AmelieSchreiber commited on
Commit
c4a7b07
1 Parent(s): fcf5eb5

Upload 10 files

Browse files
adapter_model.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:43b452dd060767dd70f47cedeaf44542b697374130a372bf310a1f45bd6c156f
3
+ size 316315
added_tokens.json ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ {
2
+ "<cls>": 0,
3
+ "<eos>": 2,
4
+ "<mask>": 32,
5
+ "<pad>": 1,
6
+ "<unk>": 3
7
+ }
optimizer.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:0246b16ad2a4ff5346cc7cd436d9865710a83f218ce64578c913184989a1485a
3
+ size 613061
rng_state.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:cd9c5833a930482059798aab998f33fa3d0167a6fcf4b32dba0ae0b19178c0c2
3
+ size 14575
scheduler.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:081e2d3bd93b47a1a918240d8077826ebb0b43206a9f65cc14d171889238fc62
3
+ size 627
special_tokens_map.json ADDED
@@ -0,0 +1,7 @@
 
 
 
 
 
 
 
 
1
+ {
2
+ "cls_token": "<cls>",
3
+ "eos_token": "<eos>",
4
+ "mask_token": "<mask>",
5
+ "pad_token": "<pad>",
6
+ "unk_token": "<unk>"
7
+ }
tokenizer_config.json ADDED
@@ -0,0 +1,54 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "added_tokens_decoder": {
3
+ "0": {
4
+ "content": "<cls>",
5
+ "lstrip": false,
6
+ "normalized": false,
7
+ "rstrip": false,
8
+ "single_word": false,
9
+ "special": true
10
+ },
11
+ "1": {
12
+ "content": "<pad>",
13
+ "lstrip": false,
14
+ "normalized": false,
15
+ "rstrip": false,
16
+ "single_word": false,
17
+ "special": true
18
+ },
19
+ "2": {
20
+ "content": "<eos>",
21
+ "lstrip": false,
22
+ "normalized": false,
23
+ "rstrip": false,
24
+ "single_word": false,
25
+ "special": true
26
+ },
27
+ "3": {
28
+ "content": "<unk>",
29
+ "lstrip": false,
30
+ "normalized": false,
31
+ "rstrip": false,
32
+ "single_word": false,
33
+ "special": true
34
+ },
35
+ "32": {
36
+ "content": "<mask>",
37
+ "lstrip": false,
38
+ "normalized": false,
39
+ "rstrip": false,
40
+ "single_word": false,
41
+ "special": true
42
+ }
43
+ },
44
+ "additional_special_tokens": [],
45
+ "clean_up_tokenization_spaces": true,
46
+ "cls_token": "<cls>",
47
+ "eos_token": "<eos>",
48
+ "mask_token": "<mask>",
49
+ "model_max_length": 1024,
50
+ "pad_token": "<pad>",
51
+ "tokenizer_class": "EsmTokenizer",
52
+ "tokenizer_file": null,
53
+ "unk_token": "<unk>"
54
+ }
trainer_state.json ADDED
@@ -0,0 +1,189 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "best_metric": 0.3440490710592986,
3
+ "best_model_checkpoint": "esm2_t12_35M_qlora_binding_sites_2023-09-30_06-27-21/checkpoint-5289",
4
+ "epoch": 1.0,
5
+ "eval_steps": 500,
6
+ "global_step": 5289,
7
+ "is_hyper_param_search": false,
8
+ "is_local_process_zero": true,
9
+ "is_world_process_zero": true,
10
+ "log_history": [
11
+ {
12
+ "epoch": 0.04,
13
+ "learning_rate": 0.0003700117150420716,
14
+ "loss": 0.4265,
15
+ "step": 200
16
+ },
17
+ {
18
+ "epoch": 0.08,
19
+ "learning_rate": 0.0003695766709151845,
20
+ "loss": 0.2446,
21
+ "step": 400
22
+ },
23
+ {
24
+ "epoch": 0.11,
25
+ "learning_rate": 0.00036885235529645174,
26
+ "loss": 0.1964,
27
+ "step": 600
28
+ },
29
+ {
30
+ "epoch": 0.15,
31
+ "learning_rate": 0.00036783990382720894,
32
+ "loss": 0.1714,
33
+ "step": 800
34
+ },
35
+ {
36
+ "epoch": 0.19,
37
+ "learning_rate": 0.000366540903911771,
38
+ "loss": 0.1556,
39
+ "step": 1000
40
+ },
41
+ {
42
+ "epoch": 0.23,
43
+ "learning_rate": 0.00036495739222857005,
44
+ "loss": 0.1454,
45
+ "step": 1200
46
+ },
47
+ {
48
+ "epoch": 0.26,
49
+ "learning_rate": 0.00036309185153688393,
50
