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https://api.github.com/repos/huggingface/datasets/issues/471 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/471/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/471/comments | https://api.github.com/repos/huggingface/datasets/issues/471/events | https://github.com/huggingface/datasets/pull/471 | 671,996,423 | MDExOlB1bGxSZXF1ZXN0NDYyMTExNTU1 | 471 | add reuters21578 dataset | {
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https://api.github.com/repos/huggingface/datasets/issues/470 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/470/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/470/comments | https://api.github.com/repos/huggingface/datasets/issues/470/events | https://github.com/huggingface/datasets/pull/470 | 671,952,276 | MDExOlB1bGxSZXF1ZXN0NDYyMDc0MzQ0 | 470 | Adding IWSLT 2017 dataset. | {
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"Ok I tried to add the dummy dataset (I actually modified the dummy_data command to generate them for me because it was too painful to do that manually).\r\n\r\nThe dummy_data test seems to work:\r\n```bash\r\nRUN_SLOW=1 pytest tests/test_dataset_common.py::LocalDatasetTest::test_load_dataset_all_configs_iwslt2017\r\n```\r\n\r\nHowever the test on the full data fails, because the `**config_kwargs` don't include `pair, multilingual`.\r\nI could add a default parameter for the Config (but that feels broken, how can one config be the \"default\" ?). If I do I still have errors, saying that something within the downloader is a directory so I'm not sure where that comes from.\r\n\r\nI can share my auto_zip dummy data code if you want (I tried to keep it clean). [Edit: it's [here](https://github.com/Narsil/nlp/tree/auto_zip)]. \r\nThe way it works is that it just keeps X line from the beginning of the original files, and Y lines at the end. It's good enough for my usage, but I guess it could work for most data files out there (as long as they're real text and not binary format)",
"The slow test doesn't support dataset that require config parameters that don't have default values.\r\n\r\nTo improve that we can replace it by two tests:\r\n- one test that loads the default config (it can simply be the first config of the config lists for example)\r\n- one tests that iterate over all configs and load them all one by one\r\n\r\nBy using the configs inside the builder config lists, there is no need to instantiate new configs, so the missing parameter error doesn't happen.\r\n\r\nDoes that sound good to you ?",
"Seems fair.\r\nHowever I'm unsure what I should do ?\r\n\r\nShould I wait for #527 to pass and rebase and the command will be the same ?\r\nShould I update something ?",
"I think everything is fine on your side. Thanks for adding this dataset :)\r\n\r\nI think it's better to wait for the slow test to be updated if you don't mind.\r\n",
"Sure ! :)",
"Thanks for fixing the isort/black changes :)\r\nFeel free to merge if it's good for you @Narsil "
] | 1,596,448,359,000 | 1,599,482,010,000 | 1,599,482,010,000 | CONTRIBUTOR | null | false | {
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} | Created a [IWSLT 2017](https://sites.google.com/site/iwsltevaluation2017/TED-tasks) dataset script for the *multilingual data*.
```
Bilingual data: {Arabic, German, French, Japanese, Korean, Chinese} <-> English
Multilingual data: German, English, Italian, Dutch, Romanian. (Any pair)
```
I'm unsure how to handle bilingual vs multilingual. Given `nlp` architecture a Config option seems to be the way to go, however, it might be a bit confusing to have different language pairs with different option. Using just language pairs is not viable as English to German exists in both.
Any opinion on how that should be done ?
EDIT: I decided to just omit de-en from multilingual as it's only a subset of the bilingual one. That way only language pairs exist.
EDIT : Could be interesting for #438 | {
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https://api.github.com/repos/huggingface/datasets/issues/469 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/469/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/469/comments | https://api.github.com/repos/huggingface/datasets/issues/469/events | https://github.com/huggingface/datasets/issues/469 | 671,876,963 | MDU6SXNzdWU2NzE4NzY5NjM= | 469 | invalid data type 'str' at _convert_outputs in arrow_dataset.py | {
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"Hi ! Did you try to set the output format to pytorch ? (or tensorflow if you're using tensorflow)\r\nIt can be done with `dataset.set_format(\"torch\", columns=columns)` (or \"tensorflow\").\r\n\r\nNote that for pytorch, string columns can't be converted to `torch.Tensor`, so you have to specify in `columns=` the list of columns you want to keep (`input_ids` for example)",
"Hello . Yes, I did set the output format as below for the two columns \r\n\r\n `train_dataset.set_format('torch',columns=['Text','Label'])`\r\n ",
"I think you're having this issue because you try to format strings as pytorch tensors, which is not possible.\r\nIndeed by having \"Text\" in `columns=['Text','Label']`, you try to convert the text values to pytorch tensors.\r\n\r\nInstead I recommend you to first tokenize your dataset using a tokenizer from transformers. For example\r\n\r\n```python\r\nfrom transformers import BertTokenizer\r\ntokenizer = BertTokenizer.from_pretrained(\"bert-base-uncased\")\r\n\r\ntrain_dataset.map(lambda x: tokenizer(x[\"Text\"]), batched=True)\r\ntrain_dataset.set_format(\"torch\", column=[\"input_ids\"])\r\n```\r\n\r\nAnother way to fix your issue would be to not set the format to pytorch, and leave the dataset as it is by default. In that case, the strings are returned normally when you get examples from your dataloader. It means that you would have to tokenize the examples in the training loop (or using a data collator) though.\r\n\r\nLet me know if you have other questions",
"Hi, actually the thing is I am getting the same error and even after tokenizing them I am passing them through batch_encode_plus.\r\nI dont know what seems to be the problem is. I even converted it into 'pt' while passing them through batch_encode_plus but when I am evaluating my model , i am getting this error\r\n\r\n\r\n---------------------------------------------------------------------------\r\nTypeError Traceback (most recent call last)\r\n<ipython-input-145-ca218223c9fc> in <module>()\r\n----> 1 val_loss, predictions, true_val = evaluate(dataloader_validation)\r\n 2 val_f1 = f1_score_func(predictions, true_val)\r\n 3 tqdm.write(f'Validation loss: {val_loss}')\r\n 4 tqdm.write(f'F1 Score (Weighted): {val_f1}')\r\n\r\n6 frames\r\n/usr/local/lib/python3.6/dist-packages/torch/utils/data/dataset.py in <genexpr>(.0)\r\n 160 \r\n 161 def __getitem__(self, index):\r\n--> 162 return tuple(tensor[index] for tensor in self.tensors)\r\n 163 \r\n 164 def __len__(self):\r\n\r\nTypeError: new(): invalid data type 'str' ",
"> Hi, actually the thing is I am getting the same error and even after tokenizing them I am passing them through batch_encode_plus.\r\n> I dont know what seems to be the problem is. I even converted it into 'pt' while passing them through batch_encode_plus but when I am evaluating my model , i am getting this error\r\n> \r\n> TypeError Traceback (most recent call last)\r\n> in ()\r\n> ----> 1 val_loss, predictions, true_val = evaluate(dataloader_validation)\r\n> 2 val_f1 = f1_score_func(predictions, true_val)\r\n> 3 tqdm.write(f'Validation loss: {val_loss}')\r\n> 4 tqdm.write(f'F1 Score (Weighted): {val_f1}')\r\n> \r\n> 6 frames\r\n> /usr/local/lib/python3.6/dist-packages/torch/utils/data/dataset.py in (.0)\r\n> 160\r\n> 161 def **getitem**(self, index):\r\n> --> 162 return tuple(tensor[index] for tensor in self.tensors)\r\n> 163\r\n> 164 def **len**(self):\r\n> \r\n> TypeError: new(): invalid data type 'str'\r\n\r\nI got the same error and fix it .\r\nyou can check your input where there may be string contained.\r\nsuch as\r\n```\r\na = [1,2,3,4,'<unk>']\r\ntorch.tensor(a)\r\n```",
"I didn't know tokenizers could return strings in the token ids. Which tokenizer are you using to get this @Doragd ?",
"> I didn't know tokenizers could return strings in the token ids. Which tokenizer are you using to get this @Doragd ?\r\n\r\ni'm sorry that i met this issue in another place (not in huggingface repo). ",
"@akhilkapil do you have strings in your dataset ? When you set the dataset format to \"pytorch\" you should exclude columns with strings as pytorch can't make tensors out of strings"
] | 1,596,440,909,000 | 1,603,357,466,000 | null | NONE | null | null | null | I trying to build multi label text classifier model using Transformers lib.
I'm using Transformers NLP to load the data set, while calling trainer.train() method. It throws the following error
File "C:\***\arrow_dataset.py", line 343, in _convert_outputs
v = command(v)
TypeError: new(): invalid data type 'str'
I'm using pyarrow 1.0.0. And I have simple custom data set with Text and Integer Label.
Ex: Data
Text , Label #Column Header
I'm facing an Network issue, 1
I forgot my password, 2
Error StackTrace:
File "C:\**\transformers\trainer.py", line 492, in train
for step, inputs in enumerate(epoch_iterator):
File "C:\**\tqdm\std.py", line 1104, in __iter__
for obj in iterable:
File "C:\**\torch\utils\data\dataloader.py", line 345, in __next__
data = self._next_data()
File "C:\**\torch\utils\data\dataloader.py", line 385, in _next_data
data = self._dataset_fetcher.fetch(index) # may raise StopIteration
File "C:\**\torch\utils\data\_utils\fetch.py", line 44, in fetch
data = [self.dataset[idx] for idx in possibly_batched_index]
File "C:\**\torch\utils\data\_utils\fetch.py", line 44, in <listcomp>
data = [self.dataset[idx] for idx in possibly_batched_index]
File "C:\**\nlp\arrow_dataset.py", line 414, in __getitem__
output_all_columns=self._output_all_columns,
File "C:\**\nlp\arrow_dataset.py", line 403, in _getitem
outputs, format_type=format_type, format_columns=format_columns, output_all_columns=output_all_columns
File "C:\**\nlp\arrow_dataset.py", line 343, in _convert_outputs
v = command(v)
TypeError: new(): invalid data type 'str'
| {
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https://api.github.com/repos/huggingface/datasets/issues/468 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/468/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/468/comments | https://api.github.com/repos/huggingface/datasets/issues/468/events | https://github.com/huggingface/datasets/issues/468 | 671,622,441 | MDU6SXNzdWU2NzE2MjI0NDE= | 468 | UnicodeDecodeError while loading PAN-X task of XTREME dataset | {
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"Indeed. Solution 1 is the simplest.\r\n\r\nThis is actually a recurring problem.\r\nI think we should scan all the datasets with regexpr to fix the use of `open()` without encodings.\r\nAnd probably add a test in the CI to forbid using this in the future.",
"I'm happy to tackle the broader problem - will open a PR when it's ready!",
"That would be awesome!",
"I've created a simple function that seems to do the trick:\r\n\r\n```python\r\ndef apply_encoding_on_file_open(filepath: str):\r\n \"\"\"Apply UTF-8 encoding for all instances where a non-binary file is opened.\"\"\"\r\n \r\n with open(filepath, 'r', encoding='utf-8') as input_file:\r\n regexp = re.compile(r\"\"\"\r\n (?!.*\\b(?:encoding|rb|wb|wb+|ab|ab+)\\b)\r\n (open)\r\n \\((.*)\\)\r\n \"\"\")\r\n input_text = input_file.read()\r\n match = regexp.search(input_text)\r\n \r\n if match:\r\n print('Found match!', match.group())\r\n # append utf-8 encoding to matching groups in-place\r\n output = regexp.sub(lambda m: m.group()[:-1]+', encoding=\"utf-8\")', input_text)\r\n with open(filepath, 'w', encoding='utf-8') as output_file:\r\n output_file.write(output)\r\n else:\r\n print(\"No match found!\")\r\n```\r\n\r\nThe regexp does a negative lookahead to avoid matching on cases where the encoding is already specified or when binary files are involved.\r\n\r\nFrom an implementation perspective:\r\n\r\n* Would it make sense to include this function in `nlp-cli` so that we can run something like\r\n```\r\nnlp-cli fix_encoding path/to/folder\r\n```\r\nand the command recursively fixes all files in the target?\r\n* What is the desired behaviour in the CI test? Here we could either have a simple script that we run as a `job` in the CI and raises an error if a missing encoding is detected. Alternatively we could incorporate this behaviour into the CLI and run that in the CI.\r\n\r\nPlease let me know what you prefer among the alternatives.\r\n",
"I realised I was overthinking the problem, so decided to just run the regexp over the codebase and make the PR. In other words, we can ignore my comments about using the CLI 😸 "
] | 1,596,377,110,000 | 1,597,911,368,000 | 1,597,911,368,000 | MEMBER | null | null | null | Hi 🤗 team!
## Description of the problem
I'm running into a `UnicodeDecodeError` while trying to load the PAN-X subset the XTREME dataset:
```
---------------------------------------------------------------------------
UnicodeDecodeError Traceback (most recent call last)
<ipython-input-5-1d61f439b843> in <module>
----> 1 dataset = load_dataset("xtreme", "PAN-X.en", data_dir='./data')
/usr/local/lib/python3.6/dist-packages/nlp/load.py in load_dataset(path, name, version, data_dir, data_files, split, cache_dir, features, download_config, download_mode, ignore_verifications, save_infos, **config_kwargs)
528 ignore_verifications = ignore_verifications or save_infos
529 # Download/copy dataset processing script
--> 530 module_path, hash = prepare_module(path, download_config=download_config, dataset=True)
531
532 # Get dataset builder class from the processing script
/usr/local/lib/python3.6/dist-packages/nlp/load.py in prepare_module(path, download_config, dataset, force_local_path, **download_kwargs)
265
266 # Download external imports if needed
--> 267 imports = get_imports(local_path)
268 local_imports = []
269 library_imports = []
/usr/local/lib/python3.6/dist-packages/nlp/load.py in get_imports(file_path)
156 lines = []
157 with open(file_path, mode="r") as f:
--> 158 lines.extend(f.readlines())
159
160 logger.info("Checking %s for additional imports.", file_path)
/usr/lib/python3.6/encodings/ascii.py in decode(self, input, final)
24 class IncrementalDecoder(codecs.IncrementalDecoder):
25 def decode(self, input, final=False):
---> 26 return codecs.ascii_decode(input, self.errors)[0]
27
28 class StreamWriter(Codec,codecs.StreamWriter):
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position 111: ordinal not in range(128)
```
## Steps to reproduce
Install from nlp's master branch
```python
pip install git+https://github.com/huggingface/nlp.git
```
then run
```python
from nlp import load_dataset
# AmazonPhotos.zip is located in data/
dataset = load_dataset("xtreme", "PAN-X.en", data_dir='./data')
```
## OS / platform details
- `nlp` version: latest from master
- Platform: Linux-4.15.0-72-generic-x86_64-with-Ubuntu-18.04-bionic
- Python version: 3.6.9
- PyTorch version (GPU?): 1.4.0 (True)
- Tensorflow version (GPU?): 2.1.0 (True)
- Using GPU in script?: True
- Using distributed or parallel set-up in script?: False
## Proposed solution
Either change [line 762](https://github.com/huggingface/nlp/blob/7ada00b1d62f94eee22a7df38c6b01e3f27194b7/datasets/xtreme/xtreme.py#L762) in `xtreme.py` to include UTF-8 encoding:
```
# old
with open(filepath) as f
# new
with open(filepath, encoding='utf-8') as f
```
or raise a warning that suggests setting the locale explicitly, e.g.
```python
import locale
locale.setlocale(locale.LC_ALL, 'C.UTF-8')
```
I have a preference for the first solution. Let me know if you agree and I'll be happy to implement the simple fix! | {
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"Thanks!"
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"The cast function is now called inside `features.encode_example`.\r\nI also added `encode_batch` that was missing.\r\n\r\nMoreover I used the cast function in `Dataset.map` to support torch/tensorflow tensors or numpy arrays inputs.\r\n\r\nThere are tests for tensors inputs in metrics and in .map",
"I think we can merge"
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} | - Disallow the use of positional arguments to avoid `predictions` vs `references` mistakes
- Allow to directly feed numpy/pytorch/tensorflow/pandas objects in metrics | {
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"One note on features inference:\r\n\r\nif an arrow type is `struct of items` where each item is a `list`, then we return a `dict` in which each item is a `Sequence`.\r\nIt means that we don't use the Sequence <-> dict swap when we infer features.\r\n\r\nIt's fine because the swap is generally used in dataset scripts, in which features are defined (inferred features are discarded)",
"If it's fine for you @thomwolf we can merge this one :) ",
"Yes this is fine I think!"
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} | When applying a transform like `map`, some features were lost (and inferred features were used).
It was the case for ClassLabel, Translation, etc.
To fix that, I did some modifications in the `ArrowWriter`:
- added the `update_features` parameter. When it's `True`, then the features specified by the user (if any) can be updated with inferred features if their type don't match. `map` transform sets `update_features=True` when writing to cache file or buffer. Features won't change by default in `map`.
- added the `with_metadata` parameter. If `True`, the `features` (after update) will be written inside the metadata of the schema in this format:
```
{
"huggingface": {"features" : <serialized Features exactly like dataset_info.json>}
}
```
Then, once a dataset is instantiated without info/features, these metadata are used to set the features of the dataset. | {
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These methods are added to `Dataset` as well as `DatasetDict`.
Added tests for these new methods and add the methods to the doc.
Naming follows the new pattern with a trailing underscore indicating in-place methods. | {
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"I think the problem is related to `wiki_dpr` dataset which is making the circle CI failed as you can see:\r\n```\r\nFAILED tests/test_dataset_common.py::AWSDatasetTest::test_load_dataset_wiki_dpr\r\nFAILED tests/test_hf_gcp.py::TestDatasetOnHfGcp::test_script_synced_with_s3_wiki_dpr/dummy_psgs_w100_no_embeddings\r\nFAILED tests/test_hf_gcp.py::TestDatasetOnHfGcp::test_script_synced_with_s3_wiki_dpr/dummy_psgs_w100_with_nq_embeddings\r\nFAILED tests/test_hf_gcp.py::TestDatasetOnHfGcp::test_script_synced_with_s3_wiki_dpr/psgs_w100_no_embeddings\r\nFAILED tests/test_hf_gcp.py::TestDatasetOnHfGcp::test_script_synced_with_s3_wiki_dpr/psgs_w100_with_nq_embeddings\r\n\r\n```\r\nI'm facing the same issues with my last commits, I tried to rebase from master but it still not working. Maybe @lhoestq can help with.",
"Hello, I am confused about the next steps I need to do. Did the forced merge solve the issue ?",
"Hello :)\r\nI think you can just rebase from master and it should solve the CI error"
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The load_real_data stills fails because it is looking for a default dataset URL that does not exists, this does not happen when loading the dataset with load_dataset | {
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"Thanks @TevenLeScao for finding this issue",
"Thanks @lhoestq for catching this ❤️"
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Therefore the next time you called map, it was loading an incomplete arrow file.
We had the same issue with select if there was a bad indice at one point.
To fix that I used temporary files that are renamed once everything is finished. | {
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} | This PR contains a few breaking changes so it's probably good to keep it for the next (major) release:
- rename the `flatten`, `drop` and `dictionary_encode_column` methods in `flatten_`, `drop_` and `dictionary_encode_column_` to indicate that these methods have in-place effects as discussed in #166. From now on we should keep the convention of having a trailing underscore for methods which have an in-place effet. I also adopt the conversion of not returning the (self) dataset for these methods. This is different than what PyTorch does for instance (`model.to()` is in-place but return the self model) but I feel like it's a safer approach in terms of UX.
