Datasets:

NofPmids
float64
1
96
NofSnps
float64
0
1.07k
associationType
stringclasses
3 values
diseaseId
stringlengths
8
12
diseaseName
stringclasses
587 values
diseaseType
stringclasses
3 values
disease_mention
stringlengths
1
89
geneId
stringlengths
1
30
geneSymbol
stringlengths
2
10
gene_mention
stringlengths
2
69
originalSource
stringclasses
1 value
pmid
int64
104k
28.2M
raw_sentence
stringlengths
39
1.09k
score
float64
0.2
1
sentence
stringlengths
143
948
source
stringclasses
9 values
2
2
Biomarker
C0349639
Juvenile Myelomonocytic Leukemia
disease
juvenile myelomonocytic leukaemia
4893
NRAS
NRAS
CTD_human
19,775,298
Germ-line mutation of the NRAS gene may be responsible for the development of juvenile myelomonocytic leukaemia.
0.610634
Germ-line mutation of the <span class="gene" id="19775298-0-26-30">NRAS</span> gene may be responsible for the development of <span class="disease" id="19775298-0-78-111">juvenile myelomonocytic leukaemia</span>.
CTD_human;ORPHANET;UNIPROT
1
0
Biomarker
C0004763
Barrett Esophagus
disease
BE
3576
CXCL8
IL-8
CTD_human
15,387,324
(1) COX-2, PPARgamma, HGF, gastrin, and its receptor are significantly upregulated in BE, suggesting a possible role for these factors in Barrett's carcinogenesis; (2) the increased NFkappaB activity is probably linked to increased IL-8 and COX-2 expression; and (3) PPARgamma ligands might be useful as a new therapeutic option in the prevention and treatment of Barrett's carcinoma.
0.202956
(1) COX-2, PPARgamma, HGF, gastrin, and its receptor are significantly upregulated in <span class="disease" id="15387324-9-86-88">BE</span>, suggesting a possible role for these factors in Barrett's carcinogenesis; (2) the increased NFkappaB activity is probably linked to increased <span class="gene" id="15387324-9-232-236">IL-8</span> and COX-2 expression; and (3) PPARgamma ligands might be useful as a new therapeutic option in the prevention and treatment of Barrett's carcinoma.
CTD_human
null
null
Negative
OMIM:612862
null
null
DVT
10507
null
GR3
null
28,017,046
Two patients experienced DVT's (one GR3 and one GR4).
null
null
null
3
0
Biomarker
C0027627
Neoplasm Metastasis
phenotype
metastatic tumor
7422
VEGFA
VEGF
CTD_human
15,659,795
We have investigated the effect of IFNs/IFO treatment on the expression of vascular endothelial growth factor (VEGF), matrix metalloproteinase 9 (MMP-9), and urokinase plasminogen activator receptor (uPAR), three key mediators of tumor growth and angiogenesis, in tumor xenografts generated either from a primary tumor (EW7) or from a metastatic tumor (COH).
0.342857
We have investigated the effect of IFNs/IFO treatment on the expression of <span class="gene" id="15659795-5-75-109">vascular endothelial growth factor</span> (<span class="gene" id="15659795-5-111-115">VEGF</span>), matrix metalloproteinase 9 (MMP-9), and urokinase plasminogen activator receptor (uPAR), three key mediators of tumor growth and angiogenesis, in tumor xenografts generated either from a primary tumor (EW7) or from a <span class="disease" id="15659795-5-335-351">metastatic tumor</span> (COH).
CTD_human
null
null
Negative
MESH:D005198
null
null
FBS
15450
null
HPL
null
28,024,508
Bone marrow-derived mesenchymal stem cells were cultured in a-minimal essential medium (a-MEM) containing 10% HPL or 10% FBS.
null
null
null
1
0
Biomarker
C3887645
Job Syndrome
disease
hyper IgE syndrome
6774
STAT3
STAT3
CTD_human
25,038,750
These findings emphasize the critical role of STAT3 in autoimmune disease and contrast with the germline inactivating STAT3 mutations that result in hyper IgE syndrome.
0.23053
These findings emphasize the critical role of <span class="gene" id="25038750-3-46-51">STAT3</span> in autoimmune disease and contrast with the germline inactivating <span class="gene" id="25038750-3-118-123">STAT3</span> mutations that result in <span class="disease" id="25038750-3-149-167">hyper IgE syndrome</span>.
CTD_human
1
0
Biomarker
C0025149
Medulloblastoma
disease
medulloblastomas
6447
SCG5
SGNE1
CTD_human
17,334,394
SGNE1/7B2 is epigenetically altered and transcriptionally downregulated in human medulloblastomas.
0.203008
<span class="gene" id="17334394-0-0-5">SGNE1</span>/7B2 is epigenetically altered and transcriptionally downregulated in human <span class="disease" id="17334394-0-81-97">medulloblastomas</span>.
CTD_human
null
null
Negative
MESH:D009136
null
null
FacioScapuloHumeral Muscular Dystrophy
2489
null
FSHD
null
28,040,729
FacioScapuloHumeral Muscular Dystrophy (FSHD), one of the most common myopathies, is characterized by a complex interplay of genetic and epigenetic events.
null
null
null
null
null
Negative
MESH:D015658
null
null
HIV-1
155971
null
Env
null
28,133,805
HIV-1 and its surface envelope glycoproteins (Env), gp120 and gp41, have evolved immune evasion strategies that render the elicitation of effective antibody responses to the functional Env entry unit extremely difficult.
null
null
null
4
0
Therapeutic
C0003873
Rheumatoid Arthritis
disease
RA
7124
TNF
TNF
CTD_human
2,001,072
TNF thus appears an additional component of RA subclinical alveolitis in RA, but its prognostic value and its precise role in lung damage remain to be determined.
0.50559
<span class="gene" id="2001072-7-0-3">TNF</span> thus appears an additional component of <span class="disease" id="2001072-7-44-46">RA</span> subclinical alveolitis in <span class="disease" id="2001072-7-73-75">RA</span>, but its prognostic value and its precise role in lung damage remain to be determined.
