# coding=utf-8
# Copyright 2020 Google Research and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch TAPAS model. """
import enum
import math
import os
from dataclasses import dataclass
from typing import Optional, Tuple
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...file_utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scatter_available,
replace_return_docstrings,
requires_backends,
)
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling, MaskedLMOutput, SequenceClassifierOutput
from ...modeling_utils import (
PreTrainedModel,
apply_chunking_to_forward,
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from ...utils import logging
from .configuration_tapas import TapasConfig
logger = logging.get_logger(__name__)
# soft dependency
if is_scatter_available():
try:
from torch_scatter import scatter
except OSError:
logger.error(
"TAPAS models are not usable since `torch_scatter` can't be loaded."
"It seems you have `torch_scatter` installed with the wrong CUDA version."
"Please try to reinstall it following the instructions here: https://github.com/rusty1s/pytorch_scatter."
)
_CONFIG_FOR_DOC = "TapasConfig"
_TOKENIZER_FOR_DOC = "TapasTokenizer"
_TOKENIZER_FOR_DOC = "google/tapas-base"
_CHECKPOINT_FOR_DOC = "google/tapas-base"
TAPAS_PRETRAINED_MODEL_ARCHIVE_LIST = [
# large models
"google/tapas-large",
"google/tapas-large-finetuned-sqa",
"google/tapas-large-finetuned-wtq",
"google/tapas-large-finetuned-wikisql-supervised",
"google/tapas-large-finetuned-tabfact",
# base models
"google/tapas-base",
"google/tapas-base-finetuned-sqa",
"google/tapas-base-finetuned-wtq",
"google/tapas-base-finetuned-wikisql-supervised",
"google/tapas-base-finetuned-tabfact",
# small models
"google/tapas-small",
"google/tapas-small-finetuned-sqa",
"google/tapas-small-finetuned-wtq",
"google/tapas-small-finetuned-wikisql-supervised",
"google/tapas-small-finetuned-tabfact",
# mini models
"google/tapas-mini",
"google/tapas-mini-finetuned-sqa",
"google/tapas-mini-finetuned-wtq",
"google/tapas-mini-finetuned-wikisql-supervised",
"google/tapas-mini-finetuned-tabfact",
# tiny models
"google/tapas-tiny",
"google/tapas-tiny-finetuned-sqa",
"google/tapas-tiny-finetuned-wtq",
"google/tapas-tiny-finetuned-wikisql-supervised",
"google/tapas-tiny-finetuned-tabfact",
# See all TAPAS models at https://huggingface.co/models?filter=tapas
]
EPSILON_ZERO_DIVISION = 1e-10
CLOSE_ENOUGH_TO_LOG_ZERO = -10000.0
[docs]@dataclass
class TableQuestionAnsweringOutput(ModelOutput):
"""
Output type of :class:`~transformers.TapasForQuestionAnswering`.
Args:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`labels` (and possibly :obj:`answer`, :obj:`aggregation_labels`, :obj:`numeric_values` and :obj:`numeric_values_scale` are provided)):
Total loss as the sum of the hierarchical cell selection log-likelihood loss and (optionally) the
semi-supervised regression loss and (optionally) supervised loss for aggregations.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`):
Prediction scores of the cell selection head, for every token.
logits_aggregation (:obj:`torch.FloatTensor`, `optional`, of shape :obj:`(batch_size, num_aggregation_labels)`):
Prediction scores of the aggregation head, for every aggregation operator.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`. Hidden-states of the model at the output of
each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape :obj:`(batch_size, num_heads,
sequence_length, sequence_length)`. Attentions weights after the attention softmax, used to compute the
weighted average in the self-attention heads.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
logits_aggregation: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
def load_tf_weights_in_tapas(model, config, tf_checkpoint_path):
"""
Load tf checkpoints in a PyTorch model. This is an adaptation from load_tf_weights_in_bert
- add cell selection and aggregation heads
- take into account additional token type embedding layers
"""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculate m and v
# which are not required for using pretrained model
if any(
n
in [
"adam_v",
"adam_m",
"AdamWeightDecayOptimizer",
"AdamWeightDecayOptimizer_1",
"global_step",
"seq_relationship",
]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
# in case the model is TapasForSequenceClassification, we skip output_bias and output_weights
# since these are not used for classification
if isinstance(model, TapasForSequenceClassification):
if any(n in ["output_bias", "output_weights"] for n in name):
logger.info(f"Skipping {'/'.join(name)}")
continue
# in case the model is TapasModel, we skip output_bias, output_weights, output_bias_cls and output_weights_cls
# since this model does not have MLM and NSP heads
if isinstance(model, TapasModel):
if any(n in ["output_bias", "output_weights", "output_bias_cls", "output_weights_cls"] for n in name):
logger.info(f"Skipping {'/'.join(name)}")
continue
# in case the model is TapasForMaskedLM, we skip the pooler
if isinstance(model, TapasForMaskedLM):
if any(n in ["pooler"] for n in name):
logger.info(f"Skipping {'/'.join(name)}")
continue
# if first scope name starts with "bert", change it to "tapas"
if name[0] == "bert":
name[0] = "tapas"
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
# cell selection heads
elif scope_names[0] == "output_bias":
if not isinstance(model, TapasForMaskedLM):
pointer = getattr(pointer, "output_bias")
else:
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "output_weights")
elif scope_names[0] == "column_output_bias":
pointer = getattr(pointer, "column_output_bias")
elif scope_names[0] == "column_output_weights":
pointer = getattr(pointer, "column_output_weights")
# aggregation head
elif scope_names[0] == "output_bias_agg":
pointer = getattr(pointer, "aggregation_classifier")
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights_agg":
pointer = getattr(pointer, "aggregation_classifier")
pointer = getattr(pointer, "weight")
# classification head
elif scope_names[0] == "output_bias_cls":
pointer = getattr(pointer, "classifier")
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights_cls":
pointer = getattr(pointer, "classifier")
pointer = getattr(pointer, "weight")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name[-13:] in [f"_embeddings_{i}" for i in range(7)]:
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
# Added a check to see whether the array is a scalar (because bias terms in Tapas checkpoints can be
# scalar => should first be converted to numpy arrays)
if np.isscalar(array):
array = np.array(array)
pointer.data = torch.from_numpy(array)
return model
class TapasEmbeddings(nn.Module):
"""
Construct the embeddings from word, position and token_type embeddings. Same as BertEmbeddings but with a number of
additional token type embeddings to encode tabular structure.