- remove the `dataset.columns` property which returns a low-level Apache Arrow object and should not be used by users. Similarly, remove `dataset. nbytes` which we don't really want to expose in this bare-bone format.
- add a few more properties and methods to `DatasetDict` | {
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Also changed the function call to use named rather than positional arguments. | {
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Add tests to these for `Dataset` and `DatasetDict`.
Fix some bugs uncovered by the tests for `pandas` formating. | {
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"Sorry one nit: Could we use named arguments for the call to BLEURT?\r\n\r\ni.e. \r\n scores = self.scorer.score(references=references, candidates=predictions)\r\n\r\n(i.e. so it is less bug prone)\r\n",
"Following up on Ankur's comment---we are going to drop support for\npositional (not named) arguments in the future releases because it seems to\ncause bugs and confusion. I hope it doesn't create too much of a mess.\n\nLe jeu. 30 juil. 2020 à 10:44, ankparikh <notifications@github.com> a\nécrit :\n\n> Sorry one nit: Could we use named arguments for the call to BLEURT?\n>\n> i.e.\n> scores = self.scorer.score(references=references, candidates=predictions)\n>\n> (i.e. so it is less bug prone)\n>\n> —\n> You are receiving this because you were mentioned.\n> Reply to this email directly, view it on GitHub\n> <https://github.com/huggingface/nlp/pull/455#issuecomment-666414514>, or\n> unsubscribe\n> <https://github.com/notifications/unsubscribe-auth/ABTMRNGAN2PMECS5K4DIHJDR6GBMLANCNFSM4PL323FA>\n> .\n>\n",
"> Following up on Ankur's comment---we are going to drop support for positional (not named) arguments in the future releases because it seems to cause bugs and confusion. I hope it doesn't create too much of a mess. Le jeu. 30 juil. 2020 à 10:44, ankparikh <notifications@github.com> a écrit :\r\n> […](#)\r\n> Sorry one nit: Could we use named arguments for the call to BLEURT? i.e. scores = self.scorer.score(references=references, candidates=predictions) (i.e. so it is less bug prone) — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <[#455 (comment)](https://github.com/huggingface/nlp/pull/455#issuecomment-666414514)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABTMRNGAN2PMECS5K4DIHJDR6GBMLANCNFSM4PL323FA> .\r\n\r\nChanged @ankparikh @tsellam, thanks for taking a look!",
"We should avoid positional arguments in metrics on our side as well. It's a dangerous source of errors indeed."
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The BLEURT `Metric` downloads a TF checkpoint corresponding to its `config_name` at creation (in the `_info` function). Default is set to `bleurt-base-128`.
Note that the default in the original package is `bleurt-tiny-128`, but they throw a warning and recommend using `bleurt-base-128` instead. I think it's safer to have our users have a functioning metric when they call the default behavior, we'll address discrepancies in the issues/discussions if it comes up.
In addition to the BLEURT file, `load.py` was changed so we can ask users to pip install the required packages from git when they have a `setup.py` but are not on PyPL
cc @ankparikh @tsellam | {
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"Hi ! Glad you managed to fix the version issue.\r\n\r\nThe command `\r\npython nlp-cli dummy_data datasets/guardian_authorship --save_infos --all_configs` is supposed to generate a json file `dataset_infos.json` next to your dataset script, but I can't see it in the PR.\r\nCan you make sure you have the json file on your side and that you have pushed it ?",
"Done!",
"Is there anything else that I should do? and would the new dataset be available via the NLP package now? ",
"Sorry I forgot to merge this one ! Doing it now",
"Thanks for the heads up ;)",
"No worries, this is my first contribution to an online package, and I feel very proud it's part of this library :) Thank you very much!"
] | 1,595,989,437,000 | 1,597,936,197,000 | 1,597,936,076,000 | CONTRIBUTOR | null | false | {
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} | A new dataset: Guardian news articles for authorship attribution
**tests passed:**
python nlp-cli dummy_data datasets/guardian_authorship --save_infos --all_configs
RUN_SLOW=1 pytest tests/test_dataset_common.py::LocalDatasetTest::test_load_dataset_all_configs_guardian_authorship
**Tests failed:**
Real data: RUN_SLOW=1 pytest tests/test_dataset_common.py::LocalDatasetTest::test_load_real_dataset_guardian_authorship
output: __init__() missing 3 required positional arguments: 'train_folder', 'valid_folder', and 'tes...'
Remarks: This is the init function of my class. I am not sure why it passes in both my tests and with nlp-cli, but fails here. By the way, I ran this command with another 2 datasets and they failed:
* _glue - OSError: Cannot find data file.
*_newsgroup - FileNotFoundError: Local file datasets/newsgroup/dummy/18828_comp.graphics/3.0.0/dummy_data.zip doesn't exist
Thank you for letting us contribute to such a huge and important library!
EDIT:
I was able to fix the dummy_data issue. This dataset has around 14 configurations. I was testing with only 2, but their versions were not in a sequence, they were V1.0.0 and V.12.0.0. It seems that the testing code generates testes for all the versions from 0 to MAX, and was testing for versions (and dummy_data.zip files) that do not exist. I fixed that by changing the versions to 1 and 2.
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"I think this is the way to go but I’m afraid this might be a little slow. I was thinking that we could use a high quality very fast non crypto hash like xxhash for these stuff (hashing data files)",
"Yep good idea, I'll take a look",
"I tested the hashing speed [here](https://colab.research.google.com/drive/1hlhP84kLIHmOzMRQN1h8x10hKWpXXyud?usp=sharing).\r\nI was able to get 8x speed with `xxhashlib` (42ms vs 345ms for 100MiB of data).\r\nWhat do you think @thomwolf ?",
"I added xxhash and some tests"
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} | The cache dir for csv/json/txt datasets was always the same. This is an issue because it should be different depending on the data files provided by the user.
To fix that, I added a line that use the hash of the data files provided by the user to define the cache dir.
This should fix #444 | {
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#353 | {
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"> Awesome !\r\n> Good job on parsing these files :O\r\n> \r\n> Do you think it would be hard to get the two other split configurations ?\r\n\r\nIt shouldn't be that hard, I think I can consider different config names for each split ",
"> > Awesome !\r\n> > Good job on parsing these files :O\r\n> > Do you think it would be hard to get the two other split configurations ?\r\n> \r\n> It shouldn't be that hard, I think I can consider different config names for each split\r\n\r\nYes that would be perfect",
"closing this PR and opening a new one to fix the circle CI problems"
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} | This PR adds the `Reuters_21578` dataset https://kdd.ics.uci.edu/databases/reuters21578/reuters21578.html
#353
The datasets is a lit of `.sgm` files which are a bit different from xml file indeed `xml.etree` couldn't be used to read files. I consider them as text file (to avoid using external library) and read line by line (maybe there is a better way to do, happy to get your opinion on it)
In the Readme file 3 ways to split the dataset are given.:
- The Modified Lewis ("ModLewis") Split: train, test and unused-set
- The Modified Apte ("ModApte") Split : train, test and unused-set
- The Modified Hayes ("ModHayes") Split: train and test
Here I consider the last one as the readme file highlight that this split provides the ability to compare results with those of the 2 first splits.
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"Could you run `make style` to fix the code_quality fail ?\r\nYou'll need `black` and `isort` that you can install by doing `pip install -e .[quality]`",
"Thanks @lhoestq\r\nI fixed the styling",
"Thank you :)"
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Added a test to recognize import errors of all metrics | {
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"This issue was resolved by #447 "
] | 1,595,921,490,000 | 1,595,941,136,000 | 1,595,941,136,000 | CONTRIBUTOR | null | null | null | Latest Version 0.3.0
When loading the metric "sacrebleu" there is an import error due to the wrong path
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"Same here !",
"This is the only fix I could come up with without touching the repo's code.\r\n```python\r\nfrom nlp.builder import FORCE_REDOWNLOAD\r\ndataset = load_dataset('csv', data_file='./a.csv', download_mode=FORCE_REDOWNLOAD, version='0.0.1')\r\n```\r\nYou'll have to change the version each time you want to load a different csv file.\r\nIf you're willing to add a ```print```, you can go to ```nlp.load``` and add ```print(builder_instance.cache_dir)``` right before the ```return ds``` in the ```load_dataset``` method. It'll print the cache folder, and you'll just have to erase it (and then you won't need the change here above)."
] | 1,595,855,286,000 | 1,596,031,042,000 | 1,596,031,042,000 | NONE | null | null | null | I used load a file called 'a.csv' by
```
dataset = load_dataset('csv', data_file='./a.csv')
```
And after a while, I tried to load another csv called 'b.csv'
```
dataset = load_dataset('csv', data_file='./b.csv')
```
However, the new dataset seems to remain the old 'a.csv' and not loading new csv file.
Even worse, after I load a.csv, the load_dataset function keeps loading the 'a.csv' afterward.
Is this a cache problem?
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"This seems to be fixed in a non-released version. \r\n\r\nInstalling nlp from source\r\n```\r\ngit clone https://github.com/huggingface/nlp\r\ncd nlp\r\npip install .\r\n```\r\nsolves the issue. "
] | 1,595,852,017,000 | 1,595,855,111,000 | 1,595,855,111,000 | CONTRIBUTOR | null | null | null | Saving a formatted torch dataset to file using `torch.save()`. Loading the same file fails during unpickling:
```python
>>> import torch
>>> import nlp
>>> squad = nlp.load_dataset("squad.py", split="train")
>>> squad
Dataset(features: {'source_text': Value(dtype='string', id=None), 'target_text': Value(dtype='string', id=None)}, num_rows: 87599)
>>> squad = squad.map(create_features, batched=True)
>>> squad.set_format(type="torch", columns=["source_ids", "target_ids", "attention_mask"])
>>> torch.save(squad, "squad.pt")
>>> squad_pt = torch.load("squad.pt")
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/torch/serialization.py", line 593, in load
return _legacy_load(opened_file, map_location, pickle_module, **pickle_load_args)
File "/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/torch/serialization.py", line 773, in _legacy_load
result = unpickler.load()
File "/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/nlp/splits.py", line 493, in __setitem__
raise ValueError("Cannot add elem. Use .add() instead.")
ValueError: Cannot add elem. Use .add() instead.
```
where `create_features` is a function that tokenizes the data using `batch_encode_plus` and returns a Dict with `input_ids`, `target_ids` and `attention_mask`.
```python
def create_features(batch):
source_text_encoding = tokenizer.batch_encode_plus(
batch["source_text"],
max_length=max_source_length,
pad_to_max_length=True,
truncation=True)
target_text_encoding = tokenizer.batch_encode_plus(
batch["target_text"],
max_length=max_target_length,
pad_to_max_length=True,
truncation=True)
features = {
"source_ids": source_text_encoding["input_ids"],
"target_ids": target_text_encoding["input_ids"],
"attention_mask": source_text_encoding["attention_mask"]
}
return features
```
I found a similar issue in [issue 5267 in the huggingface/transformers repo](https://github.com/huggingface/transformers/issues/5267) which was solved by downgrading to `nlp==0.2.0`. That did not solve this problem, however. | {
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] | open | false | null | [] | null | [] | 1,595,847,598,000 | 1,598,282,000,000 | null | NONE | null | null | null | Hello! First of all, thanks for setting up this useful project!
I've just realised you provide the the [Glue Diagnostics Data](https://huggingface.co/nlp/viewer/?dataset=glue&config=ax) without labels, indicating in the `GlueConfig` that you've only a test set.
Yet, the data with labels is available, too (see also [here](https://gluebenchmark.com/diagnostics#introduction)):
https://www.dropbox.com/s/ju7d95ifb072q9f/diagnostic-full.tsv?dl=1
Have you considered incorporating it? | {
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"This one is ready for review now",
"I changed to using features only, instead of info.\r\nLet mw know if it sounds good to you now @thomwolf "
] | 1,595,843,401,000 | 1,596,113,477,000 | 1,596,113,476,000 | MEMBER | null | false | {
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If they don't match the data type, it raises a `ValueError`.
It's a draft PR because #440 needs to be merged first. | {
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The writer used to overwrite the user specified features with inferred features.
I also added tests to make sure it doesn't happen again. | {
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"`DPRContextEncoder` and `DPRContextEncoderTokenizer` will be available in the next release of `transformers`.\r\n\r\nRight now you can experiment with it by installing `transformers` from the master branch.\r\nYou can also check the docs of DPR [here](https://huggingface.co/transformers/master/model_doc/dpr.html).\r\n\r\nMoreover all the indexing features will also be available in the next release of `nlp`.",
"@lhoestq Thanks for the info ",
"@lhoestq I tried installing transformer from the master branch. Python imports for DPR again didnt' work. Anyways, Looking forward to trying it in the next release of nlp ",
"@nsankar have you tried with the latest version of the library?",
"@yjernite it worked. Thanks"
] | 1,595,823,917,000 | 1,603,849,584,000 | 1,603,849,584,000 | NONE | null | null | null | It seems the DPRContextEncoder, DPRContextEncoderTokenizer cited[ in this documentation](https://huggingface.co/nlp/faiss_and_ea.html) is not implemented ? It didnot work with the standard nlp installation . Also, I couldn't find or use it with the latest nlp install from github in Colab. Is there any dependency on the latest PyArrow 1.0.0 ? Is it yet to be made generally available ? | {
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"Thanks Sam, we now have a very detailed tutorial and template on how to add a new dataset to the library. It typically take 1-2 hours to add one. Do you want to give it a try ?\r\nThe tutorial on writing a new dataset loading script is here: https://huggingface.co/nlp/add_dataset.html\r\nAnd the part on how to share a new dataset is here: https://huggingface.co/nlp/share_dataset.html",
"Hi @sshleifer, I'm trying to add IWSLT using the link you provided but the download urls are not working. Only `[en, de]` pair is working. For others language pairs it throws a `404` error.\r\n\r\n"
] | 1,595,799,784,000 | 1,598,281,935,000 | null | MEMBER | null | null | null | **Links:**
[iwslt](https://pytorchnlp.readthedocs.io/en/latest/_modules/torchnlp/datasets/iwslt.html)
Don't know if that link is up to date.
[ittb](http://www.cfilt.iitb.ac.in/iitb_parallel/)
**Motivation**: replicate mbart finetuning results (table below)
For future readers, we already have the following language pairs in the wmt namespaces:
```
wmt14: ['cs-en', 'de-en', 'fr-en', 'hi-en', 'ru-en']
wmt15: ['cs-en', 'de-en', 'fi-en', 'fr-en', 'ru-en']
wmt16: ['cs-en', 'de-en', 'fi-en', 'ro-en', 'ru-en', 'tr-en']
wmt17: ['cs-en', 'de-en', 'fi-en', 'lv-en', 'ru-en', 'tr-en', 'zh-en']
wmt18: ['cs-en', 'de-en', 'et-en', 'fi-en', 'kk-en', 'ru-en', 'tr-en', 'zh-en']
wmt19: ['cs-en', 'de-en', 'fi-en', 'gu-en', 'kk-en', 'lt-en', 'ru-en', 'zh-en', 'fr-de']
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/437 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/437/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/437/comments | https://api.github.com/repos/huggingface/datasets/issues/437/events | https://github.com/huggingface/datasets/pull/437 | 665,597,176 | MDExOlB1bGxSZXF1ZXN0NDU2NjIzNjc3 | 437 | Fix XTREME PAN-X loading | {
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"There is an interesting design question here (cc @lhoestq).\r\n\r\nI guess the labels form a closed set so we could also use a [nlp.ClassLabel](https://huggingface.co/nlp/package_reference/main_classes.html#nlp.ClassLabel) instead of a string. The differences will be mainly that:\r\n- the labels are stored as integers and thus ready for training a model\r\n- the string to int conversion methods are handled by the `nlp.ClassLabel` feature (see the [doc](https://huggingface.co/nlp/package_reference/main_classes.html#nlp.ClassLabel) and [here](https://huggingface.co/nlp/features.html) and [here](https://huggingface.co/nlp/quicktour.html#fine-tuning-a-deep-learning-model)).\r\n\r\nIn my opinion, storing the labels as integers instead of strings makes it:\r\n- slightly less readable when accessing a dataset example (e.g. with `dataset[0]`)\r\n- force you with a specific mapping from string to integers\r\n- more clear that there is a fixed and predefined list of labels\r\n- easier to list all the labels (directly visible in the features).\r\n\r\n=> overall I'm pretty neutral about using one or the other option (`nlp.string` or `nlp.ClassLabel`).\r\n\r\nNote that we can now rather easily convert from one to the other with the map function and something like:\r\n```python\r\ndataset = dataset.map(lambda x: x, features=nlp.Features({'labels': nlp.ClassLabel(MY_LABELS_NAMES)}))\r\ndataset = dataset.map(lambda x: {'labels': dataset.features['labels'].int2str(x['labels'])}, features=nlp.Features({'labels': nlp.Value('string')}))\r\n```\r\n^^ this could probably be made even simpler (in particular for the second case)",
"I see. This is an interesting question.\r\nMaybe as the dataset doesn't provide the mapping we shouldn't force an arbitrary one, and keep them as strings ?\r\nMoreover for NER the labels are often different from a dataset to the other so it's probably good to keep strings (there is no conventional mapping).\r\nAlso as the column is called \"ner_tags\" (or \"langs\"), you can already assume that there is a fixed and predefined list of labels.",
"Yes sounds good to me.\r\nThis make me wonder if we don’t want to have a default identity function in `map` so this method could also be used to easily cast features. What do you think?",
"Yes sounds good. I also noticed that people use map with identity to write a dataset into a specified cache file."
] | 1,595,688,297,000 | 1,596,097,695,000 | 1,596,097,695,000 | CONTRIBUTOR | null | false | {
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} | Hi 🤗
In response to the discussion in #425 @lewtun and I made some fixes to the repo. In the original XTREME implementation the PAN-X dataset for named entity recognition loaded each word/tag pair as a single row and the sentence relation was lost. With the fix each row contains the list of all words in a single sentence and their NER tags. This is also in agreement with the [NER example](https://github.com/huggingface/transformers/tree/master/examples/token-classification) in the transformers repo.
With the fix the output of the dataset should look as follows:
```python
>>> dataset = load_dataset("xtreme", "PAN-X.en", data_dir='./data')
>>> dataset['train'][0]
{'words': ['R.H.', 'Saunders', '(', 'St.', 'Lawrence', 'River', ')', '(', '968', 'MW', ')'],
'ner_tags': ['B-ORG', 'I-ORG', 'O', 'B-ORG', 'I-ORG', 'I-ORG', 'O', 'O', 'O', 'O', 'O'],
'langs': ['en', 'en', 'en', 'en', 'en', 'en', 'en', 'en', 'en', 'en', 'en']}
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/436 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/436/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/436/comments | https://api.github.com/repos/huggingface/datasets/issues/436/events | https://github.com/huggingface/datasets/issues/436 | 665,582,167 | MDU6SXNzdWU2NjU1ODIxNjc= | 436 | Google Colab - load_dataset - PyArrow exception | {
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"Indeed, we’ll make a new PyPi release next week to solve this. Cc @lhoestq ",
"+1! this is the reason our tests are failing at [TextAttack](https://github.com/QData/TextAttack) \r\n\r\n(Though it's worth noting if we fixed the version number of pyarrow to 0.16.0 that would fix our problem too. But in this case we'll just wait for you all to update)",
"Came to raise this issue, great to see other already have and it's being fixed so soon!\r\n\r\nAs an aside, since no one wrote this already, it seems like the version check only looks at the second part of the version number making sure it is >16, but pyarrow newest version is 1.0.0 so the second past is 0!",
"> Indeed, we’ll make a new PyPi release next week to solve this. Cc @lhoestq\r\n\r\nYes definitely",
"please fix this on pypi! @lhoestq ",
"Is this issue fixed ?",
"We’ll release the new version later today. Apologies for the delay.",
"I just pushed the new version on pypi :)",
"Thanks for the update."