CTD_human
1
0
Biomarker
C0017601
Glaucoma
disease
glaucoma
4638
MYLK
MYLK
CTD_human
20,375,339
MYLK may be a new target for intervention in glaucoma to alter reactive astrocyte migration in the ONH.
0.200275
<span class="gene" id="20375339-11-0-4">MYLK</span> may be a new target for intervention in <span class="disease" id="20375339-11-45-53">glaucoma</span> to alter reactive astrocyte migration in the ONH.
CTD_human
6
0
Biomarker
C0005586
Bipolar Disorder
disease
bipolar disorder
6285
S100B
S100B
CTD_human
15,581,912
Our findings reinforce the role of astroglial cells in the pathogenesis of bipolar disorder and S100B protein as a marker of bipolar mania.
0.402682
Our findings reinforce the role of astroglial cells in the pathogenesis of <span class="disease" id="15581912-5-75-91">bipolar disorder</span> and <span class="gene" id="15581912-5-96-101">S100B</span> protein as a marker of bipolar mania.
CTD_human;PSYGENET
1
0
Biomarker
C0014544
Epilepsy
disease
epilepsy
7249
TSC2
Tsc2
CTD_human
21,062,901
Tsc2 gene inactivation causes a more severe epilepsy phenotype than Tsc1 inactivation in a mouse model of tuberous sclerosis complex.
0.406253
<span class="gene" id="21062901-0-0-4">Tsc2</span> gene inactivation causes a more severe <span class="disease" id="21062901-0-44-52">epilepsy</span> phenotype than Tsc1 inactivation in a mouse model of tuberous sclerosis complex.
CTD_human;HPO
null
null
Negative
MESH:D006973
null
null
hypertension
26198
null
COX-2
null
28,054,752
The data underscore the preferential capacity of selective COX-2 inhibition by celecoxib to mitigate CSA hypertension and consequent alterations in cardiac performance and autonomic balance.
null
null
null
2
1
Biomarker
C0025202
melanoma
disease
malignant melanoma
51151
SLC45A2
SLC45A2
CTD_human
18,563,784
SLC45A2: a novel malignant melanoma-associated gene.
0.218391
<span class="gene" id="18563784-0-0-7">SLC45A2</span>: a novel <span class="disease" id="18563784-0-17-35">malignant melanoma</span>-associated gene.
CTD_human
1
0
Biomarker
C0023895
Liver diseases
group
liver disease
4524
MTHFR
MTHFR
CTD_human
16,877,991
Our data suggest that folate intake and the MTHFR polymorphism represent a part of the link between antioxidant status and liver disease in obese adolescent girls.
0.209903
Our data suggest that folate intake and the <span class="gene" id="16877991-12-44-49">MTHFR</span> polymorphism represent a part of the link between antioxidant status and <span class="disease" id="16877991-12-123-136">liver disease</span> in obese adolescent girls.
CTD_human
1
0
Biomarker
C0004775
Bartter Disease
disease
Bartter's syndrome
6557
SLC12A1
NKCC2
CTD_human
10,561,751
Mutations of another voltage-gated chloride channel, CLC-Kb, are associated with a form of Bartter's syndrome, whereas other forms of Bartter's syndrome are caused by mutations in the bumetanide-sensitive sodium-potassium-chloride cotransporter (NKCC2) and the potassium channel, ROMK.
0.214517
Mutations of another voltage-gated chloride channel, CLC-Kb, are associated with a form of <span class="disease" id="10561751-3-91-109">Bartter's syndrome</span>, whereas other forms of <span class="disease" id="10561751-3-134-152">Bartter's syndrome</span> are caused by mutations in the bumetanide-sensitive sodium-potassium-chloride cotransporter (<span class="gene" id="10561751-3-246-251">NKCC2</span>) and the potassium channel, ROMK.
CTD_human
1
5
Biomarker
C0266313
Allanson Pantzar McLeod syndrome
disease
renal tubular dysgenesis
185
AGTR1
angiotensin II receptor type 1
CTD_human
16,116,425
We studied 11 individuals with renal tubular dysgenesis, belonging to nine families, and found that they had homozygous or compound heterozygous mutations in the genes encoding renin, angiotensinogen, angiotensin converting enzyme or angiotensin II receptor type 1.
0.6
We studied 11 individuals with <span class="disease" id="16116425-3-31-55">renal tubular dysgenesis</span>, belonging to nine families, and found that they had homozygous or compound heterozygous mutations in the genes encoding renin, angiotensinogen, angiotensin converting enzyme or <span class="gene" id="16116425-3-234-264">angiotensin II receptor type 1</span>.
CTD_human;HPO;ORPHANET;UNIPROT
3
0
Biomarker
C0524851
Neurodegenerative Disorders
group
neurodegenerative disorders
3162
HMOX1
HO-1
CTD_human
10,942,521
Activation of this HO-1-MnSOD axis may play an important role in the pathogenesis of Alzheimer disease, Parkinson disease and other free radical-related neurodegenerative disorders.
0.201374
Activation of this <span class="gene" id="10942521-6-19-23">HO-1</span>-MnSOD axis may play an important role in the pathogenesis of Alzheimer disease, Parkinson disease and other free radical-related <span class="disease" id="10942521-6-153-180">neurodegenerative disorders</span>.
CTD_human
null
null
Negative
MESH:D002289
null
null
non-small-cell lung cancer
11682
null
ALK
null
28,189,201
PURPOSE: To evaluate and compare the volumetric tumor burden changes during crizotinib therapy in mice and human cohorts with ALK-rearranged non-small-cell lung cancer (NSCLC).
null
null
null
1
0
Biomarker
C0079774
Peripheral T-Cell Lymphoma
disease
PTCL
472
ATM
ATM
CTD_human
24,413,734
In addition, we describe new and recurrent, albeit less frequent, genetic defects including mutations in FYN, ATM, B2M and CD58 implicating SRC signaling, impaired DNA damage response and escape from immune surveillance mechanisms in the pathogenesis of PTCL.