"""
def __init__(self, config):
super().__init__()
# we do not include config.disabled_features and config.disable_position_embeddings from the original implementation
# word embeddings
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
# position embeddings
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
# token type embeddings
for i, type_vocab_sizes in enumerate(config.type_vocab_sizes):
name = f"token_type_embeddings_{i}"
setattr(self, name, nn.Embedding(type_vocab_sizes, config.hidden_size))
self.number_of_token_type_embeddings = len(config.type_vocab_sizes)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.config = config
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if position_ids is None:
# create absolute position embeddings
position_ids = torch.arange(seq_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).expand(input_shape)
# when self.config.reset_position_index_per_cell is set to True, create relative position embeddings
if self.config.reset_position_index_per_cell:
# shape (batch_size, seq_len)
col_index = IndexMap(token_type_ids[:, :, 1], self.config.type_vocab_sizes[1], batch_dims=1)
# shape (batch_size, seq_len)
row_index = IndexMap(token_type_ids[:, :, 2], self.config.type_vocab_sizes[2], batch_dims=1)
# shape (batch_size, seq_len)
full_index = ProductIndexMap(col_index, row_index)
# shape (max_rows * max_columns,). First absolute position for every cell
first_position_per_segment = reduce_min(position_ids, full_index)[0]
# ? shape (batch_size, seq_len). First absolute position of the cell for every token
first_position = gather(first_position_per_segment, full_index)
# shape (1, seq_len)
position = torch.arange(seq_length, dtype=torch.long, device=device).unsqueeze(0)
position_ids = torch.min(
torch.as_tensor(self.config.max_position_embeddings - 1, device=device), position - first_position
)
if token_type_ids is None:
token_type_ids = torch.zeros(
(input_shape + self.number_of_token_type_embeddings), dtype=torch.long, device=device
)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
position_embeddings = self.position_embeddings(position_ids)
embeddings = inputs_embeds + position_embeddings
for i in range(self.number_of_token_type_embeddings):
name = f"token_type_embeddings_{i}"
embeddings += getattr(self, name)(token_type_ids[:, :, i])
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class TapasSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size {config.hidden_size} is not a multiple of the number of attention "
f"heads {config.num_attention_heads}"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
if self.is_decoder:
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in TapasModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.Softmax(dim=-1)(attention_scores)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput
class TapasSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertAttention with Bert->Tapas
class TapasAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = TapasSelfAttention(config)
self.output = TapasSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate
class TapasIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput
class TapasOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLayer with Bert->Tapas
class TapasLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TapasAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
assert self.is_decoder, f"{self} should be used as a decoder model if cross attention is added"
self.crossattention = TapasAttention(config)
self.intermediate = TapasIntermediate(config)
self.output = TapasOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_value=None,
output_attentions=False,
):
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
assert hasattr(
self, "crossattention"
), f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers by setting `config.add_cross_attention=True`"
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class TapasEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([TapasLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if self.gradient_checkpointing and self.training:
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_values, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_values,
output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return BaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class TapasPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
# Copied from transformers.models.bert.modeling_bert.BertPredictionHeadTransform with Bert->Tapas
class TapasPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLMPredictionHead with Bert->Tapas
class TapasLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = TapasPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOnlyMLMHead with Bert->Tapas
class TapasOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = TapasLMPredictionHead(config)
def forward(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
class TapasPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = TapasConfig
base_model_prefix = "tapas"
supports_gradient_checkpointing = True
# Copied from transformers.models.bert.modeling_bert.BertPreTrainedModel._init_weights
def _init_weights(self, module):
"""Initialize the weights"""
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def _set_gradient_checkpointing(self, module, value=False):
if isinstance(module, TapasEncoder):
module.gradient_checkpointing = value
TAPAS_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.PreTrainedModel`. Check the superclass documentation for the generic
methods the library implements for all its models (such as downloading or saving, resizing the input embeddings,
pruning heads etc.)
This model is also a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`__
subclass. Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to
general usage and behavior.
Parameters:
config (:class:`~transformers.TapasConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
TAPAS_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary. Indices can be obtained using
:class:`~transformers.TapasTokenizer`. See :meth:`transformers.PreTrainedTokenizer.encode` and
:meth:`transformers.PreTrainedTokenizer.__call__` for details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`({0}, 7)`, `optional`):
Token indices that encode tabular structure. Indices can be obtained using
:class:`~transformers.TapasTokenizer`. See this class for more info.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. If
``reset_position_index_per_cell`` of :class:`~transformers.TapasConfig` is set to ``True``, relative
position embeddings will be used. Selected in the range ``[0, config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``: - 1
indicates the head is **not masked**, - 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
[docs]@add_start_docstrings(
"The bare Tapas Model transformer outputting raw hidden-states without any specific head on top.",
TAPAS_START_DOCSTRING,
)
class TapasModel(TapasPreTrainedModel):
"""
This class is a small change compared to :class:`~transformers.BertModel`, taking into account the additional token
type ids.
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in `Attention is
all you need <https://arxiv.org/abs/1706.03762>`__ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
"""
def __init__(self, config, add_pooling_layer=True):
requires_backends(self, "scatter")
super().__init__(config)
self.config = config
self.embeddings = TapasEmbeddings(config)
self.encoder = TapasEncoder(config)
self.pooler = TapasPooler(config) if add_pooling_layer else None
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
[docs] @add_start_docstrings_to_model_forward(TAPAS_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=BaseModelOutputWithPooling, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Returns:
Examples::
>>> from transformers import TapasTokenizer, TapasModel
>>> import pandas as pd
>>> tokenizer = TapasTokenizer.from_pretrained('google/tapas-base')
>>> model = TapasModel.from_pretrained('google/tapas-base')
>>> data = {'Actors': ["Brad Pitt", "Leonardo Di Caprio", "George Clooney"],
... 'Age': ["56", "45", "59"],
... 'Number of movies': ["87", "53", "69"]
... }
>>> table = pd.DataFrame.from_dict(data)
>>> queries = ["How many movies has George Clooney played in?", "How old is Brad Pitt?"]
>>> inputs = tokenizer(table=table, queries=queries, padding="max_length", return_tensors="pt")
>>> outputs = model(**inputs)
>>> last_hidden_states = outputs.last_hidden_state
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(
(*input_shape, len(self.config.type_vocab_sizes)), dtype=torch.long, device=device
)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastabe to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPooling(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
[docs]@add_start_docstrings(
"""
Tapas Model with a cell selection head and optional aggregation head on top for question-answering tasks on tables
(linear layers on top of the hidden-states output to compute `logits` and optional `logits_aggregation`), e.g. for
SQA, WTQ or WikiSQL-supervised tasks.
""",
TAPAS_START_DOCSTRING,
)
class TapasForQuestionAnswering(TapasPreTrainedModel):
def __init__(self, config: TapasConfig):
super().__init__(config)
# base model
self.tapas = TapasModel(config)
# dropout (only used when training)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# cell selection heads
if config.init_cell_selection_weights_to_zero:
# init_cell_selection_weights_to_zero: Whether the initial weights should be
# set to 0. This ensures that all tokens have the same prior probability.
self.output_weights = nn.Parameter(torch.zeros(config.hidden_size))
self.column_output_weights = nn.Parameter(torch.zeros(config.hidden_size))
else:
self.output_weights = nn.Parameter(torch.empty(config.hidden_size))
nn.init.normal_(
self.output_weights, std=config.initializer_range
) # here, a truncated normal is used in the original implementation
self.column_output_weights = nn.Parameter(torch.empty(config.hidden_size))
nn.init.normal_(
self.column_output_weights, std=config.initializer_range
) # here, a truncated normal is used in the original implementation
self.output_bias = nn.Parameter(torch.zeros([]))
self.column_output_bias = nn.Parameter(torch.zeros([]))
# aggregation head
if config.num_aggregation_labels > 0:
self.aggregation_classifier = nn.Linear(config.hidden_size, config.num_aggregation_labels)
self.init_weights()
[docs] @add_start_docstrings_to_model_forward(TAPAS_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=TableQuestionAnsweringOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
table_mask=None,
labels=None,
aggregation_labels=None,
float_answer=None,
numeric_values=None,
numeric_values_scale=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
table_mask (:obj:`torch.LongTensor` of shape :obj:`(batch_size, seq_length)`, `optional`):
Mask for the table. Indicates which tokens belong to the table (1). Question tokens, table headers and
padding are 0.
