AmelieSchreiber
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Upload 48 files
Browse files- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/README.md +21 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/adapter_config.json +26 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/adapter_model.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/added_tokens.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/optimizer.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/rng_state.pth +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/scheduler.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/special_tokens_map.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/tokenizer_config.json +54 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/trainer_state.json +415 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/training_args.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/vocab.txt +33 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/README.md +21 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/adapter_config.json +26 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/adapter_model.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/added_tokens.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/optimizer.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/rng_state.pth +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/scheduler.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/special_tokens_map.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/tokenizer_config.json +54 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/trainer_state.json +543 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/training_args.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/vocab.txt +33 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/README.md +21 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/adapter_config.json +26 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/adapter_model.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/added_tokens.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/optimizer.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/rng_state.pth +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/scheduler.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/special_tokens_map.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/tokenizer_config.json +54 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/trainer_state.json +147 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/training_args.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/vocab.txt +33 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/README.md +21 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/adapter_config.json +26 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/adapter_model.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/added_tokens.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/optimizer.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/rng_state.pth +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/scheduler.pt +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/special_tokens_map.json +7 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/tokenizer_config.json +54 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/trainer_state.json +281 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/training_args.bin +3 -0
- esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/vocab.txt +33 -0
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/README.md
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---
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library_name: peft
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---
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## Training procedure
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The following `bitsandbytes` quantization config was used during training:
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- quant_method: bitsandbytes
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- load_in_8bit: False
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- load_in_4bit: True
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- llm_int8_threshold: 6.0
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- llm_int8_skip_modules: None
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- llm_int8_enable_fp32_cpu_offload: False
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- llm_int8_has_fp16_weight: False
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- bnb_4bit_quant_type: nf4
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- bnb_4bit_use_double_quant: True
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- bnb_4bit_compute_dtype: bfloat16
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### Framework versions
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- PEFT 0.6.0.dev0
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/adapter_config.json
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{
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"alpha_pattern": {},
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"auto_mapping": null,
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"base_model_name_or_path": "facebook/esm2_t6_8M_UR50D",
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"bias": "none",
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"fan_in_fan_out": false,
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"inference_mode": true,
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"init_lora_weights": true,
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"layers_pattern": null,
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"layers_to_transform": null,
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"lora_alpha": 1,
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"lora_dropout": 0.5,
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"modules_to_save": [
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"classifier"
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],
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"peft_type": "LORA",
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"r": 2,
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"rank_pattern": {},
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"revision": null,
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"target_modules": [
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"query",
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"key",
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"value"
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],
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"task_type": "TOKEN_CLS"
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}
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/adapter_model.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:9aa2cfb408dccd4df17ebd460d1c53e78d1634a07d4fdbc9fa235a87559ba464
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size 108323
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/added_tokens.json
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{
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"<cls>": 0,
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"<eos>": 2,
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"<mask>": 32,
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"<pad>": 1,
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"<unk>": 3
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}
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/optimizer.pt
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version https://git-lfs.github.com/spec/v1