0.200824
In addition, we describe new and recurrent, albeit less frequent, genetic defects including mutations in FYN, <span class="gene" id="24413734-5-110-113">ATM</span>, B2M and CD58 implicating SRC signaling, impaired DNA damage response and escape from immune surveillance mechanisms in the pathogenesis of <span class="disease" id="24413734-5-254-258">PTCL</span>.
CTD_human
1
0
Biomarker
C0677886
Epithelial ovarian cancer
disease
EOC
171024
SYNPO2
SYNPO2
CTD_human
25,581,431
Variants at 1p36 (nearest gene, WNT4), 4q26 (SYNPO2), 9q34.2 (ABO) and 17q11.2 (ATAD5) were associated with EOC risk, and at 1p34.3 (RSPO1) and 6p22.1 (GPX6) variants were specifically associated with the serous EOC subtype, all with P < 5 × 10(-8).
0.200275
Variants at 1p36 (nearest gene, WNT4), 4q26 (<span class="gene" id="25581431-5-45-51">SYNPO2</span>), 9q34.2 (ABO) and 17q11.2 (ATAD5) were associated with <span class="disease" id="25581431-5-108-111">EOC</span> risk, and at 1p34.3 (RSPO1) and 6p22.1 (GPX6) variants were specifically associated with the serous <span class="disease" id="25581431-5-212-215">EOC</span> subtype, all with P &lt; 5 &times; 10(-8).
CTD_human
null
null
Negative
MESH:D008992
null
null
Cynomolgus monkeys
723827
null
miR-221
null
28,131,282
To evaluate the LNA-i-miR-221 pharmacokinetics and pharmacodynamics, novel assays for oligonucleotides quantification in NOD.SCID mice and Cynomolgus monkeys (Macaca fascicularis) plasma, urine and tissues were developed.
null
null
null
null
null
Negative
MESH:D064420
null
null
toxicity
963084
null
CPT-11
null
28,014,286
To determine the efficacy and toxicity of CPT-11 and CDDP with TRT, we conducted a phase II study in patients with NSCLC.
null
null
null
1
0
Biomarker
C2239176
Liver carcinoma
disease
hepatocellular carcinomas
5502
PPP1R1A
Protein phosphatase inhibitor-1
CTD_human
15,010,824
Protein phosphatase inhibitor-1 mRNA expression correlates with neoplastic transformation of epithelial liver cells and progression of hepatocellular carcinomas.
0.2
<span class="gene" id="15010824-0-0-31">Protein phosphatase inhibitor-1</span> mRNA expression correlates with neoplastic transformation of epithelial liver cells and progression of <span class="disease" id="15010824-0-135-160">hepatocellular carcinomas</span>.
CTD_human
null
null
Negative
MESH:D001859
null
null
CIBP
63873
null
TRPV4
null
28,103,434
Expression of TRPV1, TRPV4, ASIC1, ASIC2, and ASIC3 in the CIBP with quetiapine treatment group was significantly lower than that in the CIBP group.
null
null
null
null
null
Negative
MESH:C536962
null
null
TS
1956
null
EGFR
null
28,016,543
The pathological examination of pre-treatment biopsy and operative specimen considered the immunohistochemical determination of Ki67, p53, bcl2, TS, EGFR, MLH1 and MSH2.
null
null
null
69
0
Therapeutic
C0020538
Hypertensive disease
group
hypertension
183
AGT
angiotensin II
CTD_human
24,342,267
Chronic infusion of enalaprilat into hypothalamic paraventricular nucleus attenuates angiotensin II-induced hypertension and cardiac hypertrophy by restoring neurotransmitters and cytokines.
0.52
Chronic infusion of enalaprilat into hypothalamic paraventricular nucleus attenuates <span class="gene" id="24342267-0-85-99">angiotensin II</span>-induced <span class="disease" id="24342267-0-108-120">hypertension</span> and cardiac hypertrophy by restoring neurotransmitters and cytokines.
CTD_human
2
203
Biomarker
C0677776
Hereditary Breast and Ovarian Cancer Syndrome
disease
hereditary breast and ovarian cancer
672
BRCA1
BRCA1
CTD_human
8,644,702
Founding BRCA1 mutations in hereditary breast and ovarian cancer in southern Sweden.
0.462363
Founding <span class="gene" id="8644702-0-9-14">BRCA1</span> mutations in <span class="disease" id="8644702-0-28-64">hereditary breast and ovarian cancer</span> in southern Sweden.
CTD_human;ORPHANET
1
0
Biomarker
C0007124
Noninfiltrating Intraductal Carcinoma
disease
DCIS
3091
HIF1A
HIF-1alpha
CTD_human
20,526,721
HIF-1alpha was not expressed in benign breast tissue, whereas it was significantly expressed in DH, ADH, DCIS, and IDC (p < 0.001).
0.202956
<span class="gene" id="20526721-8-0-10">HIF-1alpha</span> was not expressed in benign breast tissue, whereas it was significantly expressed in DH, ADH, <span class="disease" id="20526721-8-105-109">DCIS</span>, and IDC (p &lt; 0.001).
CTD_human
1
0
Biomarker
C0279626
Squamous cell carcinoma of esophagus
disease
esophageal squamous cell carcinoma
7515
XRCC1
X-ray repair cross-complementing 1
CTD_human
16,639,733
Dietary selenium intake, aldehyde dehydrogenase-2 and X-ray repair cross-complementing 1 genetic polymorphisms, and the risk of esophageal squamous cell carcinoma.
0.203022
Dietary selenium intake, aldehyde dehydrogenase-2 and <span class="gene" id="16639733-0-54-88">X-ray repair cross-complementing 1</span> genetic polymorphisms, and the risk of <span class="disease" id="16639733-0-128-162">esophageal squamous cell carcinoma</span>.
CTD_human
5
83
Biomarker
C1856113
Mowat-Wilson syndrome
disease
Mowat-Wilson syndrome
9839
ZEB2
Zfhx1b
CTD_human
17,478,475
Neural crest-specific removal of Zfhx1b in mouse leads to a wide range of neurocristopathies reminiscent of Mowat-Wilson syndrome.