] | 1,595,682,320,000 | 1,597,910,898,000 | 1,597,910,898,000 | NONE | null | null | null | With latest PyArrow 1.0.0 installed, I get the following exception . Restarting colab has the same issue
ImportWarning: To use `nlp`, the module `pyarrow>=0.16.0` is required, and the current version of `pyarrow` doesn't match this condition. If you are running this in a Google Colab, you should probably just restart the runtime to use the right version of `pyarrow`.
The error goes only when I install version 0.16.0
i.e. !pip install pyarrow==0.16.0 | {
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https://api.github.com/repos/huggingface/datasets/issues/435 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/435/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/435/comments | https://api.github.com/repos/huggingface/datasets/issues/435/events | https://github.com/huggingface/datasets/issues/435 | 665,507,141 | MDU6SXNzdWU2NjU1MDcxNDE= | 435 | ImportWarning for pyarrow 1.0.0 | {
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"This was fixed in #434 \r\nWe'll do a release later this week to include this fix.\r\nThanks for reporting",
"I dont know if the fix was made but the problem is still present : \r\nInstaled with pip : NLP 0.3.0 // pyarrow 1.0.0 \r\nOS : archlinux with kernel zen 5.8.5",
"Yes it was fixed in `nlp>=0.4.0`\r\nYou can update with pip",
"Sorry, I didn't got the updated version, all is now working perfectly thanks"
] | 1,595,648,679,000 | 1,599,587,835,000 | 1,596,472,652,000 | NONE | null | null | null | The following PR raised ImportWarning at `pyarrow ==1.0.0` https://github.com/huggingface/nlp/pull/265/files | {
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https://api.github.com/repos/huggingface/datasets/issues/434 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/434/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/434/comments | https://api.github.com/repos/huggingface/datasets/issues/434/events | https://github.com/huggingface/datasets/pull/434 | 665,477,638 | MDExOlB1bGxSZXF1ZXN0NDU2NTM3Njgz | 434 | Fixed check for pyarrow | {
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"Great, thanks!"
] | 1,595,636,213,000 | 1,595,658,994,000 | 1,595,658,994,000 | CONTRIBUTOR | null | false | {
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"Hi @ArneBinder, we have a few \"generic\" datasets which are intended to load data files with a predefined format:\r\n- csv: https://github.com/huggingface/nlp/tree/master/datasets/csv\r\n- json: https://github.com/huggingface/nlp/tree/master/datasets/json\r\n- text: https://github.com/huggingface/nlp/tree/master/datasets/text\r\n\r\nYou can find more details about this way to load datasets here in the documentation: https://huggingface.co/nlp/loading_datasets.html#from-local-files\r\n\r\nMaybe your brat loading script could be shared in a similar fashion?",
"> Maybe your brat loading script could be shared in a similar fashion?\r\n\r\n@thomwolf that was also my first idea and I think I will tackle that in the next days. I separated the code and created a real abstract class `AbstractBrat` to allow to inherit from that (I've just seen that the dataset_loader loads the first non abstract class), now `Brat` is very similar in its functionality to https://github.com/huggingface/nlp/tree/master/datasets/text but inherits from `AbstractBrat`.\r\n\r\nHowever, it is still not clear to me how to add a specific dataset (as explained in https://huggingface.co/nlp/add_dataset.html) to your repo that uses this format/abstract class, i.e. re-using the `features` entry of the `DatasetInfo` object and `_generate_examples()`. Again, by doing so, the only remaining entries/functions to define would be `_DESCRIPTION`, `_CITATION`, `homepage` and `_URL` (which is all copy-paste stuff) and `_split_generators()`.\r\n \r\nIn a lack of better ideas, I tried sth like below, but of course it does not work outside `nlp` (`AbstractBrat` is currently defined in [datasets/brat.py](https://github.com/ArneBinder/nlp/blob/5e81fb8710546ee7be3353a7f02a3045e9a8351e/datasets/brat/brat.py)):\r\n```python\r\nfrom __future__ import absolute_import, division, print_function\r\n\r\nimport os\r\n\r\nimport nlp\r\n\r\nfrom datasets.brat.brat import AbstractBrat\r\n\r\n_CITATION = \"\"\"\r\n@inproceedings{lauscher2018b,\r\n title = {An argument-annotated corpus of scientific publications},\r\n booktitle = {Proceedings of the 5th Workshop on Mining Argumentation},\r\n publisher = {Association for Computational Linguistics},\r\n author = {Lauscher, Anne and Glava\\v{s}, Goran and Ponzetto, Simone Paolo},\r\n address = {Brussels, Belgium},\r\n year = {2018},\r\n pages = {40–46}\r\n}\r\n\"\"\"\r\n\r\n_DESCRIPTION = \"\"\"\\\r\nThis dataset is an extension of the Dr. Inventor corpus (Fisas et al., 2015, 2016) with an annotation layer containing \r\nfine-grained argumentative components and relations. It is the first argument-annotated corpus of scientific \r\npublications (in English), which allows for joint analyses of argumentation and other rhetorical dimensions of \r\nscientific writing.\r\n\"\"\"\r\n\r\n_URL = \"http://data.dws.informatik.uni-mannheim.de/sci-arg/compiled_corpus.zip\"\r\n\r\n\r\nclass Sciarg(AbstractBrat):\r\n\r\n VERSION = nlp.Version(\"1.0.0\")\r\n\r\n def _info(self):\r\n\r\n brat_features = super()._info().features\r\n return nlp.DatasetInfo(\r\n # This is the description that will appear on the datasets page.\r\n description=_DESCRIPTION,\r\n # nlp.features.FeatureConnectors\r\n features=brat_features,\r\n # If there's a common (input, target) tuple from the features,\r\n # specify them here. They'll be used if as_supervised=True in\r\n # builder.as_dataset.\r\n #supervised_keys=None,\r\n # Homepage of the dataset for documentation\r\n homepage=\"https://github.com/anlausch/ArguminSci\",\r\n citation=_CITATION,\r\n )\r\n\r\n def _split_generators(self, dl_manager):\r\n \"\"\"Returns SplitGenerators.\"\"\"\r\n # TODO: Downloads the data and defines the splits\r\n # dl_manager is a nlp.download.DownloadManager that can be used to\r\n # download and extract URLs\r\n dl_dir = dl_manager.download_and_extract(_URL)\r\n data_dir = os.path.join(dl_dir, \"compiled_corpus\")\r\n print(f'data_dir: {data_dir}')\r\n return [\r\n nlp.SplitGenerator(\r\n name=nlp.Split.TRAIN,\r\n # These kwargs will be passed to _generate_examples\r\n gen_kwargs={\r\n \"directory\": data_dir,\r\n },\r\n ),\r\n ]\r\n``` \r\n\r\nNevertheless, many thanks for tackling the dataset accessibility problem with this great library!",
"As temporary fix I've created [ArneBinder/nlp-formats](https://github.com/ArneBinder/nlp-formats) (contributions welcome)."
] | 1,595,611,657,000 | 1,596,190,997,000 | null | NONE | null | null | null | I have written a generic dataset for corpora created with the Brat annotation tool ([specification](https://brat.nlplab.org/standoff.html), [dataset code](https://github.com/ArneBinder/nlp/blob/brat/datasets/brat/brat.py)). Now I wonder how to use that to create specific dataset instances. What's the recommended way to reuse formats and loading functionality for datasets with a common format?
In my case, it took a bit of time to create the Brat dataset and I think others would appreciate to not have to think about that again. Also, I assume there are other formats (e.g. conll) that are widely used, so having this would really ease dataset onboarding and adoption of the library. | {
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https://api.github.com/repos/huggingface/datasets/issues/432 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/432/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/432/comments | https://api.github.com/repos/huggingface/datasets/issues/432/events | https://github.com/huggingface/datasets/pull/432 | 665,234,340 | MDExOlB1bGxSZXF1ZXN0NDU2MzQxNDk3 | 432 | Fix handling of config files while loading datasets from multiple processes | {
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"Ok for this but I think we may want to use the general `filelock` method we are using at other places in the library instead of filecmp (in particular `filelock` take care of being an atomic operation which is safer for concurrent processes)",
"Ok I see.\r\nWhy not use filelock in this case then ?",
"I think we should 🙂",
"Thanks for approving my patch.\n\nI agree that if copying is needed then some locking mechanism should be put in place. But, I don't think a file should be needlessly copied without a check. So I guess the flow should be, lock => copy if needed => unlock, and add locks wherever else that file is being accessed.\n\nI'll also add that my personal experience with filelock on a different project hasn't been that great, and on some occasions a process somehow got through the lock -- I've never gotten to the bottom of that but it tainted my view of that module. Perhaps it's been fixed (or I just miss used it), but thought you should know to take steps to test it."
] | 1,595,603,457,000 | 1,596,301,902,000 | 1,596,097,528,000 | CONTRIBUTOR | null | false | {
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} | When loading shards on several processes, each process upon loading the dataset will overwrite dataset_infos.json in <package path>/datasets/<dataset name>/<hash>/dataset_infos.json. It does so every time, even when the target file already exists and is identical. Because multiple processes rewrite the same file in parallel, it creates a race condition when a process tries to load the file, often resulting in a JSON decoding exception because the file is only partially written.
This pull requests partially address this by comparing if the files are already identical before copying over the downloaded copy to the cached destination. There's still a race condition, but now it's less likely to occur if some basic precautions are taken by the library user, e.g., download all datasets to cache before spawning multiple processes. | {
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https://api.github.com/repos/huggingface/datasets/issues/431 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/431/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/431/comments | https://api.github.com/repos/huggingface/datasets/issues/431/events | https://github.com/huggingface/datasets/pull/431 | 665,044,416 | MDExOlB1bGxSZXF1ZXN0NDU2MTgyNDE2 | 431 | Specify split post processing + Add post processing resources downloading | {
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"I was using a hack in `wiki_dpr` to download the index from GCS even for the configurations without the embeddings.\r\nHowever as GCS is something internal, I changed the logic to add a download step for indexes directly in the dataset script, using the `DownloadManager`.\r\n\r\nThis change was directly linked to the changes I did to take into account the split name in the post processing, so I included this change in this PR too.\r\n\r\nTo summarize:\r\n\r\nDataset builders can now implement\r\n- `_post_processing_resources(split)`: return a dict `resource_name -> resource_file_name`. It defines the additional resources such as indexes or arrow files that you need in post processing\r\n- `_download_post_processing_resources(split, resource_name, dl_manager))`: if some resources can be downloaded, you can use the download_manager to download them\r\n- `_post_process(dataset, resources_path)`: (main function for post processing) given a dataset, you can apply dataset transforms or add indexes. For resources that have been downloaded, you can load them. For the others, you can generate and save them. The paths to load/save resources are in `resources_path` which is a dictionary `resource_name -> resource_path`\r\n\r\nAbout the CI:\r\n```\r\n=========================== short test summary info ============================\r\nFAILED tests/test_dataset_common.py::AWSDatasetTest::test_load_dataset_wiki_dpr\r\n```\r\nIt fails because I changed the input of post processing functions (to include the split name)",
"I started to add metadata in the DatasetInfo.\r\nNote that because there are new fields, **ALL the dataset_info[s].json generated after these changes won't be loadable from older versions of the lib**\r\n\r\nRight now it looks like this:\r\n```json\r\n \"post_processing_resources_checksums\": {\r\n \"train\": {\r\n \"embeddings_index\": {\r\n \"num_bytes\": 30720045,\r\n \"checksum\": \"b04fb4f4f3ab83b9d1b9f6f9eb236f1c04a9fd61bef7cee16b12df8ac911766a\"\r\n }\r\n }\r\n },\r\n \"post_processing_size\": 30720045,\r\n```",
"Good point. Should we anticipate already that we may add other fields in the future and change the code to support the addition of new fields without breaking backward compatibility in the future?",
"I added:\r\n- post processing features (inside a PostProcessedInfo object)\r\n- backward compatibility for dataset info\r\n- post processing tests (as_dataset and download_and_prepare) for map (change features), select (change number of elements) and add_faiss_index (add indexes)\r\nAnd I fixed a bug in `map` that I found thanks to the new tests\r\n\r\nNow I just have to move `post_processing_resources_checksums` to PostProcessedInfo as well and everything should be good :)\r\nEdit: done"
] | 1,595,582,959,000 | 1,596,186,304,000 | 1,596,186,303,000 | MEMBER | null | false | {
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} | Previously if you tried to do
```python
from nlp import load_dataset
wiki = load_dataset("wiki_dpr", "psgs_w100_with_nq_embeddings", split="train[:100]", with_index=True)
```
Then you'd get an error `Index size should match Dataset size...`
This was because it was trying to use the full index (21M elements).
To fix that I made it so post processing resources can be named according to the split.
I'm going to add tests on post processing too.
Note that the CI will fail as I added a new argument in `_post_processing_resources`: the AWS version of wiki_dpr fails, and there's also an error telling that it is not synced (it'll be synced once it's merged):
```
=========================== short test summary info ============================
FAILED tests/test_dataset_common.py::AWSDatasetTest::test_load_dataset_wiki_dpr
FAILED tests/test_hf_gcp.py::TestDatasetSynced::test_script_synced_with_s3_wiki_dpr
```
EDIT: I did a change to ignore the script hash to locate the arrow files on GCS, so I removed the sync test. It was there just because of the hash logic for files on GCS | {
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https://api.github.com/repos/huggingface/datasets/issues/430 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/430/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/430/comments | https://api.github.com/repos/huggingface/datasets/issues/430/events | https://github.com/huggingface/datasets/pull/430 | 664,583,837 | MDExOlB1bGxSZXF1ZXN0NDU1ODAxOTI2 | 430 | add DatasetDict | {
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"I did the changes in the docstrings and I added a type check in each `DatasetDict` method to make sure all values are of type `Dataset`",
"Awesome, do you mind adding these in the doc as well?",
"I added it to the docs (processing + main classes)",
"I'm trying to follow along with the following about datasets from the docs:\r\n\r\nhttps://huggingface.co/nlp/loading_datasets.html\r\nhttps://huggingface.co/nlp/processing.html\r\n\r\nHowever the train_test_split method no longer works as it is expecting a dataset, rather than a datsetdict. How would I got about splitting a CSV into a train and test set? \r\n\r\nI'm trying to utilize the Trainer() class, but am having trouble converting my data from a csv into dataset objects to pass in."
] | 1,595,519,029,000 | 1,596,502,913,000 | 1,596,013,582,000 | MEMBER | null | false | {
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} | ## Add DatasetDict
### Overview
When you call `load_dataset` it can return a dictionary of datasets if there are several splits (train/test for example).
If you wanted to apply dataset transforms you had to iterate over each split and apply the transform.
Instead of returning a dict, it now returns a `nlp.DatasetDict` object which inherits from dict and contains the same data as before, except that now users can call dataset transforms directly from the output, and they'll be applied on each split.
Before:
```python
from nlp import load_dataset
squad = load_dataset("squad")
print(squad.keys())
# dict_keys(['train', 'validation'])
squad = {
split_name: dataset.map(my_func) for split_name, dataset in squad.items()
}
print(squad.keys())
# dict_keys(['train', 'validation'])
```
Now:
```python
from nlp import load_dataset
squad = load_dataset("squad")
print(squad.keys())
# dict_keys(['train', 'validation'])
squad = squad.map(my_func)
print(squad.keys())
# dict_keys(['train', 'validation'])
```
### Dataset transforms
`nlp.DatasetDict` implements the following dataset transforms:
- map
- filter
- sort
- shuffle
### Arguments
The arguments of the methods are the same except for split-specific arguments like `cache_file_name`.
For such arguments, the expected input is a dictionary `{split_name: argument_value}`
It concerns:
- `cache_file_name` in map, filter, sort, shuffle
- `seed` and `generator` in shuffle | {
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"Thanks @RachelKer for this PR.\r\n\r\nI think the dummy_data structure does not also match. In the `_split_generator` you have something like `os.path.join(downloaded_files[\"validation\"], lang+'_val.jsonl')` but in you dummy_data you have `os.path.join(downloaded_files[\"validation\"], lang+\"_val.zip\", lang+'_val.jsonl')`. I think ` jsonl` files should be directly in the `dummy_data` folder without the sub-folder \r\n\r\n@lhoestq ",
"Hi @RachelKer :)\r\nThanks for adding MLSUM !\r\n\r\nTo fix the CI I think you just have to rebase from master",
"Great, I think it is working now. Thanks :)",
"It looks like your PR does tons of changes in other datasets. \r\nMaybe this is because of the merge from master ?",
"Hmm, I see, sorry I messed up somewhere. Maybe it's easier if we close the pull request and I do another one ?",
"Yea if it's easier for you feel free to re-open a PR"
] | 1,595,505,159,000 | 1,596,195,980,000 | 1,596,195,980,000 | CONTRIBUTOR | null | false | {
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} | Hello,
The tests for the load_real_data fail, as there is no default language subset to download it looks for a file that does not exist. This bug does not happen when using the load_dataset function, as it asks you to specify a language if you do not, so I submit this PR anyway. The dataset is avalaible on : https://gitlab.lip6.fr/scialom/mlsum_data | {
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} | `concatenate_datatsets` used to test that the different`nlp.Dataset.schema` match, but this attribute was removed in #423 | {
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} | ## Allow Sequence features for Beam Datasets + add Natural Questions
### The issue
The steps of beam datasets processing is the following:
- download the source files and send them in a remote storage (gcs)
- process the files using a beam runner (dataflow)
- save output in remote storage (gcs)
- convert output to arrow in remote storage (gcs)
However it wasn't possible to process `natural_questions` because apache beam's processing outputs parquet files, and it's not yet possible to read parquet files with list features.
### The proposed solution
To allow sequence features for beam I added a workaround that serializes the values using `json.dumps`, so that we end up with strings instead of the original features. Then when the arrow file is created, the serialized objects are transformed back to normal with `json.loads`. Not sure if there's a better way to do it.
### Natural Questions
I was able to process NQ with it, and so I added the json infos file in this PR too.
The processed arrow files are also stored in gcs.
It allows you to load NQ with
```python
from nlp import load_dataset
nq = load_dataset("natural_questions") # download the 90GB arrow files from gcs and return the dataset
```
### Tests
I added a test case to make sure it works as expected.
Note that the CI will fail because I am updating `natural_questions.py`: it's not synced with the script on S3. It will be synced as soon as this PR is merged.
