| //g++ -O3 -g0 -DNDEBUG sparse_product.cpp -I.. -I/home/gael/Coding/LinearAlgebra/mtl4/ -DDENSITY=0.005 -DSIZE=10000 && ./a.out | |
| //g++ -O3 -g0 -DNDEBUG sparse_product.cpp -I.. -I/home/gael/Coding/LinearAlgebra/mtl4/ -DDENSITY=0.05 -DSIZE=2000 && ./a.out | |
| // -DNOGMM -DNOMTL -DCSPARSE | |
| // -I /home/gael/Coding/LinearAlgebra/CSparse/Include/ /home/gael/Coding/LinearAlgebra/CSparse/Lib/libcsparse.a | |
| // #ifdef MKL | |
| // | |
| // #include "mkl_types.h" | |
| // #include "mkl_spblas.h" | |
| // | |
| // template<typename Lhs,typename Rhs,typename Res> | |
| // void mkl_multiply(const Lhs& lhs, const Rhs& rhs, Res& res) | |
| // { | |
| // char n = 'N'; | |
| // float alpha = 1; | |
| // char matdescra[6]; | |
| // matdescra[0] = 'G'; | |
| // matdescra[1] = 0; | |
| // matdescra[2] = 0; | |
| // matdescra[3] = 'C'; | |
| // mkl_scscmm(&n, lhs.rows(), rhs.cols(), lhs.cols(), &alpha, matdescra, | |
| // lhs._valuePtr(), lhs._innerIndexPtr(), lhs.outerIndexPtr(), | |
| // pntre, b, &ldb, &beta, c, &ldc); | |
| // // mkl_somatcopy('C', 'T', lhs.rows(), lhs.cols(), 1, | |
| // // lhs._valuePtr(), lhs.rows(), DST, dst_stride); | |
| // } | |
| // | |
| // #endif | |
| cs* cs_sorted_multiply(const cs* a, const cs* b) | |
| { | |
| // return cs_multiply(a,b); | |
| cs* A = cs_transpose(a, 1); | |
| cs* B = cs_transpose(b, 1); | |
| cs* D = cs_multiply(B,A); /* D = B'*A' */ | |
| cs_spfree (A) ; | |
| cs_spfree (B) ; | |
| cs_dropzeros (D) ; /* drop zeros from D */ | |
| cs* C = cs_transpose (D, 1) ; /* C = D', so that C is sorted */ | |
| cs_spfree (D) ; | |
| return C; | |
| // cs* A = cs_transpose(a, 1); | |
| // cs* C = cs_transpose(A, 1); | |
| // return C; | |
| } | |
| cs* cs_sorted_multiply2(const cs* a, const cs* b) | |
| { | |
| cs* D = cs_multiply(a,b); | |
| cs* E = cs_transpose(D,1); | |
| cs_spfree(D); | |
| cs* C = cs_transpose(E,1); | |
| cs_spfree(E); | |
| return C; | |
| } | |
| void bench_sort(); | |
| int main(int argc, char *argv[]) | |
| { | |
| // bench_sort(); | |
| int rows = SIZE; | |
| int cols = SIZE; | |
| float density = DENSITY; | |
| EigenSparseMatrix sm1(rows,cols), sm2(rows,cols), sm3(rows,cols), sm4(rows,cols); | |
| BenchTimer timer; | |
| for (int nnzPerCol = NNZPERCOL; nnzPerCol>1; nnzPerCol/=1.1) | |
| { | |
| sm1.setZero(); | |
| sm2.setZero(); | |
| fillMatrix2(nnzPerCol, rows, cols, sm1); | |
| fillMatrix2(nnzPerCol, rows, cols, sm2); | |
| // std::cerr << "filling OK\n"; | |
| // dense matrices | |
| { | |
| std::cout << "Eigen Dense\t" << nnzPerCol << "%\n"; | |
| DenseMatrix m1(rows,cols), m2(rows,cols), m3(rows,cols); | |
| eiToDense(sm1, m1); | |
| eiToDense(sm2, m2); | |
| timer.reset(); | |
| timer.start(); | |
| for (int k=0; k<REPEAT; ++k) | |
| m3 = m1 * m2; | |
| timer.stop(); | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| timer.reset(); | |
