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esm2_t12_35M_lora_binding_sites_v2_cp3

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PEFT
English
ESM-2
biology
protein language model
binding sites
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Upload conda-environment.yml

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  1. conda-environment.yml +154 -0
conda-environment.yml ADDED
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+ name: esm2_binding_py38b
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+ channels:
3
+ - pytorch
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+ - nvidia
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+ - anaconda
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+ - defaults
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+ dependencies:
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+ - _libgcc_mutex=0.1=main
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+ - _openmp_mutex=5.1=1_gnu
10
+ - asttokens=2.0.5=pyhd3eb1b0_0
11
+ - backcall=0.2.0=pyhd3eb1b0_0
12
+ - blas=1.0=mkl
13
+ - brotlipy=0.7.0=py38h27cfd23_1003
14
+ - bzip2=1.0.8=h7b6447c_0
15
+ - ca-certificates=2023.01.10=h06a4308_0
16
+ - certifi=2022.12.7=py38h06a4308_0
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+ - cffi=1.15.1=py38h5eee18b_3
18
+ - charset-normalizer=2.0.4=pyhd3eb1b0_0
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+ - comm=0.1.2=py38h06a4308_0
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+ - cryptography=41.0.2=py38h22a60cf_0
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+ - cuda-cudart=11.8.89=0
22
+ - cuda-cupti=11.8.87=0
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+ - cuda-libraries=11.8.0=0
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+ - cuda-nvrtc=11.8.89=0
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+ - cuda-nvtx=11.8.86=0
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+ - cuda-runtime=11.8.0=0
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+ - debugpy=1.5.1=py38h295c915_0
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+ - decorator=5.1.1=pyhd3eb1b0_0
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+ - entrypoints=0.4=py38h06a4308_0
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+ - executing=0.8.3=pyhd3eb1b0_0
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+ - ffmpeg=4.3=hf484d3e_0
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+ - filelock=3.9.0=py38h06a4308_0
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+ - freetype=2.12.1=h4a9f257_0
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+ - giflib=5.2.1=h5eee18b_3
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+ - gmp=6.2.1=h295c915_3
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+ - gmpy2=2.1.2=py38heeb90bb_0
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+ - gnutls=3.6.15=he1e5248_0
38
+ - idna=3.4=py38h06a4308_0
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+ - intel-openmp=2023.1.0=hdb19cb5_46305
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+ - ipykernel=6.19.2=py38hb070fc8_0
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+ - ipython=8.8.0=py38h06a4308_0
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+ - jedi=0.18.1=py38h06a4308_1
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+ - jinja2=3.1.2=py38h06a4308_0
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+ - jpeg=9e=h5eee18b_1
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+ - jupyter_client=7.4.8=py38h06a4308_0
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+ - jupyter_core=5.1.1=py38h06a4308_0
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+ - lame=3.100=h7b6447c_0
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+ - lcms2=2.12=h3be6417_0
49
+ - ld_impl_linux-64=2.38=h1181459_1
50
+ - lerc=3.0=h295c915_0
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+ - libcublas=11.11.3.6=0
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+ - libcufft=10.9.0.58=0
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+ - libcufile=1.7.2.10=0
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+ - libcurand=10.3.3.141=0
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+ - libcusolver=11.4.1.48=0
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+ - libcusparse=11.7.5.86=0
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+ - libdeflate=1.17=h5eee18b_0
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+ - libffi=3.4.4=h6a678d5_0
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+ - libgcc-ng=11.2.0=h1234567_1
60
+ - libgomp=11.2.0=h1234567_1
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+ - libiconv=1.16=h7f8727e_2
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+ - libidn2=2.3.4=h5eee18b_0
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+ - libnpp=11.8.0.86=0
