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17615540
[ "PURPOSE:", "To", "undertake", "mutation", "screening", "in", "the", "connexin", "46", "(GJA3)", "gene", "in", "seven", "congenital", "cataract", "families", "of", "Indian", "origin.", "METHODS:", "Seven", "Indian", "families", "with", "congenital", "cataract", "were", "analyzed", "by", "detailed", "family", "history", "and", "clinical", "evaluation.", "Each", "family", "had", "two", "to", "five", "affected", "members.", "Mutation", "screening", "was", "carried", "out", "in", "the", "candidate", "gene,", "connexin", "46", "(GJA3),", "using", "bidirectional", "sequencing", "of", "amplified", "products.", "Segregation", "of", "the", "observed", "change", "with", "the", "disease", "phenotype", "was", "further", "tested", "by", "restriction", "fragment", "length", "polymorphism", "(RFLP).", "RESULTS:", "Sequencing", "of", "the", "coding", "region", "of", "GJA3", "showed", "the", "presence", "of", "a", "novel,", "heterozygous", "C260T", " ", "change", "in", "one", "family", "(CC-472)", "who", "had", "two", "affected", "members.", "The", "cataract", "phenotype", "gave", "the", "appearance", "like", "a", "\"pearl", "box\"", "in", "these", "two", "affected", "individuals", "of", "this", "family.", "The", "observed", "C260T", " ", "substitution", "created", "a", "novel", "restriction", "enzyme", "site", "for", "NlaIII", "and", "resulted", "in", "substitution", "of", "highly", "conserved", "threonine", "at", "position", "87", "by", "methionine", "(", "T87M", ").", "NlaIII", "restriction", "digestion", "analysis", "revealed", "this", "nucleotide", "change", "was", "not", "in", "unaffected", "members", "of", "this", "family", "or", "in", "100", "unrelated", "control", "subjects", "(200", "chromosomes)", "with", "the", "same", "ethnic", "background.", "CONCLUSIONS:", "This", "is", "a", "novel", "mutation", "identified", "in", "the", "second", "transmembrane", "domain", "of", "the", "connexin", "46.", "These", "findings", "thus", "expand", "the", "mutation", "spectrum", "of", "the", "GJA3", "in", "association", "with", "congenital", "cataract." ]
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PURPOSE: To undertake mutation screening in the connexin 46 (GJA3) gene in seven congenital cataract families of Indian origin. METHODS: Seven Indian families with congenital cataract were analyzed by detailed family history and clinical evaluation. Each family had two to five affected members. Mutation screening was carried out in the candidate gene, connexin 46 (GJA3), using bidirectional sequencing of amplified products. Segregation of the observed change with the disease phenotype was further tested by restriction fragment length polymorphism (RFLP). RESULTS: Sequencing of the coding region of GJA3 showed the presence of a novel, heterozygous C260T change in one family (CC-472) who had two affected members. The cataract phenotype gave the appearance like a "pearl box" in these two affected individuals of this family. The observed C260T substitution created a novel restriction enzyme site for NlaIII and resulted in substitution of highly conserved threonine at position 87 by methionine ( T87M ). NlaIII restriction digestion analysis revealed this nucleotide change was not in unaffected members of this family or in 100 unrelated control subjects (200 chromosomes) with the same ethnic background. CONCLUSIONS: This is a novel mutation identified in the second transmembrane domain of the connexin 46. These findings thus expand the mutation spectrum of the GJA3 in association with congenital cataract.
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16723031
[ "BACKGROUND:", "Accumulative", "evidence", "suggests", "that", "low", "folate", "intake", "is", "associated", "with", "increased", "risk", "of", "breast", "cancer.", "Polymorphisms", "in", "genes", "involved", "in", "folate", "metabolism", "may", "influence", "DNA", "methylation,", "nucleotide", "synthesis,", "and", "thus", "individual", "susceptibility", "to", "cancer.", "Thymidylate", "synthase", "(TYMS)", "is", "a", "key", "enzyme", "that", "participates", "in", "folate", "metabolism", "and", "catalyzes", "the", "conversion", "of", "dUMP", "to", "dTMP", "in", "the", "process", "of", "DNA", "synthesis.", "Two", "potentially", "functional", "polymorphisms", "[a", "28-bp", "tandem", "repeat", "in", "the", "TYMS", "5'-untranslated", "enhanced", "region", "(TSER)", "and", "a", "6-bp", "deletion/insertion", "in", "the", "TYMS", "3'-untranslated", "region", "(TS", "3'-UTR)]", "were", "suggested", "to", "be", "correlated", "with", "alteration", "of", "thymidylate", "synthase", "expression", "and", "associated", "with", "cancer", "risk.", "METHODS:", "To", "test", "the", "hypothesis", "that", "polymorphisms", "of", "the", "TYMS", "gene", "are", "associated", "with", "risk", "of", "breast", "cancer,", "we", "genotyped", "these", "two", "polymorphisms", "in", "a", "case-control", "study", "of", "432", "incident", "cases", "with", "invasive", "breast", "cancer", "and", "473", "cancer-free", "controls", "in", "a", "Chinese", "population.", "RESULTS:", "We", "found", "that", "the", "distribution", "of", "TS3'-UTR", "(", "1494del6", ")", "genotype", "frequencies", "were", "significantly", "different", "between", "the", "cases", "and", "controls", "(P", "=", "0.026).", "Compared", "with", "the", "TS3'-UTR", "del6/del6", "wild-type", "genotype,", "a", "significantly", "reduced", "risk", "was", "associated", "with", "the", "ins6/ins6", "homozygous", "variant", "genotype", "(adjusted", "OR", "=", "0.58,", "95%", "CI", "=", "0.35-0.97)", "but", "not", "the", "del6/ins6", "genotype", "(OR", "=", "1.09,", "95%", "CI", "=", "0.82-1.46).", "Furthermore,", "breast", "cancer", "risks", "associated", "with", "the", "TS3'-UTR", "del6/del6", "genotype", "were", "more", "evident", "in", "older", "women,", "postmenopausal", "subjects,", "individuals", "with", "a", "younger", "age", "at", "first-live", "birth", "and", "individuals", "with", "an", "older", "age", "at", "menarche.", "However,", "there", "was", "no", "evidence", "for", "an", "association", "between", "the", "TSER", "polymorphism", "and", "breast", "cancer", "risks.", "CONCLUSION:", "These", "findings", "suggest", "that", "the", "TS3'-UTR", "del6", "polymorphism", "may", "play", "a", "role", "in", "the", "etiology", "of", "breast", "cancer.", "Further", "larger", "population-based", "studies", "as", "well", "as", "functional", "evaluation", "of", "the", "variants", "are", "warranted", "to", "confirm", "our", "findings." ]
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BACKGROUND: Accumulative evidence suggests that low folate intake is associated with increased risk of breast cancer. Polymorphisms in genes involved in folate metabolism may influence DNA methylation, nucleotide synthesis, and thus individual susceptibility to cancer. Thymidylate synthase (TYMS) is a key enzyme that participates in folate metabolism and catalyzes the conversion of dUMP to dTMP in the process of DNA synthesis. Two potentially functional polymorphisms [a 28-bp tandem repeat in the TYMS 5'-untranslated enhanced region (TSER) and a 6-bp deletion/insertion in the TYMS 3'-untranslated region (TS 3'-UTR)] were suggested to be correlated with alteration of thymidylate synthase expression and associated with cancer risk. METHODS: To test the hypothesis that polymorphisms of the TYMS gene are associated with risk of breast cancer, we genotyped these two polymorphisms in a case-control study of 432 incident cases with invasive breast cancer and 473 cancer-free controls in a Chinese population. RESULTS: We found that the distribution of TS3'-UTR ( 1494del6 ) genotype frequencies were significantly different between the cases and controls (P = 0.026). Compared with the TS3'-UTR del6/del6 wild-type genotype, a significantly reduced risk was associated with the ins6/ins6 homozygous variant genotype (adjusted OR = 0.58, 95% CI = 0.35-0.97) but not the del6/ins6 genotype (OR = 1.09, 95% CI = 0.82-1.46). Furthermore, breast cancer risks associated with the TS3'-UTR del6/del6 genotype were more evident in older women, postmenopausal subjects, individuals with a younger age at first-live birth and individuals with an older age at menarche. However, there was no evidence for an association between the TSER polymorphism and breast cancer risks. CONCLUSION: These findings suggest that the TS3'-UTR del6 polymorphism may play a role in the etiology of breast cancer. Further larger population-based studies as well as functional evaluation of the variants are warranted to confirm our findings.
