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  <h1 align="center">SwinUNETR</h1>
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- ### *Trained by Margerie Huet Dastarac*
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- ### *Training date: November2023*
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  <h1 align="center">SwinUNETR</h1>
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+ *Trained by Margerie Huet Dastarac*
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+ *Training date: November2023*
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+ ## 1. Task Description
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+ Segmentation of the body on the CT scan on a datasheet of 60 oropharyngeal patients. This model can be used to clean CT scans by setting voxels value outside of the body contour to air, a typical preprocessing step for other networks.
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+
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+ ## 2. Model
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+ ### 2.1. Architecture
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+ * Figure 1: SwinUNETR architecture *
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+ ### 2.2. Input
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+ + CT
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+ ### 2.3. Output
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+ + BODY
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+ ### 2.4 Training details
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+ + Number of epoch: 300
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+ + Loss function: Dice loss
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+ + Optimizer: Adam
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+ + Learning Rate: 3e-4
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+ + Dropout: No
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+ + Patch size in voxels: (128,128,128)
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+ + Data augmentation used:
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+ - RandSpatialCropd
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+ - RandFlipd axis=0
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+ - RandFlipd axis=1
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+ - RandFlipd axis=2
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+ - NormalizeIntensityd
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+ - RandScaleIntensityd factors=0.1 prob=1.0
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+ ## 3. Dataset
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+ + Location: Head and neck, oropharynx
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+ + Training set size: 60
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+ + Data type: CT scan and body contours
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+ + Resolution in mm: 3x3x3
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+ + Preprocessing
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+ ## Performance
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+ +TBD