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what were the er, pr, and her-2/neu status of the tumor? A. the slide does not mention it. B. the tumor was er-negative, pr-positive, and her-2/neu-positive. C. the tumor was er-positive, pr-positive, and her-2/neu-negative. D. the tumor was er-positive, pr-positive, and her-2/neu-positive.
A. the slide does not mention it.
TCGA-A2-A0SY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0SY-01Z-00-DX1.279A5479-E183-4F79-AF40-50BF1834BA4A_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0SY-01Z-00-DX1.279A5479-E183-4F79-AF40-50BF1834BA4A_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0SY-01Z-00-DX1.279A5479-E183-4F79-AF40-50BF1834BA4A_1_1024.npy
what did the non-neoplastic breast tissue exhibit? A. ductal carcinoma in situ. B. fibrocystic changes. C. inflammatory breast disease. D. lobular carcinoma in situ.
B. fibrocystic changes.
TCGA-A2-A0SY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0SY-01Z-00-DX1.279A5479-E183-4F79-AF40-50BF1834BA4A_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0SY-01Z-00-DX1.279A5479-E183-4F79-AF40-50BF1834BA4A_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0SY-01Z-00-DX1.279A5479-E183-4F79-AF40-50BF1834BA4A_1_1024.npy
what type of carcinoma is found in the breast tissue biopsy? A. invasive lobular carcinoma B. invasive ductal carcinoma C. mucinous carcinoma D. medullary carcinoma
B. invasive ductal carcinoma
TCGA-E2-A56Z-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_1024.npy
what is the nuclear grade of the tumor? A. 1 B. 2 C. 3 D. 4
C. 3
TCGA-E2-A56Z-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_1024.npy
what are the results of immunohistochemistry/special stains? A. positive for cytokeratin ae1 and negative for s-100 B. positive for cytokeratin 7 and negative for s-100 C. positive for p63 and negative for alp D. positive for alp and negative for p63
A. positive for cytokeratin ae1 and negative for s-100
TCGA-E2-A56Z-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_1024.npy
what is the er status of the patient? A. positive B. negative C. unknown D. indeterminate
A. positive
TCGA-E2-A56Z-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E2-A56Z-01Z-00-DX1.EC28E279-B869-4485-A19F-C732D4CCD374_1_1024.npy
what type of surgery did the patient receive? A. lumpectomy B. modified radical mastectomy C. simple mastectomy D. none of the above
B. modified radical mastectomy
TCGA-A2-A4RY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_0_1024.npy
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what other condition did the patient have besides breast cancer? A. lung cancer B. ovarian cancer C. benign mammary dysplasia D. none of the above
C. benign mammary dysplasia
TCGA-A2-A4RY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_1_1024.npy
what was the size of the removed breast tissue? A. not mentioned in the slide B. large C. small D. medium
A. not mentioned in the slide
TCGA-A2-A4RY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_1_1024.npy
were any masses found in the removed breast tissue? A. yes B. no C. cannot be determined D. not mentioned in the slide
B. no
TCGA-A2-A4RY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A4RY-01Z-00-DX1.143E32FC-E10F-4590-9C72-32094B24EF8C_0_1024.npy
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what staining is being performed and the results are pending? A. estrogen receptor, progesterone receptor, and her-2/neu B. cd4, cd8, and cd20 C. ki-67, brca1, and tp53 D. vegf, egfr, and alk
A. estrogen receptor, progesterone receptor, and her-2/neu
TCGA-BH-A0BF-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0BF-01Z-00-DX1.934DF984-9054-4B20-B85B-9CF94B8DC3D4_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0BF-01Z-00-DX1.934DF984-9054-4B20-B85B-9CF94B8DC3D4_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0BF-01Z-00-DX1.934DF984-9054-4B20-B85B-9CF94B8DC3D4_1_1024.npy
was there any change identified upon re-reviewing the original frozen section slide? A. yes, there were significant diagnostic changes B. no, there were no diagnostic changes C. yes, there were minor diagnostic changes D. no, a re-review was not performed
B. no, there were no diagnostic changes
TCGA-BH-A0BF-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0BF-01Z-00-DX1.934DF984-9054-4B20-B85B-9CF94B8DC3D4_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0BF-01Z-00-DX1.934DF984-9054-4B20-B85B-9CF94B8DC3D4_1_1024.npy
what is the nottingham histologic score based on? A. tubule formation, nuclear pleomorphism, and mitotic count B. margins and tumor extent C. er and pr status D. lymph node involvement