0.489341
Neural crest-specific removal of <span class="gene" id="17478475-0-33-39">Zfhx1b</span> in mouse leads to a wide range of neurocristopathies reminiscent of <span class="disease" id="17478475-0-108-129">Mowat-Wilson syndrome</span>.
CTD_human;UNIPROT
null
null
Negative
MESH:D007249
null
null
inflammation
14824
null
Progranulin
null
28,011,648
Progranulin (PGRN) restrains inflammation and is therapeutic against inflammatory arthritis; however, the underlying immunological mechanism remains unknown.
null
null
null
1
1
Biomarker
C0015625
Fanconi Anemia
disease
FA
2177
FANCD2
Fancd2
CTD_human
14,667,412
Thus, Fancd2 is essential during embryogenesis to prevent inappropriate apoptosis in neural cells and other tissues undergoing high levels of proliferative expansion, implicating this mechanism in the congenital abnormalities observed in human infants with FA.
0.450738
Thus, <span class="gene" id="14667412-5-6-12">Fancd2</span> is essential during embryogenesis to prevent inappropriate apoptosis in neural cells and other tissues undergoing high levels of proliferative expansion, implicating this mechanism in the congenital abnormalities observed in human infants with <span class="disease" id="14667412-5-257-259">FA</span>.
CTD_human;ORPHANET
null
null
Negative
MESH:D015658
null
null
HIV
5725
null
PTB
null
28,033,402
The incidence rate for PTB and HIV was 0.345 per 100,000.
null
null
null
1
2
Biomarker
C0796113
Nephroblastomatosis, fetal ascites, macrosomia and Wilms tumor
disease
Perlman syndrome
129563
DIS3L2
DIS3L2
CTD_human
22,306,653
Germline mutations in DIS3L2 cause the Perlman syndrome of overgrowth and Wilms tumor susceptibility.
0.601374
Germline mutations in <span class="gene" id="22306653-0-22-28">DIS3L2</span> cause the <span class="disease" id="22306653-0-39-55">Perlman syndrome</span> of overgrowth and Wilms tumor susceptibility.
CTD_human;ORPHANET;UNIPROT
null
null
Negative
MESH:D030342
null
null
autosomal recessive multisystem disorder
9361
null
LONP1
null
28,148,925
UNASSIGNED: Cerebral, ocular, dental, auricular, skeletal (CODAS) syndrome is a rare autosomal recessive multisystem disorder caused by mutations in LONP1.
null
null
null
null
null
Negative
MESH:D001927
null
null
cutaneous lesion
100188844
null
BPAD
null
28,196,994
AIM: To assess the incidence of cutaneous lesion in bipolar affective disorder (BPAD) patients on lithium therapy.
null
null
null
null
null
Negative
MESH:D009369
null
null
tumors
338412
null
PS 2
null
28,022,538
As of January 20, 2011, 48 pts (22 male; median age 60.5 yrs, ECOG PS 0 [N=11], PS 1 [N=36], PS 2 [N=1]) with solid tumors were enrolled.
null
null
null
2
0
Biomarker
C0022658
Kidney Diseases
group
renal disorder
23322
RPGRIP1L
RPGRIP1L
CTD_human
17,558,409
In addition, we show that RPGRIP1L colocalizes at the basal body and centrosomes with the protein products of both NPHP6 and NPHP4, known genes associated with MKS, CORS and nephronophthisis (a related renal disorder and ciliopathy).
0.400275
In addition, we show that <span class="gene" id="17558409-3-26-34">RPGRIP1L</span> colocalizes at the basal body and centrosomes with the protein products of both NPHP6 and NPHP4, known genes associated with MKS, CORS and nephronophthisis (a related <span class="disease" id="17558409-3-202-216">renal disorder</span> and ciliopathy).
CTD_human;HPO
12
23
Biomarker
C1853926
NONAKA MYOPATHY
disease
Nonaka myopathy
10020
GNE
UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase
CTD_human
11,916,006
Nonaka myopathy is caused by mutations in the UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase gene (GNE).
0.617857
<span class="disease" id="11916006-0-0-15">Nonaka myopathy</span> is caused by mutations in the <span class="gene" id="11916006-0-46-108">UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase</span> gene (GNE).
CTD_human;ORPHANET;UNIPROT
null
null
Negative
MESH:D058225
null
null
amyloid deposition
11820
null
amyloid precursor protein
null
28,039,950
METHODS: Wild-type mice, in which amyloid deposition is absent, were compared to transgenic amyloid precursor protein (APP) littermates (TgSwDI) which develop age-dependent increases in amyloid.
null
null
null
null
null
Negative
MESH:D014565
null
null
non-urogenital system cancer
101805488
null
CCAT2
null
28,089,750
Subgroup analysis revealed a significant association between CCAT2 and OS in urogenital system (HR=1.70, 95% CI: 1.27-2.26, p<0.003) and non-urogenital system cancer patients (HR=3.18, 95% CI: 2.09-4.83, p<0.0001).
null
null
null
null
null
Negative
MESH:D009765
null
null
obesity
291905
null
Fto
null
28,179,100
The fat mass and obesity associated (Fto) and iroquois homeobox 3 (Irx3) genes have been recognised as important obesity-related genes.
null
null
null
null
null
Negative
MESH:D009369
null
null
cancer
1019;1021
null
CDK4/6
null
28,174,091
Palbociclib, a selective CDK4/6 inhibitor, is now approved for the treatment of ER+/HER2- advanced breast cancer.
null
null
null
6
0
Biomarker
C0036572
Seizures
phenotype
seizures
5020
OXT
Oxytocin
CTD_human
19,397,503
Oxytocin infusion: acute hyponatraemia, seizures and coma.
0.2
<span class="gene" id="19397503-0-0-8">Oxytocin</span> infusion: acute hyponatraemia, <span class="disease" id="19397503-0-40-48">seizures</span> and coma.