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+ - libnvjpeg=11.9.0.86=0
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+ - libpng=1.6.39=h5eee18b_0
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+ - libsodium=1.0.18=h7b6447c_0
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+ - libstdcxx-ng=11.2.0=h1234567_1
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+ - libtasn1=4.19.0=h5eee18b_0
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+ - libtiff=4.5.1=h6a678d5_0
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+ - libunistring=0.9.10=h27cfd23_0
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+ - libwebp=1.2.4=h11a3e52_1
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+ - libwebp-base=1.2.4=h5eee18b_1
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+ - lz4-c=1.9.4=h6a678d5_0
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+ - markupsafe=2.1.1=py38h7f8727e_0
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+ - matplotlib-inline=0.1.6=py38h06a4308_0
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+ - mkl=2023.1.0=h213fc3f_46343
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+ - mkl-service=2.4.0=py38h5eee18b_1
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+ - mkl_fft=1.3.6=py38h417a72b_1
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+ - mkl_random=1.2.2=py38h417a72b_1
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+ - mpc=1.1.0=h10f8cd9_1
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+ - mpfr=4.0.2=hb69a4c5_1
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+ - mpmath=1.3.0=py38h06a4308_0
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+ - ncurses=6.4=h6a678d5_0
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+ - nest-asyncio=1.5.6=py38h06a4308_0
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+ - nettle=3.7.3=hbbd107a_1
86
+ - networkx=3.1=py38h06a4308_0
87
+ - numpy=1.24.3=py38hf6e8229_1
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+ - numpy-base=1.24.3=py38h060ed82_1
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+ - openh264=2.1.1=h4ff587b_0
90
+ - openssl=3.0.10=h7f8727e_2
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+ - packaging=22.0=py38h06a4308_0
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+ - parso=0.8.3=pyhd3eb1b0_0
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+ - pexpect=4.8.0=pyhd3eb1b0_3
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+ - pickleshare=0.7.5=pyhd3eb1b0_1003
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+ - pillow=9.4.0=py38h6a678d5_0
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+ - pip=23.2.1=py38h06a4308_0
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+ - platformdirs=2.5.2=py38h06a4308_0
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+ - prompt-toolkit=3.0.36=py38h06a4308_0
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+ - ptyprocess=0.7.0=pyhd3eb1b0_2
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+ - pure_eval=0.2.2=pyhd3eb1b0_0
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+ - pycparser=2.21=pyhd3eb1b0_0
102
+ - pygments=2.11.2=pyhd3eb1b0_0
103
+ - pyopenssl=23.2.0=py38h06a4308_0
104
+ - pysocks=1.7.1=py38h06a4308_0
105
+ - python=3.8.17=h955ad1f_0
106
+ - python-dateutil=2.8.2=pyhd3eb1b0_0
107
+ - pytorch=2.0.1=py3.8_cuda11.8_cudnn8.7.0_0
108
+ - pytorch-cuda=11.8=h7e8668a_5
109
+ - pytorch-mutex=1.0=cuda
110
+ - pyzmq=23.2.0=py38h6a678d5_0
111
+ - readline=8.2=h5eee18b_0
112
+ - requests=2.31.0=py38h06a4308_0
113
+ - setuptools=68.0.0=py38h06a4308_0
114
+ - six=1.16.0=pyhd3eb1b0_1
115
+ - sqlite=3.41.2=h5eee18b_0
116
+ - stack_data=0.2.0=pyhd3eb1b0_0
117
+ - sympy=1.11.1=py38h06a4308_0
118
+ - tbb=2021.8.0=hdb19cb5_0
119
+ - tk=8.6.12=h1ccaba5_0
120
+ - torchaudio=2.0.2=py38_cu118
121
+ - torchtriton=2.0.0=py38
122
+ - torchvision=0.15.2=py38_cu118
123
+ - tornado=6.2=py38h5eee18b_0
124
+ - traitlets=5.7.1=py38h06a4308_0
125
+ - typing_extensions=4.7.1=py38h06a4308_0
126
+ - urllib3=1.26.16=py38h06a4308_0
127
+ - wcwidth=0.2.5=pyhd3eb1b0_0
128
+ - wheel=0.38.4=py38h06a4308_0
129
+ - xz=5.4.2=h5eee18b_0
130
+ - zeromq=4.3.4=h2531618_0
131
+ - zlib=1.2.13=h5eee18b_0
132
+ - zstd=1.5.5=hc292b87_0
133
+ - pip:
134
+ - accelerate==0.22.0
135
+ - appdirs==1.4.4
136
+ - attrs==23.1.0
137
+ - click==8.1.7
138
+ - datasets==2.14.5
139
+ - docker-pycreds==0.4.0
140
+ - fsspec==2023.9.0
141
+ - gitdb==4.0.10
142
+ - gitpython==3.1.35
143
+ - pathtools==0.1.2
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+ - peft==0.5.0
145
+ - protobuf==4.24.3
146
+ - psutil==5.9.5
147
+ - pyyaml==6.0.1
148
+ - scikit-learn==1.3.0
149
+ - sentry-sdk==1.30.0
150
+ - setproctitle==1.3.2
151
+ - smmap==5.0.0
152
+ - transformers==4.33.1
153
+ - wandb==0.15.10
154
+ prefix: /home/ubuntu/miniconda3/envs/esm2_binding_py38b