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17951029
[ "BACKGROUND:", "Focal", "dermal", "hypoplasia", "(FDH)", "(OMIM", "305600)", "is", "an", "X-linked", "dominant", "disorder", "of", "ecto-mesodermal", "development.", "Also", "known", "as", "Goltz", "syndrome,", "FDH", "presents", "with", "characteristic", "linear", "streaks", "of", "hypoplastic", "dermis", "and", "variable", "abnormalities", "of", "bone,", "nails,", "hair,", "limbs,", "teeth", "and", "eyes.", "The", "molecular", "basis", "of", "FDH", "involves", "mutations", "in", "the", "PORCN", "gene,", "which", "encodes", "an", "enzyme", "that", "allows", "membrane", "targeting", "and", "secretion", "of", "several", "Wnt", "proteins", "critical", "for", "normal", "tissue", "development.", "OBJECTIVES:", "To", "investigate", "the", "molecular", "basis", "of", "FDH", "in", "a", "2-year-old", "Thai", "girl", "who", "presented", "at", "birth", "with", "depressed,", "pale", "linear", "scars", "on", "the", "trunk", "and", "limbs,", "sparse", "brittle", "hair,", "syndactyly", "of", "the", "right", "middle", "and", "ring", "fingers,", "dental", "caries", "and", "radiological", "features", "of", "osteopathia", "striata.", "METHODS:", "Sequencing", "of", "genomic", "DNA", "from", "the", "affected", "individual", "and", "both", "parents", "to", "search", "for", "pathogenic", "mutations", "in", "PORCN", "gene.", "RESULTS:", "DNA", "sequencing", "disclosed", "a", "heterozygous", "G>T", "substitution", "at", "nucleotide", "c.898", " ", "within", "exon", "10", "(NM_203475.1),", "converting", "a", "glutamic", "acid", "residue", "(GAA)", "to", "a", "premature", "termination", "codon", "(TAA).", "This", "mutation,", "designated", "p.E300X", ",", "was", "not", "detected", "in", "DNA", "from", "either", "parent", "or", "in", "100", "control", "chromosomes.", "CONCLUSION:", "Identification", "of", "this", "new", "de", "novo", "nonsense", "mutation", "confirms", "the", "diagnosis", "of", "FDH", "in", "this", "child", "and", "highlights", "the", "clinical", "importance", "of", "PORCN", "and", "Wnt", "signalling", "pathways", "in", "embryogenesis." ]
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BACKGROUND: Focal dermal hypoplasia (FDH) (OMIM 305600) is an X-linked dominant disorder of ecto-mesodermal development. Also known as Goltz syndrome, FDH presents with characteristic linear streaks of hypoplastic dermis and variable abnormalities of bone, nails, hair, limbs, teeth and eyes. The molecular basis of FDH involves mutations in the PORCN gene, which encodes an enzyme that allows membrane targeting and secretion of several Wnt proteins critical for normal tissue development. OBJECTIVES: To investigate the molecular basis of FDH in a 2-year-old Thai girl who presented at birth with depressed, pale linear scars on the trunk and limbs, sparse brittle hair, syndactyly of the right middle and ring fingers, dental caries and radiological features of osteopathia striata. METHODS: Sequencing of genomic DNA from the affected individual and both parents to search for pathogenic mutations in PORCN gene. RESULTS: DNA sequencing disclosed a heterozygous G>T substitution at nucleotide c.898 within exon 10 (NM_203475.1), converting a glutamic acid residue (GAA) to a premature termination codon (TAA). This mutation, designated p.E300X , was not detected in DNA from either parent or in 100 control chromosomes. CONCLUSION: Identification of this new de novo nonsense mutation confirms the diagnosis of FDH in this child and highlights the clinical importance of PORCN and Wnt signalling pathways in embryogenesis.
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The RET proto-oncogene (REarranged during Transfection; RET) plays an important role in the causation of many thyroid tumours. Germline RET proto-oncogene missense mutations have been clearly linked to medullary thyroid carcinoma (MTC) and the inherited cancer syndrome multiple endocrine neoplasia type 2 (MEN2A, MEN2B). METHODS: We investigated a cohort of MEN2-related patients referred to Tygerberg Hospital, W Cape (2003-2009). The study cohort was divided into three groups based on pathology (viz. MEN/MTC, phaeochromocytoma, and a miscellaneous group of MEN pathologies). Families with identified high-risk factors were recalled. Serum calcitonin levels were monitored where indicated. DNA was extracted from whole blood by standard techniques and polymerase chain reaction (PCR) products screened for RET gene variations by heteroduplex single-strand duplication techniques (heteroduplex single-strand conformation polymorphism analysis) being validated with automated sequencing techniques showing conformational variants in acrylamide gel. RESULTS: We screened 40 persons, male/female ratio 1:1.5. Three ethnic groups were represented (white (12), black (11) and mixed race (17)). Nine were index MTC cases, 5 phaeochromocytoma, 3 Hirschsprung's disease-MEN associations and 2 miscellaneous (1 neuroblastoma, 1 intestinal neuronal dysplasia), while 1 fell into the MEN2B category. The remaining 19 were unaffected relatives screened for carrier status, among whom afamilial recurrence was observed in 7. On genetic testing, an RET point mutation at the high-risk 634 cysteine allele was identified in 11 cases. A further cysteine radical mutation at the 620 position was related to MEN2 in 3 families plus 1 other family referred from elsewhere. Other less-recognised gene variations were detected throughout the RET gene in 70% of cases and included the 691 position on codon 11 (11 cases); the 432 position (4 cases, 1 homozygous) intronic mutations on exon 4 (1 case); and an IVS19-37G/C and a D1017N variation in exon 19 in 2 MEN families. Fifteen MTC patients have had thyroidectomies, of which 2 were prophylactic (C-cell hyperplasia; early occult MTC). A further 3 are awaiting prophylactic surgery. CONCLUSION: RET gene mutation carries a risk of MEN2 and MTC in all ethnic groups in South Africa. Prophylactic surgery may prevent MTC, so genetic screening is important to identify and treat high-risk patients.
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15148206
[ "AIM:", "To", "determine", "the", "disease", "causing", "gene", "defects", "in", "two", "patients", "with", "Meesmann's", "corneal", "dystrophy.", "METHODS:", "Mutational", "analysis", "of", "domains", "1A", "and", "2B", "of", "the", "keratin", "3", "(K3)", "and", "keratin", "12", "(K12)", "genes", "from", "two", "patients", "with", "Meesmann's", "corneal", "dystrophy", "was", "performed", "by", "polymerase", "chain", "reaction", "amplification", "and", "direct", "sequencing.", "RESULTS:", "Novel", "mutations", "of", "the", "K12", "gene", "were", "identified", "in", "both", "patients.", "In", "one", "patient", "a", "heterozygous", "point", "mutation", "(", "429A-->C", " ", "=", "Arg135Ser", ")", "was", "found", "in", "the", "1A", "domain", "of", "the", "K12", "gene.", "This", "mutation", "was", "confirmed", "by", "restriction", "digestion.", "In", "the", "second", "patient", "a", "heterozygous", "27", "bp", "duplication", "was", "found", "inserted", "in", "the", "2B", "domain", "at", "nucleotide", "position", "1222", "(", "1222ins27", ")", "of", "the", "K12", "gene.", "This", "mutation", "was", "confirmed", "by", "gel", "electrophoresis.", "The", "mutations", "were", "not", "present", "in", "unaffected", "controls.", "CONCLUSION:", "Novel", "K12", "mutations", "were", "linked", "to", "Meesmann's", "corneal", "dystrophy", "in", "two", "different", "patients.", "A", "missense", "mutation", "replacing", "a", "highly", "conserved", "arginine", "residue", "in", "the", "beginning", "of", "the", "helix", "initiation", "motif", "was", "found", "in", "one", "patient,", "and", "an", "insertion", "mutation,", "consisting", "of", "a", "duplication", "of", "27", "nucleotides,", "was", "found", "before", "the", "helix", "termination", "motif", "in", "the", "other." ]
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AIM: To determine the disease causing gene defects in two patients with Meesmann's corneal dystrophy. METHODS: Mutational analysis of domains 1A and 2B of the keratin 3 (K3) and keratin 12 (K12) genes from two patients with Meesmann's corneal dystrophy was performed by polymerase chain reaction amplification and direct sequencing. RESULTS: Novel mutations of the K12 gene were identified in both patients. In one patient a heterozygous point mutation ( 429A-->C = Arg135Ser ) was found in the 1A domain of the K12 gene. This mutation was confirmed by restriction digestion. In the second patient a heterozygous 27 bp duplication was found inserted in the 2B domain at nucleotide position 1222 ( 1222ins27 ) of the K12 gene. This mutation was confirmed by gel electrophoresis. The mutations were not present in unaffected controls. CONCLUSION: Novel K12 mutations were linked to Meesmann's corneal dystrophy in two different patients. A missense mutation replacing a highly conserved arginine residue in the beginning of the helix initiation motif was found in one patient, and an insertion mutation, consisting of a duplication of 27 nucleotides, was found before the helix termination motif in the other.
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15200408
[]
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16288199
[]
[]
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17356395
[ "Monitoring", "the", "isochromosome", "i(7)(q10)", "in", "the", "bone", "marrow", "of", "patients", "with", "Shwachman", "syndrome", "by", "real-time", "quantitative", "PCR." ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
Monitoring the isochromosome i(7)(q10) in the bone marrow of patients with Shwachman syndrome by real-time quantitative PCR.
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15807692
[ "Identification", "of", "novel", "type", "VII", "collagen", "gene", "mutations", "resulting", "in", "severe", "recessive", "dystrophic", "epidermolysis", "bullosa." ]
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Identification of novel type VII collagen gene mutations resulting in severe recessive dystrophic epidermolysis bullosa.