CTD_human
null
null
Negative
MESH:D009410
null
null
Neuronal loss
12257
null
translocator protein
null
28,189,343
Neuronal loss was accompanied by an increase of TREM2, IL-1b, and translocator protein (TSPO) transcript levels, [(11)C]PK11195 binding and GFAP staining (from day 2), and an early and transient increase of TNF-a, Galectin-3, and Iba-1 (from day 1).
null
null
null
null
null
Negative
MESH:D011475
null
null
overall survival
55907
null
CSS
null
28,143,224
Primary outcome measures were 3-year cause-specific (CSS) and overall survival (OS).
null
null
null
1
0
Biomarker
C0003873
Rheumatoid Arthritis
disease
RA
6772
STAT1
Stat1
CTD_human
12,833,524
Immunohistochemistry assigned the Stat1 protein in RA synovial tissue mainly to macrophages and T lymphocytes and the p47phox protein in particular to macrophages.
0.202747
Immunohistochemistry assigned the <span class="gene" id="12833524-8-34-39">Stat1</span> protein in <span class="disease" id="12833524-8-51-53">RA</span> synovial tissue mainly to macrophages and T lymphocytes and the p47phox protein in particular to macrophages.
CTD_human
1
0
Biomarker
C0014859
Esophageal Neoplasms
group
esophageal cancer
7517
XRCC3
XRCC3
CTD_human
21,347,786
In esophageal cancer patients, none of the polymorphisms studied had conclusive results in multivariate analysis, although XRCC3 variant (rs861539) showed an effect on survival in Kaplan-Meier univariate analysis.
0.207496
In <span class="disease" id="21347786-11-3-20">esophageal cancer</span> patients, none of the polymorphisms studied had conclusive results in multivariate analysis, although <span class="gene" id="21347786-11-123-128">XRCC3</span> variant (rs861539) showed an effect on survival in Kaplan-Meier univariate analysis.
CTD_human
20
0
Therapeutic
C0037769
West Syndrome
disease
infantile spasms
5443
POMC
ACTH
CTD_human
20,078,871
Clinical profile and treatment of infantile spasms using vigabatrin and ACTH--a developing country perspective.
0.203022
Clinical profile and treatment of <span class="disease" id="20078871-0-34-50">infantile spasms</span> using vigabatrin and <span class="gene" id="20078871-0-72-76">ACTH</span>--a developing country perspective.
CTD_human
4
3
Biomarker
C0033860
Psoriasis
disease
psoriasis
51752
ERAP1
ERAP1
CTD_human
20,953,190
A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.
0.203571
A genome-wide association study identifies new <span class="disease" id="20953190-0-47-56">psoriasis</span> susceptibility loci and an interaction between HLA-C and <span class="gene" id="20953190-0-114-119">ERAP1</span>.
CTD_human
1
1
Biomarker
C2239176
Liver carcinoma
disease
HCC
6775
STAT4
STAT4
CTD_human
23,242,368
We also found significantly lower mRNA expression of STAT4 in HCC tumor tissues compared with paired adjacent nontumor tissues (P = 2.33 × 10(-14)).
0.203022
We also found significantly lower mRNA expression of <span class="gene" id="23242368-4-53-58">STAT4</span> in <span class="disease" id="23242368-4-62-65">HCC</span> tumor tissues compared with paired adjacent nontumor tissues (P = 2.33 &times; 10(-14)).
CTD_human
1
0
Biomarker
C0018777
Conductive hearing loss
disease
conductive hearing loss
2138
EYA1
Eya1
CTD_human
10,471,511
Eya1 heterozygotes show renal abnormalities and a conductive hearing loss similar to BOR syndrome, whereas Eya1 homozygotes lack ears and kidneys due to defective inductive tissue interactions and apoptotic regression of the organ primordia.
0.400275
<span class="gene" id="10471511-3-0-4">Eya1</span> heterozygotes show renal abnormalities and a <span class="disease" id="10471511-3-50-73">conductive hearing loss</span> similar to BOR syndrome, whereas <span class="gene" id="10471511-3-107-111">Eya1</span> homozygotes lack ears and kidneys due to defective inductive tissue interactions and apoptotic regression of the organ primordia.
CTD_human;HPO
5
11
Biomarker
C0268631
succinic semialdehyde dehydrogenase deficiency
disease
succinic semialdehyde dehydrogenase deficiency
7915
ALDH5A1
ALDH5A1
CTD_human
23,825,041
A novel ALDH5A1 mutation is associated with succinic semialdehyde dehydrogenase deficiency and severe intellectual disability in an Iranian family.
0.682473
A novel <span class="gene" id="23825041-0-8-15">ALDH5A1</span> mutation is associated with <span class="disease" id="23825041-0-44-90">succinic semialdehyde dehydrogenase deficiency</span> and severe intellectual disability in an Iranian family.
CTD_human;ORPHANET;UNIPROT
null
null
Negative
MESH:D001308
null
null
and processing speed
10603
null
A-PS
null
28,083,844
UNASSIGNED: Cognitive impairment (CI), mainly involving attention and processing speed (A-PS), is a common and disabling symptom in multiple sclerosis (MS).
null
null
null
1
0
Biomarker
C0206656
Rhabdomyosarcoma, Embryonal
disease
embryonal rhabdomyosarcoma
4654
MYOD1
MYOD1
CTD_human
24,793,135
A recurrent neomorphic mutation in MYOD1 defines a clinically aggressive subset of embryonal rhabdomyosarcoma associated with PI3K-AKT pathway mutations.
0.201374
A recurrent neomorphic mutation in <span class="gene" id="24793135-0-35-40">MYOD1</span> defines a clinically aggressive subset of <span class="disease" id="24793135-0-83-109">embryonal rhabdomyosarcoma</span> associated with PI3K-AKT pathway mutations.
CTD_human
8
0
Biomarker
C0040028
Thrombocythemia, Essential
disease
essential thrombocythemia
3717
JAK2
JAK2
CTD_human
20,434,300
He was diagnosed with essential thrombocythemia after he tested positive for the JAK2 V617F mutation.
0.63264
He was diagnosed with <span class="disease" id="20434300-5-22-47">essential thrombocythemia</span> after he tested positive for the <span class="gene" id="20434300-5-81-85">JAK2</span> V617F mutation.