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+
oid sha256:90d68ccc83326239b324895a33766d44e52a8f0e5db512b7ffc7f1460ab88f7e
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size 211805
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/rng_state.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:77b0ab42bbe269c06df0d453790ac0c293c65348ede27908f98bd8f1ebd0fc13
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size 14575
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/scheduler.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:d3676a61e287c72a94f887301dbd12aad47cd3033c71e16308c1190c5c28aecd
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size 627
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/special_tokens_map.json
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{
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"cls_token": "<cls>",
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"eos_token": "<eos>",
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"mask_token": "<mask>",
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"pad_token": "<pad>",
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"unk_token": "<unk>"
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}
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/tokenizer_config.json
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{
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"added_tokens_decoder": {
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"0": {
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"content": "<cls>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"1": {
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"content": "<pad>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"2": {
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"content": "<eos>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"3": {
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"content": "<unk>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"32": {
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"content": "<mask>",
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"lstrip": false,
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"normalized": false,
|
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"rstrip": false,
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"single_word": false,
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"special": true
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}
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},
|
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"additional_special_tokens": [],
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"clean_up_tokenization_spaces": true,
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"cls_token": "<cls>",
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+
"eos_token": "<eos>",
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"mask_token": "<mask>",
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"model_max_length": 1024,
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"pad_token": "<pad>",
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"tokenizer_class": "EsmTokenizer",
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"tokenizer_file": null,
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"unk_token": "<unk>"
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}
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/trainer_state.json
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|
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}
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|
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|
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|
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|
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|
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|
415 |
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}
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/training_args.bin
ADDED
@@ -0,0 +1,3 @@
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|
1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:21e29ca655570a4c93caaae2152a14df90626498f407241f0d253a3640c7a8ce
|
3 |
+
size 4155
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-11817/vocab.txt
ADDED
@@ -0,0 +1,33 @@
|
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|
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|
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|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
<cls>
|
2 |
+
<pad>
|
3 |
+
<eos>
|
4 |
+
<unk>
|
5 |
+
L
|
6 |
+
A
|
7 |
+
G
|
8 |
+
V
|
9 |
+
S
|
10 |
+
E
|
11 |
+
R
|
12 |
+
T
|
13 |
+
I
|
14 |
+
D
|
15 |
+
P
|
16 |
+
K
|
17 |
+
Q
|
18 |
+
N
|
19 |
+
F
|
20 |
+
Y
|
21 |
+
M
|
22 |
+
H
|
23 |
+
W
|
24 |
+
C
|
25 |
+
X
|
26 |
+
B
|
27 |
+
U
|
28 |
+
Z
|
29 |
+
O
|
30 |
+
.
|
31 |
+
-
|
32 |
+
<null_1>
|
33 |
+
<mask>
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/README.md
ADDED
@@ -0,0 +1,21 @@
|
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|
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|
|
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|
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|
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|
|
|
|
|
1 |
+
---
|
2 |
+
library_name: peft
|
3 |
+
---
|
4 |
+
## Training procedure
|
5 |
+
|
6 |
+
|
7 |
+
The following `bitsandbytes` quantization config was used during training:
|
8 |
+
- quant_method: bitsandbytes
|
9 |
+
- load_in_8bit: False
|
10 |
+
- load_in_4bit: True
|
11 |
+
- llm_int8_threshold: 6.0
|
12 |
+
- llm_int8_skip_modules: None
|
13 |
+
- llm_int8_enable_fp32_cpu_offload: False
|
14 |
+
- llm_int8_has_fp16_weight: False
|
15 |
+
- bnb_4bit_quant_type: nf4
|
16 |
+
- bnb_4bit_use_double_quant: True
|
17 |
+
- bnb_4bit_compute_dtype: bfloat16
|
18 |
+
### Framework versions
|
19 |
+
|
20 |
+
|
21 |
+
- PEFT 0.6.0.dev0
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/adapter_config.json
ADDED
@@ -0,0 +1,26 @@
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1 |
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{
|
2 |
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"alpha_pattern": {},
|
3 |
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|
4 |
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"base_model_name_or_path": "facebook/esm2_t6_8M_UR50D",
|
5 |
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"bias": "none",
|
6 |
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"fan_in_fan_out": false,
|
7 |
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"inference_mode": true,
|
8 |
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"init_lora_weights": true,
|
9 |
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|
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|
12 |
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"lora_dropout": 0.5,
|
13 |
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"modules_to_save": [
|
14 |
+
"classifier"
|
15 |
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],
|
16 |
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"peft_type": "LORA",
|
17 |
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"r": 2,
|
18 |
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"rank_pattern": {},
|
19 |
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"revision": null,
|
20 |
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"target_modules": [
|
21 |
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"query",
|
22 |
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"key",
|
23 |
+
"value"
|
24 |
+
],
|
25 |
+
"task_type": "TOKEN_CLS"
|
26 |
+
}