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15814629
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21546516
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15623763
[ "PURPOSE:", "To", "identify", "mutations", "in", "the", "TGFBI", "gene", "in", "Indian", "patients", "with", "lattice", "corneal", "dystrophy", "(LCD)", "or", "granular", "corneal", "dystrophy", "(GCD)", "and", "to", "look", "for", "genotype-phenotype", "correlations.", "METHODS:", "Thirty-seven", "unrelated", "patients", "were", "studied,", "18", "with", "LCD", "and", "19", "with", "GCD.", "The", "diagnosis", "of", "LCD", "or", "GCD", "was", "made", "on", "the", "basis", "of", "clinical", "and/or", "histopathological", "evaluation.", "Exons", "and", "flanking", "intron", "sequences", "of", "the", "TGFBI", "gene", "were", "amplified", "by", "PCR", "with", "specific", "primers.", "PCR", "products", "were", "screened", "by", "the", "method", "of", "single-strand", "conformation", "polymorphism", "followed", "by", "sequencing.", "Mutations", "were", "confirmed", "by", "screening", "at", "least", "100", "unrelated", "normal", "control", "subjects.", "RESULTS:", "Mutations", "were", "identified", "in", "14", "of", "18", "patients", "with", "LCD", "and", "in", "all", "19", "patients", "with", "GCD.", "In", "LCD,", "three", "novel", "heterozygous", "mutations", "found", "were", "glycine-594-valine", " ", "(", "Gly594Val", ")", "in", "2", "of", "18", "patients,", "valine-539-aspartic", " ", "acid", "(", "Val539Asp", ")", "in", "1", "patient,", "and", "deletion", "of", "valine", "624,", "valine", "625", "(", "Val624-Val625del", ")", "in", "1", "patient.", "In", "addition,", "mutation", "of", "arginine", "124-to-cysteine", " ", "(", "Arg124Cys", ")", "was", "found", "in", "8", "of", "18", "patients", "and", "histidine", "626-to-arginine", " ", "(", "His626Arg", ")", "in", "2", "of", "18", "patients.", "Atypical", "clinical", "features", "for", "LCD", "were", "noted", "in", "patients", "with", "the", "Gly594Val", " ", "and", "Val624-Val625del", " ", "mutations.", "In", "GCD,", "18", "patients", "with", "GCD", "type", "I", "had", "a", "mutation", "of", "arginine", "555-to-tryptophan", " ", "(", "Arg555Trp", ")", "and", "1", "patient", "with", "GCD", "type", "III", "(Reis-Bucklers", "dystrophy),", "had", "the", "Arg124Leu", " ", "mutation.", "Seven", "novel", "single-nucleotide", "polymorphisms", "(SNPs)", "were", "also", "found,", "of", "which", "a", "change", "of", "leucine", "269", "to", "phenylalanine", " ", "(", "Leu269Phe", ")", "was", "found", "in", "12", "of", "18", "patients", "with", "the", "Arg555Trp", " ", "mutation.", "CONCLUSIONS:", "Arg124Cys", " ", "and", "Arg555Trp", " ", "appear", "to", "be", "the", "predominant", "mutations", "causing", "LCD", "and", "GCD,", "respectively,", "in", "the", "population", "studied.", "The", "novel", "mutations", "identified", "in", "this", "study", "are", "associated", "with", "distinct", "phenotypes." ]
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PURPOSE: To identify mutations in the TGFBI gene in Indian patients with lattice corneal dystrophy (LCD) or granular corneal dystrophy (GCD) and to look for genotype-phenotype correlations. METHODS: Thirty-seven unrelated patients were studied, 18 with LCD and 19 with GCD. The diagnosis of LCD or GCD was made on the basis of clinical and/or histopathological evaluation. Exons and flanking intron sequences of the TGFBI gene were amplified by PCR with specific primers. PCR products were screened by the method of single-strand conformation polymorphism followed by sequencing. Mutations were confirmed by screening at least 100 unrelated normal control subjects. RESULTS: Mutations were identified in 14 of 18 patients with LCD and in all 19 patients with GCD. In LCD, three novel heterozygous mutations found were glycine-594-valine ( Gly594Val ) in 2 of 18 patients, valine-539-aspartic acid ( Val539Asp ) in 1 patient, and deletion of valine 624, valine 625 ( Val624-Val625del ) in 1 patient. In addition, mutation of arginine 124-to-cysteine ( Arg124Cys ) was found in 8 of 18 patients and histidine 626-to-arginine ( His626Arg ) in 2 of 18 patients. Atypical clinical features for LCD were noted in patients with the Gly594Val and Val624-Val625del mutations. In GCD, 18 patients with GCD type I had a mutation of arginine 555-to-tryptophan ( Arg555Trp ) and 1 patient with GCD type III (Reis-Bucklers dystrophy), had the Arg124Leu mutation. Seven novel single-nucleotide polymorphisms (SNPs) were also found, of which a change of leucine 269 to phenylalanine ( Leu269Phe ) was found in 12 of 18 patients with the Arg555Trp mutation. CONCLUSIONS: Arg124Cys and Arg555Trp appear to be the predominant mutations causing LCD and GCD, respectively, in the population studied. The novel mutations identified in this study are associated with distinct phenotypes.
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In this paper, we present whole-organ histologic and genetic mapping studies using hypervariable DNA markers on chromosome 13 and then integrate the recombination- and single-nucleotide polymorphic sites (SNPs)-based deletion maps with the annotated genome sequence. Using bladders resected from patients with invasive urothelial carcinoma, we studied allelic patterns of 40 microsatellite markers mapping to all regions of chromosome 13 and 79 SNPs located within the 13q14 region containing the RB1 gene. A whole-organ histologic and genetic mapping strategy was used to identify the evolution of allelic losses on chromosome 13 during the progression of bladder neoplasia. Markers mapping to chromosomal regions involved in clonal expansion of preneoplastic intraurothelial lesions were subsequently tested in 25 tumors and 21 voided urine samples of patients with bladder cancer. Four clusters of allelic losses mapping to distinct regions of chromosome 13 were identified. Markers mapping to the 13q14 region that is flanked by D13S263 and D13S276, which contains the RB1 gene, showed allelic losses associated with early clonal expansion of intraurothelial neoplasia. Such losses could be identified in approximately 32% bladder tumor tissue samples and 38% of voided urines from patients with bladder cancer. The integration of distribution patterns of clonal allelic losses revealed by the microsatellite markers with those obtained by genotyping of SNPs disclosed that the loss within an approximately 4-Mb segment centered around RB1 may represent an incipient event in bladder neoplasia. However, the inactivation of RB1 occurred later and was associated with the onset of severe dysplasia/carcinoma in situ. Our studies provide evidence for the presence of critical alternative candidate genes mapping to the 13q14 region that are involved in clonal expansion of neoplasia within the bladder antecedent to the inactivation of the RB1 gene.
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[ "BACKGROUND:", "Classic", "neonatal-onset", "glycine", "encephalopathy", "(GE)", "is", "devastating", "and", "life", "threatening.", "Milder,", "later", "onset", "variants", "have", "been", "reported", "but", "were", "usually", "sporadic", "and", "incompletely", "defined.", "OBJECTIVE:", "To", "determine", "the", "clinical", "and", "biochemical", "phenotype", "and", "molecular", "basis", "of", "mild", "GE", "in", "nine", "children", "from", "a", "consanguineous", "Israeli", "Bedouin", "kindred.", "METHODS:", "Genomic", "DNA", "was", "screened", "for", "GLDC,", "AMT,", "and", "GCSH", "gene", "mutations.", "GLDC", "expression", "in", "lymphoblasts", "was", "studied", "by", "Northern", "blot", "and", "reverse", "transcriptase", "PCR", "analysis.", "RESULTS:", "Clinical", "features", "included", "hypotonia,", "abnormal", "movements,", "convulsions,", "and", "moderate", "mental", "retardation", "with", "relative", "sparing", "of", "gross", "motor", "function,", "activities", "of", "daily", "living", "skills,", "and", "receptive", "language.", "Aggression", "and", "irritability", "were", "prominent.", "CSF-to-plasma", "glycine", "ratio", "was", "mildly", "to", "moderately", "elevated.", "All", "nine", "patients", "were", "homozygous", "and", "their", "parents", "heterozygous", "for", "a", "novel,", "translationally", "silent", "GLDC", "exon", "22", "transversion", "c.2607C>A", ".", "Lymphoblast", "GLDC", "mRNA", "levels", "were", "considerably", "reduced.", "Three", "aberrantly", "spliced", "cDNA", "species", "were", "identified:", "exon", "22", "and", "exon", "22", "to", "23", "skipping,", "and", "insertion", "of", "an", "87-base", "pair", "cryptic", "exon.", "Homozygosity", "for", "c.2607C>A", " ", "was", "also", "identified", "in", "an", "unrelated", "but", "haplotypically", "identical", "patient", "with", "an", "unusually", "favorable", "outcome", "despite", "severe", "neonatal-onset", "GE.", "Mutation", "analysis", "enabled", "prenatal", "diagnosis", "of", "three", "unaffected", "and", "one", "affected", "pregnancies.", "CONCLUSIONS:", "The", "mutation", "in", "this", "kindred", "led", "to", "missplicing", "and", "reduced", "GLDC", "(glycine", "decarboxylase)", "expression.", "The", "4", "to", "6%", "of", "normally", "spliced", "GLDC", "mRNA", "in", "the", "patients", "may", "account", "for", "their", "relatively", "favorable", "clinical", "outcome", "compared", "with", "patients", "with", "classic", "glycine", "encephalopathy." ]
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BACKGROUND: Classic neonatal-onset glycine encephalopathy (GE) is devastating and life threatening. Milder, later onset variants have been reported but were usually sporadic and incompletely defined. OBJECTIVE: To determine the clinical and biochemical phenotype and molecular basis of mild GE in nine children from a consanguineous Israeli Bedouin kindred. METHODS: Genomic DNA was screened for GLDC, AMT, and GCSH gene mutations. GLDC expression in lymphoblasts was studied by Northern blot and reverse transcriptase PCR analysis. RESULTS: Clinical features included hypotonia, abnormal movements, convulsions, and moderate mental retardation with relative sparing of gross motor function, activities of daily living skills, and receptive language. Aggression and irritability were prominent. CSF-to-plasma glycine ratio was mildly to moderately elevated. All nine patients were homozygous and their parents heterozygous for a novel, translationally silent GLDC exon 22 transversion c.2607C>A . Lymphoblast GLDC mRNA levels were considerably reduced. Three aberrantly spliced cDNA species were identified: exon 22 and exon 22 to 23 skipping, and insertion of an 87-base pair cryptic exon. Homozygosity for c.2607C>A was also identified in an unrelated but haplotypically identical patient with an unusually favorable outcome despite severe neonatal-onset GE. Mutation analysis enabled prenatal diagnosis of three unaffected and one affected pregnancies. CONCLUSIONS: The mutation in this kindred led to missplicing and reduced GLDC (glycine decarboxylase) expression. The 4 to 6% of normally spliced GLDC mRNA in the patients may account for their relatively favorable clinical outcome compared with patients with classic glycine encephalopathy.
