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README.md
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<h1 align="center">SwinUNETR</h1>
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<h1 align="center">SwinUNETR</h1>
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*Trained by Margerie Huet Dastarac*
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*Training date: November2023*
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## 1. Task Description
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Segmentation of the body on the CT scan on a datasheet of 60 oropharyngeal patients. This model can be used to clean CT scans by setting voxels value outside of the body contour to air, a typical preprocessing step for other networks.
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## 2. Model
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### 2.1. Architecture
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* Figure 1: SwinUNETR architecture *
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### 2.2. Input
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+ CT
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### 2.3. Output
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+ BODY
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### 2.4 Training details
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+ Number of epoch: 300
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+ Loss function: Dice loss
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+ Optimizer: Adam
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+ Learning Rate: 3e-4
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+ Dropout: No
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+ Patch size in voxels: (128,128,128)
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+ Data augmentation used:
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- RandSpatialCropd
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- RandFlipd axis=0
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- RandFlipd axis=1
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- RandFlipd axis=2
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- NormalizeIntensityd
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- RandScaleIntensityd factors=0.1 prob=1.0
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## 3. Dataset
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+ Location: Head and neck, oropharynx
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+ Training set size: 60
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+ Data type: CT scan and body contours
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+ Resolution in mm: 3x3x3
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+ Preprocessing
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## Performance
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+TBD
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