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, seq_length)`, `optional`):
Labels per token for computing the hierarchical cell selection loss. This encodes the positions of the
answer appearing in the table. Can be obtained using :class:`~transformers.TapasTokenizer`.
- 1 for tokens that are **part of the answer**,
- 0 for tokens that are **not part of the answer**.
aggregation_labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, )`, `optional`):
Aggregation function index for every example in the batch for computing the aggregation loss. Indices
should be in :obj:`[0, ..., config.num_aggregation_labels - 1]`. Only required in case of strong
supervision for aggregation (WikiSQL-supervised).
float_answer (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, )`, `optional`):
Float answer for every example in the batch. Set to `float('nan')` for cell selection questions. Only
required in case of weak supervision (WTQ) to calculate the aggregate mask and regression loss.
numeric_values (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`, `optional`):
Numeric values of every token, NaN for tokens which are not numeric values. Can be obtained using
:class:`~transformers.TapasTokenizer`. Only required in case of weak supervision for aggregation (WTQ) to
calculate the regression loss.
numeric_values_scale (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`, `optional`):
Scale of the numeric values of every token. Can be obtained using :class:`~transformers.TapasTokenizer`.
Only required in case of weak supervision for aggregation (WTQ) to calculate the regression loss.
Returns:
Examples::
>>> from transformers import TapasTokenizer, TapasForQuestionAnswering
>>> import pandas as pd
>>> tokenizer = TapasTokenizer.from_pretrained('google/tapas-base-finetuned-wtq')
>>> model = TapasForQuestionAnswering.from_pretrained('google/tapas-base-finetuned-wtq')
>>> data = {'Actors': ["Brad Pitt", "Leonardo Di Caprio", "George Clooney"],
... 'Age': ["56", "45", "59"],
... 'Number of movies': ["87", "53", "69"]
... }
>>> table = pd.DataFrame.from_dict(data)
>>> queries = ["How many movies has George Clooney played in?", "How old is Brad Pitt?"]
>>> inputs = tokenizer(table=table, queries=queries, padding="max_length", return_tensors="pt")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
>>> logits_aggregation = outputs.logits_aggregation
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.tapas(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
pooled_output = outputs[1]
sequence_output = self.dropout(sequence_output)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
# Construct indices for the table.
if token_type_ids is None:
token_type_ids = torch.zeros(
(*input_shape, len(self.config.type_vocab_sizes)), dtype=torch.long, device=device
)
token_types = [
"segment_ids",
"column_ids",
"row_ids",
"prev_labels",
"column_ranks",
"inv_column_ranks",
"numeric_relations",
]
row_ids = token_type_ids[:, :, token_types.index("row_ids")]
column_ids = token_type_ids[:, :, token_types.index("column_ids")]
row_index = IndexMap(
indices=torch.min(row_ids, torch.as_tensor(self.config.max_num_rows - 1, device=row_ids.device)),
num_segments=self.config.max_num_rows,
batch_dims=1,
)
col_index = IndexMap(
indices=torch.min(column_ids, torch.as_tensor(self.config.max_num_columns - 1, device=column_ids.device)),
num_segments=self.config.max_num_columns,
batch_dims=1,
)
cell_index = ProductIndexMap(row_index, col_index)
# Masks.
input_shape = input_ids.size() if input_ids is not None else inputs_embeds.size()[:-1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
# Table cells only, without question tokens and table headers.
if table_mask is None:
table_mask = torch.where(row_ids > 0, torch.ones_like(row_ids), torch.zeros_like(row_ids))
# torch.FloatTensor[batch_size, seq_length]
input_mask_float = attention_mask.float().to(device)
table_mask_float = table_mask.float().to(device)
# Mask for cells that exist in the table (i.e. that are not padding).
cell_mask, _ = reduce_mean(input_mask_float, cell_index)
# Compute logits per token. These are used to select individual cells.
logits = compute_token_logits(sequence_output, self.config.temperature, self.output_weights, self.output_bias)
# Compute logits per column. These are used to select a column.
column_logits = None
if self.config.select_one_column:
column_logits = compute_column_logits(
sequence_output,
self.column_output_weights,
self.column_output_bias,
cell_index,
cell_mask,
self.config.allow_empty_column_selection,
)
# Aggregation logits
logits_aggregation = None
if self.config.num_aggregation_labels > 0:
logits_aggregation = self.aggregation_classifier(pooled_output)
# Total loss calculation
total_loss = 0.0
calculate_loss = False
if labels is not None:
calculate_loss = True
is_supervised = not self.config.num_aggregation_labels > 0 or not self.config.use_answer_as_supervision
# Semi-supervised cell selection in case of no aggregation:
# If the answer (the denotation) appears directly in the table we might
# select the answer without applying any aggregation function. There are
# some ambiguous cases, see utils._calculate_aggregate_mask for more info.
# `aggregate_mask` is 1 for examples where we chose to aggregate and 0
# for examples where we chose to select the answer directly.
# `labels` encodes the positions of the answer appearing in the table.
if is_supervised:
aggregate_mask = None
else:
if float_answer is not None:
assert (
labels.shape[0] == float_answer.shape[0]
), "Make sure the answers are a FloatTensor of shape (batch_size,)"
# <float32>[batch_size]
aggregate_mask = _calculate_aggregate_mask(
float_answer,
pooled_output,
self.config.cell_selection_preference,
labels,
self.aggregation_classifier,
)
else:
raise ValueError("You have to specify float answers in order to calculate the aggregate mask")
# Cell selection log-likelihood
if self.config.average_logits_per_cell:
logits_per_cell, _ = reduce_mean(logits, cell_index)
logits = gather(logits_per_cell, cell_index)
dist_per_token = torch.distributions.Bernoulli(logits=logits)
# Compute cell selection loss per example.
selection_loss_per_example = None
if not self.config.select_one_column:
weight = torch.where(
labels == 0,
torch.ones_like(labels, dtype=torch.float32),
self.config.positive_label_weight * torch.ones_like(labels, dtype=torch.float32),
)
selection_loss_per_token = -dist_per_token.log_prob(labels) * weight
selection_loss_per_example = torch.sum(selection_loss_per_token * input_mask_float, dim=1) / (
torch.sum(input_mask_float, dim=1) + EPSILON_ZERO_DIVISION
)
else:
selection_loss_per_example, logits = _single_column_cell_selection_loss(
logits, column_logits, labels, cell_index, col_index, cell_mask
)
dist_per_token = torch.distributions.Bernoulli(logits=logits)
# Supervised cell selection
if self.config.disable_per_token_loss:
pass
elif is_supervised:
total_loss += torch.mean(selection_loss_per_example)
else:
# For the not supervised case, do not assign loss for cell selection
total_loss += torch.mean(selection_loss_per_example * (1.0 - aggregate_mask))
# Semi-supervised regression loss and supervised loss for aggregations
if self.config.num_aggregation_labels > 0:
if is_supervised:
# Note that `aggregate_mask` is None if the setting is supervised.
if aggregation_labels is not None:
assert (
labels.shape[0] == aggregation_labels.shape[0]
), "Make sure the aggregation labels are a LongTensor of shape (batch_size,)"
per_example_additional_loss = _calculate_aggregation_loss(
logits_aggregation,
aggregate_mask,
aggregation_labels,
self.config.use_answer_as_supervision,
self.config.num_aggregation_labels,
self.config.aggregation_loss_weight,
)
else:
raise ValueError(
"You have to specify aggregation labels in order to calculate the aggregation loss"
)
else:
# Set aggregation labels to zeros
aggregation_labels = torch.zeros(labels.shape[0], dtype=torch.long, device=labels.device)
per_example_additional_loss = _calculate_aggregation_loss(
logits_aggregation,
aggregate_mask,
aggregation_labels,
self.config.use_answer_as_supervision,
self.config.num_aggregation_labels,
self.config.aggregation_loss_weight,
)
if self.config.use_answer_as_supervision:
if numeric_values is not None and numeric_values_scale is not None:
assert numeric_values.shape == numeric_values_scale.shape
# Add regression loss for numeric answers which require aggregation.
answer_loss, large_answer_loss_mask = _calculate_regression_loss(
float_answer,
aggregate_mask,
dist_per_token,
numeric_values,
numeric_values_scale,
table_mask_float,
logits_aggregation,
self.config,
)
per_example_additional_loss += answer_loss
# Zero loss for examples with answer_loss > cutoff.
per_example_additional_loss *= large_answer_loss_mask
else:
raise ValueError(
"You have to specify numeric values and numeric values scale in order to calculate the regression loss"
)
total_loss += torch.mean(per_example_additional_loss)
else:
# if no label ids are provided, set them to zeros in order to properly compute logits
labels = torch.zeros_like(logits)
_, logits = _single_column_cell_selection_loss(
logits, column_logits, labels, cell_index, col_index, cell_mask
)
if not return_dict:
output = (logits, logits_aggregation) + outputs[2:]
return ((total_loss,) + output) if calculate_loss else output
return TableQuestionAnsweringOutput(
loss=total_loss if calculate_loss else None,
logits=logits,
logits_aggregation=logits_aggregation,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
[docs]@add_start_docstrings(
"""
Tapas Model with a sequence classification head on top (a linear layer on top of the pooled output), e.g. for table
entailment tasks, such as TabFact (Chen et al., 2020).
""",
TAPAS_START_DOCSTRING,
)
class TapasForSequenceClassification(TapasPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.tapas = TapasModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
[docs] @add_start_docstrings_to_model_forward(TAPAS_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=SequenceClassifierOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy). Note: this is called
"classification_class_index" in the original implementation.
Returns:
Examples::
>>> from transformers import TapasTokenizer, TapasForSequenceClassification
>>> import torch
>>> import pandas as pd
>>> tokenizer = TapasTokenizer.from_pretrained('google/tapas-base-finetuned-tabfact')
>>> model = TapasForSequenceClassification.from_pretrained('google/tapas-base-finetuned-tabfact')
>>> data = {'Actors': ["Brad Pitt", "Leonardo Di Caprio", "George Clooney"],
... 'Age': ["56", "45", "59"],
... 'Number of movies': ["87", "53", "69"]
... }
>>> table = pd.DataFrame.from_dict(data)
>>> queries = ["There is only one actor who is 45 years old", "There are 3 actors which played in more than 60 movies"]
>>> inputs = tokenizer(table=table, queries=queries, padding="max_length", return_tensors="pt")
>>> labels = torch.tensor([1, 0]) # 1 means entailed, 0 means refuted
>>> outputs = model(**inputs, labels=labels)
>>> loss = outputs.loss
>>> logits = outputs.logits
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.tapas(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
loss = None
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
""" TAPAS utilities."""
class AverageApproximationFunction(str, enum.Enum):
RATIO = "ratio"
FIRST_ORDER = "first_order"
SECOND_ORDER = "second_order"
# Beginning of everything related to segmented tensors
class IndexMap(object):
"""Index grouping entries within a tensor."""
def __init__(self, indices, num_segments, batch_dims=0):
"""
Creates an index
Args:
indices (:obj:`torch.LongTensor`, same shape as a `values` Tensor to which the indices refer):
Tensor containing the indices.
num_segments (:obj:`torch.LongTensor`):
Scalar tensor, the number of segments. All elements in a batched segmented tensor must have the same
number of segments (although many segments can be empty).
batch_dims (:obj:`int`, `optional`, defaults to 0):
The number of batch dimensions. The first `batch_dims` dimensions of a SegmentedTensor are treated as
batch dimensions. Segments in different batch elements are always distinct even if they have the same
index.
"""
self.indices = torch.as_tensor(indices)
self.num_segments = torch.as_tensor(num_segments, device=indices.device)
self.batch_dims = batch_dims
def batch_shape(self):
return self.indices.size()[: self.batch_dims] # returns a torch.Size object
class ProductIndexMap(IndexMap):
"""The product of two indices."""
def __init__(self, outer_index, inner_index):
"""
Combines indices i and j into pairs (i, j). The result is an index where each segment (i, j) is the
intersection of segments i and j. For example if the inputs represent table cells indexed by respectively rows
and columns the output will be a table indexed by (row, column) pairs, i.e. by cell. The implementation
combines indices {0, .., n - 1} and {0, .., m - 1} into {0, .., nm - 1}. The output has `num_segments` equal to
`outer_index.num_segments` * `inner_index.num_segments`
Args:
outer_index (:obj:`IndexMap`):
IndexMap.
inner_index (:obj:`IndexMap`):
IndexMap, must have the same shape as `outer_index`.
"""
if outer_index.batch_dims != inner_index.batch_dims:
raise ValueError("outer_index.batch_dims and inner_index.batch_dims must be the same.")
super().__init__(
indices=(inner_index.indices + outer_index.indices * inner_index.num_segments),
num_segments=inner_index.num_segments * outer_index.num_segments,
batch_dims=inner_index.batch_dims,
)
self.outer_index = outer_index
self.inner_index = inner_index
def project_outer(self, index):
"""Projects an index with the same index set onto the outer components."""
return IndexMap(
indices=(index.indices // self.inner_index.num_segments).type(torch.float).floor().type(torch.long),
num_segments=self.outer_index.num_segments,
batch_dims=index.batch_dims,
)
def project_inner(self, index):
"""Projects an index with the same index set onto the inner components."""
return IndexMap(
indices=torch.fmod(index.indices, self.inner_index.num_segments)
.type(torch.float)
.floor()
.type(torch.long),
num_segments=self.inner_index.num_segments,
batch_dims=index.batch_dims,
)
def gather(values, index, name="segmented_gather"):
"""
Gathers from `values` using the index map. For each element in the domain of the index map this operation looks up
a value for that index in `values`. Two elements from the same segment always get assigned the same value.
Args:
values (:obj:`torch.Tensor` of shape (B1, ..., Bn, num_segments, V1, ...)):
Tensor with segment values.
index (:obj:`IndexMap` of shape (B1, ..., Bn, I1, ..., Ik)):
IndexMap.
name (:obj:`str`, `optional`, defaults to 'segmented_gather'):
Name for the operation. Currently not used
Returns:
:obj:`tuple(torch.Tensor)`: Tensor of shape (B1, ..., Bn, I1, ..., Ik, V1, ...) with the gathered values.