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19429807
[ "Menkes", "disease", "(MD,", "MIM", "309400)", "is", "a", "fatal", "X-linked", "recessive", "disorder", "that", "is", "caused", "by", "mutations", "in", "the", "gene", "encoding", "ATP7A,", "a", "copper-transporting,", "P-type", "ATPase.", "Patients", "with", "MD", "are", "characterized", "by", "progressive", "hypotonia,", "seizures,", "failure", "to", "thrive,", "and", "death", "in", "early", "childhood.", "Two", "Korean", "patients", "were", "diagnosed", "with", "Menkes", "disease", "by", "clinical", "and", "biochemical", "findings.", "We", "found", "one", "missense", "mutation", "and", "one", "gross", "deletion", "in", "the", "ATP7A", "gene", "in", "the", "patients.", "The", "missense", "mutation", "in", "Patient", "1,", "c.3943G>A", " ", "(", "p.G1315R", ")", "in", "exon", "20,", "was", "identified", "in", "a", "previous", "report.", "Patient", "2", "had", "a", "gross", "deletion", "of", "c.1544-?_2916+?", ",", "which", "was", "a", "novel", "mutation.", "The", "patients'", "mothers", "were", "shown", "to", "be", "carriers", "of", "the", "respective", "mutations.", "Prenatal", "DNA", "diagnosis", "in", "the", "family", "of", "Patient", "2", "was", "successfully", "performed,", "showing", "a", "male", "fetus", "with", "the", "wild-type", "genotype.", "The", "gross", "deletion", "is", "the", "first", "mutation", "to", "be", "identified", "in", "the", "ATP7A", "gene", "in", "Korean", "MD", "patients.", "We", "expect", "that", "our", "findings", "will", "be", "helpful", "in", "understanding", "the", "wide", "range", "of", "genetic", "variation", "in", "ATP7A", "in", "Korean", "MD", "patients." ]
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Menkes disease (MD, MIM 309400) is a fatal X-linked recessive disorder that is caused by mutations in the gene encoding ATP7A, a copper-transporting, P-type ATPase. Patients with MD are characterized by progressive hypotonia, seizures, failure to thrive, and death in early childhood. Two Korean patients were diagnosed with Menkes disease by clinical and biochemical findings. We found one missense mutation and one gross deletion in the ATP7A gene in the patients. The missense mutation in Patient 1, c.3943G>A ( p.G1315R ) in exon 20, was identified in a previous report. Patient 2 had a gross deletion of c.1544-?_2916+? , which was a novel mutation. The patients' mothers were shown to be carriers of the respective mutations. Prenatal DNA diagnosis in the family of Patient 2 was successfully performed, showing a male fetus with the wild-type genotype. The gross deletion is the first mutation to be identified in the ATP7A gene in Korean MD patients. We expect that our findings will be helpful in understanding the wide range of genetic variation in ATP7A in Korean MD patients.
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15282322
[ "The", "fission", "yeast", "Schizosaccharomyces", "pombe", "rad9", "gene", "promotes", "cell", "survival", "through", "activation", "of", "cell", "cycle", "checkpoints", "induced", "by", "DNA", "damage.", "Mouse", "embryonic", "stem", "cells", "with", "a", "targeted", "deletion", "of", "Mrad9,", "the", "mouse", "ortholog", "of", "this", "gene,", "were", "created", "to", "evaluate", "its", "function", "in", "mammals.", "Mrad9(-/-)", "cells", "demonstrated", "a", "marked", "increase", "in", "spontaneous", "chromosome", "aberrations", "and", "HPRT", "mutations,", "indicating", "a", "role", "in", "the", "maintenance", "of", "genomic", "integrity.", "These", "cells", "were", "also", "extremely", "sensitive", "to", "UV", "light,", "gamma", "rays,", "and", "hydroxyurea,", "and", "heterozygotes", "were", "somewhat", "sensitive", "to", "the", "last", "two", "agents", "relative", "to", "Mrad9(+/+)", "controls.", "Mrad9(-/-)", "cells", "could", "initiate", "but", "not", "maintain", "gamma-ray-induced", "G(2)", "delay", "and", "retained", "the", "ability", "to", "delay", "DNA", "synthesis", "rapidly", "after", "UV", "irradiation,", "suggesting", "that", "checkpoint", "abnormalities", "contribute", "little", "to", "the", "radiosensitivity", "observed.", "Ectopic", "expression", "of", "Mrad9", "or", "human", "HRAD9", "complemented", "Mrad9(-/-)", "cell", "defects,", "indicating", "that", "the", "gene", "has", "radioresponse", "and", "genomic", "maintenance", "functions", "that", "are", "evolutionarily", "conserved.", "Mrad9(+/-)", "mice", "were", "generated,", "but", "heterozygous", "intercrosses", "failed", "to", "yield", "Mrad9(-/-)", "pups,", "since", "embryos", "died", "at", "midgestation.", "Furthermore,", "Mrad9(-/-)", "mouse", "embryo", "fibroblasts", "were", "not", "viable.", "These", "investigations", "establish", "Mrad9", "as", "a", "key", "mammalian", "genetic", "element", "of", "pathways", "that", "regulate", "the", "cellular", "response", "to", "DNA", "damage,", "maintenance", "of", "genomic", "integrity,", "and", "proper", "embryonic", "development." ]
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The fission yeast Schizosaccharomyces pombe rad9 gene promotes cell survival through activation of cell cycle checkpoints induced by DNA damage. Mouse embryonic stem cells with a targeted deletion of Mrad9, the mouse ortholog of this gene, were created to evaluate its function in mammals. Mrad9(-/-) cells demonstrated a marked increase in spontaneous chromosome aberrations and HPRT mutations, indicating a role in the maintenance of genomic integrity. These cells were also extremely sensitive to UV light, gamma rays, and hydroxyurea, and heterozygotes were somewhat sensitive to the last two agents relative to Mrad9(+/+) controls. Mrad9(-/-) cells could initiate but not maintain gamma-ray-induced G(2) delay and retained the ability to delay DNA synthesis rapidly after UV irradiation, suggesting that checkpoint abnormalities contribute little to the radiosensitivity observed. Ectopic expression of Mrad9 or human HRAD9 complemented Mrad9(-/-) cell defects, indicating that the gene has radioresponse and genomic maintenance functions that are evolutionarily conserved. Mrad9(+/-) mice were generated, but heterozygous intercrosses failed to yield Mrad9(-/-) pups, since embryos died at midgestation. Furthermore, Mrad9(-/-) mouse embryo fibroblasts were not viable. These investigations establish Mrad9 as a key mammalian genetic element of pathways that regulate the cellular response to DNA damage, maintenance of genomic integrity, and proper embryonic development.
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16216473
[ "HPRTSardinia:", "a", "new", "point", "mutation", "causing", "HPRT", "deficiency", "without", "Lesch-Nyhan", "disease." ]
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HPRTSardinia: a new point mutation causing HPRT deficiency without Lesch-Nyhan disease.
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[ -100, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -100 ]
19542096
[ "Mutation", "of", "SYNE-1,", "encoding", "an", "essential", "component", "of", "the", "nuclear", "lamina,", "is", "responsible", "for", "autosomal", "recessive", "arthrogryposis." ]
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Mutation of SYNE-1, encoding an essential component of the nuclear lamina, is responsible for autosomal recessive arthrogryposis.
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18385169
[ "TNFA", "-308G>A", " ", "in", "two", "international", "population-based", "cohorts", "and", "risk", "of", "asthma." ]
[ 0, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
TNFA -308G>A in two international population-based cohorts and risk of asthma.
[ 2, 4705, 1019, 17, 20962, 1029, 34, 43, 1922, 2288, 6019, 2973, 17, 2454, 8509, 1930, 2565, 1927, 6678, 18, 3 ]
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18704161
[ "Genetic", "variation", "in", "an", "individual", "human", "exome." ]
[ 0, 0, 0, 0, 0, 0, 0 ]
Genetic variation in an individual human exome.
[ 2, 3299, 4516, 1922, 1925, 2725, 2616, 16390, 18, 3 ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
[ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 ]
[ -100, 0, 0, 0, 0, 0, 0, 0, 0, -100 ]
21406173
[]
[]
[ 2, 3 ]
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[ 1, 1 ]
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22174939
[ "RET", "mutational", "spectrum", "in", "Hirschsprung", "disease:", "evaluation", "of", "601", "Chinese", "patients." ]
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RET mutational spectrum in Hirschsprung disease: evaluation of 601 Chinese patients.