```
=========================== short test summary info ============================
FAILED tests/test_hf_gcp.py::TestDatasetOnHfGcp::test_script_synced_with_s3_natural_questions/default
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/426 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/426/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/426/comments | https://api.github.com/repos/huggingface/datasets/issues/426/events | https://github.com/huggingface/datasets/issues/426 | 664,203,897 | MDU6SXNzdWU2NjQyMDM4OTc= | 426 | [FEATURE REQUEST] Multiprocessing with for dataset.map, dataset.filter | {
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"Yes that's definitely something we plan to add ^^",
"Yes, that would be nice. We could take a look at what tensorflow `tf.data` does under the hood for instance.",
"So `tf.data.Dataset.map()` returns a `ParallelMapDataset` if `num_parallel_calls is not None` [link](https://github.com/tensorflow/tensorflow/blob/2b96f3662bd776e277f86997659e61046b56c315/tensorflow/python/data/ops/dataset_ops.py#L1623).\r\n\r\nThere, `num_parallel_calls` is turned into a tensor and and fed to `gen_dataset_ops.parallel_map_dataset` where it looks like tensorflow takes over.\r\n\r\nWe could start with something simple like a thread or process pool that `imap`s over some shards.\r\n ",
"Multiprocessing was added in #552 . You can set the number of processes with `.map(..., num_proc=...)`. It also works for `filter`\r\n\r\nClosing this one, but feel free to reo-open if you have other questions",
"@lhoestq Great feature implemented! Do you have plans to add it to official tutorials [Processing data in a Dataset](https://huggingface.co/docs/datasets/processing.html?highlight=save#augmenting-the-dataset)? It took me sometime to find this parallel processing api.",
"Thanks for the heads up !\r\n\r\nI just added a paragraph about multiprocessing:\r\nhttps://huggingface.co/docs/datasets/master/processing.html#multiprocessing"
] | 1,595,480,441,000 | 1,615,541,652,000 | 1,599,490,084,000 | NONE | null | null | null | It would be nice to be able to speed up `dataset.map` or `dataset.filter`. Perhaps this is as easy as sharding the dataset sending each shard to a process/thread/dask pool and using the new `nlp.concatenate_dataset()` function to join them all together? | {
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https://api.github.com/repos/huggingface/datasets/issues/425 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/425/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/425/comments | https://api.github.com/repos/huggingface/datasets/issues/425/events | https://github.com/huggingface/datasets/issues/425 | 664,029,848 | MDU6SXNzdWU2NjQwMjk4NDg= | 425 | Correct data structure for PAN-X task in XTREME dataset? | {
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"Thanks for noticing ! This looks more reasonable indeed.\r\nFeel free to open a PR",
"Hi @lhoestq \r\nI made the proposed changes to the `xtreme.py` script. I noticed that I also need to change the schema in the `dataset_infos.json` file. More specifically the `\"features\"` part of the PAN-X.LANG dataset:\r\n\r\n```json\r\n\"features\":{\r\n \"word\":{\r\n \"dtype\":\"string\",\r\n \"id\":null,\r\n \"_type\":\"Value\"\r\n },\r\n \"ner_tag\":{\r\n \"dtype\":\"string\",\r\n \"id\":null,\r\n \"_type\":\"Value\"\r\n },\r\n \"lang\":{\r\n \"dtype\":\"string\",\r\n \"id\":null,\r\n \"_type\":\"Value\"\r\n }\r\n}\r\n```\r\nTo fit the code above the fields `\"word\"`, `\"ner_tag\"`, and `\"lang\"` would become `\"words\"`, `ner_tags\"` and `\"langs\"`. In addition the `dtype` should be changed from `\"string\"` to `\"list\"`.\r\n\r\n I made this changes but when trying to test this locally with `dataset = load_dataset(\"xtreme\", \"PAN-X.en\", data_dir='./data')` I face the issue that the `dataset_info.json` file is always overwritten by a downloaded version with the old settings, which then throws an error because the schema does not match. This makes it hard to test the changes locally. Do you have any suggestions on how to deal with that?\r\n",
"Hi !\r\n\r\nYou have to point to your local script.\r\nFirst clone the repo and then:\r\n\r\n```python\r\ndataset = load_dataset(\"./datasets/xtreme\", \"PAN-X.en\")\r\n```\r\nThe \"xtreme\" directory contains \"xtreme.py\".\r\n\r\nYou also have to change the features definition in the `_info` method. You could use:\r\n\r\n```python\r\nfeatures = nlp.Features({\r\n \"words\": [nlp.Value(\"string\")],\r\n \"ner_tags\": [nlp.Value(\"string\")],\r\n \"langs\": [nlp.Value(\"string\")],\r\n})\r\n```\r\n\r\nHope this helps !\r\nLet me know if you have other questions.",
"Thanks, I am making progress. I got a new error `NonMatchingSplitsSizesError ` (see traceback below), which I suspect is due to the fact that number of rows in the dataset changed (one row per word --> one row per sentence) as well as the number of bytes due to the slightly updated data structure. \r\n\r\n```python\r\nNonMatchingSplitsSizesError: [{'expected': SplitInfo(name='validation', num_bytes=1756492, num_examples=80536, dataset_name='xtreme'), 'recorded': SplitInfo(name='validation', num_bytes=1837109, num_examples=10000, dataset_name='xtreme')}, {'expected': SplitInfo(name='test', num_bytes=1752572, num_examples=80326, dataset_name='xtreme'), 'recorded': SplitInfo(name='test', num_bytes=1833214, num_examples=10000, dataset_name='xtreme')}, {'expected': SplitInfo(name='train', num_bytes=3496832, num_examples=160394, dataset_name='xtreme'), 'recorded': SplitInfo(name='train', num_bytes=3658428, num_examples=20000, dataset_name='xtreme')}]\r\n```\r\nI can fix the error by replacing the values in the `datasets_infos.json` file, which I tested for English. However, to update this for all 40 datasets manually is slightly painful. Is there a better way to update the expected values for all datasets?",
"You can update the json file by calling\r\n```\r\nnlp-cli test ./datasets/xtreme --save_infos --all_configs\r\n```",
"One more thing about features. I mentioned\r\n\r\n```python\r\nfeatures = nlp.Features({\r\n \"words\": [nlp.Value(\"string\")],\r\n \"ner_tags\": [nlp.Value(\"string\")],\r\n \"langs\": [nlp.Value(\"string\")],\r\n})\r\n```\r\n\r\nbut it's actually not consistent with the way we write datasets. Something like this is simpler to read and more consistent with the way we define datasets:\r\n\r\n```python\r\nfeatures = nlp.Features({\r\n \"words\": nlp.Sequence(nlp.Value(\"string\")),\r\n \"ner_tags\": nlp.Sequence(nlp.Value(\"string\")),\r\n \"langs\": nlp.Sequence(nlp.Value(\"string\")),\r\n})\r\n```\r\n\r\nSorry about that",
"Closing this since PR #437 fixed the problem and has been merged to `master`. "
] | 1,595,449,760,000 | 1,596,375,034,000 | 1,596,375,034,000 | MEMBER | null | null | null | Hi 🤗 team!
## Description of the problem
Thanks to the fix from #416 I am now able to load the NER task in the XTREME dataset as follows:
```python
from nlp import load_dataset
# AmazonPhotos.zip is located in data/
dataset = load_dataset("xtreme", "PAN-X.en", data_dir='./data')
dataset_train = dataset['train']
```
However, I am not sure that `load_dataset()` is returning the correct data structure for NER.
Currently, every row in `dataset_train` is of the form
```python
{'word': str, 'ner_tag': str, 'lang': str}
```
but I think we actually want something like
```python
{'words': List[str], 'ner_tags': List[str], 'langs': List[str]}
```
so that each row corresponds to a _sequence_ of words associated with each example. With the current data structure I do not think it is possible to transform `dataset_train` into a form suitable for training because we do not know the boundaries between examples.
Indeed, [this line](https://github.com/google-research/xtreme/blob/522434d1aece34131d997a97ce7e9242a51a688a/third_party/utils_tag.py#L58) in the XTREME repo, processes the texts as lists of sentences, tags, and languages.
## Proposed solution
Replace
```python
with open(filepath) as f:
data = csv.reader(f, delimiter="\t", quoting=csv.QUOTE_NONE)
for id_, row in enumerate(data):
if row:
lang, word = row[0].split(":")[0], row[0].split(":")[1]
tag = row[1]
yield id_, {"word": word, "ner_tag": tag, "lang": lang}
```
from [these lines](https://github.com/huggingface/nlp/blob/ce7d3a1d630b78fe27188d1706f3ea980e8eec43/datasets/xtreme/xtreme.py#L881-L887) of the `_generate_examples()` function with something like
```python
guid_index = 1
with open(filepath, encoding="utf-8") as f:
words = []
ner_tags = []
langs = []
for line in f:
if line.startswith("-DOCSTART-") or line == "" or line == "\n":
if words:
yield guid_index, {"words": words, "ner_tags": ner_tags, "langs": langs}
guid_index += 1
words = []
ner_tags = []
else:
# pan-x data is tab separated
splits = line.split("\t")
# strip out en: prefix
langs.append(splits[0][:2])
words.append(splits[0][3:])
if len(splits) > 1:
labels.append(splits[-1].replace("\n", ""))
else:
# examples have no label in test set
labels.append("O")
```
If you agree, me or @lvwerra would be happy to implement this and create a PR. | {
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https://api.github.com/repos/huggingface/datasets/issues/424 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/424/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/424/comments | https://api.github.com/repos/huggingface/datasets/issues/424/events | https://github.com/huggingface/datasets/pull/424 | 663,858,552 | MDExOlB1bGxSZXF1ZXN0NDU1MTk4MTY0 | 424 | Web of science | {
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#353 | {
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"I had to make `SplitDict` serializable to be able to copy `DatasetInfo` objects properly.\r\nSerialization was also asked in #389 ",
"One thing I forgot to say here, is that we also want to use the features arguments of `load_dataset` (which goes in the builder’s config) to override the default features of a dataset script."
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} | ## New logic for `nlp.Features` in datasets
Previously, it was confusing to have `features` and pyarrow's `schema` in `nlp.Dataset`.
However `features` is supposed to be the front-facing object to define the different fields of a dataset, while `schema` is only used to write arrow files.
Changes:
- Remove `schema` field in `nlp.Dataset`
- Make `features` the source of truth to read/write examples
- `features` can no longer be `None` in `nlp.Dataset`
- Update `features` after each dataset transform such as `nlp.Dataset.map`
Todo: change the tests to take these changes into account | {
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"What about the other PR #419 ?",
"Oh this is the PR where I ran make quality and make style and some previous files from master were changed",
"Oh right ! Let me fix the style myself if you don't mind"
] | 1,595,275,709,000 | 1,595,434,120,000 | 1,595,434,119,000 | CONTRIBUTOR | null | false | {
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https://api.github.com/repos/huggingface/datasets/issues/420 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/420/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/420/comments | https://api.github.com/repos/huggingface/datasets/issues/420/events | https://github.com/huggingface/datasets/pull/420 | 662,029,782 | MDExOlB1bGxSZXF1ZXN0NDUzNjI5OTk2 | 420 | Better handle nested features | {
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} | Changes:
- added arrow schema to features conversion (it's going to be useful to fix #342 )
- make flatten handle deep features (useful for tfrecords conversion in #339 )
- add tests for flatten and features conversions
- the reader now returns the kwargs to instantiate a Dataset (fix circular dependencies) | {
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https://api.github.com/repos/huggingface/datasets/issues/419 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/419/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/419/comments | https://api.github.com/repos/huggingface/datasets/issues/419/events | https://github.com/huggingface/datasets/pull/419 | 661,974,747 | MDExOlB1bGxSZXF1ZXN0NDUzNTgxNzQz | 419 | EmoContext dataset add | {
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} | EmoContext Dataset add
Signed-off-by: lordtt13 <thakurtanmay72@yahoo.com> | {
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https://api.github.com/repos/huggingface/datasets/issues/418 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/418/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/418/comments | https://api.github.com/repos/huggingface/datasets/issues/418/events | https://github.com/huggingface/datasets/issues/418 | 661,914,873 | MDU6SXNzdWU2NjE5MTQ4NzM= | 418 | Addition of google drive links to dl_manager | {
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"I think the problem is the way you wrote your urls. Try the following structure to see `https://drive.google.com/uc?export=download&id=your_file_id` . \r\n\r\n@lhoestq ",
"Oh sorry, I think `_get_drive_url` is doing that. \r\n\r\nHave you tried to use `dl_manager.download_and_extract(_get_drive_url(_TRAIN_URL)`? it should work with google drive links.\r\n",
"Yes it worked, thank you!"
] | 1,595,256,722,000 | 1,595,259,572,000 | 1,595,259,572,000 | CONTRIBUTOR | null | null | null | Hello there, I followed the template to create a download script of my own, which works fine for me, although I had to shun the dl_manager because it was downloading nothing from the drive links and instead use gdown.
This is the script for me:
```python
class EmoConfig(nlp.BuilderConfig):
"""BuilderConfig for SQUAD."""
def __init__(self, **kwargs):
"""BuilderConfig for EmoContext.
Args:
**kwargs: keyword arguments forwarded to super.
"""
super(EmoConfig, self).__init__(**kwargs)
_TEST_URL = "https://drive.google.com/file/d/1Hn5ytHSSoGOC4sjm3wYy0Dh0oY_oXBbb/view?usp=sharing"
_TRAIN_URL = "https://drive.google.com/file/d/12Uz59TYg_NtxOy7SXraYeXPMRT7oaO7X/view?usp=sharing"
class EmoDataset(nlp.GeneratorBasedBuilder):
""" SemEval-2019 Task 3: EmoContext Contextual Emotion Detection in Text. Version 1.0.0 """
VERSION = nlp.Version("1.0.0")
force = False
def _info(self):
return nlp.DatasetInfo(
description=_DESCRIPTION,
features=nlp.Features(
{
"text": nlp.Value("string"),
"label": nlp.features.ClassLabel(names=["others", "happy", "sad", "angry"]),
}
),
supervised_keys=None,
homepage="https://www.aclweb.org/anthology/S19-2005/",
citation=_CITATION,
)
def _get_drive_url(self, url):
base_url = 'https://drive.google.com/uc?id='
split_url = url.split('/')
return base_url + split_url[5]
def _split_generators(self, dl_manager):
"""Returns SplitGenerators."""
if(not os.path.exists("emo-train.json") or self.force):
gdown.download(self._get_drive_url(_TRAIN_URL), "emo-train.json", quiet = True)
if(not os.path.exists("emo-test.json") or self.force):
gdown.download(self._get_drive_url(_TEST_URL), "emo-test.json", quiet = True)
return [
nlp.SplitGenerator(
name=nlp.Split.TRAIN,
gen_kwargs={
"filepath": "emo-train.json",
"split": "train",
},
),
nlp.SplitGenerator(
name=nlp.Split.TEST,
gen_kwargs={"filepath": "emo-test.json", "split": "test"},
),
]
def _generate_examples(self, filepath, split):
""" Yields examples. """
with open(filepath, 'rb') as f:
data = json.load(f)
for id_, text, label in zip(data["text"].keys(), data["text"].values(), data["Label"].values()):
yield id_, {
"text": text,
"label": label,
}
```
Can someone help me in adding gdrive links to be used with default dl_manager or adding gdown as another dl_manager, because I'd like to add this dataset to nlp's official database. | {
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https://api.github.com/repos/huggingface/datasets/issues/417 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/417/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/417/comments | https://api.github.com/repos/huggingface/datasets/issues/417/events | https://github.com/huggingface/datasets/pull/417 | 661,804,054 | MDExOlB1bGxSZXF1ZXN0NDUzNDMyODE5 | 417 | Fix docstrins multiple metrics instances | {
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} | We change the docstrings of `nlp.Metric.compute`, `nlp.Metric.add` and `nlp.Metric.add_batch` depending on which metric is instantiated. However we had issues when instantiating multiple metrics (docstrings were duplicated).
This should fix #304 | {
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https://api.github.com/repos/huggingface/datasets/issues/416 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/416/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/416/comments | https://api.github.com/repos/huggingface/datasets/issues/416/events | https://github.com/huggingface/datasets/pull/416 | 661,635,393 | MDExOlB1bGxSZXF1ZXN0NDUzMjg1NTM4 | 416 | Fix xtreme panx directory | {
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"great, I think I did not download the data the way you do, but yours is more reasonable."
] | 1,595,239,757,000 | 1,595,319,346,000 | 1,595,319,344,000 | MEMBER | null | false | {
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https://api.github.com/repos/huggingface/datasets/issues/415 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/415/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/415/comments | https://api.github.com/repos/huggingface/datasets/issues/415/events | https://github.com/huggingface/datasets/issues/415 | 660,687,076 | MDU6SXNzdWU2NjA2ODcwNzY= | 415 | Something is wrong with WMT 19 kk-en dataset | {
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] | open | false | null | [] | null | [] | 1,595,146,731,000 | 1,595,238,866,000 | null | NONE | null | null | null | The translation in the `train` set does not look right:
```
>>>import nlp
>>>from nlp import load_dataset
>>>dataset = load_dataset('wmt19', 'kk-en')
>>>dataset["train"]["translation"][0]
{'kk': 'Trumpian Uncertainty', 'en': 'Трамптық белгісіздік'}
>>>dataset["validation"]["translation"][0]
{'kk': 'Ақша-несие саясатының сценарийін қайта жазсақ', 'en': 'Rewriting the Monetary-Policy Script'}
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/414 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/414/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/414/comments | https://api.github.com/repos/huggingface/datasets/issues/414/events | https://github.com/huggingface/datasets/issues/414 | 660,654,013 | MDU6SXNzdWU2NjA2NTQwMTM= | 414 | from_dict delete? | {
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"`from_dict` was added in #350 that was unfortunately not included in the 0.3.0 release. It's going to be included in the next release that will be out pretty soon though.\r\nRight now if you want to use `from_dict` you have to install the package from the master branch\r\n```\r\npip install git+https://github.com/huggingface/nlp.git\r\n```",
"> `from_dict` was added in #350 that was unfortunately not included in the 0.3.0 release. It's going to be included in the next release that will be out pretty soon though.\r\n> Right now if you want to use `from_dict` you have to install the package from the master branch\r\n> \r\n> ```\r\n> pip install git+https://github.com/huggingface/nlp.git\r\n> ```\r\nOK, thank you.\r\n"
] | 1,595,142,516,000 | 1,595,298,077,000 | 1,595,298,077,000 | NONE | null | null | null | AttributeError: type object 'Dataset' has no attribute 'from_dict' | {
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https://api.github.com/repos/huggingface/datasets/issues/413 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/413/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/413/comments | https://api.github.com/repos/huggingface/datasets/issues/413/events | https://github.com/huggingface/datasets/issues/413 | 660,063,655 | MDU6SXNzdWU2NjAwNjM2NTU= | 413 | Is there a way to download only NQ dev? | {
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"Unfortunately it's not possible to download only the dev set of NQ.\r\n\r\nI think we could add a way to download only the test set by adding a custom configuration to the processing script though.",
"Ok, got it. I think this could be a valuable feature - especially for large datasets like NQ, but potentially also others. \r\nFor us, it will in this case make the difference of using the library or keeping the old downloads of the raw dev datasets. \r\nHowever, I don't know if that fits into your plans with the library and can also understand if you don't want to support this.",
"I don't think we could force this behavior generally since the dataset script authors are free to organize the file download as they want (sometimes the mapping between split and files can be very much nontrivial) but we can add an additional configuration for Natural Question indeed as @lhoestq indicate."
] | 1,595,068,103,000 | 1,596,027,980,000 | null | NONE | null | null | null | Maybe I missed that in the docs, but is there a way to only download the dev set of natural questions (~1 GB)?
As we want to benchmark QA models on different datasets, I would like to avoid downloading the 41GB of training data.
I tried
```
dataset = nlp.load_dataset('natural_questions', split="validation", beam_runner="DirectRunner")
```
But this still triggered a big download of presumably the whole dataset. Is there any way of doing this or are splits / slicing options only available after downloading?
Thanks! | {
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https://api.github.com/repos/huggingface/datasets/issues/412 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/412/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/412/comments | https://api.github.com/repos/huggingface/datasets/issues/412/events | https://github.com/huggingface/datasets/issues/412 | 660,047,139 | MDU6SXNzdWU2NjAwNDcxMzk= | 412 | Unable to load XTREME dataset from disk | {
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"Hi @lewtun, you have to provide the full path to the downloaded file for example `/home/lewtum/..`",
"I was able to repro. Opening a PR to fix that.\r\nThanks for reporting this issue !",
"Thanks for the rapid fix @lhoestq!"