A. tubule formation, nuclear pleomorphism, and mitotic count
TCGA-E9-A3X8-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_1_1024.npy
what are the results for er and pr? A. positive for er and pr B. negative for er and pr C. er status not specified D. pr status not specified
B. negative for er and pr
TCGA-E9-A3X8-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_0_1024.npy
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is there any extracapsular invasion slideed? A. yes B. no C. not specified D. cannot be determined
B. no
TCGA-E9-A3X8-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_1_1024.npy
was there any neo-adjuvant treatment given? A. yes B. no C. not specified D. cannot be determined
C. not specified
TCGA-E9-A3X8-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A3X8-01Z-00-DX1.D1532F80-F5F8-47AF-8A1B-B59E345F5D70_1_1024.npy
are there any distant metastasis? A. present B. absent C. not mentioned D. unknown
A. present
TCGA-A7-A426-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A426-01Z-00-DX1.3058E873-9442-4872-80DA-E8A5B35054D2_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A426-01Z-00-DX1.3058E873-9442-4872-80DA-E8A5B35054D2_1_1024.npy
what is the grade of the invasive lobular carcinoma in the breast? A. grade 1 B. grade 2 C. grade 3 D. not mentioned
C. grade 3
TCGA-A7-A426-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A426-01Z-00-DX1.3058E873-9442-4872-80DA-E8A5B35054D2_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A426-01Z-00-DX1.3058E873-9442-4872-80DA-E8A5B35054D2_1_1024.npy
was there evidence of multifocality in the tumor? A. yes B. no C. not mentioned D. not applicable
B. no
TCGA-B6-A0IM-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976_1_1024.npy
was lymphatic/vascular invasion observed in the surgical margins? A. yes B. no C. not mentioned D. not applicable
B. no
TCGA-B6-A0IM-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976_1_1024.npy
what type of carcinoma did the patient have? A. ductal B. lobular C. mucinous D. not mentioned
A. ductal
TCGA-B6-A0IM-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-B6-A0IM-01Z-00-DX1.E2CBD42F-D933-4446-BE7C-C2F8B5AFB976_0_1024.npy
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what does the pathological slide indicate? A. the presence of benign breast cysts B. the presence of non-invasive breast cancer C. the presence of invasive breast cancer D. the absence of breast cancer
C. the presence of invasive breast cancer
TCGA-AO-A12A-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_0_1024.npy
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what will be conducted to determine the extent of the cancer and formulate a treatment plan? A. genetic testing B. radiation therapy C. surgical removal of the tumor D. further testing and assessments
D. further testing and assessments
TCGA-AO-A12A-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_0_1024.npy
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/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_1024.npy
what is the most likely type of breast cancer indicated by the slide? A. ductal carcinoma in situ B. inflammatory breast cancer C. lobular carcinoma D. fibroadenoma
C. lobular carcinoma
TCGA-AO-A12A-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_1024.npy
what is the next step after determining the extent of the cancer? A. immediate surgery B. chemotherapy C. lifestyle changes D. formulating a treatment plan
D. formulating a treatment plan
TCGA-AO-A12A-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_1024.npy
what does the slide not mention about the breast cancer? A. the size of the tumor B. the likelihood of metastasis C. the presence of hormone receptors D. the stage of the cancer
B. the likelihood of metastasis
TCGA-AO-A12A-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A12A-01Z-00-DX1.4E9609A7-9AAD-40A8-8344-8369DF998006_1_1024.npy
what is the purpose of the surgical pathology slide? A. to describe the patient's symptoms B. to analyze the tumor and normal tissue C. to determine if the patient has breast cancer D. to document the surgical procedures performed on the patient
B. to analyze the tumor and normal tissue
TCGA-AC-A3W5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_1024.npy
what specimens were received for examination? A. lymph nodes and breast tissue B. blood and urine samples C. skin and bone tissue D. lung and liver tissue
A. lymph nodes and breast tissue
