update model card README.md
Browse files
README.md
CHANGED
@@ -2,6 +2,11 @@
|
|
2 |
license: mit
|
3 |
tags:
|
4 |
- generated_from_trainer
|
|
|
|
|
|
|
|
|
|
|
5 |
model-index:
|
6 |
- name: Variome_5e-05_250
|
7 |
results: []
|
@@ -12,7 +17,13 @@ should probably proofread and complete it, then remove this comment. -->
|
|
12 |
|
13 |
# Variome_5e-05_250
|
14 |
|
15 |
-
This model is a fine-tuned version of [microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) on
|
|
|
|
|
|
|
|
|
|
|
|
|
16 |
|
17 |
## Model description
|
18 |
|
@@ -39,6 +50,32 @@ The following hyperparameters were used during training:
|
|
39 |
- lr_scheduler_type: linear
|
40 |
- training_steps: 500
|
41 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
42 |
### Framework versions
|
43 |
|
44 |
- Transformers 4.27.4
|
|
|
2 |
license: mit
|
3 |
tags:
|
4 |
- generated_from_trainer
|
5 |
+
metrics:
|
6 |
+
- precision
|
7 |
+
- recall
|
8 |
+
- f1
|
9 |
+
- accuracy
|
10 |
model-index:
|
11 |
- name: Variome_5e-05_250
|
12 |
results: []
|
|
|
17 |
|
18 |
# Variome_5e-05_250
|
19 |
|
20 |
+
This model is a fine-tuned version of [microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) on the None dataset.
|
21 |
+
It achieves the following results on the evaluation set:
|
22 |
+
- Loss: 0.0679
|
23 |
+
- Precision: 0.6097
|
24 |
+
- Recall: 0.5389
|
25 |
+
- F1: 0.5721
|
26 |
+
- Accuracy: 0.9860
|
27 |
|
28 |
## Model description
|
29 |
|
|
|
50 |
- lr_scheduler_type: linear
|
51 |
- training_steps: 500
|
52 |
|
53 |
+
### Training results
|
54 |
+
|
55 |
+
| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
|
56 |
+
|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
|
57 |
+
| 0.5834 | 0.35 | 25 | 0.1849 | 0.0 | 0.0 | 0.0 | 0.9760 |
|
58 |
+
| 0.1856 | 0.69 | 50 | 0.1791 | 0.0 | 0.0 | 0.0 | 0.9760 |
|
59 |
+
| 0.1611 | 1.04 | 75 | 0.1698 | 0.0 | 0.0 | 0.0 | 0.9760 |
|
60 |
+
| 0.1471 | 1.39 | 100 | 0.1219 | 0.1478 | 0.0290 | 0.0485 | 0.9764 |
|
61 |
+
| 0.1117 | 1.74 | 125 | 0.1133 | 0.1784 | 0.1426 | 0.1585 | 0.9767 |
|
62 |
+
| 0.1071 | 2.08 | 150 | 0.1030 | 0.2899 | 0.2220 | 0.2515 | 0.9789 |
|
63 |
+
| 0.0844 | 2.43 | 175 | 0.0977 | 0.3838 | 0.2750 | 0.3204 | 0.9805 |
|
64 |
+
| 0.087 | 2.78 | 200 | 0.0884 | 0.4084 | 0.3903 | 0.3991 | 0.9815 |
|
65 |
+
| 0.0785 | 3.12 | 225 | 0.0803 | 0.4895 | 0.4176 | 0.4507 | 0.9833 |
|
66 |
+
| 0.0647 | 3.47 | 250 | 0.0784 | 0.5545 | 0.4518 | 0.4979 | 0.9842 |
|
67 |
+
| 0.0592 | 3.82 | 275 | 0.0740 | 0.5655 | 0.5013 | 0.5315 | 0.9847 |
|
68 |
+
| 0.0525 | 4.17 | 300 | 0.0725 | 0.5916 | 0.5158 | 0.5511 | 0.9854 |
|
69 |
+
| 0.0515 | 4.51 | 325 | 0.0698 | 0.5861 | 0.5115 | 0.5463 | 0.9853 |
|
70 |
+
| 0.0483 | 4.86 | 350 | 0.0691 | 0.5994 | 0.5201 | 0.5569 | 0.9855 |
|
71 |
+
| 0.047 | 5.21 | 375 | 0.0702 | 0.5905 | 0.5209 | 0.5535 | 0.9855 |
|
72 |
+
| 0.0429 | 5.56 | 400 | 0.0693 | 0.5986 | 0.5286 | 0.5615 | 0.9858 |
|
73 |
+
| 0.0435 | 5.9 | 425 | 0.0673 | 0.5951 | 0.5397 | 0.5661 | 0.9858 |
|
74 |
+
| 0.0418 | 6.25 | 450 | 0.0676 | 0.5949 | 0.5329 | 0.5622 | 0.9858 |
|
75 |
+
| 0.038 | 6.6 | 475 | 0.0679 | 0.6013 | 0.5397 | 0.5689 | 0.9860 |
|
76 |
+
| 0.0355 | 6.94 | 500 | 0.0679 | 0.6097 | 0.5389 | 0.5721 | 0.9860 |
|
77 |
+
|
78 |
+
|
79 |
### Framework versions
|
80 |
|
81 |
- Transformers 4.27.4
|