] | 1,595,066,100,000 | 1,595,319,344,000 | 1,595,319,344,000 | MEMBER | null | null | null | Hi 🤗 team!
## Description of the problem
Following the [docs](https://huggingface.co/nlp/loading_datasets.html?highlight=xtreme#manually-downloading-files) I'm trying to load the `PAN-X.fr` dataset from the [XTREME](https://github.com/google-research/xtreme) benchmark.
I have manually downloaded the `AmazonPhotos.zip` file from [here](https://www.amazon.com/clouddrive/share/d3KGCRCIYwhKJF0H3eWA26hjg2ZCRhjpEQtDL70FSBN?_encoding=UTF8&%2AVersion%2A=1&%2Aentries%2A=0&mgh=1) and am running into a `FileNotFoundError` when I point to the location of the dataset.
As far as I can tell, the problem is that `AmazonPhotos.zip` decompresses to `panx_dataset` and `load_dataset()` is not looking in the correct path:
```
# path where load_dataset is looking for fr.tar.gz
/root/.cache/huggingface/datasets/9b8c4f1578e45cb2539332c79738beb3b54afbcd842b079cabfd79e3ed6704f6/
# path where it actually exists
/root/.cache/huggingface/datasets/9b8c4f1578e45cb2539332c79738beb3b54afbcd842b079cabfd79e3ed6704f6/panx_dataset/
```
## Steps to reproduce the problem
1. Manually download the XTREME benchmark from [here](https://www.amazon.com/clouddrive/share/d3KGCRCIYwhKJF0H3eWA26hjg2ZCRhjpEQtDL70FSBN?_encoding=UTF8&%2AVersion%2A=1&%2Aentries%2A=0&mgh=1)
2. Run the following code snippet
```python
from nlp import load_dataset
# AmazonPhotos.zip is in the root of the folder
dataset = load_dataset("xtreme", "PAN-X.fr", data_dir='./')
```
3. Here is the stack trace
```
---------------------------------------------------------------------------
FileNotFoundError Traceback (most recent call last)
<ipython-input-4-26786bb5fa93> in <module>
----> 1 dataset = load_dataset("xtreme", "PAN-X.fr", data_dir='./')
/usr/local/lib/python3.6/dist-packages/nlp/load.py in load_dataset(path, name, version, data_dir, data_files, split, cache_dir, download_config, download_mode, ignore_verifications, save_infos, **config_kwargs)
522 download_mode=download_mode,
523 ignore_verifications=ignore_verifications,
--> 524 save_infos=save_infos,
525 )
526
/usr/local/lib/python3.6/dist-packages/nlp/builder.py in download_and_prepare(self, download_config, download_mode, ignore_verifications, save_infos, try_from_hf_gcs, dl_manager, **download_and_prepare_kwargs)
430 verify_infos = not save_infos and not ignore_verifications
431 self._download_and_prepare(
--> 432 dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
433 )
434 # Sync info
/usr/local/lib/python3.6/dist-packages/nlp/builder.py in _download_and_prepare(self, dl_manager, verify_infos, **prepare_split_kwargs)
464 split_dict = SplitDict(dataset_name=self.name)
465 split_generators_kwargs = self._make_split_generators_kwargs(prepare_split_kwargs)
--> 466 split_generators = self._split_generators(dl_manager, **split_generators_kwargs)
467 # Checksums verification
468 if verify_infos:
/usr/local/lib/python3.6/dist-packages/nlp/datasets/xtreme/b8c2ed3583a7a7ac60b503576dfed3271ac86757628897e945bd329c43b8a746/xtreme.py in _split_generators(self, dl_manager)
725 panx_dl_dir = dl_manager.extract(panx_path)
726 lang = self.config.name.split(".")[1]
--> 727 lang_folder = dl_manager.extract(os.path.join(panx_dl_dir, lang + ".tar.gz"))
728 return [
729 nlp.SplitGenerator(
/usr/local/lib/python3.6/dist-packages/nlp/utils/download_manager.py in extract(self, path_or_paths)
196 """
197 return map_nested(
--> 198 lambda path: cached_path(path, extract_compressed_file=True, force_extract=False), path_or_paths,
199 )
200
/usr/local/lib/python3.6/dist-packages/nlp/utils/py_utils.py in map_nested(function, data_struct, dict_only, map_tuple)
170 return tuple(mapped)
171 # Singleton
--> 172 return function(data_struct)
173
174
/usr/local/lib/python3.6/dist-packages/nlp/utils/download_manager.py in <lambda>(path)
196 """
197 return map_nested(
--> 198 lambda path: cached_path(path, extract_compressed_file=True, force_extract=False), path_or_paths,
199 )
200
/usr/local/lib/python3.6/dist-packages/nlp/utils/file_utils.py in cached_path(url_or_filename, download_config, **download_kwargs)
203 elif urlparse(url_or_filename).scheme == "":
204 # File, but it doesn't exist.
--> 205 raise FileNotFoundError("Local file {} doesn't exist".format(url_or_filename))
206 else:
207 # Something unknown
FileNotFoundError: Local file /root/.cache/huggingface/datasets/9b8c4f1578e45cb2539332c79738beb3b54afbcd842b079cabfd79e3ed6704f6/fr.tar.gz doesn't exist
```
## OS and hardware
```
- `nlp` version: 0.3.0
- Platform: Linux-4.15.0-72-generic-x86_64-with-Ubuntu-18.04-bionic
- Python version: 3.6.9
- PyTorch version (GPU?): 1.4.0 (True)
- Tensorflow version (GPU?): 2.1.0 (True)
- Using GPU in script?: <fill in>
- Using distributed or parallel set-up in script?: <fill in>
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/411 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/411/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/411/comments | https://api.github.com/repos/huggingface/datasets/issues/411/events | https://github.com/huggingface/datasets/pull/411 | 659,393,398 | MDExOlB1bGxSZXF1ZXN0NDUxMjQxOTQy | 411 | Sbf | {
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} | This PR adds the Social Bias Frames Dataset (ACL 2020) .
dataset homepage: https://homes.cs.washington.edu/~msap/social-bias-frames/ | {
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https://api.github.com/repos/huggingface/datasets/issues/410 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/410/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/410/comments | https://api.github.com/repos/huggingface/datasets/issues/410/events | https://github.com/huggingface/datasets/pull/410 | 659,242,871 | MDExOlB1bGxSZXF1ZXN0NDUxMTEzMTI3 | 410 | 20newsgroup | {
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#353 | {
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https://api.github.com/repos/huggingface/datasets/issues/409 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/409/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/409/comments | https://api.github.com/repos/huggingface/datasets/issues/409/events | https://github.com/huggingface/datasets/issues/409 | 659,128,611 | MDU6SXNzdWU2NTkxMjg2MTE= | 409 | train_test_split error: 'dict' object has no attribute 'deepcopy' | {
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"It was fixed in 2ddd18d139d3047c9c3abe96e1e7d05bb360132c.\r\nCould you pull the latest changes from master @morganmcg1 ?",
"Thanks @lhoestq, works fine now!"
] | 1,594,982,188,000 | 1,595,342,092,000 | 1,595,342,092,000 | NONE | null | null | null | `train_test_split` is giving me an error when I try and call it:
`'dict' object has no attribute 'deepcopy'`
## To reproduce
```
dataset = load_dataset('glue', 'mrpc', split='train')
dataset = dataset.train_test_split(test_size=0.2)
```
## Full Stacktrace
```
---------------------------------------------------------------------------
AttributeError Traceback (most recent call last)
<ipython-input-12-feb740dbec9a> in <module>
1 dataset = load_dataset('glue', 'mrpc', split='train')
----> 2 dataset = dataset.train_test_split(test_size=0.2)
~/anaconda3/envs/fastai2_me/lib/python3.7/site-packages/nlp/arrow_dataset.py in train_test_split(self, test_size, train_size, shuffle, seed, generator, keep_in_memory, load_from_cache_file, train_cache_file_name, test_cache_file_name, writer_batch_size)
1032 "writer_batch_size": writer_batch_size,
1033 }
-> 1034 train_kwargs = cache_kwargs.deepcopy()
1035 train_kwargs["split"] = "train"
1036 test_kwargs = cache_kwargs.deepcopy()
AttributeError: 'dict' object has no attribute 'deepcopy'
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/408 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/408/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/408/comments | https://api.github.com/repos/huggingface/datasets/issues/408/events | https://github.com/huggingface/datasets/pull/408 | 659,064,144 | MDExOlB1bGxSZXF1ZXN0NDUwOTU1MTE0 | 408 | Add tests datasets gcp | {
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These tests make sure that they're always available. It also makes sure that their scripts are in sync between S3 and the repo.
This should avoid future issues like #407 | {
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https://api.github.com/repos/huggingface/datasets/issues/407 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/407/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/407/comments | https://api.github.com/repos/huggingface/datasets/issues/407/events | https://github.com/huggingface/datasets/issues/407 | 658,672,736 | MDU6SXNzdWU2NTg2NzI3MzY= | 407 | MissingBeamOptions for Wikipedia 20200501.en | {
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"Fixed. Could you try again @mitchellgordon95 ?\r\nIt was due a file not being updated on S3.\r\n\r\nWe need to make sure all the datasets scripts get updated properly @julien-c ",
"Works for me! Thanks.",
"I found the same issue with almost any language other than English. (For English, it works). Will someone need to update the file on S3 again?",
"This is because only some languages are already preprocessed (en, de, fr, it) and stored on our google storage.\r\nWe plan to have a systematic way to preprocess more wikipedia languages in the future.\r\n\r\nFor the other languages you have to process them on your side using apache beam. That's why the lib asks for a Beam runner."
] | 1,594,943,283,000 | 1,610,451,676,000 | 1,594,995,868,000 | CONTRIBUTOR | null | null | null | There may or may not be a regression for the pre-processed Wikipedia dataset. This was working fine 10 commits ago (without having Apache Beam available):
```
nlp.load_dataset('wikipedia', "20200501.en", split='train')
```
And now, having pulled master, I get:
```
Downloading and preparing dataset wikipedia/20200501.en (download: 16.99 GiB, generated: 17.07 GiB, total: 34.06 GiB) to /home/hltcoe/mgordon/.cache/huggingface/datasets/wikipedia/20200501.en/1.0.0/76b0b2747b679bb0ee7a1621e50e5a6378477add0c662668a324a5bc07d516dd...
Traceback (most recent call last):
File "scripts/download.py", line 11, in <module>
fire.Fire(download_pretrain)
File "/home/hltcoe/mgordon/.conda/envs/huggingface/lib/python3.6/site-packages/fire/core.py", line 138, in Fire
component_trace = _Fire(component, args, parsed_flag_args, context, name)
File "/home/hltcoe/mgordon/.conda/envs/huggingface/lib/python3.6/site-packages/fire/core.py", line 468, in _Fire
target=component.__name__)
File "/home/hltcoe/mgordon/.conda/envs/huggingface/lib/python3.6/site-packages/fire/core.py", line 672, in _CallAndUpdateTrace
component = fn(*varargs, **kwargs)
File "scripts/download.py", line 6, in download_pretrain
nlp.load_dataset('wikipedia', "20200501.en", split='train')
File "/exp/mgordon/nlp/src/nlp/load.py", line 534, in load_dataset
save_infos=save_infos,
File "/exp/mgordon/nlp/src/nlp/builder.py", line 460, in download_and_prepare
dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/exp/mgordon/nlp/src/nlp/builder.py", line 870, in _download_and_prepare
"\n\t`{}`".format(usage_example)
nlp.builder.MissingBeamOptions: Trying to generate a dataset using Apache Beam, yet no Beam Runner or PipelineOptions() has been provided in `load_dataset` or in the builder arguments. For big datasets it has to run on large-scale data processing tools like Dataflow, S
park, etc. More information about Apache Beam runners at https://beam.apache.org/documentation/runners/capability-matrix/
If you really want to run it locally because you feel like the Dataset is small enough, you can use the local beam runner called `DirectRunner` (you may run out of memory).
Example of usage:
`load_dataset('wikipedia', '20200501.en', beam_runner='DirectRunner')`
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/406 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/406/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/406/comments | https://api.github.com/repos/huggingface/datasets/issues/406/events | https://github.com/huggingface/datasets/issues/406 | 658,581,764 | MDU6SXNzdWU2NTg1ODE3NjQ= | 406 | Faster Shuffling? | {
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"I think the slowness here probably come from the fact that we are copying from and to python.\r\n\r\n@lhoestq for all the `select`-based methods I think we should stay in Arrow format and update the writer so that it can accept Arrow tables or batches as well. What do you think?",
"> @lhoestq for all the `select`-based methods I think we should stay in Arrow format and update the writer so that it can accept Arrow tables or batches as well. What do you think?\r\n\r\nI just tried with `writer.write_table` with tables of 1000 elements and it's slower that the solution in #405 \r\n\r\nOn my side (select 10 000 examples):\r\n- Original implementation: 12s\r\n- Batched solution: 100ms\r\n- solution using arrow tables: 350ms\r\n\r\nI'll try with arrays and record batches to see if we can make it work.",
"I tried using `.take` from pyarrow recordbatches but it doesn't improve the speed that much:\r\n```python\r\nimport nlp\r\nimport numpy as np\r\n\r\ndset = nlp.Dataset.from_file(\"dummy_test_select.arrow\") # dummy dataset with 100000 examples like {\"a\": \"h\"*512}\r\nindices = np.random.randint(0, 100_000, 1000_000)\r\n```\r\n\r\n```python\r\n%%time\r\nbatch_size = 10_000\r\nwriter = ArrowWriter(schema=dset.schema, path=\"dummy_path\",\r\n writer_batch_size=1000, disable_nullable=False)\r\nfor i in tqdm(range(0, len(indices), batch_size)):\r\n table = pa.concat_tables(dset._data.slice(int(i), 1) for i in indices[i : min(len(indices), i + batch_size)])\r\n batch = table.to_pydict()\r\n writer.write_batch(batch)\r\nwriter.finalize()\r\n# 9.12s\r\n```\r\n\r\n\r\n```python\r\n%%time\r\nbatch_size = 10_000\r\nwriter = ArrowWriter(schema=dset.schema, path=\"dummy_path\", \r\n writer_batch_size=1000, disable_nullable=False)\r\nfor i in tqdm(range(0, len(indices), batch_size)):\r\n batch_indices = indices[i : min(len(indices), i + batch_size)]\r\n # First, extract only the indices that we need with a mask\r\n mask = [False] * len(dset)\r\n for k in batch_indices:\r\n mask[k] = True\r\n t_batch = dset._data.filter(pa.array(mask))\r\n # Second, build the list of indices for the filtered table, and taking care of duplicates\r\n rev_positions = {}\r\n duplicates = 0\r\n for i, j in enumerate(sorted(batch_indices)):\r\n if j in rev_positions:\r\n duplicates += 1\r\n else:\r\n rev_positions[j] = i - duplicates\r\n rev_map = [rev_positions[j] for j in batch_indices]\r\n # Third, use `.take` from the combined recordbatch\r\n t_combined = t_batch.combine_chunks() # load in memory\r\n recordbatch = t_combined.to_batches()[0]\r\n table = pa.Table.from_arrays(\r\n [recordbatch[c].take(pa.array(rev_map)) for c in range(len(dset._data.column_names))],\r\n schema=writer.schema\r\n )\r\n writer.write_table(table)\r\nwriter.finalize()\r\n# 3.2s\r\n```\r\n",
"Shuffling is now significantly faster thanks to #513 \r\nFeel free to play with it now :)\r\n\r\nClosing this one, but feel free to re-open if you have other questions"
] | 1,594,934,513,000 | 1,599,489,926,000 | 1,599,489,925,000 | CONTRIBUTOR | null | null | null | Consider shuffling bookcorpus:
```
dataset = nlp.load_dataset('bookcorpus', split='train')
dataset.shuffle()
```
According to tqdm, this will take around 2.5 hours on my machine to complete (even with the faster version of select from #405). I've also tried with `keep_in_memory=True` and `writer_batch_size=1000`.
But I can also just write the lines to a text file:
```
batch_size = 100000
with open('tmp.txt', 'w+') as out_f:
for i in tqdm(range(0, len(dataset), batch_size)):
batch = dataset[i:i+batch_size]['text']
print("\n".join(batch), file=out_f)
```
Which completes in a couple minutes, followed by `shuf tmp.txt > tmp2.txt` which completes in under a minute. And finally,
```
dataset = nlp.load_dataset('text', data_files='tmp2.txt')
```
Which completes in under 10 minutes. I read up on Apache Arrow this morning, and it seems like the columnar data format is not especially well-suited to shuffling rows, since moving items around requires a lot of book-keeping.
Is shuffle inherently slow, or am I just using it wrong? And if it is slow, would it make sense to try converting the data to a row-based format on disk and then shuffling? (Instead of calling select with a random permutation, as is currently done.) | {
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https://api.github.com/repos/huggingface/datasets/issues/405 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/405/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/405/comments | https://api.github.com/repos/huggingface/datasets/issues/405/events | https://github.com/huggingface/datasets/pull/405 | 658,580,192 | MDExOlB1bGxSZXF1ZXN0NDUwNTI1MTc3 | 405 | Make select() faster by batching reads | {
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} | Here's a benchmark:
```
dataset = nlp.load_dataset('bookcorpus', split='train')
start = time.time()
dataset.select(np.arange(1000), reader_batch_size=1, load_from_cache_file=False)
end = time.time()
print(f'{end - start}')
start = time.time()
dataset.select(np.arange(1000), reader_batch_size=1000, load_from_cache_file=False)
end = time.time()
print(f'{end - start}')
```
Without batching, select takes around 1.27 seconds. With batching, it takes around 0.01 seconds. The slowness was upsetting me because dataset.shuffle() was supposed to take ~27 hours for bookcorpus. Now with the fix it takes ~2.5 hours (which still is pretty slow, but I'll open a separate issue for that). | {
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https://api.github.com/repos/huggingface/datasets/issues/404 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/404/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/404/comments | https://api.github.com/repos/huggingface/datasets/issues/404/events | https://github.com/huggingface/datasets/pull/404 | 658,400,987 | MDExOlB1bGxSZXF1ZXN0NDUwMzY4Mjg4 | 404 | Add seed in metrics | {
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} | With #361 we noticed that some metrics were not deterministic.
In this PR I allow the user to specify numpy's seed when instantiating a metric with `load_metric`.
The seed is set only when `compute` is called, and reset afterwards.
Moreover when calling `compute` with the same metric instance (i.e. same experiment_id), the metric will always return the same results given the same inputs. This is the case even if the seed is was not specified by the user, as the previous seed is going to be reused.
However, instantiating twice a metric (two different experiments) without specifying a seed can create different results. | {
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https://api.github.com/repos/huggingface/datasets/issues/403 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/403/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/403/comments | https://api.github.com/repos/huggingface/datasets/issues/403/events | https://github.com/huggingface/datasets/pull/403 | 658,325,756 | MDExOlB1bGxSZXF1ZXN0NDUwMzAzNjI2 | 403 | return python objects instead of arrays by default | {
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I fixed it by using to_pydict/to_pylist instead.
Fix #387
It was mentioned in https://github.com/huggingface/transformers/issues/5729
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#336 | {
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"What does the `nlp-cli dummy_data` command returns ?",
"`test.json` -> `test` \r\nand \r\n`train.json` -> `train`\r\n\r\nas shown by the `nlp-cli dummy_data` command ;-)",
"LGTM for merge @lhoestq - I let you merge if you want to."