TCGA-AC-A3W5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_1024.npy
what is the condition of the breast lumpectomy specimen? A. black and soft B. white and indurated C. red and swollen D. yellow and flaky
B. white and indurated
TCGA-AC-A3W5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_1024.npy
what does the slide mention about additional mass lesions or nodules? A. they were present in the breast lumpectomy specimen B. they were absent in the breast lumpectomy specimen C. they were found in the lymph nodes D. they were detected in the normal tissue
B. they were absent in the breast lumpectomy specimen
TCGA-AC-A3W5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_1024.npy
what is the purpose of providing representative sections of the tumor and normal tissue? A. to determine the patient's prognosis B. to identify any metastases C. to compare the texture of the tissues D. to perform genetic testing on the tissues
B. to identify any metastases
TCGA-AC-A3W5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_1024.npy
what measurements and margins are described in the gross examination? A. depth and weight B. color and texture C. width and height D. length and breadth
C. width and height
TCGA-AC-A3W5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W5-01Z-00-DX1.522F702C-776E-45F1-84D3-1648DF04137C_1_1024.npy
what was the final diagnosis of the patient? A. ductal carcinoma B. invasive lobular carcinoma C. inflammatory carcinoma D. adenoid cystic carcinoma
A. ductal carcinoma
TCGA-BH-A18M-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_1024.npy
what is the ratio of her-2/neu signals to chromosome 17 centromere signals? A. 0.82 B. 1.52 C. 2.09 D. 2.77
C. 2.09
TCGA-BH-A18M-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_1024.npy
what is the interpretation of the estrogen receptor assay? A. positive B. negative C. borderline positive D. not mentioned
A. positive
TCGA-BH-A18M-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_1024.npy
what is the interpretation of the progesterone receptor assay? A. positive B. negative C. borderline positive D. not mentioned
C. borderline positive
TCGA-BH-A18M-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_1024.npy
what is the interpretation of her-2/neu staining? A. positive B. negative C. nearly positive D. not mentioned
C. nearly positive
TCGA-BH-A18M-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_1024.npy
what type of surgical procedure was performed? A. left nodal radical mastectomy B. sentinel lymph node biopsy C. lumpectomy D. total mastectomy
A. left nodal radical mastectomy
TCGA-BH-A18M-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A18M-01Z-00-DX1.56E6935A-62CB-4CBE-BDCA-60DA56422CE0_1_1024.npy
what is the age of the patient? A. 30 B. 45 C. not stated D. 60
C. not stated
TCGA-A2-A0EU-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_1024.npy
what is the nottingham grade of the tumor? A. ii/iii B. i/iii C. iii/iii D. iii/ii
C. iii/iii
TCGA-A2-A0EU-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_1024.npy
what is the diagnosis of the sentinel node? A. positive for metastatic carcinoma B. negative for metastatic carcinoma C. necrotic D. infiltrating ductal carcinoma
B. negative for metastatic carcinoma
TCGA-A2-A0EU-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_1024.npy
what is the her2 neu status? A. positive B. negative C. not stated D. both a and b
B. negative
TCGA-A2-A0EU-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_1024.npy
what is the pathologic stage? A. pt1c no mx B. pt1b no mx C. pt2 no mx D. pt3 no mx
A. pt1c no mx
TCGA-A2-A0EU-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EU-01Z-00-DX1.13335BEB-63D4-469B-A389-8A079A096129_1_1024.npy
what condition did the patient have in their breast? A. well-differentiated invasive ductal carcinoma B. poorly differentiated invasive ductal carcinoma C. ductal carcinoma in situ (dcis) D. high-grade lymphovascular invasion
C. ductal carcinoma in situ (dcis)
TCGA-GM-A2DD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_1_1024.npy
what is the status of the progesterone receptor? A. low positive B. positive C. negative D. requires further evaluation
C. negative
TCGA-GM-A2DD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_1_1024.npy
what additional testing is required? A. estrogen receptor testing B. her-2/neu testing C. progesterone receptor testing D. immunohistochemistry testing
B. her-2/neu testing
TCGA-GM-A2DD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-GM-A2DD-01Z-00-DX1.01332FF3-7488-41B7-A515-7841715DE92B_1_1024.npy