| timer.start(); | |
| for (int k=0; k<REPEAT; ++k) | |
| m3 = m1.transpose() * m2; | |
| timer.stop(); | |
| std::cout << " a' * b:\t" << timer.value() << endl; | |
| timer.reset(); | |
| timer.start(); | |
| for (int k=0; k<REPEAT; ++k) | |
| m3 = m1.transpose() * m2.transpose(); | |
| timer.stop(); | |
| std::cout << " a' * b':\t" << timer.value() << endl; | |
| timer.reset(); | |
| timer.start(); | |
| for (int k=0; k<REPEAT; ++k) | |
| m3 = m1 * m2.transpose(); | |
| timer.stop(); | |
| std::cout << " a * b':\t" << timer.value() << endl; | |
| } | |
| // eigen sparse matrices | |
| { | |
| std::cout << "Eigen sparse\t" << sm1.nonZeros()/(float(sm1.rows())*float(sm1.cols()))*100 << "% * " | |
| << sm2.nonZeros()/(float(sm2.rows())*float(sm2.cols()))*100 << "%\n"; | |
| BENCH(sm3 = sm1 * sm2; ) | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| // BENCH(sm3 = sm1.transpose() * sm2; ) | |
| // std::cout << " a' * b:\t" << timer.value() << endl; | |
| // // | |
| // BENCH(sm3 = sm1.transpose() * sm2.transpose(); ) | |
| // std::cout << " a' * b':\t" << timer.value() << endl; | |
| // // | |
| // BENCH(sm3 = sm1 * sm2.transpose(); ) | |
| // std::cout << " a * b' :\t" << timer.value() << endl; | |
| // std::cout << "\n"; | |
| // | |
| // BENCH( sm3._experimentalNewProduct(sm1, sm2); ) | |
| // std::cout << " a * b:\t" << timer.value() << endl; | |
| // | |
| // BENCH(sm3._experimentalNewProduct(sm1.transpose(),sm2); ) | |
| // std::cout << " a' * b:\t" << timer.value() << endl; | |
| // // | |
| // BENCH(sm3._experimentalNewProduct(sm1.transpose(),sm2.transpose()); ) | |
| // std::cout << " a' * b':\t" << timer.value() << endl; | |
| // // | |
| // BENCH(sm3._experimentalNewProduct(sm1, sm2.transpose());) | |
| // std::cout << " a * b' :\t" << timer.value() << endl; | |
| } | |
| // eigen dyn-sparse matrices | |
| /*{ | |
| DynamicSparseMatrix<Scalar> m1(sm1), m2(sm2), m3(sm3); | |
| std::cout << "Eigen dyn-sparse\t" << m1.nonZeros()/(float(m1.rows())*float(m1.cols()))*100 << "% * " | |
| << m2.nonZeros()/(float(m2.rows())*float(m2.cols()))*100 << "%\n"; | |
| // timer.reset(); | |
| // timer.start(); | |
| BENCH(for (int k=0; k<REPEAT; ++k) m3 = m1 * m2;) | |
| // timer.stop(); | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| // std::cout << sm3 << "\n"; | |
| timer.reset(); | |
| timer.start(); | |
| // std::cerr << "transpose...\n"; | |
| // EigenSparseMatrix sm4 = sm1.transpose(); | |
| // std::cout << sm4.nonZeros() << " == " << sm1.nonZeros() << "\n"; | |
| // exit(1); | |
| // std::cerr << "transpose OK\n"; | |
| // std::cout << sm1 << "\n\n" << sm1.transpose() << "\n\n" << sm4.transpose() << "\n\n"; | |
| BENCH(for (int k=0; k<REPEAT; ++k) m3 = m1.transpose() * m2;) | |
| // timer.stop(); | |
| std::cout << " a' * b:\t" << timer.value() << endl; | |