CTD_human;ORPHANET
null
null
Negative
MESH:D019446
null
null
endotoxemia
16175
null
IL-1a
null
28,145,460
CGA-JK3 consequently interrupted IKKb-inducible NF-kB activation and NF-kB-regulated expression of TNF-a, IL-1a or HMGB-1 gene, thereby improving TLRs-associated redundant inflammatory responses in endotoxemia, polymicrobial sepsis and ALF.
null
null
null
null
null
Negative
MESH:D005234
null
null
steatosis
12491
null
fat
null
28,115,523
APOC3 neither exacerbated diet-induced adiposity nor aggravated the degree of steatosis in high fructose or high fat-fed APOC3-transgenic mice.
null
null
null
1
0
Biomarker
C0007131
Non-Small Cell Lung Carcinoma
disease
NSCLC
4609
MYC
MYC
CTD_human
24,688,052
Moreover, pathway analysis and knockdown studies suggest a role for MYC transcriptional activity in the expression of these pathways in KRAS-mutant NSCLC cells.
0.205769
Moreover, pathway analysis and knockdown studies suggest a role for <span class="gene" id="24688052-5-68-71">MYC</span> transcriptional activity in the expression of these pathways in KRAS-mutant <span class="disease" id="24688052-5-148-153">NSCLC</span> cells.
CTD_human
null
null
Negative
MESH:D064420
null
null
Cytotoxicity
5595;5594
null
ERK1/2
null
28,062,356
Cytotoxicity, ROS production, and JNK and ERK1/2 kinase signaling increased in a dose and time-dependent manner during ethanol treatments; CYP4F2 gene expression decreased, while other CYP4F forms, namely 4F11 and 12, increased along with 3A4 and 2E1 isoforms.
null
null
null
1
0
Biomarker
C1260899
Anemia, Diamond-Blackfan
disease
Diamond-Blackfan anemia
6218
RPS17
RPS17
CTD_human
17,647,292
Ribosomal protein S17 gene (RPS17) is mutated in Diamond-Blackfan anemia.
0.407338
<span class="gene" id="17647292-0-0-21">Ribosomal protein S17</span> gene (<span class="gene" id="17647292-0-28-33">RPS17</span>) is mutated in <span class="disease" id="17647292-0-49-72">Diamond-Blackfan anemia</span>.
CTD_human;ORPHANET
null
null
Negative
MESH:D002318
null
null
cardiovascular disease
21781
null
DP1
null
28,057,839
Recent randomized clinical trials have demonstrated that addition of niacin with laropiprant [a PGD<sub>2</sub>receptor subtype 1 (DP1) blocker] to statin-based therapies does not significantly decrease the risk of cardiovascular disease events, but increases the risk of serious adverse events.
null
null
null
3
0
Biomarker
C0085261
Proteus Syndrome
disease
Proteus syndrome
5728
PTEN
PTEN
CTD_human
11,748,304
Investigation of other clinically distinct syndromes associated with lipomatosis and overgrowth has established germline and germline mosaic PTEN mutations in several patients with Proteus syndrome.
0.40548
Investigation of other clinically distinct syndromes associated with lipomatosis and overgrowth has established germline and germline mosaic <span class="gene" id="11748304-4-141-145">PTEN</span> mutations in several patients with <span class="disease" id="11748304-4-181-197">Proteus syndrome</span>.
CTD_human;ORPHANET
null
null
Negative
MESH:D017202
null
null
ischemic heart disease
100124433
null
MiR-208b
null
28,065,693
MiR-208b was also upregulated in DCM patients, but not in heart failure patients due to ischemic heart disease or myocarditis.
null
null
null
null
null
Negative
MESH:D018754
null
null
ventricular myocardium
315655
null
RDx
null
28,052,866
MI was associated with an increase in fibrosis of the noninfarcted ventricular myocardium, which was attenuated by RDx.
null
null
null
null
null
Negative
MESH:C565133
null
null
CCL-2
20304
null
CCL-5
null
28,127,293
All the three viruses triggered the infected P815 cells to produce pro-inflammatory cytokines and chemokines including IL-6, IFN-y, TNF-a, CCL-2, CCL-5, and IP-10, but not the antiviral type I interferon.
null
null
null
null
null
Negative
OMIM:168600
null
null
PD-L2
9308
null
CD83
null
28,052,400
Immunohistochemical analysis was used to evaluate the expression of PD-L1, PD-L2, CD1a and CD83 in 61 CSCC tissues.
null
null
null
1
0
Biomarker
C0346255
Oncocytoma, renal
disease
renal oncocytoma
201163
FLCN
folliculin
CTD_human
12,204,536
Discovery of disease-causing mutations in BHD, a novel kidney cancer gene associated with renal oncocytoma or chromophobe renal cancer, will contribute to understanding the role of folliculin in pathways common to skin, lung, and kidney development.
0.200549
Discovery of disease-causing mutations in BHD, a novel kidney cancer gene associated with <span class="disease" id="12204536-6-90-106">renal oncocytoma</span> or chromophobe renal cancer, will contribute to understanding the role of <span class="gene" id="12204536-6-181-191">folliculin</span> in pathways common to skin, lung, and kidney development.
CTD_human
null
null
Negative
MESH:D015212
null
null
bowel dysfunction
51573
null
miR-16
null
28,082,316
In addition, bowel dysfunction, perceived stress and depression and number of mast cells correlated with the expression of hsa-miR-125b-5p and hsa-miR-16 and their respective target proteins.
null
null
null
1
0
Biomarker
C0243050
Cardiovascular Abnormalities
group
cardiovascular abnormalities
203286
ANKS6
ANKS6
CTD_human
23,793,029
We also identify six families with ANKS6 mutations affected by nephronophthisis, including severe cardiovascular abnormalities, liver fibrosis and situs inversus.
0.2
We also identify six families with <span class="gene" id="23793029-5-35-40">ANKS6</span> mutations affected by nephronophthisis, including severe <span class="disease" id="23793029-5-98-126">cardiovascular abnormalities</span>, liver fibrosis and situs inversus.