was there any vessel invasion identified? A. yes B. no C. not specified D. inconclusive
B. no
TCGA-A7-A4SD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_1024.npy
was ductal carcinoma in situ identified in the specimen? A. yes B. no C. not specified D. inconclusive
B. no
TCGA-A7-A4SD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_1024.npy
what was the grade of the infiltrating ductal carcinoma? A. grade 3 B. grade 1 C. grade 2 D. grade 4
A. grade 3
TCGA-A7-A4SD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_1024.npy
what is the status of the surgical margins? A. negative but close B. negative C. positive D. inconclusive
A. negative but close
TCGA-A7-A4SD-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SD-01Z-00-DX1.677152B3-17B2-42DB-AEEC-C9509ACCE831_1_1024.npy
what is the nottingham score of the patient's tumor? A. 8/9 B. 9/9 C. 7/9 D. 6/9
A. 8/9
TCGA-BH-A0C1-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_1_1024.npy
what type of carcinoma is found in the patient's breast? A. infiltrating ductal carcinoma B. infiltrating lobular carcinoma C. ductal carcinoma in situ D. pleomorphic carcinoma
B. infiltrating lobular carcinoma
TCGA-BH-A0C1-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_1_1024.npy
how many quadrants of the breast does the tumor occupy? A. one quadrant B. two quadrants C. three quadrants D. four quadrants
D. four quadrants
TCGA-BH-A0C1-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0C1-01Z-00-DX1.21FE357E-B182-4397-BFEF-7E96E994236A_1_1024.npy
what is the type of cancer found in the patient's breast? A. ovarian cancer B. infiltrative ductal carcinoma C. leukemia D. lung cancer
B. infiltrative ductal carcinoma
TCGA-AN-A0G0-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_1024.npy
what is the histological description of the tumor? A. benign tumor B. malignant tumor C. fibroadenoma D. hemangioma
B. malignant tumor
TCGA-AN-A0G0-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_1024.npy
what is the grade of the tumor? A. grade 1 B. grade 2 C. grade 3 D. grade 4
C. grade 3
TCGA-AN-A0G0-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_1024.npy
what is the stage of the tumor? A. stage 1 B. stage 2 C. stage 3 D. stage 4
B. stage 2
TCGA-AN-A0G0-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0G0-01Z-00-DX1.BE0BB5DF-DEDA-48D8-B5D8-2735C767F28F_1_1024.npy
what is the grade of the infiltrating ductal carcinoma? A. nottingham grade i B. nottingham grade ii C. nottingham grade iii D. nottingham grade iv
C. nottingham grade iii
TCGA-AR-A0TT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_1024.npy
how many sentinel nodes were positive for metastatic carcinoma? A. 1 B. 3 C. 5 D. 7
B. 3
TCGA-AR-A0TT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_1024.npy
was ductal carcinoma in situ present in the pathology slide? A. yes B. no C. not mentioned D. unclear
B. no
TCGA-AR-A0TT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_1024.npy
what type of changes were observed in the surrounding non-neoplastic breast tissue? A. proliferative fibrocystic changes B. atypical hyperplasia C. nonproliferative fibrocystic changes D. inflammatory changes
C. nonproliferative fibrocystic changes
TCGA-AR-A0TT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AR-A0TT-01Z-00-DX1.127C2A4F-62AC-4E83-99DB-13519BD2949D_1_1024.npy
what is the nottingham score for the tumor? A. 7 B. 9 C. 4 D. 6
B. 9
TCGA-BH-A0H9-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_1024.npy
what is the er status of the invasive carcinoma? A. negative B. positive C. indeterminate D. weakly positive
B. positive
TCGA-BH-A0H9-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_1024.npy
are the surgical margins involved by the invasive or in situ components? A. yes B. no C. cannot be determined D. partially involved
B. no
TCGA-BH-A0H9-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_1024.npy
is there lymphovascular invasion noted? A. yes B. no C. cannot be determined D. not applicable
B. no
TCGA-BH-A0H9-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-BH-A0H9-01Z-00-DX1.8AE869C6-5C78-4D52-AC8B-5B6FD5FD91AA_1_1024.npy
what is the grade classification of the adenocarcinoma? A. g-1 B. g-3 C. g-4 D. g-2
D. g-2
TCGA-E9-A5UP-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_1_1024.npy
is there evidence of venous invasion? A. yes B. no C. cannot be determined D. unspecified
B. no
TCGA-E9-A5UP-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_1_1024.npy