"""
indices = index.indices
# first, check whether the indices of the index represent scalar values (i.e. not vectorized)
if len(values.shape[index.batch_dims :]) < 2:
return torch.gather(
values,
index.batch_dims,
indices.view(
values.size()[0], -1
), # torch.gather expects index to have the same number of dimensions as values
).view(indices.size())
else:
# this means we have a vectorized version
# we have to adjust the index
indices = indices.unsqueeze(-1).expand(values.shape)
return torch.gather(values, index.batch_dims, indices)
def flatten(index, name="segmented_flatten"):
"""
Flattens a batched index map (which is typically of shape batch_size, seq_length) to a 1d index map. This operation
relabels the segments to keep batch elements distinct. The k-th batch element will have indices shifted by
`num_segments` * (k - 1). The result is a tensor with `num_segments` multiplied by the number of elements in the
batch.
Args:
index (:obj:`IndexMap`):
IndexMap to flatten.
name (:obj:`str`, `optional`, defaults to 'segmented_flatten'):
Name for the operation. Currently not used
Returns:
(:obj:`IndexMap`): The flattened IndexMap.
"""
# first, get batch_size as scalar tensor
batch_size = torch.prod(torch.tensor(list(index.batch_shape())))
# next, create offset as 1-D tensor of length batch_size,
# and multiply element-wise by num segments (to offset different elements in the batch) e.g. if batch size is 2: [0, 64]
offset = torch.arange(start=0, end=batch_size, device=index.num_segments.device) * index.num_segments
offset = offset.view(index.batch_shape())
for _ in range(index.batch_dims, len(index.indices.size())): # typically range(1,2)
offset = offset.unsqueeze(-1)
indices = offset + index.indices
return IndexMap(indices=indices.view(-1), num_segments=index.num_segments * batch_size, batch_dims=0)
def range_index_map(batch_shape, num_segments, name="range_index_map"):
"""
Constructs an index map equal to range(num_segments).
Args:
batch_shape (:obj:`torch.Size`):
Batch shape
num_segments (:obj:`int`):
Number of segments
name (:obj:`str`, `optional`, defaults to 'range_index_map'):
Name for the operation. Currently not used
Returns:
(:obj:`IndexMap`): IndexMap of shape batch_shape with elements equal to range(num_segments).
"""
batch_shape = torch.as_tensor(
batch_shape, dtype=torch.long
) # create a rank 1 tensor vector containing batch_shape (e.g. [2])
assert len(batch_shape.size()) == 1
num_segments = torch.as_tensor(num_segments) # create a rank 0 tensor (scalar) containing num_segments (e.g. 64)
assert len(num_segments.size()) == 0
indices = torch.arange(
start=0, end=num_segments, device=num_segments.device
) # create a rank 1 vector with num_segments elements
new_tensor = torch.cat(
[torch.ones_like(batch_shape, dtype=torch.long, device=num_segments.device), num_segments.unsqueeze(dim=0)],
dim=0,
)
# new_tensor is just a vector of [1 64] for example (assuming only 1 batch dimension)
new_shape = [int(x) for x in new_tensor.tolist()]
indices = indices.view(new_shape)
multiples = torch.cat([batch_shape, torch.as_tensor([1])], dim=0)
indices = indices.repeat(multiples.tolist())
# equivalent (in Numpy:)
# indices = torch.as_tensor(np.tile(indices.numpy(), multiples.tolist()))
return IndexMap(indices=indices, num_segments=num_segments, batch_dims=list(batch_shape.size())[0])
def _segment_reduce(values, index, segment_reduce_fn, name):
"""
Applies a segment reduction segment-wise.
Args:
values (:obj:`torch.Tensor`):
Tensor with segment values.
index (:obj:`IndexMap`):
IndexMap.
segment_reduce_fn (:obj:`str`):
Name for the reduce operation. One of "sum", "mean", "max" or "min".
name (:obj:`str`):
Name for the operation. Currently not used
Returns:
(:obj:`IndexMap`): IndexMap of shape batch_shape with elements equal to range(num_segments).
"""
# Flatten the batch dimensions, as segments ops (scatter) do not support batching.
# However if `values` has extra dimensions to the right keep them
# unflattened. Segmented ops support vector-valued operations.
flat_index = flatten(index)
vector_shape = values.size()[len(index.indices.size()) :] # torch.Size object
flattened_shape = torch.cat(
[torch.as_tensor([-1], dtype=torch.long), torch.as_tensor(vector_shape, dtype=torch.long)], dim=0
)
# changed "view" by "reshape" in the following line
flat_values = values.reshape(flattened_shape.tolist())
segment_means = scatter(
src=flat_values,
index=flat_index.indices.long(),
dim=0,
dim_size=int(flat_index.num_segments),
reduce=segment_reduce_fn,
)
# Unflatten the values.
new_shape = torch.cat(
[
torch.as_tensor(index.batch_shape(), dtype=torch.long),
torch.as_tensor([index.num_segments], dtype=torch.long),
torch.as_tensor(vector_shape, dtype=torch.long),
],
dim=0,
)
output_values = segment_means.view(new_shape.tolist())
output_index = range_index_map(index.batch_shape(), index.num_segments)
return output_values, output_index
def reduce_sum(values, index, name="segmented_reduce_sum"):
"""
Sums a tensor over its segments.
Outputs 0 for empty segments.
This operations computes the sum over segments, with support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present, the output will be a sum of
vectors rather than scalars. Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values (:obj:`torch.Tensor` of shape [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..]):
Tensor containing the values of which the sum must be taken segment-wise.
index (:obj:`IndexMap`, indices are of shape [B1, B2, ..., Bn, I1, .., Ik].):
Index defining the segments.
name (:obj:`str`, `optional`, defaults to 'segmented_reduce_sum'):
Name for the operation. Currently not used
Returns:
output_values (:obj:`torch.Tensor`of shape [B1, B2, ..., Bn, num_segments, V1, V2, ..]): Tensor containing the
output values. output_index (:obj:`IndexMap`): IndexMap with shape [B1, B2, ..., Bn, num_segments]. .
"""
return _segment_reduce(values, index, "sum", name)
def reduce_mean(values, index, name="segmented_reduce_mean"):
"""
Averages a tensor over its segments.
Outputs 0 for empty segments.
This operations computes the mean over segments, with support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present, the output will be a mean of
vectors rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values (:obj:`torch.Tensor` of shape [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..]):
Tensor containing the values of which the mean must be taken segment-wise.
index (:obj:`IndexMap`, indices are of shape [B1, B2, ..., Bn, I1, .., Ik].):
Index defining the segments.
name (:obj:`str`, `optional`, defaults to 'segmented_reduce_sum'):
Name for the operation. Currently not used
Returns:
output_values (:obj:`torch.Tensor`of shape [B1, B2, ..., Bn, num_segments, V1, V2, ..]): Tensor containing the
output values. output_index (:obj:`IndexMap`): IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, "mean", name)
def reduce_max(values, index, name="segmented_reduce_max"):
"""
Computes the maximum over segments.
This operation computes the maximum over segments, with support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present, the output will be an element-wise
maximum of vectors rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values (:obj:`torch.Tensor` of shape [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..]):
Tensor containing the values of which the max must be taken segment-wise.
index (:obj:`IndexMap`, indices are of shape [B1, B2, ..., Bn, I1, .., Ik].):
Index defining the segments.
name (:obj:`str`, `optional`, defaults to 'segmented_reduce_sum'):
Name for the operation. Currently not used
Returns:
output_values (:obj:`torch.Tensor`of shape [B1, B2, ..., Bn, num_segments, V1, V2, ..]): Tensor containing the
output values. output_index (:obj:`IndexMap`): IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, "max", name)
def reduce_min(values, index, name="segmented_reduce_min"):
"""
Computes the minimum over segments.
