EntangledSBM / entangled-cell /environment.yml
Sophia Tang
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name: entangled-cell
channels:
- conda-forge
- omnia
- defaults
dependencies:
- python=3.10
- pytorch-cuda=12.4
- rdkit=2024.09.6
- seaborn
- torchmetrics
- numpy[version='>=1.26.0,<2.0.0']
- mctc-lib
- scikit-learn
- pyyaml
- jupyter
- ase
- python[version='>=3.10']
- tqdm
- dxtb
- openbabel=3.1.1
- pytorch-lightning>=2.0.0
- lightning>=2.0.0
- joblib
- pip
- pip:
- scipy==1.13.1
- wandb==0.22.1
- torchcfm==1.0.7
- pyemma==2.5.12
- torchdyn==1.0.6
- pot
- jupyter
- ipykernel
- notebook