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  },
+  "sp_model_kwargs": {},
+  "tokenizer_class": "BaichuanTokenizer",
+  "unk_token": {
+    "__type": "AddedToken",
+    "content": "<unk>",
+    "lstrip": false,
+    "normalized": true,
+    "rstrip": false,
+    "single_word": true
+  }
+}