| // timer.reset(); | |
| // timer.start(); | |
| BENCH( for (int k=0; k<REPEAT; ++k) m3 = m1.transpose() * m2.transpose(); ) | |
| // timer.stop(); | |
| std::cout << " a' * b':\t" << timer.value() << endl; | |
| // timer.reset(); | |
| // timer.start(); | |
| BENCH( for (int k=0; k<REPEAT; ++k) m3 = m1 * m2.transpose(); ) | |
| // timer.stop(); | |
| std::cout << " a * b' :\t" << timer.value() << endl; | |
| }*/ | |
| // CSparse | |
| { | |
| std::cout << "CSparse \t" << nnzPerCol << "%\n"; | |
| cs *m1, *m2, *m3; | |
| eiToCSparse(sm1, m1); | |
| eiToCSparse(sm2, m2); | |
| BENCH( | |
| { | |
| m3 = cs_sorted_multiply(m1, m2); | |
| if (!m3) | |
| { | |
| std::cerr << "cs_multiply failed\n"; | |
| } | |
| // cs_print(m3, 0); | |
| cs_spfree(m3); | |
| } | |
| ); | |
| // timer.stop(); | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| // BENCH( { m3 = cs_sorted_multiply2(m1, m2); cs_spfree(m3); } ); | |
| // std::cout << " a * b:\t" << timer.value() << endl; | |
| } | |
| { | |
| std::cout << "ublas\t" << nnzPerCol << "%\n"; | |
| UBlasSparse m1(rows,cols), m2(rows,cols), m3(rows,cols); | |
| eiToUblas(sm1, m1); | |
| eiToUblas(sm2, m2); | |
| BENCH(boost::numeric::ublas::prod(m1, m2, m3);); | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| } | |
| // GMM++ | |
| { | |
| std::cout << "GMM++ sparse\t" << nnzPerCol << "%\n"; | |
| GmmDynSparse gmmT3(rows,cols); | |
| GmmSparse m1(rows,cols), m2(rows,cols), m3(rows,cols); | |
| eiToGmm(sm1, m1); | |
| eiToGmm(sm2, m2); | |
| BENCH(gmm::mult(m1, m2, gmmT3);); | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| // BENCH(gmm::mult(gmm::transposed(m1), m2, gmmT3);); | |
| // std::cout << " a' * b:\t" << timer.value() << endl; | |
| // | |
| // if (rows<500) | |
| // { | |
| // BENCH(gmm::mult(gmm::transposed(m1), gmm::transposed(m2), gmmT3);); | |
| // std::cout << " a' * b':\t" << timer.value() << endl; | |
| // | |
| // BENCH(gmm::mult(m1, gmm::transposed(m2), gmmT3);); | |
| // std::cout << " a * b':\t" << timer.value() << endl; | |
| // } | |
| // else | |
| // { | |
| // std::cout << " a' * b':\t" << "forever" << endl; | |
| // std::cout << " a * b':\t" << "forever" << endl; | |
| // } | |
| } | |
| // MTL4 | |
| { | |
| std::cout << "MTL4\t" << nnzPerCol << "%\n"; | |
| MtlSparse m1(rows,cols), m2(rows,cols), m3(rows,cols); | |
| eiToMtl(sm1, m1); | |
| eiToMtl(sm2, m2); | |
| BENCH(m3 = m1 * m2;); | |
| std::cout << " a * b:\t" << timer.value() << endl; | |
| // BENCH(m3 = trans(m1) * m2;); | |
| // std::cout << " a' * b:\t" << timer.value() << endl; | |
| // | |
| // BENCH(m3 = trans(m1) * trans(m2);); | |
| // std::cout << " a' * b':\t" << timer.value() << endl; | |
| // | |
| // BENCH(m3 = m1 * trans(m2);); | |
| // std::cout << " a * b' :\t" << timer.value() << endl; | |
| } | |
| std::cout << "\n\n"; | |
| } | |
| return 0; | |
| } | |