CTD_human
1
0
Biomarker
C0033774
Pruritus
phenotype
pruritus
3269
HRH1
histamine H1 receptor
CTD_human
19,652,466
We have also investigated the effect of histamine H4 receptor antagonists on histamine H1 receptor antagonist-resistant pruritus using a mouse model.
0.2
We have also investigated the effect of histamine H4 receptor antagonists on <span class="gene" id="19652466-5-77-98">histamine H1 receptor</span> antagonist-resistant <span class="disease" id="19652466-5-120-128">pruritus</span> using a mouse model.
CTD_human
2
0
Biomarker
C2239176
Liver carcinoma
disease
HCC
1869
E2F1
E2f1
CTD_human
15,565,109
Gene expression patterns in HCCs from Myc, E2f1 and Myc E2f1 transgenic mice were most similar to those of the better survival group of human HCCs, whereas the expression patterns in HCCs from Myc Tgfa transgenic mice and in diethylnitrosamine-induced mouse HCCs were most similar to those of the poorer survival group of human HCCs.
0.207418
Gene expression patterns in <span class="disease" id="15565109-5-28-31">HCC</span>s from Myc, <span class="gene" id="15565109-5-43-47">E2f1</span> and Myc <span class="gene" id="15565109-5-56-60">E2f1</span> transgenic mice were most similar to those of the better survival group of human <span class="disease" id="15565109-5-142-145">HCC</span>s, whereas the expression patterns in <span class="disease" id="15565109-5-183-186">HCC</span>s from Myc Tgfa transgenic mice and in diethylnitrosamine-induced mouse <span class="disease" id="15565109-5-258-261">HCC</span>s were most similar to those of the poorer survival group of human <span class="disease" id="15565109-5-328-331">HCC</span>s.
CTD_human
null
null
Negative
MESH:D012183
null
null
TGN
3726
null
AP1
null
28,000,370
Arl5b is physically associated with AP4 and is required for the recruitment of AP4, but not AP1, to the TGN.
null
null
null
2
0
Biomarker
C0024121
Lung Neoplasms
group
lung tumors
6441
SFTPD
surfactant protein D
CTD_human
14,522,914
Serum levels of surfactant protein D are increased in mice with lung tumors.
0.205466
Serum levels of <span class="gene" id="14522914-0-16-36">surfactant protein D</span> are increased in mice with <span class="disease" id="14522914-0-64-75">lung tumors</span>.
CTD_human
2
0
Biomarker
C0001430
Adenoma
group
adenomas
596
BCL2
bcl-2
CTD_human
10,426,811
Collectively, only 8% of preneoplastic foci, 3% of adenomas and 1.5% of carcinomas did not express either bcl-2 or bcl-X(L).
0.207143
Collectively, only 8% of preneoplastic foci, 3% of <span class="disease" id="10426811-10-51-59">adenomas</span> and 1.5% of carcinomas did not express either <span class="gene" id="10426811-10-106-111">bcl-2</span> or bcl-X(L).
CTD_human
null
null
Negative
MESH:D009103
null
null
MS
55079
null
MALDI-TOF
null
28,146,195
The use of MALDI-TOF MS as a rapid and specific method for the microbiological diagnosis is discussed in the following report.
null
null
null
1
0
Biomarker
C0085183
Neoplasms, Second Primary
phenotype
second malignancy
5883
RAD9A
RAD9A
CTD_human
21,991,345
Collectively, our results support the idea that modulation of RAD9A and other cell cycle arrest and DNA repair proteins contribute to the risk of developing a second malignancy in childhood cancer patients.
0.200275
Collectively, our results support the idea that modulation of <span class="gene" id="21991345-9-62-67">RAD9A</span> and other cell cycle arrest and DNA repair proteins contribute to the risk of developing a <span class="disease" id="21991345-9-159-176">second malignancy</span> in childhood cancer patients.
CTD_human
null
null
Negative
MESH:D016510
null
null
angiogenesis
7040;7422
null
TGF-Beta Signalling and VEGF
null
28,028,298
Analysis on the microRNA target genes revealed that most genes targeted by miR-19b and miR-20a involve in TGF-Beta Signalling and VEGF, hypoxia and angiogenesis pathways.
null
null
null
null
null
Negative
MESH:D006331
null
null
cardiac fibrosis
18024
null
NFE2L2
null
28,132,522
Preserving the NFE2L2 activity arrested the mitochondrial and cardiac oxidative stress, cardiac fibrosis, and heart failure in Chagas disease.
null
null
null
null
null
Negative
MESH:D014202
null
null
IS
397061
null
haptoglobin
null
28,149,513
The IS pigs slept the most and displayed less manipulative behaviours on the day of weaning and plasma haptoglobin levels remained low in IS pigs after weaning (P <= 0.01).
null
null
null
29
28
Biomarker
C0018553
Hamartoma Syndrome, Multiple
disease
Cowden syndrome
5728
PTEN
PTEN
CTD_human
11,496,368
PTEN mutation in a family with Cowden syndrome and autism.
0.767443
<span class="gene" id="11496368-0-0-4">PTEN</span> mutation in a family with <span class="disease" id="11496368-0-31-46">Cowden syndrome</span> and autism.
CTD_human;ORPHANET;UNIPROT
1
0
Biomarker
C0027627
Neoplasm Metastasis
phenotype
metastasis
10855
HPSE
HPA
CTD_human
22,240,343
Thus, we conclude that the combination of an anti-HPA antibody and a CTL response in HPA-immunization gene therapy is enough to attenuate tumor growth and metastasis.
0.268741
Thus, we conclude that the combination of an anti-<span class="gene" id="22240343-9-50-53">HPA</span> antibody and a CTL response in <span class="gene" id="22240343-9-85-88">HPA</span>-immunization gene therapy is enough to attenuate tumor growth and <span class="disease" id="22240343-9-155-165">metastasis</span>.
CTD_human
null
null
Negative
OMIM:143470
null
null
hydrogen atom transfer
29943
null
PDI
null
28,191,974
Energetic consideration with the aid of theoretical calculations suggests that the underlying photophysics most probably involves hydrogen atom transfer (HAT) between the DMP-PDI guest and y-CD host via higher excited (n, *) triplet states.
null
null
null
20
0
Biomarker
C0037769
West Syndrome
disease
infantile spasm
5443
POMC
ACTH
CTD_human
6,107,850
[Lethal side effects from ACTH-therapy in infantile spasm (author's transl)].