This operations computes the minimum over segments, with support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present, the output will be an element-wise
minimum of vectors rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values (:obj:`torch.Tensor` of shape [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..]):
Tensor containing the values of which the min must be taken segment-wise.
index (:obj:`IndexMap`, indices are of shape [B1, B2, ..., Bn, I1, .., Ik].):
Index defining the segments.
name (:obj:`str`, `optional`, defaults to 'segmented_reduce_sum'):
Name for the operation. Currently not used
Returns:
output_values (:obj:`torch.Tensor`of shape [B1, B2, ..., Bn, num_segments, V1, V2, ..]): Tensor containing the
output values. output_index (:obj:`IndexMap`): IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, "min", name)
# End of everything related to segmented tensors
def compute_column_logits(
sequence_output, column_output_weights, column_output_bias, cell_index, cell_mask, allow_empty_column_selection
):
"""
Computes the column logits.
Args:
sequence_output (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Also known as last_hidden_state. Sequence of hidden-states at the output of the last layer of the model.
column_output_weights (:obj:`torch.FloatTensor` of shape :obj:`(hidden_size)`):
Weights of the linear layer for column selection.
column_output_bias (:obj:`torch.FloatTensor` of shape :obj:`()`):
Bias of the linear layer for column selection.
cell_index (:obj:`ProductIndexMap`):
Index that groups tokens into cells.
cell_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, max_num_rows * max_num_cols)`):
Mask for cells that exist in the table (i.e. that are not padding).
allow_empty_column_selection (:obj:`bool`):
Whether to allow not to select any column
Returns:
column_logits (:obj:`torch.FloatTensor`of shape :obj:`(batch_size, max_num_cols)`): Tensor containing the
column logits for every example in the batch.
"""
# First, compute the token logits (batch_size, seq_len) - without temperature
token_logits = torch.einsum("bsj,j->bs", sequence_output, column_output_weights) + column_output_bias
# Next, average the logits per cell (batch_size, max_num_cols*max_num_rows)
cell_logits, cell_logits_index = reduce_mean(token_logits, cell_index)
# Finally, average the logits per column (batch_size, max_num_cols)
column_index = cell_index.project_inner(cell_logits_index)
column_logits, out_index = reduce_sum(cell_logits * cell_mask, column_index)
cell_count, _ = reduce_sum(cell_mask, column_index)
column_logits /= cell_count + EPSILON_ZERO_DIVISION
# Mask columns that do not appear in the example.
is_padding = torch.logical_and(cell_count < 0.5, ~torch.eq(out_index.indices, 0))
column_logits += CLOSE_ENOUGH_TO_LOG_ZERO * torch.as_tensor(
is_padding, dtype=torch.float32, device=is_padding.device
)
if not allow_empty_column_selection:
column_logits += CLOSE_ENOUGH_TO_LOG_ZERO * torch.as_tensor(
torch.eq(out_index.indices, 0), dtype=torch.float32, device=out_index.indices.device
)
return column_logits
def _single_column_cell_selection_loss(token_logits, column_logits, labels, cell_index, col_index, cell_mask):
"""
Computes the loss for cell selection constrained to a single column. The loss is a hierarchical log-likelihood. The
model first predicts a column and then selects cells within that column (conditioned on the column). Cells outside
the selected column are never selected.
Args:
token_logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`):
Tensor containing the logits per token.
column_logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, max_num_cols)`):
Tensor containing the logits per column.
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`):
Labels per token.
cell_index (:obj:`ProductIndexMap`):
Index that groups tokens into cells.
col_index (:obj:`IndexMap`):
Index that groups tokens into columns.
cell_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, max_num_rows * max_num_cols)`):
Mask for cells that exist in the table (i.e. that are not padding).
Returns:
selection_loss_per_example (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): Loss for each example.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`): New logits which are only
allowed to select cells in a single column. Logits outside of the most likely column according to
`column_logits` will be set to a very low value (such that the probabilities are 0).
"""
# Part 1: column loss
# First find the column we should select. We use the column with maximum number of selected cells.
labels_per_column, _ = reduce_sum(torch.as_tensor(labels, dtype=torch.float32, device=labels.device), col_index)
# shape of labels_per_column is (batch_size, max_num_cols). It contains the number of label ids for every column, for every example
column_label = torch.argmax(labels_per_column, dim=-1) # shape (batch_size,)
# Check if there are no selected cells in the column. In that case the model
# should predict the special column id 0, which means "select nothing".
no_cell_selected = torch.eq(
torch.max(labels_per_column, dim=-1)[0], 0
) # no_cell_selected is of shape (batch_size,) and equals True
# if an example of the batch has no cells selected (i.e. if there are no labels set to 1 for that example)
column_label = torch.where(
no_cell_selected.view(column_label.size()), torch.zeros_like(column_label), column_label
)
column_dist = torch.distributions.Categorical(logits=column_logits) # shape (batch_size, max_num_cols)
column_loss_per_example = -column_dist.log_prob(column_label)
# Part 2: cell loss
# Reduce the labels and logits to per-cell from per-token.
# logits_per_cell: shape (batch_size, max_num_rows*max_num_cols) i.e. (batch_size, 64*32)
logits_per_cell, _ = reduce_mean(token_logits, cell_index)
# labels_per_cell: shape (batch_size, 64*32), indicating whether each cell should be selected (1) or not (0)
labels_per_cell, labels_index = reduce_max(
torch.as_tensor(labels, dtype=torch.long, device=labels.device), cell_index
)
# Mask for the selected column.
# column_id_for_cells: shape (batch_size, 64*32), indicating to which column each cell belongs
column_id_for_cells = cell_index.project_inner(labels_index).indices
# column_mask: shape (batch_size, 64*32), equal to 1 if cell belongs to column to be selected
column_mask = torch.as_tensor(
torch.eq(column_id_for_cells, torch.unsqueeze(column_label, dim=-1)),
dtype=torch.float32,
device=cell_mask.device,
)
# Compute the log-likelihood for cells, but only for the selected column.
cell_dist = torch.distributions.Bernoulli(logits=logits_per_cell) # shape (batch_size, 64*32)
cell_log_prob = cell_dist.log_prob(labels_per_cell.type(torch.float32)) # shape(batch_size, 64*32)
cell_loss = -torch.sum(cell_log_prob * column_mask * cell_mask, dim=1)
# We need to normalize the loss by the number of cells in the column.
cell_loss /= torch.sum(column_mask * cell_mask, dim=1) + EPSILON_ZERO_DIVISION
selection_loss_per_example = column_loss_per_example
selection_loss_per_example += torch.where(
no_cell_selected.view(selection_loss_per_example.size()),
torch.zeros_like(selection_loss_per_example),
cell_loss,
)
# Set the probs outside the selected column (selected by the *model*)
# to 0. This ensures backwards compatibility with models that select
# cells from multiple columns.
selected_column_id = torch.as_tensor(
torch.argmax(column_logits, dim=-1), dtype=torch.long, device=column_logits.device
) # shape (batch_size,)
# selected_column_mask: shape (batch_size, 64*32), equal to 1 if cell belongs to column selected by the model
selected_column_mask = torch.as_tensor(
torch.eq(column_id_for_cells, torch.unsqueeze(selected_column_id, dim=-1)),
dtype=torch.float32,
device=selected_column_id.device,
)
# Never select cells with the special column id 0.
selected_column_mask = torch.where(
torch.eq(column_id_for_cells, 0).view(selected_column_mask.size()),
torch.zeros_like(selected_column_mask),
selected_column_mask,
)
new_logits_per_cell = logits_per_cell + CLOSE_ENOUGH_TO_LOG_ZERO * (1.0 - cell_mask * selected_column_mask)
logits = gather(new_logits_per_cell, cell_index)
return selection_loss_per_example, logits
def compute_token_logits(sequence_output, temperature, output_weights, output_bias):
"""
Computes logits per token
Args:
sequence_output (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Also known as last_hidden_state. Sequence of hidden-states at the output of the last layer of the model.