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[ -100, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -100 ]
21717135
[]
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20017074
[ "BACKGROUND:", "Raised", "SERPINE1", "plasma", "levels", "are", "related", "to", "a", "1-bp", "guanine", "deletion/insertion", "(4G5G)", "polymorphism", "in", "the", "promoter", "of", "the", "SERPINE1", "(plasminogen", "activator", "inhibitor", "1", "-", "PAI1)", "gene.", "Evidence", "suggested", "that", "the", "plasma", "levels", "of", "SERPINE1", "modulate", "the", "risk", "of", "coronary", "artery", "disease;", "furthermore,", "that", "the", "4G5G", "polymorphism", "affects", "the", "expression", "of", "the", "SERPINE1", "gene.", "AIM:", "To", "analyse", "association", "of", "SERPINE1", "polymorphism", "with", "occlusive", "artery", "disease", "(OAD)", "and", "deep", "venous", "thrombosis", "(DVT)", "in", "Macedonians", "in", "order", "to", "investigate", "its", "role", "as", "a", "part", "of", "candidate", "genes", "in", "different", "vascular", "diseases", "in", "Macedonians.", "METHODS:", "Investigated", "groups", "consisted", "of", "82", "healthy", "patients,", "75", "with", "OAD,", "and", "66", "with", "DVT.", "Blood", "samples", "were", "collected", "after", "written", "informed", "consent", "was", "obtained,", "and", "DNA", "was", "isolated", "from", "peripheral", "blood", "leukocytes.", "Identification", "of", "SERPINE1", "polymorphism", "was", "done", "with", "CVD", "StripAssay", "(ViennaLab,", "Labordiagnostica", "GmbH,", "Austria).", "The", "population", "genetics", "analysis", "package,", "PyPop,", "was", "used", "for", "analysis", "of", "the", "SERPINE1", "data.", "Pearson's", "P-values,", "crude", "odds", "ratio", "and", "Wald's", "95%", "CI", "were", "calculated", "with", "Bonferroni", "corrected", "p", "value.", "RESULTS:", "The", "frequency", "of", "4G", "allele", "for", "SERPINE1", "was", "0.538", "for", "DVT,", "0.555", "for", "healthy", "participants,", "and", "0.607", "for", "OAD.", "The", "frequency", "of", "5G", "allele", "for", "SERPINE1", "was", "the", "smallest", "in", "patients", "with", "OAD", "(0.393)", "and", "was", "higher", "in", "healthy", "participants", "(0.445),", "and", "patients", "with", "DVT", "(0.462).", "Test", "of", "neutrality", "(Fnd)", "showed", "negative", "value,", "but", "was", "significantly", "different", "from", "0", "for", "SERPINE1", "in", "healthy", "participants", "(p", "of", "F", "=", "0.041)", "and", "in", "patients", "with", "DVT", "(p", "of", "F", "=", "0.030).", "SERPINE1", "genotypes", "in", "healthy", "participants", "and", "patients", "with", "OAD", "were", "not", "in", "Hardy", "Weinberg", "proportions", "(p", "=", "0.019", "and", "0.001,", "respectively).", "No", "association", "between", "SERPINE1", "polymorphisms", "and", "OAD", "or", "DVT", "was", "found.", "CONCLUSION:", "There", "is", "no", "significant", "relationship", "between", "SERPINE1", "polymorphisms", "and", "occlusive", "artery", "disease", "or", "deep", "venous", "thrombosis", "in", "Macedonian", "population." ]
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BACKGROUND: Raised SERPINE1 plasma levels are related to a 1-bp guanine deletion/insertion (4G5G) polymorphism in the promoter of the SERPINE1 (plasminogen activator inhibitor 1 - PAI1) gene. Evidence suggested that the plasma levels of SERPINE1 modulate the risk of coronary artery disease; furthermore, that the 4G5G polymorphism affects the expression of the SERPINE1 gene. AIM: To analyse association of SERPINE1 polymorphism with occlusive artery disease (OAD) and deep venous thrombosis (DVT) in Macedonians in order to investigate its role as a part of candidate genes in different vascular diseases in Macedonians. METHODS: Investigated groups consisted of 82 healthy patients, 75 with OAD, and 66 with DVT. Blood samples were collected after written informed consent was obtained, and DNA was isolated from peripheral blood leukocytes. Identification of SERPINE1 polymorphism was done with CVD StripAssay (ViennaLab, Labordiagnostica GmbH, Austria). The population genetics analysis package, PyPop, was used for analysis of the SERPINE1 data. Pearson's P-values, crude odds ratio and Wald's 95% CI were calculated with Bonferroni corrected p value. RESULTS: The frequency of 4G allele for SERPINE1 was 0.538 for DVT, 0.555 for healthy participants, and 0.607 for OAD. The frequency of 5G allele for SERPINE1 was the smallest in patients with OAD (0.393) and was higher in healthy participants (0.445), and patients with DVT (0.462). Test of neutrality (Fnd) showed negative value, but was significantly different from 0 for SERPINE1 in healthy participants (p of F = 0.041) and in patients with DVT (p of F = 0.030). SERPINE1 genotypes in healthy participants and patients with OAD were not in Hardy Weinberg proportions (p = 0.019 and 0.001, respectively). No association between SERPINE1 polymorphisms and OAD or DVT was found. CONCLUSION: There is no significant relationship between SERPINE1 polymorphisms and occlusive artery disease or deep venous thrombosis in Macedonian population.
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17327131
[ "Molecular", "analysis", "of", "the", "CYP2F1", "gene:", "identification", "of", "a", "frequent", "non-functional", "allelic", "variant." ]
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Molecular analysis of the CYP2F1 gene: identification of a frequent non-functional allelic variant.
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17002658
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19404517
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21340161
[]
[]
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16506214
[ "Genetic", "variation", "in", "the", "COX-2", "gene", "and", "the", "association", "with", "prostate", "cancer", "risk." ]
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Genetic variation in the COX-2 gene and the association with prostate cancer risk.
[ 2, 3299, 4516, 1922, 1920, 6374, 17, 22, 2359, 1930, 1920, 3279, 1956, 5683, 2539, 2565, 18, 3 ]
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17185385
[ "Two", "sites", "in", "the", "MAPT", "region", "confer", "genetic", "risk", "for", "Guam", "ALS/PDC", "and", "dementia." ]
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Two sites in the MAPT region confer genetic risk for Guam ALS/PDC and dementia.
[ 2, 2288, 3402, 1922, 1920, 4446, 1031, 3031, 7909, 3299, 2565, 1958, 3194, 1976, 10534, 19, 19993, 1930, 7811, 18, 3 ]
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16781314
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18270997
[ "Catechol-O-methyltransferase", "(COMT)", "gene", "variants:", "possible", "association", "of", "the", "Val158Met", " ", "variant", "with", "opiate", "addiction", "in", "Hispanic", "women." ]
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Catechol-O-methyltransferase (COMT) gene variants: possible association of the Val158Met variant with opiate addiction in Hispanic women.
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16410744
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18457324
[ "BACKGROUND:", "Exposure", "to", "anthracyclines", "as", "part", "of", "cancer", "therapy", "has", "been", "associated", "with", "the", "development", "of", "congestive", "heart", "failure", "(CHF).", "The", "potential", "role", "of", "genetic", "risk", "factors", "in", "anthracycline-related", "CHF", "remains", "to", "be", "defined.", "Thus,", "in", "this", "study,", "the", "authors", "examined", "whether", "common", "polymorphisms", "in", "candidate", "genes", "involved", "in", "the", "pharmacodynamics", "of", "anthracyclines", "(in", "particular,", "the", "nicotinamide", "adenine", "dinucleotide", "phosphate:quinone", "oxidoreductase", "1", "gene", "NQO1", "and", "the", "carbonyl", "reductase", "3", "gene", "CBR3)", "had", "an", "impact", "on", "the", "risk", "of", "anthracycline-related", "CHF.", "METHODS:", "A", "nested", "case-control", "study", "was", "conducted", "within", "a", "cohort", "of", "1979", "patients", "enrolled", "in", "the", "Childhood", "Cancer", "Survivor", "Study", "who", "received", "treatment", "with", "anthracyclines", "and", "had", "available", "DNA.", "Thirty", "patients", "with", "CHF", "(cases)", "and", "115", "matched", "controls", "were", "genotyped", "for", "polymorphisms", "in", "NQO1", "(NQO1*2)", "and", "CBR3", "(the", "CBR3", "valine", "[V]", "to", "methionine", "[M]", "substitution", "at", "position", "244", "[", "V244M", "]).", "Enzyme", "activity", "assays", "with", "recombinant", "CBR3", "isoforms", "(CBR3", "V244", "and", "CBR3", "M244)", "and", "the", "anthracycline", "substrate", "doxorubicin", "were", "used", "to", "investigate", "the", "functional", "impact", "of", "the", "CBR3", "V244M", " ", "polymorphism.", "RESULTS:", "Multivariate", "analyses", "adjusted", "for", "sex", "and", "primary", "disease", "recurrence", "were", "used", "to", "test", "for", "associations", "between", "the", "candidate", "genetic", "polymorphisms", "(NQO1*2", "and", "CBR3", "V244M", ")", "and", "the", "risk", "of", "CHF.", "Analyses", "indicated", "no", "association", "between", "the", "NQO1*2", "polymorphism", "and", "the", "risk", "of", "anthracycline-related", "CHF", "(odds", "ratio", "[OR],", "1.04;", "P=.97).", "There", "was", "a", "trend", "toward", "an", "association", "between", "the", "CBR3", "V244M", " ", "polymorphism", "and", "the", "risk", "of", "CHF", "(OR,", "8.16;", "P=.056", "for", "G/G", "vs", "A/A;", "OR,", "5.44;", "P=.092", "for", "G/A", "vs", "A/A).", "In", "line,", "recombinant", "CBR3", "V244", "(G", "allele)", "synthesized", "2.6-fold", "more", "cardiotoxic", "doxorubicinol", "per", "unit", "of", "time", "than", "CBR3", "M244", "(A", "allele;", "CBR3", "V244", "[8.26+/-3.57", "nmol/hour.mg]", "vs", "CBR3", "M244", "[3.22+/-0.67", "nmol/hour.mg];", "P=.01).", "CONCLUSIONS:", "The", "functional", "CBR3", "V244M", " ", "polymorphism", "may", "have", "an", "impact", "on", "the", "risk", "of", "anthracycline-related", "CHF", "among", "childhood", "cancer", "survivors", "by", "modulating", "the", "intracardiac", "formation", "of", "cardiotoxic", "anthracycline", "alcohol", "metabolites.", "Larger", "confirmatory", "case-control", "studies", "are", "warranted." ]
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BACKGROUND: Exposure to anthracyclines as part of cancer therapy has been associated with the development of congestive heart failure (CHF). The potential role of genetic risk factors in anthracycline-related CHF remains to be defined. Thus, in this study, the authors examined whether common polymorphisms in candidate genes involved in the pharmacodynamics of anthracyclines (in particular, the nicotinamide adenine dinucleotide phosphate:quinone oxidoreductase 1 gene NQO1 and the carbonyl reductase 3 gene CBR3) had an impact on the risk of anthracycline-related CHF. METHODS: A nested case-control study was conducted within a cohort of 1979 patients enrolled in the Childhood Cancer Survivor Study who received treatment with anthracyclines and had available DNA. Thirty patients with CHF (cases) and 115 matched controls were genotyped for polymorphisms in NQO1 (NQO1*2) and CBR3 (the CBR3 valine [V] to methionine [M] substitution at position 244 [ V244M ]). Enzyme activity assays with recombinant CBR3 isoforms (CBR3 V244 and CBR3 M244) and the anthracycline substrate doxorubicin were used to investigate the functional impact of the CBR3 V244M polymorphism. RESULTS: Multivariate analyses adjusted for sex and primary disease recurrence were used to test for associations between the candidate genetic polymorphisms (NQO1*2 and CBR3 V244M ) and the risk of CHF. Analyses indicated no association between the NQO1*2 polymorphism and the risk of anthracycline-related CHF (odds ratio [OR], 1.04; P=.97). There was a trend toward an association between the CBR3 V244M polymorphism and the risk of CHF (OR, 8.16; P=.056 for G/G vs A/A; OR, 5.44; P=.092 for G/A vs A/A). In line, recombinant CBR3 V244 (G allele) synthesized 2.6-fold more cardiotoxic doxorubicinol per unit of time than CBR3 M244 (A allele; CBR3 V244 [8.26+/-3.57 nmol/hour.mg] vs CBR3 M244 [3.22+/-0.67 nmol/hour.mg]; P=.01). CONCLUSIONS: The functional CBR3 V244M polymorphism may have an impact on the risk of anthracycline-related CHF among childhood cancer survivors by modulating the intracardiac formation of cardiotoxic anthracycline alcohol metabolites. Larger confirmatory case-control studies are warranted.