] | 1,594,889,699,000 | 1,596,694,580,000 | 1,596,694,579,000 | CONTRIBUTOR | null | false | {
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#336
Maybe @patrickvonplaten you can help with the dummy_data structure? it still broken | {
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#336 | {
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"Thanks!"
] | 1,594,874,278,000 | 1,594,882,188,000 | 1,594,882,177,000 | CONTRIBUTOR | null | false | {
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} | In "Formatting the dataset" part, "The two toehr modifications..." should be "The two other modifications..." ,the word "other" wrong spelled as "toehr". | {
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"Do you mind adding a link to the much more extended pages on adding and sharing a dataset in the new documentation?",
"Sure, I will do that too"
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} | This makes dset.shard() play nice with nlp.concatenate_datasets(). When I originally wrote the shard() method, I was thinking about a distributed training scenario, but https://github.com/huggingface/nlp/pull/389 also uses it for splitting the dataset for distributed preprocessing.
Usage:
```
nlp.concatenate_datasets([dset.shard(n, i, contiguous=True) for i in range(n)])
``` | {
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Fix #395 | {
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```python
import nlp
w = nlp.load_dataset("wikipedia", "20200501.en", split="train")
w.select([0])
```
This is caused by [this line](https://github.com/huggingface/nlp/blob/master/src/nlp/arrow_dataset.py#L626) for some reason, that tries to serialize the function with all the wikipedia data with it.
It's not the case with `.map` or `.filter`.
However functions that are based on `.select` like `.shuffle`, `.shard`, `.train_test_split`, `.sort` are affected.
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#378 | {
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For downloaded files, we are using the `downloads` directory to make things easier to navigate, but extracted files were still placed at the root of the cache directory. To fix that I changed the directory for extracted files to cache_dir/downloads/extracted. | {
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} | Another [PAN task](https://pan.webis.de/clef20/pan20-web/style-change-detection.html). This time about identifying when the style/author changes in documents.
- There's the possibility of adding the [PAN19](https://zenodo.org/record/3577602) and PAN18 style change detection tasks too (these are datasets whose labels are a subset of PAN20's). These would probably make more sense as separate datasets (like wmt is now)
- I've converted the integer 0,1 values to a boolean
- Using manually downloaded data again. This might be changed at some point following the discussion in https://github.com/huggingface/nlp/pull/349. | {
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] | open | false | null | [] | null | [] | 1,594,775,797,000 | 1,603,813,408,000 | null | NONE | null | null | null | WOOD score paper : https://arxiv.org/pdf/2007.06898.pdf
Abstract :
>Models that surpass human performance on several popular benchmarks display significant degradation in performance on exposure to Out of Distribution (OOD) data. Recent research has shown that models overfit to spurious biases and ‘hack’ datasets, in lieu of learning generalizable features like humans. In order to stop the inflation in model performance – and thus overestimation in AI systems’ capabilities – we propose a simple and novel evaluation metric, WOOD Score, that encourages generalization during evaluation. | {
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"Looks cool :)\r\n\r\nI feel like \r\n```python\r\nconcatenated_dataset = dataset1.concatenate(dataset2)\r\n```\r\ncould be more natural. What do you think ?\r\n\r\nAlso could you also concatenate the `nlp.Dataset._data_files` ?\r\n```python\r\nreturn cls(table, info=info, split=split, data_files=self._data_files + other_dataset._data_files)\r\n```",
"I feel like \"WikiBooks\" would be a multi task dataset that could fit in the #217 discussion.\r\nNot sure concatenate should be the solution for a multi task dataset.",
"Thanks for the suggestion! `dset1.concatenate(dset2)` does feel more natural. Although this seems to be a different \"class\" of transformation function than map() or filter(), acting on two datasets rather than on one. I would prefer the function signature treat both datasets symmetrically.\r\n\r\nPython lists have `list1 + list2` or `list1.extend(list2)`.\r\nNumPy has `np.concatenate((arr1, arr2))`.\r\nPandas has `pd.join((df1, df2))`.\r\nPyTorch has `ConcatDataset((dset1, dset2))`.\r\n\r\nGiven the symmetrical treatment and clear communication that this creates a new object, rather than a simple chaining on the first, my preference is now for `nlp.concatenate((dset1, dset2))`. This would place the function in the same API class as `nlp.load_dataset`. Does that work?",
"The multi-task discussion is interesting, thanks for pointing me to that! I'll be focusing on T5 in a few weeks, so I'm sure I'll have many opinions then :). For now, I think a simple concatenate feature is important and orthogonal to that discussion. For example, a user may want to create a custom dataset that joins Wikipedia with their own custom text.",
"> Given the symmetrical treatment and clear communication that this creates a new object, rather than a simple chaining on the first, my preference is now for `nlp.concatenate((dset1, dset2))`. This would place the function in the same API class as `nlp.load_dataset`. Does that work?\r\n\r\nYep I like this idea. Maybe `nlp.concatenate_datasets()` ?\r\n\r\n> For now, I think a simple concatenate feature is important and orthogonal to that discussion. For example, a user may want to create a custom dataset that joins Wikipedia with their own custom text.\r\n\r\nI agree :)",
"Great, just updated!"
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} | I'm constructing the "WikiBooks" dataset, which is a concatenation of Wikipedia & BookCorpus. So I implemented the `Dataset.from_concat()` method, which concatenates two datasets with the same schema.
This would also be useful if someone wants to pretrain on a large generic dataset + their own custom dataset. Not in love with the method name, so would love to hear suggestions.
Usage:
```python
from nlp import Dataset, load_dataset
data1, data2 = {"id": [0, 1, 2]}, {"id": [3, 4, 5]}
dset1, dset2 = Dataset.from_dict(data1), Dataset.from_dict(data2)
dset_concat = Dataset.from_concat([dset1, dset2])
print(dset_concat)
# Dataset(schema: {'id': 'int64'}, num_rows: 6)
``` | {
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"By the way, the reason this is an issue for me is because I want to be able to \"save\" changes made to a dataset by writing something to disk. In this case, I would like to pre-process my dataset once, and then train multiple models on the dataset later without having to re-process the data. \r\n\r\nIs pickling/unpickling the Dataset object the \"sanctioned\" way of doing this? Or is there a better way that I'm missing?",
"I've had success with saving datasets to disk via:\r\n\r\n```python\r\ncache_file = \"/my/dset.cache\"\r\ndset = dset.map(whatever, cache_file_name=cache_file)\r\n# then, later\r\ndset = nlp.Dataset.from_file(cache_file)\r\n```\r\n\r\nThis restores the dataset with all the attributes I need.",
"Thanks @jarednielsen, that makes sense. I'm a little wary of messing with the cache files, since I still don't really understand what's going on under the hood with Apache Arrow. \r\n\r\nRelated question: I'd like to do parallel pre-processing of the dataset. I know how to break the dataset up via sharding, but is there any way to combine the shards back together again once the processing is done? Right now I'm probably just going to iterate over each shard, write the contexts to a txt file, and then cat the txt files, but it feels like there ought to be a nicer way to concatenate datasets.",
"Haha, opened a PR for that functionality about an hour ago: https://github.com/huggingface/nlp/pull/390. Glad we're on the same page :)",
"Datasets are not supposed to be pickled as pickle tries to put all the dataset in memory if I'm not wrong (and write all the data on disk).\r\nThe concatenate method however is a very cool feature, looking forward to having it merged :)",
"Ah, yes, you are correct. The pickle file contains the whole dataset, not just the cache names, which is not quite what I expected.\r\n\r\nI tried adding a warning when pickling a Dataset, to prevent others like me from trying it. Interestingly, however, the warning is raised whenever any function on the dataset is called (select, shard, etc.). \r\n\r\n```\r\nimport nlp\r\nwiki = nlp.load_dataset('wikipedia', split='train')\r\nwiki = wiki.shard(16, 0) # Triggers pickling of dataset\r\n```\r\n\r\nI believe this is because [this line](https://github.com/huggingface/nlp/blob/master/src/nlp/arrow_dataset.py#L626), which gets the function signature, is actually pickling the whole dataset (and thereby serializing all the data to text). I checked by printing that string, and sure enough it was full of Wikipedia articles.\r\n\r\nI don't think the whole pickling thing is worth the effort, so I'll close the PR. But I did want to mention this serialization behavior in case it's not intended.",
"Thanks for reporting. Indeed this line shouldn't serialize the data but only the function itself.\r\n",
"Keeping this open because I would like to keep brainstorming a bit on this.\r\n\r\nOne note on this is that we should have a clean serialization workflow, probably one that could serialize to a few formats (arrow, parquet and tfrecords come to mind).",
"This PR could be useful. My specific use case is `multiprocessing.Pool` for parallel preprocessing (because of the Python tokenization bottleneck at https://github.com/huggingface/transformers/issues/5729). I shard a large dataset, run map on each shard within a multiprocessing pool, and then concatenate them back together. This is only possible if a dataset can be pickled, otherwise the logic is much more complex. There's no reason to make it un-picklable, even if it's not the recommended usage.\r\n\r\n```python\r\nimport nlp\r\nimport multiprocessing\r\n\r\ndef func(ex):\r\n return {\"text\": \"Prefix: \" + ex[\"text\"]}\r\n\r\ndef map_helper(dset):\r\n return dset.map(func)\r\n\r\nn_shards = 16\r\ndset = nlp.load_dataset(\"wikitext-2-raw-v1\", split=\"train\")\r\nwith multiprocessing.Pool(processes=n_shards) as pool:\r\n shards = pool.map(map_helper, [dset.shard(n_shards, i, contiguous=True) for i in range(n_shards)])\r\ndset = nlp.concatenate_datasets(shards)\r\n```\r\n",
"Yes I agree.\r\n#423 just got merged and should allow serialization of `SplitDict`. Could you try it and see if it'ok on your side now ?",
"Closing this, assuming it was fixed in #423."
] | 1,594,763,619,000 | 1,596,551,890,000 | 1,596,551,890,000 | CONTRIBUTOR | null | false | {
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} | It would be nice to pickle and unpickle Datasets, as done in [this tutorial](https://github.com/patil-suraj/exploring-T5/blob/master/T5_on_TPU.ipynb). Example:
```
wiki = nlp.load_dataset('wikipedia', split='train')
def sentencize(examples):
...
wiki = wiki.map(sentencize, batched=True)
torch.save(wiki, 'sentencized_wiki_dataset.pt')
```
However, upon unpickling the dataset via torch.load(...), this error is raised:
```
ValueError("Cannot add elem. Use .add() instead.")
```
On line [492 of splits.py](https://github.com/huggingface/nlp/blob/master/src/nlp/splits.py#L492). This is because SplitDict subclasses dict, and pickle treats [dicts specially](https://github.com/huggingface/nlp/blob/master/src/nlp/splits.py#L492). Pickle expects access to `dict.__setitem__`, but this is disallowed by the class.
The workaround is to provide an explicit interface for pickle to call when pickling and unpickling, thereby avoiding the use of `__setitem__`.
Testing:
- Manually pickled and unpickled a modified wikipedia dataset.
- Ran `make style`
I would be happy to run any other tests, but I couldn't find any in the contributing guidelines. | {
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"similar slow download speed here for nlp.load_dataset('wmt14', 'fr-en')\r\n`\r\nDownloading: 100%|██████████████████████████████████████████████████████████| 658M/658M [1:00:42<00:00, 181kB/s]\r\nDownloading: 100%|██████████████████████████████████████████████████████████| 918M/918M [1:39:38<00:00, 154kB/s]\r\nDownloading: 2%|▉ | 40.9M/2.37G [04:48<5:03:06, 128kB/s]\r\n`\r\nCould we just download a specific subdataset in 'wmt14', such as 'newstest14'? ",
"> The code runs but the download speed is extremely slow, the same behaviour is not observed on wmt16 and wmt18\r\n\r\nThe original source for the files may provide slow download speeds.\r\nWe can probably host these files ourselves.\r\n\r\n> When trying to download wmt17 zh-en, I got the following error:\r\n> ConnectionError: Couldn't reach https://storage.googleapis.com/tfdataset-data/downloadataset/uncorpus/UNv1.0.en-zh.tar.gz\r\n\r\nLooks like the file`UNv1.0.en-zh.tar.gz` is missing, or the url changed. We need to fix that\r\n\r\n> Could we just download a specific subdataset in 'wmt14', such as 'newstest14'?\r\n\r\nRight now I don't think it's possible. Maybe @patrickvonplaten knows more about it\r\n",
"Yeah, the download speed is sadly always extremely slow :-/. \r\nI will try to check out the `wmt17 zh-en` bug :-) ",
"Maybe this can be used - https://stuncorpusprod.blob.core.windows.net/corpusfiles/UNv1.0.en-zh.tar.gz.00 "
] | 1,594,741,001,000 | 1,596,639,392,000 | null | NONE | null | null | null | 1. I try downloading `wmt14`, `wmt15`, `wmt17`, `wmt19` with the following code:
```
nlp.load_dataset('wmt14','de-en')
nlp.load_dataset('wmt15','de-en')
nlp.load_dataset('wmt17','de-en')
nlp.load_dataset('wmt19','de-en')
```
The code runs but the download speed is **extremely slow**, the same behaviour is not observed on `wmt16` and `wmt18`
2. When trying to download `wmt17 zh-en`, I got the following error:
> ConnectionError: Couldn't reach https://storage.googleapis.com/tfdataset-data/downloadataset/uncorpus/UNv1.0.en-zh.tar.gz | {
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https://api.github.com/repos/huggingface/datasets/issues/387 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/387/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/387/comments | https://api.github.com/repos/huggingface/datasets/issues/387/events | https://github.com/huggingface/datasets/issues/387 | 656,361,357 | MDU6SXNzdWU2NTYzNjEzNTc= | 387 | Conversion through to_pandas output numpy arrays for lists instead of python objects | {
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"To convert from arrow type we have three options: to_numpy, to_pandas and to_pydict/to_pylist.\r\n\r\n- to_numpy and to_pandas return numpy arrays instead of lists but are very fast.\r\n- to_pydict/to_pylist can be 100x slower and become the bottleneck for reading data, but at least they return lists.\r\n\r\nMaybe we can have to_pydict/to_pylist as the default and use to_numpy or to_pandas when the format (set by `set_format`) is 'numpy' or 'pandas'"
] | 1,594,707,841,000 | 1,594,985,820,000 | 1,594,985,820,000 | MEMBER | null | null | null | In a related question, the conversion through to_pandas output numpy arrays for the lists instead of python objects.
Here is an example:
```python
>>> dataset._data.slice(key, 1).to_pandas().to_dict("list")
{'sentence1': ['Amrozi accused his brother , whom he called " the witness " , of deliberately distorting his evidence .'], 'sentence2': ['Referring to him as only " the witness " , Amrozi accused his brother of deliberately distorting his evidence .'], 'label': [1], 'idx': [0], 'input_ids': [array([ 101, 7277, 2180, 5303, 4806, 1117, 1711, 117, 2292,
1119, 1270, 107, 1103, 7737, 107, 117, 1104, 9938,
4267, 12223, 21811, 1117, 2554, 119, 102])], 'token_type_ids': [array([0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
0, 0, 0])], 'attention_mask': [array([1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,
1, 1, 1])]}
>>> type(dataset._data.slice(key, 1).to_pandas().to_dict("list")['input_ids'][0])
<class 'numpy.ndarray'>
>>> dataset._data.slice(key, 1).to_pydict()
{'sentence1': ['Amrozi accused his brother , whom he called " the witness " , of deliberately distorting his evidence .'], 'sentence2': ['Referring to him as only " the witness " , Amrozi accused his brother of deliberately distorting his evidence .'], 'label': [1], 'idx': [0], 'input_ids': [[101, 7277, 2180, 5303, 4806, 1117, 1711, 117, 2292, 1119, 1270, 107, 1103, 7737, 107, 117, 1104, 9938, 4267, 12223, 21811, 1117, 2554, 119, 102]], 'token_type_ids': [[0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]], 'attention_mask': [[1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]]}
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/386 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/386/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/386/comments | https://api.github.com/repos/huggingface/datasets/issues/386/events | https://github.com/huggingface/datasets/pull/386 | 655,839,067 | MDExOlB1bGxSZXF1ZXN0NDQ4MjQ1NDI4 | 386 | Update dataset loading and features - Add TREC dataset | {
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"I just copied the files that are on google storage to follow the new `_relative_data_dir ` format. It should be good to merge now :)\r\n\r\nWell actually it seems there are some merge conflicts to fix first"
] | 1,594,645,818,000 | 1,594,887,478,000 | 1,594,887,478,000 | MEMBER | null | false | {
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- add a template for a new dataset script
- update the caching structure so that the path to the cached data files is also a function of the dataset loading script hash. This way when you update a loading script the data will be automatically updated instead of falling back to the previous version (which is usually a outdated). This makes it in particular easier to iterate when writing a new dataset loading script.
- fix a bug in the `ClassLabel` feature and make it more flexible so that its methods `str2int` and `int2str` can also accept list, numpy arrays and PyTorch/TensorFlow tensors.