temperature (:obj:`float`):
Temperature for the Bernoulli distribution.
output_weights (:obj:`torch.FloatTensor` of shape :obj:`(hidden_size,)`):
Weights of the linear layer for cell selection.
output_bias (:obj:`torch.FloatTensor` of shape :obj:`()`):
Bias of the linear layer for cell selection
Returns:
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`): Logits per token.
"""
logits = (torch.einsum("bsj,j->bs", sequence_output, output_weights) + output_bias) / temperature
return logits
def _calculate_aggregate_mask(answer, pooled_output, cell_selection_preference, labels, aggregation_classifier):
"""
Finds examples where the model should select cells with no aggregation.
Returns a mask that determines for which examples should the model select answers directly from the table, without
any aggregation function. If the answer is a piece of text the case is unambiguous as aggregation functions only
apply to numbers. If the answer is a number but does not appear in the table then we must use some aggregation
case. The ambiguous case is when the answer is a number that also appears in the table. In this case we use the
aggregation function probabilities predicted by the model to decide whether to select or aggregate. The threshold
for this is a hyperparameter `cell_selection_preference`
Args:
answer (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, )`):
Answer for every example in the batch. Nan if there is no scalar answer.
pooled_output (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, hidden_size)`):
Output of the pooler (BertPooler) on top of the encoder layer.
cell_selection_preference (:obj:`float`):
Preference for cell selection in ambiguous cases.
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`):
Labels per token. aggregation_classifier (:obj:`torch.nn.Linear`): Aggregation head
Returns:
aggregate_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): A mask set to 1 for examples that
should use aggregation functions.
"""
# torch.FloatTensor(batch_size,)
aggregate_mask_init = torch.logical_not(torch.isnan(answer)).type(torch.FloatTensor).to(answer.device)
logits_aggregation = aggregation_classifier(pooled_output)
dist_aggregation = torch.distributions.categorical.Categorical(logits=logits_aggregation)
# Index 0 corresponds to "no aggregation".
aggregation_ops_total_mass = torch.sum(dist_aggregation.probs[:, 1:], dim=1)
# Cell selection examples according to current model.
is_pred_cell_selection = aggregation_ops_total_mass <= cell_selection_preference
# Examples with non-empty cell selection supervision.
is_cell_supervision_available = torch.sum(labels, dim=1) > 0
# torch.where is not equivalent to tf.where (in tensorflow 1)
# hence the added .view on the condition to match the shape of the first tensor
aggregate_mask = torch.where(
torch.logical_and(is_pred_cell_selection, is_cell_supervision_available).view(aggregate_mask_init.size()),
torch.zeros_like(aggregate_mask_init, dtype=torch.float32),
aggregate_mask_init,
)
aggregate_mask = aggregate_mask.detach()
return aggregate_mask
def _calculate_aggregation_loss_known(
logits_aggregation, aggregate_mask, aggregation_labels, use_answer_as_supervision, num_aggregation_labels
):
"""
Calculates aggregation loss when its type is known during training.
In the weakly supervised setting, the only known information is that for cell selection examples, "no aggregation"
should be predicted. For other examples (those that require aggregation), no loss is accumulated. In the setting
where aggregation type is always known, standard cross entropy loss is accumulated for all examples
Args:
logits_aggregation (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
aggregate_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, )`):
A mask set to 1 for examples that should use aggregation functions.
aggregation_labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, )`):
Aggregation function id for every example in the batch.
use_answer_as_supervision (:obj:`bool`, `optional`):
Whether to use the answer as the only supervision for aggregation examples.
num_aggregation_labels (:obj:`int`, `optional`, defaults to 0):
The number of aggregation operators to predict.
Returns:
aggregation_loss_known (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): Aggregation loss (when its
type is known during training) per example.
"""
if use_answer_as_supervision:
# Prepare "no aggregation" targets for cell selection examples.
target_aggregation = torch.zeros_like(aggregate_mask, dtype=torch.long)
else:
# Use aggregation supervision as the target.
target_aggregation = aggregation_labels
one_hot_labels = nn.functional.one_hot(target_aggregation, num_classes=num_aggregation_labels).type(torch.float32)
log_probs = nn.functional.log_softmax(logits_aggregation, dim=-1)
# torch.FloatTensor[batch_size]
per_example_aggregation_intermediate = -torch.sum(one_hot_labels * log_probs, dim=-1)
if use_answer_as_supervision:
# Accumulate loss only for examples requiring cell selection
# (no aggregation).
return per_example_aggregation_intermediate * (1 - aggregate_mask)
else:
return per_example_aggregation_intermediate
def _calculate_aggregation_loss_unknown(logits_aggregation, aggregate_mask):
"""
Calculates aggregation loss in the case of answer supervision.
Args:
logits_aggregation (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
aggregate_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, )`):
A mask set to 1 for examples that should use aggregation functions
Returns:
aggregation_loss_unknown (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): Aggregation loss (in case of
answer supervision) per example.
"""
dist_aggregation = torch.distributions.categorical.Categorical(logits=logits_aggregation)
# Index 0 corresponds to "no aggregation".
aggregation_ops_total_mass = torch.sum(dist_aggregation.probs[:, 1:], dim=1)
# Predict some aggregation in case of an answer that needs aggregation.
# This increases the probability of all aggregation functions, in a way
# similar to MML, but without considering whether the function gives the
# correct answer.
return -torch.log(aggregation_ops_total_mass) * aggregate_mask
def _calculate_aggregation_loss(
logits_aggregation,
aggregate_mask,
aggregation_labels,
use_answer_as_supervision,
num_aggregation_labels,
aggregation_loss_weight,
):
"""
Calculates the aggregation loss per example.
Args:
logits_aggregation (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
aggregate_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, )`):
A mask set to 1 for examples that should use aggregation functions.
aggregation_labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, )`):
Aggregation function id for every example in the batch.
use_answer_as_supervision (:obj:`bool`, `optional`):
Whether to use the answer as the only supervision for aggregation examples.
num_aggregation_labels (:obj:`int`, `optional`, defaults to 0):
The number of aggregation operators to predict.
aggregation_loss_weight (:obj:`float`, `optional`, defaults to 1.0):
Importance weight for the aggregation loss.
Returns:
aggregation_loss (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): Aggregation loss per example.