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15135245
[ "A", "new", "but", "frequent", "mutation", "of", "apoB-100-apoB", "His3543Tyr", "." ]
[ 0, 0, 0, 0, 0, 0, 0, 1, 0 ]
A new but frequent mutation of apoB-100-apoB His3543Tyr .
[ 2, 43, 2814, 2308, 6439, 3979, 1927, 16349, 17, 2813, 17, 16349, 4167, 5798, 7514, 3145, 1005, 18, 3 ]
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12752111
[ "The", "molecular", "basis", "for", "the", "thalassaemias", "in", "Sri", "Lanka." ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
The molecular basis for the thalassaemias in Sri Lanka.
[ 2, 1920, 3272, 4859, 1958, 1920, 20338, 12392, 1036, 1922, 23973, 29561, 1019, 18, 3 ]
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17083016
[ "BACKGROUND:", "Meningococcal", "disease", "occurs", "after", "colonization", "of", "the", "nasopharynx", "with", "Neisseria", "meningitidis.", "Surfactant", "protein", "(SP)-A", "and", "SP-D", "are", "pattern-recognition", "molecules", "of", "the", "respiratory", "tract", "that", "activate", "inflammatory", "and", "phagocytic", "defences", "after", "binding", "to", "microbial", "sugars.", "Variation", "in", "the", "genes", "of", "the", "surfactant", "proteins", "affects", "the", "expression", "and", "function", "of", "these", "molecules.", "METHODS:", "Allele", "frequencies", "of", "SP-A1,", "SP-A2,", "and", "SP-D", "were", "determined", "by", "polymerase", "chain", "reaction", "in", "303", "patients", "with", "microbiologically", "proven", "meningococcal", "disease,", "including", "18", "patients", "who", "died,", "and", "222", "healthy", "control", "subjects.", "RESULTS:", "Homozygosity", "of", "allele", "1A1", "of", "SP-A2", "increased", "the", "risk", "of", "meningococcal", "disease", "(odds", "ratio", "[OR],", "7.4;", "95%", "confidence", "interval", "[CI],", "1.3-42.4);", "carriage", "of", "1A5", "reduced", "the", "risk", "(OR,", "0.3;", "95%", "CI,", "0.1-0.97).", "An", "analysis", "of", "the", "multiple", "single-nucleotide", "polymorphisms", "in", "SP-A", "demonstrated", "that", "homozygosity", "for", "alleles", "encoding", "lysine", "(in", "1A1)", "rather", "than", "glutamine", "(in", "1A5)", "at", "amino", "acid", "223", "in", "the", "carbohydrate", "recognition", "domain", "was", "associated", "with", "an", "increased", "risk", "of", "meningococcal", "disease", "(OR,", "6.7;", "95%", "CI,", "1.4-31.5).", "Carriage", "of", "alleles", "encoding", "lysine", "at", "residue", "223", "was", "found", "in", "61%", "of", "patients", "who", "died,", "compared", "with", "35%", "of", "those", "who", "survived", "(OR", "adjusted", "for", "age,", "2.9;", "95%", "CI,", "1.1-7.7).", "Genetic", "variation", "of", "SP-A1", "and", "SP-D", "was", "not", "associated", "with", "meningococcal", "disease.", "CONCLUSIONS:", "Gene", "polymorphism", "resulting", "in", "the", "substitution", "of", "glutamine", "with", "lysine", "at", "residue", "223", "in", "the", "carbohydrate", "recognition", "domain", "of", "SP-A2", "increases", "susceptibility", "to", "meningococcal", "disease,", "as", "well", "as", "the", "risk", "of", "death." ]
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BACKGROUND: Meningococcal disease occurs after colonization of the nasopharynx with Neisseria meningitidis. Surfactant protein (SP)-A and SP-D are pattern-recognition molecules of the respiratory tract that activate inflammatory and phagocytic defences after binding to microbial sugars. Variation in the genes of the surfactant proteins affects the expression and function of these molecules. METHODS: Allele frequencies of SP-A1, SP-A2, and SP-D were determined by polymerase chain reaction in 303 patients with microbiologically proven meningococcal disease, including 18 patients who died, and 222 healthy control subjects. RESULTS: Homozygosity of allele 1A1 of SP-A2 increased the risk of meningococcal disease (odds ratio [OR], 7.4; 95% confidence interval [CI], 1.3-42.4); carriage of 1A5 reduced the risk (OR, 0.3; 95% CI, 0.1-0.97). An analysis of the multiple single-nucleotide polymorphisms in SP-A demonstrated that homozygosity for alleles encoding lysine (in 1A1) rather than glutamine (in 1A5) at amino acid 223 in the carbohydrate recognition domain was associated with an increased risk of meningococcal disease (OR, 6.7; 95% CI, 1.4-31.5). Carriage of alleles encoding lysine at residue 223 was found in 61% of patients who died, compared with 35% of those who survived (OR adjusted for age, 2.9; 95% CI, 1.1-7.7). Genetic variation of SP-A1 and SP-D was not associated with meningococcal disease. CONCLUSIONS: Gene polymorphism resulting in the substitution of glutamine with lysine at residue 223 in the carbohydrate recognition domain of SP-A2 increases susceptibility to meningococcal disease, as well as the risk of death.
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12653841
[ "Complement", "C6", "homozygous", "deficiency", "(C6D)", "has", "been", "rarely", "observed", "in", "Caucasians", "but", "was", "reported", "at", "higher", "prevalence", "among", "African-Americans.", "We", "report", "on", "the", "molecular", "basis", "of", "C6D", "in", "seven", "unrelated", "black", "individuals", "of", "North", "or", "Central", "Africa", "descent", "who", "live", "in", "France.", "These", "patients", "have", "presented", "Neisseria", "meningitidis", "infection", "(four", "cases),", "focal", "and", "segmental", "glomerulosclerosis", "with", "hyalinosis", "(one", "case),", "systemic", "lupus", "erythematosus", "(one", "case)", "or", "Still's", "disease", "(one", "case).", "All", "patients", "exhibited", "undetectable", "antigenic", "C6", "by", "using", "a", "sensitive", "ELISA", "assay.", "An", "additional", "four", "cases", "of", "complete", "C6", "deficiency", "with", "no", "associated", "disease", "have", "been", "characterized", "after", "family", "studies.", "Exons", "6,", "7", "and", "12", "have", "been", "described", "recently", "as", "the", "location", "of", "molecular", "defects", "on", "the", "C6", "gene", "in", "randomly", "chosen", "black", "Americans.", "Genomic", "DNA", "from", "the", "seven", "patients", "were", "subjected", "to", "direct", "polymerase", "chain", "reaction", "amplification", "of", "these", "three", "exons.", "Nucleotide", "sequencing", "analysis", "of", "the", "amplified", "DNA", "fragments", "revealed", "a", "homozygous", "single-base", "deletion", "(", "1936delG", ")", "in", "exon", "12", "in", "three", "cases", "and", "four", "compound", "heterozygous", "deletions", "for", "a", "single", "base", "in", "exon", "7", "(", "1195delC", ")", "or", "in", "exon", "6", "(", "878delA", ")", "associated", "with", "the", "same", "deletion", "in", "exon", "12", "(", "1936delG", ").", "Our", "observations", "further", "establish", "the", "restricted", "pattern", "of", "genetic", "defects", "associated", "with", "homozygous", "C6", "complement", "deficiency", "in", "individuals", "of", "African", "descent." ]
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Complement C6 homozygous deficiency (C6D) has been rarely observed in Caucasians but was reported at higher prevalence among African-Americans. We report on the molecular basis of C6D in seven unrelated black individuals of North or Central Africa descent who live in France. These patients have presented Neisseria meningitidis infection (four cases), focal and segmental glomerulosclerosis with hyalinosis (one case), systemic lupus erythematosus (one case) or Still's disease (one case). All patients exhibited undetectable antigenic C6 by using a sensitive ELISA assay. An additional four cases of complete C6 deficiency with no associated disease have been characterized after family studies. Exons 6, 7 and 12 have been described recently as the location of molecular defects on the C6 gene in randomly chosen black Americans. Genomic DNA from the seven patients were subjected to direct polymerase chain reaction amplification of these three exons. Nucleotide sequencing analysis of the amplified DNA fragments revealed a homozygous single-base deletion ( 1936delG ) in exon 12 in three cases and four compound heterozygous deletions for a single base in exon 7 ( 1195delC ) or in exon 6 ( 878delA ) associated with the same deletion in exon 12 ( 1936delG ). Our observations further establish the restricted pattern of genetic defects associated with homozygous C6 complement deficiency in individuals of African descent.
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17065190
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12719097
[ "A", "novel", "CACNA1F", "mutation", "in", "a", "french", "family", "with", "the", "incomplete", "type", "of", "X-linked", "congenital", "stationary", "night", "blindness." ]
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A novel CACNA1F mutation in a french family with the incomplete type of X-linked congenital stationary night blindness.
