Commit
•
a85d4ab
1
Parent(s):
94d457b
Update README.md
Browse files
README.md
CHANGED
@@ -26,6 +26,15 @@ using a `80/20` train/test split. This model was trained with class weighting du
|
|
26 |
of the RNA binding site dataset (fewer binding sites than non-binding sites). You can train your own version
|
27 |
using [this notebook](https://huggingface.co/AmelieSchreiber/esm2_t6_8M_weighted_lora_rna_binding/blob/main/LoRA_binding_sites_no_sweeps_v2.ipynb)!
|
28 |
You just need the RNA `binding_sites.xml` file [found here](https://huggingface.co/datasets/AmelieSchreiber/data_of_protein-rna_binding_sites).
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
29 |
A similar model can also be trained using the Github with a training script and conda env YAML, which can be
|
30 |
[found here](https://github.com/Amelie-Schreiber/esm2_LoRA_binding_sites/tree/main). This version uses wandb sweeps for hyperparameter search.
|
31 |
However, it does not use class weighting.
|
|
|
26 |
of the RNA binding site dataset (fewer binding sites than non-binding sites). You can train your own version
|
27 |
using [this notebook](https://huggingface.co/AmelieSchreiber/esm2_t6_8M_weighted_lora_rna_binding/blob/main/LoRA_binding_sites_no_sweeps_v2.ipynb)!
|
28 |
You just need the RNA `binding_sites.xml` file [found here](https://huggingface.co/datasets/AmelieSchreiber/data_of_protein-rna_binding_sites).
|
29 |
+
You may also need to run some `pip install` statements at the beginning of the script:
|
30 |
+
|
31 |
+
```python
|
32 |
+
!pip install transformers[torch] datasets peft -q
|
33 |
+
```
|
34 |
+
```python
|
35 |
+
!pip install accelerate -U -q
|
36 |
+
```
|
37 |
+
|
38 |
A similar model can also be trained using the Github with a training script and conda env YAML, which can be
|
39 |
[found here](https://github.com/Amelie-Schreiber/esm2_LoRA_binding_sites/tree/main). This version uses wandb sweeps for hyperparameter search.
|
40 |
However, it does not use class weighting.
|