"""
per_example_aggregation_loss = _calculate_aggregation_loss_known(
logits_aggregation, aggregate_mask, aggregation_labels, use_answer_as_supervision, num_aggregation_labels
)
if use_answer_as_supervision:
# Add aggregation loss for numeric answers that need aggregation.
per_example_aggregation_loss += _calculate_aggregation_loss_unknown(logits_aggregation, aggregate_mask)
return aggregation_loss_weight * per_example_aggregation_loss
def _calculate_expected_result(
dist_per_cell, numeric_values, numeric_values_scale, input_mask_float, logits_aggregation, config
):
"""
Calculates the expected result given cell and aggregation probabilities.
Args:
dist_per_cell (:obj:`torch.distributions.Bernoulli`):
Cell selection distribution for each cell.
numeric_values (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`):
Numeric values of every token. Nan for tokens which are not numeric values.
numeric_values_scale (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`):
Scale of the numeric values of every token.
input_mask_float (:obj: `torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`):
Mask for the table, without question tokens and table headers.
logits_aggregation (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
config (:class:`~transformers.TapasConfig`):
Model configuration class with all the hyperparameters of the model
Returns:
expected_result (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): The expected result per example.
"""
if config.use_gumbel_for_cells:
gumbel_dist = torch.distributions.RelaxedBernoulli(
# The token logits where already divided by the temperature and used for
# computing cell selection errors so we need to multiply it again here
temperature=config.temperature,
logits=dist_per_cell.logits * config.temperature,
)
scaled_probability_per_cell = gumbel_dist.sample()
else:
scaled_probability_per_cell = dist_per_cell.probs
# <float32>[batch_size, seq_length]
scaled_probability_per_cell = (scaled_probability_per_cell / numeric_values_scale) * input_mask_float
count_result = torch.sum(scaled_probability_per_cell, dim=1)
numeric_values_masked = torch.where(
torch.isnan(numeric_values), torch.zeros_like(numeric_values), numeric_values
) # Mask non-numeric table values to zero.
sum_result = torch.sum(scaled_probability_per_cell * numeric_values_masked, dim=1)
avg_approximation = config.average_approximation_function
if avg_approximation == AverageApproximationFunction.RATIO:
average_result = sum_result / (count_result + EPSILON_ZERO_DIVISION)
elif avg_approximation == AverageApproximationFunction.FIRST_ORDER:
# The sum of all probabilities except that correspond to other cells
# Ex here stands for expectation, more explicitly the expectation of the sum of N-1 Bernoulli random variables plus
# the constant 1, which is computed as adding all N expected values and subtracting the extra one. It corresponds to X_c
# in Appendix D of the original TAPAS paper which is trying to approximate the average of a random set.
ex = torch.sum(scaled_probability_per_cell, dim=1, keepdim=True) - scaled_probability_per_cell + 1
average_result = torch.sum(numeric_values_masked * scaled_probability_per_cell / ex, dim=1)
elif avg_approximation == AverageApproximationFunction.SECOND_ORDER:
# The sum of all probabilities except that correspond to other cells
ex = torch.sum(scaled_probability_per_cell, dim=1, keepdim=True) - scaled_probability_per_cell + 1
pointwise_var = scaled_probability_per_cell * (1 - scaled_probability_per_cell)
var = torch.sum(pointwise_var, dim=1, keepdim=True) - pointwise_var
multiplier = (var / torch.square(ex) + 1) / ex
average_result = torch.sum(numeric_values_masked * scaled_probability_per_cell * multiplier, dim=1)
else:
raise ValueError(f"Invalid average_approximation_function: {config.average_approximation_function}")
if config.use_gumbel_for_aggregation:
gumbel_dist = torch.distributions.RelaxedOneHotCategorical(
config.aggregation_temperature, logits=logits_aggregation[:, 1:]
)
# <float32>[batch_size, num_aggregation_labels - 1]
aggregation_op_only_probs = gumbel_dist.sample()
else:
# <float32>[batch_size, num_aggregation_labels - 1]
aggregation_op_only_probs = nn.functional.softmax(
logits_aggregation[:, 1:] / config.aggregation_temperature, dim=-1
)
all_results = torch.cat(
[
torch.unsqueeze(sum_result, dim=1),
torch.unsqueeze(average_result, dim=1),
torch.unsqueeze(count_result, dim=1),
],
dim=1,
)
expected_result = torch.sum(all_results * aggregation_op_only_probs, dim=1)
return expected_result
# PyTorch does not currently support Huber loss with custom delta so we define it ourself
def huber_loss(input, target, delta: float = 1.0):
errors = torch.abs(input - target) # shape (batch_size,)
return torch.where(errors < delta, 0.5 * errors ** 2, errors * delta - (0.5 * delta ** 2))
def _calculate_regression_loss(
answer,
aggregate_mask,
dist_per_cell,
numeric_values,
numeric_values_scale,
input_mask_float,
logits_aggregation,
config,
):
"""
Calculates the regression loss per example.
Args:
answer (:obj: `torch.FloatTensor` of shape :obj:`(batch_size,)`):
Answer for every example in the batch. Nan if there is no scalar answer.
aggregate_mask (:obj: `torch.FloatTensor` of shape :obj:`(batch_size,)`):
A mask set to 1 for examples that should use aggregation functions.
dist_per_cell (:obj:`torch.distributions.Bernoulli`):
Cell selection distribution for each cell.
numeric_values (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`):
Numeric values of every token. Nan for tokens which are not numeric values.
numeric_values_scale (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`):
Scale of the numeric values of every token.
input_mask_float (:obj: `torch.FloatTensor` of shape :obj:`(batch_size, seq_length)`):
Mask for the table, without question tokens and table headers.
logits_aggregation (:obj: `torch.FloatTensor` of shape :obj:`(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
config (:class:`~transformers.TapasConfig`):
Model configuration class with all the parameters of the model
Returns:
per_example_answer_loss_scaled (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): Scales answer loss for
each example in the batch. large_answer_loss_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size,)`): A
mask which is 1 for examples for which their answer loss is larger than the answer_loss_cutoff.
"""
# float32 (batch_size,)
expected_result = _calculate_expected_result(
dist_per_cell, numeric_values, numeric_values_scale, input_mask_float, logits_aggregation, config
)
# float32 (batch_size,)
answer_masked = torch.where(torch.isnan(answer), torch.zeros_like(answer), answer)
if config.use_normalized_answer_loss:
normalizer = (torch.max(torch.abs(expected_result), torch.abs(answer_masked)) + EPSILON_ZERO_DIVISION).detach()
normalized_answer_masked = answer_masked / normalizer
normalized_expected_result = expected_result / normalizer
per_example_answer_loss = huber_loss(
normalized_expected_result * aggregate_mask, normalized_answer_masked * aggregate_mask
)
else:
per_example_answer_loss = huber_loss(
expected_result * aggregate_mask, answer_masked * aggregate_mask, delta=config.huber_loss_delta
)
if config.answer_loss_cutoff is None:
large_answer_loss_mask = torch.ones_like(per_example_answer_loss, dtype=torch.float32)
else:
large_answer_loss_mask = torch.where(
per_example_answer_loss > config.answer_loss_cutoff,
torch.zeros_like(per_example_answer_loss, dtype=torch.float32),
torch.ones_like(per_example_answer_loss, dtype=torch.float32),
)
per_example_answer_loss_scaled = config.answer_loss_importance * (per_example_answer_loss * aggregate_mask)
return per_example_answer_loss_scaled, large_answer_loss_mask