- add the TREC-6 dataset | {
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https://api.github.com/repos/huggingface/datasets/issues/385 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/385/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/385/comments | https://api.github.com/repos/huggingface/datasets/issues/385/events | https://github.com/huggingface/datasets/pull/385 | 655,663,997 | MDExOlB1bGxSZXF1ZXN0NDQ4MTAzMjY5 | 385 | Remove unnecessary nested dict | {
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"We can probably scan the dataset scripts with a regexpr to try to identify this pattern cc @patrickvonplaten maybe",
"@mariamabarham This script should work. I tested it for a couple of datasets. There might be exceptions where the script breaks - did not test everything.\r\n\r\n```python\r\n#!/usr/bin/env python3\r\n\r\nfrom nlp import prepare_module, DownloadConfig, import_main_class, hf_api\r\nimport tempfile\r\n\r\n\r\ndef scan_for_nested_unnecessary_dict(dataset_name):\r\n\r\n def load_builder_class(dataset_name):\r\n module_path = prepare_module(dataset_name, download_config=DownloadConfig(force_download=True))\r\n return import_main_class(module_path)\r\n\r\n def load_configs(dataset_name):\r\n builder_cls = load_builder_class(dataset_name)\r\n if len(builder_cls.BUILDER_CONFIGS) == 0:\r\n return [None]\r\n return builder_cls.BUILDER_CONFIGS\r\n\r\n def scan_features_for_nested_dict(features):\r\n is_sequence = False\r\n if hasattr(features, \"_type\"):\r\n if features._type != 'Sequence':\r\n return False\r\n else:\r\n is_sequence = True\r\n features = features.feature\r\n\r\n if isinstance(features, list):\r\n for value in features:\r\n if scan_features_for_nested_dict(value):\r\n return True\r\n return False\r\n\r\n elif isinstance(features, dict):\r\n for key, value in features.items():\r\n if is_sequence and len(features.keys()) == 1 and hasattr(features[key], \"_type\") and features[key]._type != \"Sequence\":\r\n return True\r\n if scan_features_for_nested_dict(value):\r\n return True\r\n return False\r\n elif hasattr(features, \"_type\"):\r\n return False\r\n else:\r\n raise ValueError(f\"{features} should be either a list, a dict or a feature\")\r\n\r\n configs = load_configs(dataset_name)\r\n\r\n for config in configs:\r\n with tempfile.TemporaryDirectory() as processed_temp_dir:\r\n # create config and dataset\r\n dataset_builder_cls = load_builder_class(dataset_name)\r\n name = config.name if config is not None else None\r\n dataset_builder = dataset_builder_cls(name=name, cache_dir=processed_temp_dir)\r\n\r\n is_nested_dict_in_dataset = scan_features_for_nested_dict(dataset_builder._info().features)\r\n if is_nested_dict_in_dataset:\r\n print(f\"{dataset_name} with {name} needs refactoring\")\r\n\r\n\r\nif __name__ == \"__main__\":\r\n scan_for_nested_unnecessary_dict(\"race\") # prints True\r\n scan_for_nested_unnecessary_dict(\"mlqa\") # prints True\r\n scan_for_nested_unnecessary_dict(\"squad\") # prints Nothing\r\n\r\n # ran the following lines for 1min and seems to work -> didn't check for all datasets though\r\n# api = hf_api.HfApi()\r\n# all_datasets = [x.id for x in api.dataset_list(with_community_datasets=False)]\r\n# for dataset in all_datasets:\r\n# scan_for_nested_unnecessary_dict(dataset)\r\n```",
"> @mariamabarham This script should work. I tested it for a couple of datasets. There might be exceptions where the script breaks - did not test everything.\r\n> \r\n> ```python\r\n> #!/usr/bin/env python3\r\n> \r\n> from nlp import prepare_module, DownloadConfig, import_main_class, hf_api\r\n> import tempfile\r\n> \r\n> \r\n> def scan_for_nested_unnecessary_dict(dataset_name):\r\n> \r\n> def load_builder_class(dataset_name):\r\n> module_path = prepare_module(dataset_name, download_config=DownloadConfig(force_download=True))\r\n> return import_main_class(module_path)\r\n> \r\n> def load_configs(dataset_name):\r\n> builder_cls = load_builder_class(dataset_name)\r\n> if len(builder_cls.BUILDER_CONFIGS) == 0:\r\n> return [None]\r\n> return builder_cls.BUILDER_CONFIGS\r\n> \r\n> def scan_features_for_nested_dict(features):\r\n> is_sequence = False\r\n> if hasattr(features, \"_type\"):\r\n> if features._type != 'Sequence':\r\n> return False\r\n> else:\r\n> is_sequence = True\r\n> features = features.feature\r\n> \r\n> if isinstance(features, list):\r\n> for value in features:\r\n> if scan_features_for_nested_dict(value):\r\n> return True\r\n> return False\r\n> \r\n> elif isinstance(features, dict):\r\n> for key, value in features.items():\r\n> if is_sequence and len(features.keys()) == 1 and hasattr(features[key], \"_type\") and features[key]._type != \"Sequence\":\r\n> return True\r\n> if scan_features_for_nested_dict(value):\r\n> return True\r\n> return False\r\n> else:\r\n> raise ValueError(f\"{features} should be either a list of a dict\")\r\n> \r\n> configs = load_configs(dataset_name)\r\n> \r\n> for config in configs:\r\n> with tempfile.TemporaryDirectory() as processed_temp_dir:\r\n> # create config and dataset\r\n> dataset_builder_cls = load_builder_class(dataset_name)\r\n> name = config.name if config is not None else None\r\n> dataset_builder = dataset_builder_cls(name=name, cache_dir=processed_temp_dir)\r\n> \r\n> is_nested_dict_in_dataset = scan_features_for_nested_dict(dataset_builder._info().features)\r\n> if is_nested_dict_in_dataset:\r\n> print(f\"{dataset_name} with {name} needs refactoring\")\r\n> \r\n> \r\n> if __name__ == \"__main__\":\r\n> scan_for_nested_unnecessary_dict(\"race\") # prints True\r\n> scan_for_nested_unnecessary_dict(\"mlqa\") # prints True\r\n> scan_for_nested_unnecessary_dict(\"squad\") # prints Nothing\r\n> \r\n> # ran the following lines for 1min and seems to work -> didn't check for all datasets though\r\n> # api = hf_api.HfApi()\r\n> # all_datasets = [x.id for x in api.dataset_list(with_community_datasets=False)]\r\n> # for dataset in all_datasets:\r\n> # scan_for_nested_unnecessary_dict(dataset)\r\n> ```\r\n\r\nGreat, I will try it",
"I'm not sure the work on this PR was finished @lhoestq cc @mariamabarham @patrickvonplaten ",
"Sorry for that, apparently there are other datasets that could have unnecessary nested dicts.\r\nWe can have another PR to scan and fix the other datasets.\r\n"
] | 1,594,629,983,000 | 1,594,812,458,000 | 1,594,807,433,000 | CONTRIBUTOR | null | false | {
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} | This PR is removing unnecessary nested dictionary used in some datasets. For now the following datasets are updated:
- MLQA
- RACE
Will be adding more if necessary.
#378 | {
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"I am checking the details of the CI log for the failed test, but I don't see how the error relates to the code I added; the error is coming from a config builder different than the `LinceConfig`, and it crashes when `self.config.data_files` because is self.config is None. I would appreciate if someone could help me find out where I could have messed things up :)\r\n\r\nAlso, the real and dummy data tests passed before committing and pushing my changes.\r\n\r\nThanks a lot in advance!\r\n\r\n```\r\n=================================== FAILURES ===================================\r\n____________________ AWSDatasetTest.test_load_dataset_text _____________________\r\n\r\nself = <tests.test_dataset_common.AWSDatasetTest testMethod=test_load_dataset_text>\r\ndataset_name = 'text'\r\n\r\n def test_load_dataset(self, dataset_name):\r\n configs = self.dataset_tester.load_all_configs(dataset_name)[:1]\r\n> self.dataset_tester.check_load_dataset(dataset_name, configs)\r\n\r\ntests/test_dataset_common.py:243: \r\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \r\ntests/test_dataset_common.py:137: in check_load_dataset\r\n try_from_hf_gcs=False,\r\n../.local/lib/python3.6/site-packages/nlp/builder.py:432: in download_and_prepare\r\n dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs\r\n../.local/lib/python3.6/site-packages/nlp/builder.py:466: in _download_and_prepare\r\n split_generators = self._split_generators(dl_manager, **split_generators_kwargs)\r\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \r\n\r\nself = <nlp.datasets.text.bf5568367c6707640e5601a44ed0af98f40a8483db81a7db99b85fab6606fc8b.text.Text object at 0x7efa744ffb70>\r\ndl_manager = <nlp.utils.mock_download_manager.MockDownloadManager object at 0x7efb304c52b0>\r\n\r\n def _split_generators(self, dl_manager):\r\n \"\"\" The `datafiles` kwarg in load_dataset() can be a str, List[str], Dict[str,str], or Dict[str,List[str]].\r\n \r\n If str or List[str], then the dataset returns only the 'train' split.\r\n If dict, then keys should be from the `nlp.Split` enum.\r\n \"\"\"\r\n if isinstance(self.config.data_files, (str, list, tuple)):\r\n # Handle case with only one split\r\n files = self.config.data_files\r\n if isinstance(files, str):\r\n files = [files]\r\n return [nlp.SplitGenerator(name=nlp.Split.TRAIN, gen_kwargs={\"files\": files})]\r\n else:\r\n # Handle case with several splits and a dict mapping\r\n splits = []\r\n for split_name in [nlp.Split.TRAIN, nlp.Split.VALIDATION, nlp.Split.TEST]:\r\n> if split_name in self.config.data_files:\r\nE TypeError: argument of type 'NoneType' is not iterable\r\n\r\n../.local/lib/python3.6/site-packages/nlp/datasets/text/bf5568367c6707640e5601a44ed0af98f40a8483db81a7db99b85fab6606fc8b/text.py:24: TypeError\r\n=============================== warnings summary ===============================\r\n... \r\n=========================== short test summary info ============================\r\nFAILED tests/test_dataset_common.py::AWSDatasetTest::test_load_dataset_text\r\n====== 1 failed, 963 passed, 532 skipped, 5 warnings in 166.33s (0:02:46) ======\r\n\r\nExited with code exit status 1\r\n```",
"@lhoestq Hi Quentin, I was wondering if you could give some feedback on this error from the `run_dataset_script_tests` script. It seems that's coming from a different config builder than the one I added, so I am not sure why this error would occur. Thanks in advance!",
"Awesome! Thank you for all your comments! 👌 I will update the PR in a bit with all the required changes 🙂 \r\n\r\nLet me just provide a bit of context for my changes:\r\n\r\nI was referring to the GLUE, XTREME and WNUT_17 dataset scripts to build mine (not sure if the new documentation was available last week). This is where I took the naming convention for the citation and description variables. Also, these scripts didn't have the `BUILDER_CONFIG_CLASS = LinceConfig` line so I commented this out thinking I didn't need that; I tried this line in my attempts to make the real and dummy data tests pass but it was not helping. \r\n\r\nThe problem I was facing was that the tests were passing a default `BuilderConfig` (i.e., `self.config.name` property was set to `'default'` and my custom properties were not available). This means, for example, that within the `def _info(...)` method, I was not able to access the specific fields of my `LinceConfig` class (which is why I have now a global variable `_LINCE_CITATIONS`, to detach the individual citations from the corresponding LinceConfig objects, as well as I am constructing manually the feature infos). This default `BuilderConfig` is why I added the `if not isinstance(self.config, LinceConfig): return []` statement. Otherwise, accessing custom properties like `self.config.colnames` was failing the test because such properties did not exist in the default config (i.e., it was not a `LinceConfig`).\r\n\r\nI will update the PR and see if these problems happen in the CI tests.\r\n\r\nThanks again for the follow-up! @lhoestq ",
"Ok I see !\r\n\r\nTo give you more details: the line `BUILDER_CONFIG_CLASS = LinceConfig` tells the tests how to instantiate a config for this dataset. Therefore if you have this line you should have all the fields of your config available.\r\n\r\nTo fix the errors you get you'll have to, first, have the `BUILDER_CONFIG_CLASS = LinceConfig` line, and second, add default values for the parameters of your config (or the tests functions will be unable to instantiate it by calling `LinceConfig()`.\r\n\r\nAn example of dataset with a custom config with additional filed like this one is [biomrc](https://github.com/huggingface/nlp/blob/master/datasets/biomrc/biomrc.py).\r\nFeel free to give a look at it if you want.",
"Thanks for the reference!\r\n\r\nI just updated the PR with the suggested changes. It seems the CI failed on the same test you said we could ignore, so I guess it's okay :) \r\n\r\nPlease let me know if there is something else I may need to change."
] | 1,594,506,920,000 | 1,594,916,386,000 | 1,594,916,386,000 | CONTRIBUTOR | null | false | {
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} | Hi,
First of all, this library is really cool! Thanks for putting all of this together!
This PR contains the [Linguistic Code-switching Evaluation (LinCE) benchmark](https://ritual.uh.edu/lince). As described in the official website (FAQ):
> 1. Why do we need LinCE?
>LinCE brings 10 code-switching datasets together for 4 tasks and 4 language pairs with 5 leaderboards in a single evaluation platform. We examined each dataset and fixed major issues on the partitions (or even define official partitions) with a comprehensive stratification method (see our paper for more details).
>Besides, we believe that online benchmarks like LinCE bring steady research progress and allow to compare state-of-the-art models at the pace of the progress in NLP. We expect to benefit greatly the code-switching community with this benchmark.
The data comes from social media and here's the summary table of tasks per language pair:
| Language Pairs | LID | POS | NER | SA |
|----------------------------------------|-----|-----|-----|----|
| Spanish-English | ✅ | ✅ | ✅ | ✅ |
| Hindi-English | ✅ | ✅ | ✅ | |
| Modern Standard Arabic-Egyptian Arabic | ✅ | | ✅ | |
| Nepali-English | ✅ | | | |
The tasks are as follows:
* LID: token-level language identification
* POS: part-of-speech tagging
* NER: named entity recognition
* SA: sentiment analysis
With the exception of MSA-EA, the rest of the datasets contain token-level LID labels.
## Usage
For Spanish-English LID, we can load the data as follows:
```
import nlp
data = nlp.load_dataset('./datasets/lince/lince.py', 'lid_spaeng')
for split in data:
print(data[split])
```
Here's the output:
```
Dataset(schema: {'idx': 'int32', 'tokens': 'list<item: string>', 'lid': 'list<item: string>'}, num_rows: 21030)
Dataset(schema: {'idx': 'int32', 'tokens': 'list<item: string>', 'lid': 'list<item: string>'}, num_rows: 3332)
Dataset(schema: {'idx': 'int32', 'tokens': 'list<item: string>', 'lid': 'list<item: string>'}, num_rows: 8289)
```
Here's the list of shortcut names for every dataset available in LinCE:
* `lid_spaeng`
* `lid_hineng`
* `lid_nepeng`
* `lid_msaea`
* `pos_spaeng`
* `pos_hineng`
* `ner_spaeng`
* `ner_hineng`
* `ner_msaea`
* `sa_spaeng`
All the numbers match with Table 3 in the LinCE [paper](https://www.aclweb.org/anthology/2020.lrec-1.223.pdf). Also, note that the MSA-EA datasets use the Persian script while the other datasets use the Roman script.
## Features
Here is how the features look in the case of language identification (LID) tasks:
| LID Feature | Type | Description |
|----------------------|---------------|-------------------------------------------|
| `idx` | `int` | Dataset index of current sentence |
| `tokens` | `list<str>` | List of tokens (string) of a sentence |
| `lid` | `list<str>` | List of LID labels (string) of a sentence |
For part-of-speech (POS) tagging:
| POS Feature | Type | Description |
|----------------------|---------------|-------------------------------------------|
| `idx` | `int` | Dataset index of current sentence |
| `tokens` | `list<str>` | List of tokens (string) of a sentence |
| `lid` | `list<str>` | List of LID labels (string) of a sentence |
| `pos` | `list<str>` | List of POS tags (string) of a sentence |
For named entity recognition (NER):
| NER Feature | Type | Description |
|----------------------|---------------|-------------------------------------------|
| `idx` | `int` | Dataset index of current sentence |
| `tokens` | `list<str>` | List of tokens (string) of a sentence |
| `lid` | `list<str>` | List of LID labels (string) of a sentence |
| `ner` | `list<str>` | List of NER labels (string) of a sentence |
**NOTE**: the MSA-EA NER dataset does not contain the `lid` feature.
For sentiment analysis (SA):
| SA Feature | Type | Description |
|---------------------|-------------|-------------------------------------------|
| `idx` | `int` | Dataset index of current sentence |
| `tokens` | `list<str>` | List of tokens (string) of a sentence |
| `lid` | `list<str>` | List of LID labels (string) of a sentence |
| `sa` | `str` | Sentiment label (string) of a sentence |
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https://api.github.com/repos/huggingface/datasets/issues/378 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/378/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/378/comments | https://api.github.com/repos/huggingface/datasets/issues/378/events | https://github.com/huggingface/datasets/issues/378 | 655,226,316 | MDU6SXNzdWU2NTUyMjYzMTY= | 378 | [dataset] Structure of MLQA seems unecessary nested | {
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"Same for the RACE dataset: https://github.com/huggingface/nlp/blob/master/datasets/race/race.py\r\n\r\nShould we scan all the datasets to remove this pattern of un-necessary nesting?",
"You're right, I think we don't need to use the nested dictionary. \r\n"
] | 1,594,480,568,000 | 1,594,829,840,000 | 1,594,829,840,000 | MEMBER | null | null | null | The features of the MLQA dataset comprise several nested dictionaries with a single element inside (for `questions` and `ids`): https://github.com/huggingface/nlp/blob/master/datasets/mlqa/mlqa.py#L90-L97
Should we keep this @mariamabarham @patrickvonplaten? Was this added for compatibility with tfds?
```python
features=nlp.Features(
{
"context": nlp.Value("string"),
"questions": nlp.features.Sequence({"question": nlp.Value("string")}),
"answers": nlp.features.Sequence(
{"text": nlp.Value("string"), "answer_start": nlp.Value("int32"),}
),
"ids": nlp.features.Sequence({"idx": nlp.Value("string")})
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/377 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/377/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/377/comments | https://api.github.com/repos/huggingface/datasets/issues/377/events | https://github.com/huggingface/datasets/issues/377 | 655,215,790 | MDU6SXNzdWU2NTUyMTU3OTA= | 377 | Iyy!!! | {
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https://api.github.com/repos/huggingface/datasets/issues/376 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/376/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/376/comments | https://api.github.com/repos/huggingface/datasets/issues/376/events | https://github.com/huggingface/datasets/issues/376 | 655,047,826 | MDU6SXNzdWU2NTUwNDc4MjY= | 376 | to_pandas conversion doesn't always work | {
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"**Edit**: other topic previously in this message moved to a new issue: https://github.com/huggingface/nlp/issues/387",
"Could you try to update pyarrow to >=0.17.0 ? It should fix the `to_pandas` bug\r\n\r\nAlso I'm not sure that structures like list<struct> are fully supported in the lib (none of the datasets use that).\r\nIt can cause issues when using dataset transforms like `filter` for example"
] | 1,594,416,811,000 | 1,595,239,845,000 | null | MEMBER | null | null | null | For some complex nested types, the conversion from Arrow to python dict through pandas doesn't seem to be possible.
Here is an example using the official SQUAD v2 JSON file.
This example was found while investigating #373.
```python
>>> squad = load_dataset('json', data_files={nlp.Split.TRAIN: ["./train-v2.0.json"]}, download_mode=nlp.GenerateMode.FORCE_REDOWNLOAD, version="1.0.0", field='data')
>>> squad['train']
Dataset(schema: {'title': 'string', 'paragraphs': 'list<item: struct<qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>, context: string>>'}, num_rows: 442)
>>> squad['train'][0]
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/Users/thomwolf/Documents/GitHub/datasets/src/nlp/arrow_dataset.py", line 589, in __getitem__
format_kwargs=self._format_kwargs,
File "/Users/thomwolf/Documents/GitHub/datasets/src/nlp/arrow_dataset.py", line 529, in _getitem
outputs = self._unnest(self._data.slice(key, 1).to_pandas().to_dict("list"))
File "pyarrow/array.pxi", line 559, in pyarrow.lib._PandasConvertible.to_pandas
File "pyarrow/table.pxi", line 1367, in pyarrow.lib.Table._to_pandas
File "/Users/thomwolf/miniconda2/envs/datasets/lib/python3.7/site-packages/pyarrow/pandas_compat.py", line 766, in table_to_blockmanager
blocks = _table_to_blocks(options, table, categories, ext_columns_dtypes)
File "/Users/thomwolf/miniconda2/envs/datasets/lib/python3.7/site-packages/pyarrow/pandas_compat.py", line 1101, in _table_to_blocks
list(extension_columns.keys()))
File "pyarrow/table.pxi", line 881, in pyarrow.lib.table_to_blocks
File "pyarrow/error.pxi", line 105, in pyarrow.lib.check_status
pyarrow.lib.ArrowNotImplementedError: Not implemented type for Arrow list to pandas: struct<qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>, context: string>
```
cc @lhoestq would we have a way to detect this from the schema maybe?