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15642853
[ "BACKGROUND:", "Loss", "of", "function", "of", "the", "parkin", "gene", "(PRKN)", "is", "the", "predominant", "genetic", "cause", "of", "juvenile", "and", "early-onset", "parkinsonism", "in", "Japan,", "Europe,", "and", "the", "United", "States.", "OBJECTIVES:", "To", "evaluate", "the", "frequency", "of", "PRKN", "mutations", "in", "Taiwanese", "(ethnic", "Chinese)", "patients", "with", "early-onset", "parkinsonism", "and", "to", "explore", "genotype-phenotype", "correlations.", "DESIGN:", "Clinical", "assessment", "included", "medical,", "neurologic,", "and", "psychiatric", "evaluation.", "Genomic", "DNA", "sequencing", "and", "quantitative", "polymerase", "chain", "reaction", "were", "performed", "to", "identify", "PRKN", "mutations.", "Gene", "expression", "was", "examined", "in", "patient", "lymphoblastoid", "cell", "lines,", "in", "which", "PRKN", "mutations", "were", "identified.", "PATIENTS:", "Forty-one", "Taiwanese", "patients", "with", "early-onset", "parkinsonism", "(aged", "<50", "years", "at", "onset).", "RESULTS:", "Four", "of", "41", "probands", "had", "PRKN", "mutations.", "One", "proband", "had", "compound", "heterozygous", "mutations,", "with", "a", "PRKN", "exon", "2", "deletion", "and", "an", "exon", "7", "G284R", " ", "substitution.", "The", "phenotype", "resembled", "typical", "Parkinson", "disease.", "Three", "patients", "were", "mutation", "carriers.", "One", "proband", "had", "PRKN", "exon", "2", "and", "exon", "3", "deletions", "in", "the", "same", "allele.", "However,", "this", "patient's", "phenotype", "was", "that", "of", "classic", "\"parkin-proven\"", "autosomal", "recessive", "juvenile", "parkinsonism,", "characterized", "by", "symmetrical", "foot", "dystonia", "at", "onset,", "gait", "disturbance,", "diurnal", "change,", "and", "very", "slow", "progression.", "The", "2", "remaining", "carriers", "had", "novel", "heterozygous", "exon", "11", "R396G", " ", "substitutions.", "Patients", "with", "PRKN", "mutations", "were", "younger", "at", "onset", "than", "those", "without", "mutations,", "and", "they", "required", "a", "lower", "dose", "of", "levodopa", "despite", "longer", "disease", "duration.", "CONCLUSIONS:", "Mutations", "in", "PRKN", "are", "a", "rare", "cause", "of", "early-onset", "parkinsonism", "in", "Taiwanese", "individuals.", "The", "overall", "mutation", "frequency,", "adjusted", "for", "age", "at", "onset,", "was", "comparable", "with", "that", "reported", "for", "white", "cohorts;", "however,", "the", "point", "mutations", "identified", "seem", "to", "be", "population", "specific." ]
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BACKGROUND: Loss of function of the parkin gene (PRKN) is the predominant genetic cause of juvenile and early-onset parkinsonism in Japan, Europe, and the United States. OBJECTIVES: To evaluate the frequency of PRKN mutations in Taiwanese (ethnic Chinese) patients with early-onset parkinsonism and to explore genotype-phenotype correlations. DESIGN: Clinical assessment included medical, neurologic, and psychiatric evaluation. Genomic DNA sequencing and quantitative polymerase chain reaction were performed to identify PRKN mutations. Gene expression was examined in patient lymphoblastoid cell lines, in which PRKN mutations were identified. PATIENTS: Forty-one Taiwanese patients with early-onset parkinsonism (aged <50 years at onset). RESULTS: Four of 41 probands had PRKN mutations. One proband had compound heterozygous mutations, with a PRKN exon 2 deletion and an exon 7 G284R substitution. The phenotype resembled typical Parkinson disease. Three patients were mutation carriers. One proband had PRKN exon 2 and exon 3 deletions in the same allele. However, this patient's phenotype was that of classic "parkin-proven" autosomal recessive juvenile parkinsonism, characterized by symmetrical foot dystonia at onset, gait disturbance, diurnal change, and very slow progression. The 2 remaining carriers had novel heterozygous exon 11 R396G substitutions. Patients with PRKN mutations were younger at onset than those without mutations, and they required a lower dose of levodopa despite longer disease duration. CONCLUSIONS: Mutations in PRKN are a rare cause of early-onset parkinsonism in Taiwanese individuals. The overall mutation frequency, adjusted for age at onset, was comparable with that reported for white cohorts; however, the point mutations identified seem to be population specific.
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15807692
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In this work, we studied the proband in a small nuclear family of Chinese and Dutch/German descent and identified two novel mutations in the type VII collagen gene leading to recessive dystrophic epidermolysis bullosa, Hallopeau-Siemens variant (HS-RDEB). The maternal mutation is a single base pair deletion of a cytosine nucleotide in exon 26, designated 3472delC , resulting in a frameshift and a premature termination codon (PTC) within the same exon, 7 bp downstream of the site of the mutation. The paternal mutation is a G-->A transition located at the 5' donor splice site within intron 51, designated IVS51 + 1G-->A . This mutation leads to the activation of a cryptic splice site, 32 bp downstream of the mutation site and to subsequent aberrant out-of-frame splicing, resulting in two alternative mRNA transcripts and a downstream PTC. To our knowledge, these two mutations have not been previously reported. These findings extend the body of evidence for compound heterozygous mutations leading to HS-RDEB and provide the basis for prenatal diagnosis in this family.
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15135245
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14999772
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We have previously mapped a putative prostate cancer tumor-suppressor gene to a 1-2 Mb region of 12p12-13. Initial work to identify the tumor suppressor at this locus focused on candidates previously implicated in malignancy; however, mutational and methylation analyses failed to identify significant genomic events. An alternative approach is to use expression analysis to prioritize the genes within the region of interest. This experimental design is based on the hypothesis that tumor-suppressor genes demonstrate decreased expression in tumors compared to normals. Herein, we narrow the region of interest using deletion mapping data and employ expression analysis to prioritize the genes in the minimal deleted region. Highly informative polymorphic markers spanning our region were used to assess for loss of heterozygosity in 99 tumor and normal DNA pairs. The minimal region of deletion was determined to be approximately 500 kb bounded by D12S391 and A002Q26. Publically available databases place 7 genes within this minimal deletion region. An additional 3 genes lie just outside this minimal deletion region and could possibly be inactivated by deletion of promoter, 3'-untranslated region sequences or alternative splice variants. Relative levels of expression of these 10 candidate genes were determined in 6 normal prostates, 5 local prostate tumors, 9 prostate lymph node metastases, 6 prostate cancer cell lines and 12 prostate cancer xenografts using quantitative RT-PCR. DUSP16, FLJ10298 and BCLG were significantly downregulated in both clinical tumors and cultured prostate cancer tissue, indicating that one or all may be critical to initiation or progression of prostate carcinoma.
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16911351
[ "Clinical", "characterization", "and", "evaluation", "of", "DYT1", "gene", "in", "Indian", "primary", "dystonia", "patients." ]
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Clinical characterization and evaluation of DYT1 gene in Indian primary dystonia patients.
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18813858
[ "Novel", "mutations", "in", "the", "IRF6", "gene", "in", "Brazilian", "families", "with", "Van", "der", "Woude", "syndrome." ]
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Novel mutations in the IRF6 gene in Brazilian families with Van der Woude syndrome.
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18398821
[ "Breast", "carcinomas", "are", "characterized", "by", "DNA", "copy", "number", "alterations", "(CNAs)", "with", "biological", "and", "clinical", "significance.", "This", "explorative", "study", "integrated", "CNA,", "expression,", "and", "germline", "genotype", "data", "of", "112", "early-stage", "breast", "cancer", "patients.", "Recurrent", "CNAs", "differed", "substantially", "between", "tumor", "subtypes", "classified", "according", "to", "expression", "pattern.", "Deletion", "of", "16q", "was", "overrepresented", "in", "Luminal", "A,", "and", "a", "predictor", "of", "good", "prognosis,", "both", "overall", "and", "for", "the", "nonluminal", "A", "subgroups.", "The", "deleted", "region", "most", "significantly", "associated", "with", "survival", "mapped", "to", "16q22.2,", "harboring", "the", "genes", "TXNL4B", "and", "DXH38,", "whose", "expression", "was", "strongly", "correlated", "with", "the", "deletion.", "The", "area", "most", "frequently", "deleted", "resided", "on", "16q23.1,", "3.5", "MB", "downstream", "of", "the", "area", "most", "significantly", "associated", "with", "survival,", "and", "included", "the", "tumor", "suppressor", "gene", "ADAMTS18", "and", "the", "cell", "recognition", "gene", "CNTNAP4.", "Whole-genome", "association", "analysis", "identified", "germline", "single", "nucleotide", "polymorphisms", "(SNPs)", "and", "their", "corresponding", "haplotypes,", "residing", "on", "several", "different", "chromosomes,", "to", "be", "associated", "with", "deletion", "of", "16q.", "The", "genes", "where", "these", "SNPs", "reside", "encode", "proteins", "involved", "in", "the", "extracellular", "matrix", "(CHST3", "and", "SPOCK2),", "in", "regulation", "of", "the", "cell", "cycle", "(JMY,", "PTPRN2,", "and", "Cwf19L2)", "and", "chromosome", "stability", "(KPNB1)." ]
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Breast carcinomas are characterized by DNA copy number alterations (CNAs) with biological and clinical significance. This explorative study integrated CNA, expression, and germline genotype data of 112 early-stage breast cancer patients. Recurrent CNAs differed substantially between tumor subtypes classified according to expression pattern. Deletion of 16q was overrepresented in Luminal A, and a predictor of good prognosis, both overall and for the nonluminal A subgroups. The deleted region most significantly associated with survival mapped to 16q22.2, harboring the genes TXNL4B and DXH38, whose expression was strongly correlated with the deletion. The area most frequently deleted resided on 16q23.1, 3.5 MB downstream of the area most significantly associated with survival, and included the tumor suppressor gene ADAMTS18 and the cell recognition gene CNTNAP4. Whole-genome association analysis identified germline single nucleotide polymorphisms (SNPs) and their corresponding haplotypes, residing on several different chromosomes, to be associated with deletion of 16q. The genes where these SNPs reside encode proteins involved in the extracellular matrix (CHST3 and SPOCK2), in regulation of the cell cycle (JMY, PTPRN2, and Cwf19L2) and chromosome stability (KPNB1).