0.203022
[Lethal side effects from <span class="gene" id="6107850-0-26-30">ACTH</span>-therapy in <span class="disease" id="6107850-0-42-57">infantile spasm</span> (author's transl)].
CTD_human
27
1
Biomarker
C0030567
Parkinson Disease
disease
Parkinson disease
6622
SNCA
alpha-synuclein
CTD_human
15,099,020
Mutation A30P in the alpha-synuclein gene is a cause of familial Parkinson disease.
0.44
Mutation A30P in the <span class="gene" id="15099020-1-21-36">alpha-synuclein</span> gene is a cause of familial <span class="disease" id="15099020-1-65-82">Parkinson disease</span>.
CTD_human
null
null
Negative
MESH:D046728
null
null
atomic force microscope
1000
null
N-cadherin
null
28,008,617
Application of pulling force ( 1 nN) to the N-cadherin-coated beads via an atomic force microscope induced a localized mechanical response from the VSMCs that opposed the pulling.
null
null
null
null
null
Negative
MESH:D043183
null
null
bowel obstruction
5792
null
LAR
null
28,016,806
METHODS: The objectives of this trial are to assess efficacy and toxicities of LAR in ovarian cancer pts with chronic or intermittent bowel obstruction.
null
null
null
null
null
Negative
MESH:D018205
null
null
WAT
24494
null
IL-1b
null
28,077,915
In control rats, a 24 h fast reduced all measured basal cytokines in plasma and visceral WAT, IL-1b and IL-6 in subcutaneous WAT, and IL-6 in intraperitoneal WAT.
null
null
null
null
null
Negative
MESH:D006623
null
null
VHL
5155
null
PDGFb
null
28,143,107
The gene probes chosen for this analysis were; VHL, FHIT, FGFR1/3, PDGFb, PDGFRb, EGFR, MYC and IGH@.
null
null
null
3
1
Biomarker
C0001418
Adenocarcinoma
group
adenocarcinoma
7157
TP53
p53
CTD_human
10,797,276
In adenocarcinoma, p53 mutation, in addition to stage, emerged as a significant predictor of poor cancer-related survival.
0.471775
In <span class="disease" id="10797276-9-3-17">adenocarcinoma</span>, <span class="gene" id="10797276-9-19-22">p53</span> mutation, in addition to stage, emerged as a significant predictor of poor cancer-related survival.
CTD_human
20
0
Therapeutic
C0037769
West Syndrome
disease
infantile spasms
5443
POMC
adrenocorticotropic hormone
CTD_human
1,656,808
The seizures occurred following the suppression of infantile spasms with adrenocorticotropic hormone therapy and disappeared following the cessation of clonazepam administration.
0.203022
The seizures occurred following the suppression of <span class="disease" id="1656808-2-51-67">infantile spasms</span> with <span class="gene" id="1656808-2-73-100">adrenocorticotropic hormone</span> therapy and disappeared following the cessation of clonazepam administration.
CTD_human
1
0
Therapeutic
C0014556
Epilepsy, Temporal Lobe
disease
TLE
1268
CNR1
CB1R
CTD_human
20,498,848
These findings indicate that activation of CB1R present on nerve terminals can suppress recurrent excitation in the dentate gyrus of mice with TLE.
0.2
These findings indicate that activation of <span class="gene" id="20498848-10-43-47">CB1R</span> present on nerve terminals can suppress recurrent excitation in the dentate gyrus of mice with <span class="disease" id="20498848-10-143-146">TLE</span>.
CTD_human
null
null
Negative
MESH:D064420
null
null
toxicities
963084
null
CPT-11
null
28,213,683
CONCLUSIONS: Administration of CPT-11 plus BV to patients with mCRC achieved comparable efficacies with relatively lower toxicities compared with the results of previous studies using FOLFIRI plus BV as second-line therapy.
null
null
null
null
null
Negative
MESH:D020388
null
null
Duchenne muscular dystrophy
13405
null
Dp427
null
28,161,362
Duchenne muscular dystrophy (DMD) is a lethal disease, determined by lack of dystrophin (Dp427), a muscular cytoskeletal protein also expressed by selected neuronal populations.
null
null
null
2
0
Biomarker
C0038220
Status Epilepticus
disease
status epilepticus
2668
GDNF
GDNF
CTD_human
7,854,063
Glial cell-line derived neurotrophic factor (GDNF) mRNA upregulation in striatum and cortical areas after pilocarpine-induced status epilepticus in rats.
0.2
<span class="gene" id="7854063-0-0-43">Glial cell-line derived neurotrophic factor</span> (<span class="gene" id="7854063-0-45-49">GDNF</span>) mRNA upregulation in striatum and cortical areas after pilocarpine-induced <span class="disease" id="7854063-0-126-144">status epilepticus</span> in rats.
CTD_human
1
0
Biomarker
C0025202
melanoma
disease
malignant melanoma
340273
ABCB5
ABCB5
CTD_human
15,899,824
ABCB5-mediated doxorubicin transport and chemoresistance in human malignant melanoma.
0.213144
<span class="gene" id="15899824-0-0-5">ABCB5</span>-mediated doxorubicin transport and chemoresistance in human <span class="disease" id="15899824-0-66-84">malignant melanoma</span>.
CTD_human
null
null
Negative
MESH:D017096
null
null
prion diseases
19122
null
prion protein
null
28,178,353
UNASSIGNED: Misfolding of the cellular prion protein (PrPC) into the scrapie prion protein (PrPSc) results in progressive, fatal, transmissible neurodegenerative conditions termed prion diseases.
null
null
null
null
null
Negative
MESH:D065666
null
null
AMI
65029
null
diamine oxidase
null
28,156,218
The aim of this study was to measure the plasma levels of diamine oxidase (DAO) and citrulline in AMI to gain insight into its early diagnosis.
null
null
null