what is the overall diagnosis of the breast adenocarcinoma? A. poorly differentiated infiltrating papillary adenocarcinoma B. well-differentiated infiltrating papillary adenocarcinoma C. moderately differentiated infiltrating papillary adenocarcinoma D. not determined or specified
C. moderately differentiated infiltrating papillary adenocarcinoma
TCGA-E9-A5UP-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A5UP-01Z-00-DX1.135466CC-601C-48B2-935D-42F8D7C4CDF7_1_1024.npy
what histologic grade is assigned to the invasive ductal carcinoma? A. nhg1 (1 + 1 + 1) B. nhg2 (2 + 2 + 2) C. nhg3 (3 + 2 + 3) D. nhg4 (4 + 3 + 3)
C. nhg3 (3 + 2 + 3)
TCGA-D8-A1Y1-01Z-00-DX2
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_1024.npy
how many mitoses were observed per 10 high power fields? A. 10 B. 20 C. 30 D. 35
D. 35
TCGA-D8-A1Y1-01Z-00-DX2
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_1024.npy
what type of lesions were found in the glandular tissue? A. adenocarcinoma B. fibroadenoma C. mastitis D. mastopathia fibrosa et cystica
D. mastopathia fibrosa et cystica
TCGA-D8-A1Y1-01Z-00-DX2
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_1024.npy
what was the her2 protein status in the invasive cancerous cells? A. positive B. negative C. indeterminate D. not mentioned
B. negative
TCGA-D8-A1Y1-01Z-00-DX2
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-D8-A1Y1-01Z-00-DX2.B58DC955-F864-4E78-8B1A-8156E2F7D554_1_1024.npy
what is the diagnosis of the patient's breast tumor? A. infiltrative ductal carcinoma B. medullary carcinoma C. ductal carcinoma in situ D. lobular carcinoma
A. infiltrative ductal carcinoma
TCGA-AN-A0FK-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_1024.npy
what is the grade of the tumor? A. grade 1 B. grade 2 C. grade 3 D. grade 4
B. grade 2
TCGA-AN-A0FK-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_1024.npy
is there evidence of cancer spread to other parts of the body? A. yes B. no C. insufficient information D. unknown
B. no
TCGA-AN-A0FK-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_1024.npy
has the patient undergone any treatment yet? A. yes B. no C. insufficient information D. unknown
B. no
TCGA-AN-A0FK-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_1024.npy
what type of blood sample was taken from the patient? A. abnormal blood sample B. infected blood sample C. normal blood sample D. diseased blood sample
C. normal blood sample
TCGA-AN-A0FK-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0FK-01Z-00-DX1.8966A1D5-CE3A-4B08-A1F6-E613BEB1ABD1_1_1024.npy
what is the grade of the breast cancer specimen? A. grade 1 B. grade 2 C. grade 3 D. grade 4
B. grade 2
TCGA-AN-A0XT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_1024.npy
what is the stage of the breast cancer according to the tnm staging system? A. stage 0 B. stage 1a C. stage 2 D. stage 3
B. stage 1a
TCGA-AN-A0XT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_1024.npy
what type of carcinoma is present in the breast cancer specimen? A. infiltrative lobular carcinoma B. ductal carcinoma in situ C. inflammatory carcinoma D. infiltrative ductal carcinoma
D. infiltrative ductal carcinoma
TCGA-AN-A0XT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_1024.npy
what treatment has the patient received so far? A. surgery B. chemotherapy C. radiation therapy D. no treatment
D. no treatment
TCGA-AN-A0XT-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AN-A0XT-01Z-00-DX1.882AF4CE-62A1-4808-9B4B-780066E5E602_1_1024.npy
what is the diagnosis of leona's condition? A. adenocarcinoma B. invasive carcinoma C. squamous cell carcinoma D. benign tumor
B. invasive carcinoma
TCGA-AO-A0JC-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_1_1024.npy
what is the result of the cytokeratin test? A. negative B. positive C. inconclusive D. not mentioned
B. positive
TCGA-AO-A0JC-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_1_1024.npy
which surgical procedure is suggested for treatment? A. chemotherapy B. radiation therapy C. partial mastectomy D. moderate radical mastectomy
D. moderate radical mastectomy
TCGA-AO-A0JC-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AO-A0JC-01Z-00-DX1.C8DD421B-9799-4FE7-9224-5EAC6ED1028E_1_1024.npy
what was the histological type of carcinoma? A. squamous cell carcinoma B. adenocarcinoma C. small cell carcinoma D. transitional cell carcinoma
B. adenocarcinoma
TCGA-A2-A0EO-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_1_1024.npy
was lymphovascular invasion observed in the pathological slide? A. yes B. no C. not mentioned D. insufficient information
B. no
TCGA-A2-A0EO-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_1_1024.npy