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/adapter_model.bin
ADDED
@@ -0,0 +1,3 @@
|
|
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|
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|
|
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|
1 |
+
version https://git-lfs.github.com/spec/v1
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2 |
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oid sha256:3ea428d19fc1c256e6d448e032b63cbcb1c0fe35c1cad4960c7a6ed03c5b92ba
|
3 |
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size 108323
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/added_tokens.json
ADDED
@@ -0,0 +1,7 @@
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|
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|
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|
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|
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|
1 |
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{
|
2 |
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"<cls>": 0,
|
3 |
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|
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|
5 |
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|
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"<unk>": 3
|
7 |
+
}
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/optimizer.pt
ADDED
@@ -0,0 +1,3 @@
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|
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|
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|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
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2 |
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oid sha256:3f16afa5d73496c13e042eb7e137c69517f95ec7f0ab3b4c76fd442bf9edf2e0
|
3 |
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size 211805
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/rng_state.pth
ADDED
@@ -0,0 +1,3 @@
|
|
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|
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|
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|
1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:291bc0bdc85d782988ee26dcae148038cc1f15508622f285332bbe7b99270d1b
|
3 |
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size 14575
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/scheduler.pt
ADDED
@@ -0,0 +1,3 @@
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|
|
|
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|
1 |
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version https://git-lfs.github.com/spec/v1
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oid sha256:86ab8ca8d941f7a9dc0e1bfb3c414eb3afc0b3e1513ea8a7ce0db94586cd403d
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size 627
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/special_tokens_map.json
ADDED
@@ -0,0 +1,7 @@
|
|
|
|
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|
|
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|
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|
1 |
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{
|
2 |
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"cls_token": "<cls>",
|
3 |
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"eos_token": "<eos>",
|
4 |
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"mask_token": "<mask>",
|
5 |
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"pad_token": "<pad>",
|
6 |
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"unk_token": "<unk>"
|
7 |
+
}
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/tokenizer_config.json
ADDED
@@ -0,0 +1,54 @@
|
|
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|
1 |
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{
|
2 |
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"added_tokens_decoder": {
|
3 |
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"0": {
|
4 |
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"content": "<cls>",
|
5 |
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"lstrip": false,
|
6 |
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|
7 |
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|
8 |
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|
9 |
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|
10 |
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},
|
11 |
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"1": {
|
12 |
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"content": "<pad>",
|
13 |
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|
14 |
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|
15 |
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|
16 |
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|
17 |
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"special": true
|
18 |
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},
|
19 |
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"2": {
|
20 |
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|
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|
22 |
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|
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|
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|
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|
26 |
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},
|
27 |
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"3": {
|
28 |
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"content": "<unk>",
|
29 |
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"lstrip": false,
|
30 |
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"normalized": false,
|
31 |
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"rstrip": false,
|
32 |
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"single_word": false,
|
33 |
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"special": true
|
34 |
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},
|
35 |
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"32": {
|
36 |
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|
37 |
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|
38 |
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|
39 |
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|
40 |
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|
41 |
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|
42 |
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}
|
43 |
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},
|
44 |
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"additional_special_tokens": [],
|
45 |
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|
46 |
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"cls_token": "<cls>",
|
47 |
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"eos_token": "<eos>",
|
48 |
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|
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|
50 |
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|
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|
52 |
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"tokenizer_file": null,
|
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"unk_token": "<unk>"
|
54 |
+
}
|
esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-15756/trainer_state.json
ADDED
@@ -0,0 +1,543 @@
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-3939/README.md
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---
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The following `bitsandbytes` quantization config was used during training:
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esm2_t6_8M_qlora_binding_sites_2023-09-28_00-05-45/checkpoint-7878/README.md
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