Here is the schema for this pretty complex JSON:
```python
>>> squad['train'].schema
title: string
paragraphs: list<item: struct<qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>, context: string>>
child 0, item: struct<qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>, context: string>
child 0, qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>
child 0, item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>
child 0, question: string
child 1, id: string
child 2, answers: list<item: struct<text: string, answer_start: int64>>
child 0, item: struct<text: string, answer_start: int64>
child 0, text: string
child 1, answer_start: int64
child 3, is_impossible: bool
child 4, plausible_answers: list<item: struct<text: string, answer_start: int64>>
child 0, item: struct<text: string, answer_start: int64>
child 0, text: string
child 1, answer_start: int64
child 1, context: string
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/375 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/375/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/375/comments | https://api.github.com/repos/huggingface/datasets/issues/375/events | https://github.com/huggingface/datasets/issues/375 | 655,023,307 | MDU6SXNzdWU2NTUwMjMzMDc= | 375 | TypeError when computing bertscore | {
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} | [] | open | false | null | [] | null | [
"I am not able to reproduce this issue on my side.\r\nCould you give us more details about the inputs you used ?\r\n\r\nI do get another error though:\r\n```\r\n~/.virtualenvs/hf-datasets/lib/python3.7/site-packages/bert_score/utils.py in bert_cos_score_idf(model, refs, hyps, tokenizer, idf_dict, verbose, batch_size, device, all_layers)\r\n 371 return sorted(list(set(l)), key=lambda x: len(x.split(\" \")))\r\n 372 \r\n--> 373 sentences = dedup_and_sort(refs + hyps)\r\n 374 embs = []\r\n 375 iter_range = range(0, len(sentences), batch_size)\r\n\r\nValueError: operands could not be broadcast together with shapes (0,) (2,)\r\n```\r\nThat's because it gets numpy arrays as input and not lists. See #387 ",
"The other issue was fixed by #403 \r\n\r\nDo you still get this issue @willywsm1013 ?\r\n"
] | 1,594,413,464,000 | 1,599,490,212,000 | null | NONE | null | null | null | Hi,
I installed nlp 0.3.0 via pip, and my python version is 3.7.
When I tried to compute bertscore with the code:
```
import nlp
bertscore = nlp.load_metric('bertscore')
# load hyps and refs
...
print (bertscore.compute(hyps, refs, lang='en'))
```
I got the following error.
```
Traceback (most recent call last):
File "bert_score_evaluate.py", line 16, in <module>
print (bertscore.compute(hyps, refs, lang='en'))
File "/home/willywsm/anaconda3/envs/torcher/lib/python3.7/site-packages/nlp/metric.py", line 200, in compute
output = self._compute(predictions=predictions, references=references, **metrics_kwargs)
File "/home/willywsm/anaconda3/envs/torcher/lib/python3.7/site-packages/nlp/metrics/bertscore/fb176889831bf0ce995ed197edc94b2e9a83f647a869bb8c9477dbb2d04d0f08/bertscore.py", line 105, in _compute
hashcode = bert_score.utils.get_hash(model_type, num_layers, idf, rescale_with_baseline)
TypeError: get_hash() takes 3 positional arguments but 4 were given
```
It seems like there is something wrong with get_hash() function? | {
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https://api.github.com/repos/huggingface/datasets/issues/374 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/374/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/374/comments | https://api.github.com/repos/huggingface/datasets/issues/374/events | https://github.com/huggingface/datasets/pull/374 | 654,895,066 | MDExOlB1bGxSZXF1ZXN0NDQ3NTMxMzUy | 374 | Add dataset post processing for faiss indexes | {
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"I changed the `wiki_dpr` script to ignore the last 24 examples for now. Hopefully we'll have the full version soon.\r\nThe datasets_infos.json and the data on GCS are updated.\r\n\r\nAnd I also added a check to make sure we don't have post processing resources in sub-directories.",
"I added a dummy config that can be loaded with:\r\n```python\r\nwiki = load_dataset(\"wiki_dpr\", \"dummy_psgs_w100_no_embeddings\", with_index=True, split=\"train\")\r\n```\r\nIt's only 6MB of arrow files and 30MB of index"
] | 1,594,398,359,000 | 1,594,647,843,000 | 1,594,647,841,000 | MEMBER | null | false | {
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"merged_at": 1594647841000
} | # Post processing of datasets for faiss indexes
Now that we can have datasets with embeddings (see `wiki_pr` for example), we can allow users to load the dataset + get the Faiss index that comes with it to do nearest neighbors queries.
## Implementation proposition
- Faiss indexes have to be added to the `nlp.Dataset` object, and therefore it's in a different scope that what are doing the `_split_generators` and `_generate_examples` methods of `nlp.DatasetBuilder`. Therefore I added a new method for post processing of the `nlp.Dataset` object called `_post_process` (name could change)
- The role of `_post_process` is to apply dataset transforms (filter/map etc.) or indexing functions (add_faiss_index) to modify/enrich the `nlp.Dataset` object. It is not part of the `download_and_prepare` process (that is focused on arrow files creation) so the post processing is run inside the `as_dataset` method.
- `_post_process` can generate new files (cached files from dataset transforms or serialized faiss indexes) and their names are defined by `_post_processing_resources`
- as we know what are the post processing resources, we can download them automatically from google storage instead of computing them if they're available (as we do for arrow files)
I'd happy to discuss these choices !
## The `wiki_dpr` index
It takes 1h20 and ~7GB of memory to compute. The final index is 1.42GB and takes ~1.5GB of memory.
This is pretty cool given that a naive flat index would take 170GB of memory to store the 21M vectors of dim 768.
I couldn't use directly the Faiss `index_factory` as I needed to set the metric to inner product.
## Example of usage
```python
import nlp
dset = nlp.load_dataset(
"wiki_dpr",
"psgs_w100_with_nq_embeddings",
split="train",
with_index=True
)
print(len(dset), dset.list_indexes()) # (21015300, ['embeddings'])
```
(it also works with the dataset configuration without the embeddings because I added the index file in google storage for this one too)
## Demo
You can also check a demo on google colab that shows how to use it with the DPRQuestionEncoder from transformers:
https://colab.research.google.com/drive/1FakNU8W5EPMcWff7iP1H6REg3XSS0YLp?usp=sharing
| {
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https://api.github.com/repos/huggingface/datasets/issues/373 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/373/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/373/comments | https://api.github.com/repos/huggingface/datasets/issues/373/events | https://github.com/huggingface/datasets/issues/373 | 654,845,133 | MDU6SXNzdWU2NTQ4NDUxMzM= | 373 | Segmentation fault when loading local JSON dataset as of #372 | {
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"I've seen this sort of thing before -- it might help to delete the directory -- I've also noticed that there is an error with the json Dataloader for any data I've tried to load. I've replaced it with this, which skips over the data feature population step:\r\n\r\n\r\n```python\r\nimport os\r\n\r\nimport pyarrow.json as paj\r\n\r\nimport nlp as hf_nlp\r\n\r\nfrom nlp import DatasetInfo, BuilderConfig, SplitGenerator, Split, utils\r\nfrom nlp.arrow_writer import ArrowWriter\r\n\r\n\r\nclass JSONDatasetBuilder(hf_nlp.ArrowBasedBuilder):\r\n BUILDER_CONFIG_CLASS = BuilderConfig\r\n\r\n def _info(self):\r\n return DatasetInfo()\r\n\r\n def _split_generators(self, dl_manager):\r\n \"\"\" We handle string, list and dicts in datafiles\r\n \"\"\"\r\n if isinstance(self.config.data_files, (str, list, tuple)):\r\n files = self.config.data_files\r\n if isinstance(files, str):\r\n files = [files]\r\n return [SplitGenerator(name=Split.TRAIN, gen_kwargs={\"files\": files})]\r\n splits = []\r\n for split_name in [Split.TRAIN, Split.VALIDATION, Split.TEST]:\r\n if split_name in self.config.data_files:\r\n files = self.config.data_files[split_name]\r\n if isinstance(files, str):\r\n files = [files]\r\n splits.append(SplitGenerator(name=split_name, gen_kwargs={\"files\": files}))\r\n return splits\r\n\r\n def _prepare_split(self, split_generator):\r\n fname = \"{}-{}.arrow\".format(self.name, split_generator.name)\r\n fpath = os.path.join(self._cache_dir, fname)\r\n\r\n writer = ArrowWriter(path=fpath)\r\n\r\n generator = self._generate_tables(**split_generator.gen_kwargs)\r\n for key, table in utils.tqdm(generator, unit=\" tables\", leave=False):\r\n writer.write_table(table)\r\n num_examples, num_bytes = writer.finalize()\r\n\r\n split_generator.split_info.num_examples = num_examples\r\n split_generator.split_info.num_bytes = num_bytes\r\n\r\n def _generate_tables(self, files):\r\n for i, file in enumerate(files):\r\n pa_table = paj.read_json(\r\n file\r\n )\r\n yield i, pa_table\r\n\r\n```",
"Yes, deleting the directory solves the error whenever I try to rerun.\r\n\r\nBy replacing the json-loader, you mean the cached file in my `site-packages` directory? e.g. `/home/XXX/.cache/lib/python3.7/site-packages/nlp/datasets/json/(...)/json.py` \r\n\r\nWhen I was testing this out before the #372 PR was merged I had issues installing it properly locally. Since the `json.py` script was downloaded instead of actually using the one provided in the local install. Manually updating that file seemed to solve it, but it didn't seem like a proper solution. Especially when having to run this on a remote compute cluster with no access to that directory.",
"I see, diving in the JSON file for SQuAD it's a pretty complex structure.\r\n\r\nThe best solution for you, if you have a dataset really similar to SQuAD would be to copy and modify the SQuAD data processing script. We will probably add soon an option to be able to specify file path to use instead of the automatic URL encoded in the script but in the meantime you can:\r\n- copy the [squad script](https://github.com/huggingface/nlp/blob/master/datasets/squad/squad.py) in a new script for your dataset\r\n- in the new script replace [these `urls_to_download `](https://github.com/huggingface/nlp/blob/master/datasets/squad/squad.py#L99-L102) by `urls_to_download=self.config.data_files`\r\n- load the dataset with `dataset = load_dataset('path/to/your/new/script', data_files={nlp.Split.TRAIN: \"./datasets/train-v2.0.json\"})`\r\n\r\nThis way you can reuse all the processing logic of the SQuAD loading script.",
"This seems like a more sensible solution! Thanks, @thomwolf. It's been a little daunting to understand what these scripts actually do, due to the level of abstraction and central documentation.\r\n\r\nAm I correct in assuming that the `_generate_examples()` function is the actual procedure for how the data is loaded from file? Meaning that essentially with a file containing another format, that is the only function that requires re-implementation? I'm working with a lot of datasets that, due to licensing and privacy, cannot be published. As this library is so neatly integrated with the transformers library and gives easy access to public sets such as SQUAD and increased performance, it is very neat to be able to load my private sets as well. As of now, I have just been working on scripts for translating all my data into the SQUAD-format before using the json script, but I see that it might not be necessary after all. ",
"Yes `_generate_examples()` is the main entry point. If you change the shape of the returned dictionary you also need to update the `features` in the `_info`.\r\n\r\nI'm currently writing the doc so it should be easier soon to use the library and know how to add your datasets.\r\n",
"Could you try to update pyarrow to >=0.17.0 @vegarab ?\r\nI don't have any segmentation fault with my version of pyarrow (0.17.1)\r\n\r\nI tested with\r\n```python\r\nimport nlp\r\ns = nlp.load_dataset(\"json\", data_files=\"train-v2.0.json\", field=\"data\", split=\"train\")\r\ns[0]\r\n# {'title': 'Normans', 'paragraphs': [{'qas': [{'question': 'In what country is Normandy located?', 'id':...\r\n```",
"Also if you want to have your own dataset script, we now have a new documentation !\r\nSee here:\r\nhttps://huggingface.co/nlp/add_dataset.html",
"@lhoestq \r\nFor some reason, I am not able to reproduce the segmentation fault, on pyarrow==0.16.0. Using the exact same environment and file.\r\n\r\nAnyhow, I discovered that pyarrow>=0.17.0 is required to read in a JSON file where the pandas structs contain lists. Otherwise, pyarrow complains when attempting to cast the struct:\r\n```py\r\nimport nlp\r\n>>> s = nlp.load_dataset(\"json\", data_files=\"datasets/train-v2.0.json\", field=\"data\", split=\"train\")\r\nUsing custom data configuration default\r\n>>> s[0]\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/nlp/arrow_dataset.py\", line 558, in __getitem__\r\n format_kwargs=self._format_kwargs,\r\n File \"/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/nlp/arrow_dataset.py\", line 498, in _getitem\r\n outputs = self._unnest(self._data.slice(key, 1).to_pandas().to_dict(\"list\"))\r\n File \"pyarrow/array.pxi\", line 559, in pyarrow.lib._PandasConvertible.to_pandas\r\n File \"pyarrow/table.pxi\", line 1367, in pyarrow.lib.Table._to_pandas\r\n File \"/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/pyarrow/pandas_compat.py\", line 766, in table_to_blockmanager\r\n blocks = _table_to_blocks(options, table, categories, ext_columns_dtypes)\r\n File \"/home/vegarab/.conda/envs/torch/lib/python3.7/site-packages/pyarrow/pandas_compat.py\", line 1101, in _table_to_blocks\r\n list(extension_columns.keys()))\r\n File \"pyarrow/table.pxi\", line 881, in pyarrow.lib.table_to_blocks\r\n File \"pyarrow/error.pxi\", line 105, in pyarrow.lib.check_status\r\npyarrow.lib.ArrowNotImplementedError: Not implemented type for Arrow list to pandas: struct<qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>, context: string>\r\n>>> s\r\nDataset(schema: {'title': 'string', 'paragraphs': 'list<item: struct<qas: list<item: struct<question: string, id: string, answers: list<item: struct<text: string, answer_start: int64>>, is_impossible: bool, plausible_answers: list<item: struct<text: string, answer_start: int64>>>>, context: string>>'}, num_rows: 35)\r\n```\r\n\r\nUpgrading to >=0.17.0 provides the same dataset structure, but accessing the records is possible without the same exception. \r\n\r\n",
"Very happy to see some extended documentation! ",
"#376 seems to be reporting the same issue as mentioned above. ",
"This issue helped me a lot, thanks.\r\nHope this issue will be fixed soon."
] | 1,594,393,465,000 | 1,608,017,240,000 | null | CONTRIBUTOR | null | null | null | The last issue was closed (#369) once the #372 update was merged. However, I'm still not able to load a SQuAD formatted JSON file. Instead of the previously recorded pyarrow error, I now get a segmentation fault.
```
dataset = nlp.load_dataset('json', data_files={nlp.Split.TRAIN: ["./datasets/train-v2.0.json"]}, field='data')
```
causes
```
Using custom data configuration default
Downloading and preparing dataset json/default (download: Unknown size, generated: Unknown size, total: Unknown size) to /home/XXX/.cache/huggingface/datasets/json/default/0.0.0...
0 tables [00:00, ? tables/s]Segmentation fault (core dumped)
```
where `./datasets/train-v2.0.json` is downloaded directly from https://rajpurkar.github.io/SQuAD-explorer/.
This is consistent with other SQuAD-formatted JSON files.
When attempting to load the dataset again, I get the following:
```
Using custom data configuration default
Traceback (most recent call last):
File "dataloader.py", line 6, in <module>
'json', data_files={nlp.Split.TRAIN: ["./datasets/train-v2.0.json"]}, field='data')
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/load.py", line 524, in load_dataset
save_infos=save_infos,
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/builder.py", line 382, in download_and_prepare
with incomplete_dir(self._cache_dir) as tmp_data_dir:
File "/home/XXX/.conda/envs/torch/lib/python3.7/contextlib.py", line 112, in __enter__
return next(self.gen)
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/builder.py", line 368, in incomplete_dir
os.makedirs(tmp_dir)
File "/home/XXX/.conda/envs/torch/lib/python3.7/os.py", line 223, in makedirs
mkdir(name, mode)
FileExistsError: [Errno 17] File exists: '/home/XXX/.cache/huggingface/datasets/json/default/0.0.0.incomplete'
```
(Not sure if you wanted this in the previous issue #369 or not as it was closed.) | {
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https://api.github.com/repos/huggingface/datasets/issues/372 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/372/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/372/comments | https://api.github.com/repos/huggingface/datasets/issues/372/events | https://github.com/huggingface/datasets/pull/372 | 654,774,420 | MDExOlB1bGxSZXF1ZXN0NDQ3NDMzNTA4 | 372 | Make the json script more flexible | {
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} | Fix https://github.com/huggingface/nlp/issues/359
Fix https://github.com/huggingface/nlp/issues/369
JSON script now can accept JSON files containing a single dict with the records as a list in one attribute to the dict (previously it only accepted JSON files containing records as rows of dicts in the file).
In this case, you should indicate using `field=XXX` the name of the field in the JSON structure which contains the records you want to load. The records can be a dict of lists or a list of dicts.
E.g. to load the SQuAD dataset JSON (without using the `squad` specific dataset loading script), in which the data rows are in the `data` field of the JSON dict, you can do:
```python
from nlp import load_dataset
dataset = load_dataset('json', data_files='/PATH/TO/JSON', field='data')
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/371 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/371/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/371/comments | https://api.github.com/repos/huggingface/datasets/issues/371/events | https://github.com/huggingface/datasets/pull/371 | 654,668,242 | MDExOlB1bGxSZXF1ZXN0NDQ3MzQ4NDgw | 371 | Fix cached file path for metrics with different config names | {
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"Thanks for the fast fix!"
] | 1,594,375,344,000 | 1,594,388,722,000 | 1,594,388,720,000 | MEMBER | null | false | {
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} | The config name was not taken into account to build the cached file path.
It should fix #368 | {
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https://api.github.com/repos/huggingface/datasets/issues/370 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/370/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/370/comments | https://api.github.com/repos/huggingface/datasets/issues/370/events | https://github.com/huggingface/datasets/pull/370 | 654,304,193 | MDExOlB1bGxSZXF1ZXN0NDQ3MDU3NTIw | 370 | Allow indexing Dataset via np.ndarray | {
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"Looks like a flaky CI, failed download from S3."
] | 1,594,323,795,000 | 1,594,389,944,000 | 1,594,389,943,000 | CONTRIBUTOR | null | false | {
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"I am able to reproduce this with the official SQuAD `train-v2.0.json` file downloaded directly from https://rajpurkar.github.io/SQuAD-explorer/",
"I am facing this issue in transformers library 3.0.2 while reading a csv using datasets.\r\nIs this fixed in latest version? \r\nI updated the latest version 4.0.1 but still getting this error. What could cause this error?"
] | 1,594,311,413,000 | 1,608,073,642,000 | 1,594,392,726,000 | CONTRIBUTOR | null | null | null | Trying to load a local SQuAD-formatted dataset (from a JSON file, about 60MB):
```
dataset = nlp.load_dataset(path='json', data_files={nlp.Split.TRAIN: ["./path/to/file.json"]})
```
causes
```
Traceback (most recent call last):
File "dataloader.py", line 9, in <module>
["./path/to/file.json"]})
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/load.py", line 524, in load_dataset
save_infos=save_infos,
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/builder.py", line 432, in download_and_prepare
dl_manager=dl_manager, verify_infos=verify_infos, **download_and_prepare_kwargs
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/builder.py", line 483, in _download_and_prepare
self._prepare_split(split_generator, **prepare_split_kwargs)
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/builder.py", line 719, in _prepare_split
for key, table in utils.tqdm(generator, unit=" tables", leave=False):
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/tqdm/std.py", line 1129, in __iter__
for obj in iterable:
File "/home/XXX/.conda/envs/torch/lib/python3.7/site-packages/nlp/datasets/json/88c1bc5c68489f7eda549ed05a5a738527c613b3e7a4ee3524d9d233353a949b/json.py", line 53, in _generate_tables
file, read_options=self.config.pa_read_options, parse_options=self.config.pa_parse_options,
File "pyarrow/_json.pyx", line 191, in pyarrow._json.read_json
File "pyarrow/error.pxi", line 85, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: straddling object straddles two block boundaries (try to increase block size?)
```
I haven't been able to find any reports of this specific pyarrow error here or elsewhere. | {
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