what is the histological grade of the tumor? A. high grade B. low grade C. intermediate grade D. undifferentiated
C. intermediate grade
TCGA-A2-A0EO-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A2-A0EO-01Z-00-DX1.D7A09E23-2CAB-4B3B-814C-BF0BA75B7589_1_1024.npy
what type of carcinoma was detected in the excisional biopsy of the breast? A. infiltrating lobular carcinoma B. ductal carcinoma in situ C. invasive ductal carcinoma D. inflammatory breast carcinoma
C. invasive ductal carcinoma
TCGA-A7-A4SF-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_1024.npy
what was the histologic grade of the invasive carcinoma? A. grade 1 B. grade 2 C. grade 3 D. grade 4
B. grade 2
TCGA-A7-A4SF-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_1024.npy
what did immunostaining confirm about the margins of the specimen? A. presence of lobular carcinoma B. presence of invasive carcinoma C. absence of invasive carcinoma D. absence of ductal carcinoma in situ
B. presence of invasive carcinoma
TCGA-A7-A4SF-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_1024.npy
what was specified about the prognostic markers in the slide? A. they were positive B. they were negative C. they were not specified D. they were inconclusive
C. they were not specified
TCGA-A7-A4SF-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-A7-A4SF-01Z-00-DX1.CDCFD4BC-4363-4CF2-95F5-4922E04C3B9D_1_1024.npy
what were the resection margins of the lumpectomy? A. positive B. negative C. unclear D. not mentioned
B. negative
TCGA-EW-A1OY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_1024.npy
which hormone receptors were positive in the tumor? A. estrogen receptor (er) and progesterone receptor (pr) B. human epidermal growth factor receptor 2 (her2) C. insulin receptor D. thyroid receptor
A. estrogen receptor (er) and progesterone receptor (pr)
TCGA-EW-A1OY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_1024.npy
what is the histologic grade of the invasive ductal carcinoma? A. grade i B. grade ii C. grade iii D. grade iv
C. grade iii
TCGA-EW-A1OY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_1024.npy
what was the result of the keratin immunostain? A. positive for carcinoma B. negative for carcinoma C. unclear D. not mentioned
B. negative for carcinoma
TCGA-EW-A1OY-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-EW-A1OY-01Z-00-DX1.42AF5C9A-A90F-4A58-B5D4-B615F8CD4333_1_1024.npy
what were the margins of the surgical resection? A. positive for cancer B. negative for cancer C. close but not clear D. inconclusive
B. negative for cancer
TCGA-AC-A3W7-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_1_1024.npy
what is the tumor staging of the primary tumor? A. pt0 B. pt1 C. pt2 D. pt3
C. pt2
TCGA-AC-A3W7-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_1_1024.npy
what is the receptor status for the estrogen, progesterone, and her2/neu receptors? A. positive estrogen receptors, positive progesterone receptors, negative her2/neu status B. negative estrogen receptors, positive progesterone receptors, negative her2/neu status C. positive estrogen receptors, negative progesterone receptors, positive her2/neu status D. negative estrogen receptors, negative progesterone receptors, positive her2/neu status
C. positive estrogen receptors, negative progesterone receptors, positive her2/neu status
TCGA-AC-A3W7-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-AC-A3W7-01Z-00-DX1.189BB448-ECBA-4042-8A35-4B787271E8FE_1_1024.npy
what was the diagnosis of the tumor? A. infiltrating ductal carcinoma, moderately differentiated B. inflammatory breast cancer C. fibroadenoma D. ductal carcinoma in situ
A. infiltrating ductal carcinoma, moderately differentiated
TCGA-E9-A1R5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A1R5-01Z-00-DX1.b870d5eb-6259-4b49-86e4-569a9e32ecd5_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A1R5-01Z-00-DX1.b870d5eb-6259-4b49-86e4-569a9e32ecd5_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A1R5-01Z-00-DX1.b870d5eb-6259-4b49-86e4-569a9e32ecd5_1_1024.npy
what was the nottingham score? A. not mentioned in the slide B. high grade C. low grade D. moderate grade
A. not mentioned in the slide
TCGA-E9-A1R5-01Z-00-DX1
TCGA-BRCA
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A1R5-01Z-00-DX1.b870d5eb-6259-4b49-86e4-569a9e32ecd5_0_1024.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A1R5-01Z-00-DX1.b870d5eb-6259-4b49-86e4-569a9e32ecd5_1_512.npy
/bask/projects/p/phwq4930-renal-canc/Zeyu/WSI_Dataset/Conch/TCGA-BR/TCGA-E9-A1R5-01Z-00-DX1.b870d5eb-6259-4b49-86e4-569a9e32ecd5_1_1024.npy