+ "loss": 0.1387,
51
+ "step": 1400
52
+ },
53
+ {
54
+ "epoch": 0.3,
55
+ "learning_rate": 0.0003609472067841633,
56
+ "loss": 0.133,
57
+ "step": 1600
58
+ },
59
+ {
60
+ "epoch": 0.34,
61
+ "learning_rate": 0.0003585268205200591,
62
+ "loss": 0.1289,
63
+ "step": 1800
64
+ },
65
+ {
66
+ "epoch": 0.38,
67
+ "learning_rate": 0.0003558344876243421,
68
+ "loss": 0.1228,
69
+ "step": 2000
70
+ },
71
+ {
72
+ "epoch": 0.42,
73
+ "learning_rate": 0.0003528744293569798,
74
+ "loss": 0.1208,
75
+ "step": 2200
76
+ },
77
+ {
78
+ "epoch": 0.45,
79
+ "learning_rate": 0.00034965128673969907,
80
+ "loss": 0.1167,
81
+ "step": 2400
82
+ },
83
+ {
84
+ "epoch": 0.49,
85
+ "learning_rate": 0.0003461701132794125,
86
+ "loss": 0.1131,
87
+ "step": 2600
88
+ },
89
+ {
90
+ "epoch": 0.53,
91
+ "learning_rate": 0.0003424363670449164,
92
+ "loss": 0.1113,
93
+ "step": 2800
94
+ },
95
+ {
96
+ "epoch": 0.57,
97
+ "learning_rate": 0.00033845590210928363,
98
+ "loss": 0.1088,
99
+ "step": 3000
100
+ },
101
+ {
102
+ "epoch": 0.61,
103
+ "learning_rate": 0.00033423495937136847,
104
+ "loss": 0.1081,
105
+ "step": 3200
106
+ },
107
+ {
108
+ "epoch": 0.64,
109
+ "learning_rate": 0.00032978015677081454,
110
+ "loss": 0.1054,
111
+ "step": 3400
112
+ },
113
+ {
114
+ "epoch": 0.68,
115
+ "learning_rate": 0.00032509847891190683,
116
+ "loss": 0.1029,
117
+ "step": 3600
118
+ },
119
+ {
120
+ "epoch": 0.72,
121
+ "learning_rate": 0.0003201972661125376,
122
+ "loss": 0.102,
123
+ "step": 3800
124
+ },
125
+ {
126
+ "epoch": 0.76,
127
+ "learning_rate": 0.0003150842028954544,
128
+ "loss": 0.0999,
129
+ "step": 4000
130
+ },
131
+ {
132
+ "epoch": 0.79,
133
+ "learning_rate": 0.0003097673059398367,
134
+ "loss": 0.098,
135
+ "step": 4200
136
+ },
137
+ {
138
+ "epoch": 0.83,
139
+ "learning_rate": 0.00030425491151208934,
140
+ "loss": 0.0972,
141
+ "step": 4400
142
+ },
143
+ {
144
+ "epoch": 0.87,
145
+ "learning_rate": 0.00029855566239556173,
146
+ "loss": 0.0968,
147
+ "step": 4600
148
+ },
149
+ {
150
+ "epoch": 0.91,
151
+ "learning_rate": 0.0002926784943396845,
152
+ "loss": 0.0947,
153
+ "step": 4800
154
+ },
155
+ {
156
+ "epoch": 0.95,
157
+ "learning_rate": 0.00028663262204976965,
158
+ "loss": 0.0933,
159
+ "step": 5000
160
+ },
161
+ {
162
+ "epoch": 0.98,
163
+ "learning_rate": 0.00028042752473944106,
164
+ "loss": 0.094,
165
+ "step": 5200
166
+ },
167
+ {
168
+ "epoch": 1.0,
169
+ "eval_accuracy": 0.9297529150299436,
170
+ "eval_auc": 0.8167222019799886,
171
+ "eval_f1": 0.3440490710592986,
172
+ "eval_loss": 0.6011912822723389,
173
+ "eval_mcc": 0.3730152153022164,
174
+ "eval_precision": 0.22835223718675476,
175
+ "eval_recall": 0.697386656717114,
176
+ "eval_runtime": 3756.1015,
177
+ "eval_samples_per_second": 144.201,
178
+ "eval_steps_per_second": 0.687,
179
+ "step": 5289
180
+ }
181
+ ],
182
+ "logging_steps": 200,
183
+ "max_steps": 15867,
184
+ "num_train_epochs": 3,
185
+ "save_steps": 500,
186
+ "total_flos": 4.006517704836067e+17,
187
+ "trial_name": null,
188
+ "trial_params": null
189
+ }
training_args.bin ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b915c4deb5ba56cacb3593b78264a7c9bd0e44e5e5af7a361d94ad20b8ca1c89
3
+ size 4155
vocab.txt ADDED
@@ -0,0 +1,33 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ <cls>
2
+ <pad>
3
+ <eos>
4
+ <unk>
5
+ L
6
+ A
7
+ G
8
+ V
9
+ S
10
+ E
11
+ R
12
+ T
13
+ I
14
+ D
15
+ P
16
+ K
17
+ Q
18
+ N
19
+ F
20
+ Y
21
+ M
22
+ H
23
+ W
24
+ C
25
+ X
26
+ B
27
+ U
28
+ Z
29
+ O
30
+ .
31
+ -
32
+ <null_1>
33
+ <mask>