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21904390
[ "Two", "novel", "mutations", "of", "the", "PAX6", "gene", "causing", "different", "phenotype", "in", "a", "cohort", "of", "Chinese", "patients." ]
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Two novel mutations of the PAX6 gene causing different phenotype in a cohort of Chinese patients.
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19808398
[ "BACKGROUND:", "Increased", "susceptibility", "to", "dilated", "cardiomyopathy", "has", "been", "observed", "in", "patients", "carrying", "mutations", "in", "the", "SCN5A", "gene,", "but", "the", "underlying", "mechanism", "remains", "unclear.", "In", "this", "study,", "we", "identified", "and", "characterized,", "both", "in", "vitro", "and", "clinically,", "an", "SCN5A", "mutation", "associated", "with", "familial", "progressive", "atrioventricular", "block", "of", "adult", "onset", "and", "dilated", "cardiomyopathy", "in", "a", "Chinese", "family.", "METHODS", "AND", "RESULTS:", "Among", "32", "family", "members,", "5", "were", "initially", "diagnosed", "with", "atrioventricular", "block", "after", "age", "30;", "4", "were", "studied,", "3", "of", "whom", "later", "developed", "dilated", "cardiomyopathy.", "We", "found", "a", "heterozygous", "single-nucleotide", "mutation", "resulting", "in", "an", "amino", "acid", "substitution", "(", "A1180V", ")", "in", "all", "studied", "patients", "and", "in", "6", "other", "younger", "unaffected", "members", "but", "not", "in", "200", "control", "chromosomes.", "When", "expressed", "with", "the", "beta1", "subunit,", "the", "mutated", "channels", "exhibited", "a", "-4.5-mV", "shift", "of", "inactivation", "with", "slower", "recovery", "leading", "to", "a", "rate-dependent", "Na(+)", "current", "reduction", "and", "a", "moderate", "increase", "in", "late", "Na(+)", "current.", "Clinical", "study", "revealed", "that", "although", "QRS", "duration", "decreased", "with", "increasing", "heart", "rate", "in", "noncarrier", "family", "members,", "this", "change", "was", "blunted", "in", "unaffected", "carriers", "whose", "ECG", "and", "heart", "function", "were", "normal.", "Resting", "corrected", "QT", "interval", "of", "unaffected", "carriers", "was", "significantly", "longer", "than", "that", "of", "noncarriers,", "even", "though", "it", "was", "still", "within", "the", "normal", "range.", "CONCLUSIONS:", "A1180V", " ", "expresses", "a", "mild", "Na(+)", "channel", "phenotype", "in", "vitro", "and", "a", "corresponding", "clinical", "phenotype", "in", "unaffected", "mutation", "carriers,", "implying", "that", "A1180V", " ", "caused", "structural", "heart", "disease", "in", "affected", "carriers", "by", "disturbing", "Na(+)", "influx", "and,", "hence,", "cellular", "Na(+)", "homeostasis.", "The", "high", "penetrance", "of", "A1180V", " ", "suggests", "this", "phenotype", "as", "a", "high", "risk", "factor", "for", "dilated", "cardiomyopathy", "with", "preceding", "atrioventricular", "block." ]
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BACKGROUND: Increased susceptibility to dilated cardiomyopathy has been observed in patients carrying mutations in the SCN5A gene, but the underlying mechanism remains unclear. In this study, we identified and characterized, both in vitro and clinically, an SCN5A mutation associated with familial progressive atrioventricular block of adult onset and dilated cardiomyopathy in a Chinese family. METHODS AND RESULTS: Among 32 family members, 5 were initially diagnosed with atrioventricular block after age 30; 4 were studied, 3 of whom later developed dilated cardiomyopathy. We found a heterozygous single-nucleotide mutation resulting in an amino acid substitution ( A1180V ) in all studied patients and in 6 other younger unaffected members but not in 200 control chromosomes. When expressed with the beta1 subunit, the mutated channels exhibited a -4.5-mV shift of inactivation with slower recovery leading to a rate-dependent Na(+) current reduction and a moderate increase in late Na(+) current. Clinical study revealed that although QRS duration decreased with increasing heart rate in noncarrier family members, this change was blunted in unaffected carriers whose ECG and heart function were normal. Resting corrected QT interval of unaffected carriers was significantly longer than that of noncarriers, even though it was still within the normal range. CONCLUSIONS: A1180V expresses a mild Na(+) channel phenotype in vitro and a corresponding clinical phenotype in unaffected mutation carriers, implying that A1180V caused structural heart disease in affected carriers by disturbing Na(+) influx and, hence, cellular Na(+) homeostasis. The high penetrance of A1180V suggests this phenotype as a high risk factor for dilated cardiomyopathy with preceding atrioventricular block.
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17083016
[ "Genetic", "polymorphism", "of", "the", "binding", "domain", "of", "surfactant", "protein-A2", "increases", "susceptibility", "to", "meningococcal", "disease." ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
Genetic polymorphism of the binding domain of surfactant protein-A2 increases susceptibility to meningococcal disease.
[ 2, 3299, 8218, 1927, 1920, 2743, 3418, 1927, 14531, 2213, 17, 8595, 4041, 6461, 1942, 10286, 11748, 2573, 18, 3 ]
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[ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 ]
[ -100, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -100 ]
22174939
[]
[]
[ 2, 3 ]
[ 0, 0 ]
[ 1, 1 ]
[ -100, -100 ]
16379540
[ "Mutations", "of", "CFTR", "gene", "are", "responsible", "for", "cystic", "fibrosis", "(CF)", "and", "other", "clinical", "conditions", "such", "as", "congenital", "absence", "of", "the", "vas", "deferens", "(CAVD),", "chronic", "pancreatitis", "(IP),", "and", "idiopathic", "disseminated", "bronchiectasis", "(DBE)", "classified", "as", "CFTR-related", "disorders.", "The", "PCR/OLA", "assay", "is", "designed", "to", "detect", "31", "known", "mutations", "including", "the", "24", "most", "common", "CF", "mutations", "worldwide,", "as", "identified", "by", "the", "CF", "Consortium.", "In", "order", "to", "define", "the", "CFTR", "genotype", "a", "series", "of", "1812", "individuals", "from", "central-southern", "Italy", "with", "and", "without", "CF", "manifestations", "were", "screened", "by", "using", "the", "PCR/OLA", "assay.", "Here", "we", "report", "the", "description", "of", "five", "cases", "of", "anomalous", "electropherograms", "obtained", "after", "PCR/OLA", "analysis,", "that", "led", "to", "the", "identification,", "in", "the", "homozygous", "state,", "of", "two", "point", "mutations", "(", "D110H", " ", "and", "S589N", ")", "not", "included", "in", "the", "assay", "test", "panel,", "a", "large", "gene", "deletion", "(CFTR", "del14b_17b", "),", "and", "an", "exonic", "polymorphism", "(", "c.4002A", ">", "G", ").", "Haplotype", "and", "real", "time", "PCR", "analysis", "were", "also", "performed", "in", "the", "subject", "carrying", "the", "large", "CFTR", "deletion.", "The", "study", "demonstrates", "that", "the", "PCR/OLA", "assay,", "besides", "being", "an", "efficient", "and", "user-friendly", "method", "to", "screen", "known", "mutations", "in", "the", "CFTR", "gene,", "may", "also", "function", "as", "a", "mutation/polymorphism-scanning", "assay,", "at", "least", "for", "certain", "nucleotide", "changes", "located", "in", "some", "critical", "regions", "of", "the", "gene." ]
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Mutations of CFTR gene are responsible for cystic fibrosis (CF) and other clinical conditions such as congenital absence of the vas deferens (CAVD), chronic pancreatitis (IP), and idiopathic disseminated bronchiectasis (DBE) classified as CFTR-related disorders. The PCR/OLA assay is designed to detect 31 known mutations including the 24 most common CF mutations worldwide, as identified by the CF Consortium. In order to define the CFTR genotype a series of 1812 individuals from central-southern Italy with and without CF manifestations were screened by using the PCR/OLA assay. Here we report the description of five cases of anomalous electropherograms obtained after PCR/OLA analysis, that led to the identification, in the homozygous state, of two point mutations ( D110H and S589N ) not included in the assay test panel, a large gene deletion (CFTR del14b_17b ), and an exonic polymorphism ( c.4002A > G ). Haplotype and real time PCR analysis were also performed in the subject carrying the large CFTR deletion. The study demonstrates that the PCR/OLA assay, besides being an efficient and user-friendly method to screen known mutations in the CFTR gene, may also function as a mutation/polymorphism-scanning assay, at least for certain nucleotide changes located in some critical regions of the gene.
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19929939
[ "Multiple", "trichoepitheliomas--a", "novel", "mutation", "in", "the", "CYLD", "gene." ]
[ 0, 0, 0, 0, 0, 0, 0, 0 ]
Multiple trichoepitheliomas--a novel mutation in the CYLD gene.
[ 2, 3137, 10477, 6802, 10984, 20536, 12191, 4956, 17, 17, 43, 4008, 3979, 1922, 1920, 11768, 1007, 2359, 18, 3 ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
[ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 ]
[ -100, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -100 ]
21030903
[ "Recombinant", "phenotyping", "of", "cytomegalovirus", "sequence", "variants", "detected", "after", "200", "or", "100", "days", "of", "valganciclovir", "prophylaxis." ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
Recombinant phenotyping of cytomegalovirus sequence variants detected after 200 or 100 days of valganciclovir prophylaxis.
[ 2, 5752, 24485, 1927, 21110, 3244, 4936, 3330, 2256, 2191, 2014, 2813, 3000, 1927, 2326, 6115, 3349, 2223, 14127, 12725, 18, 3 ]
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[ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1 ]
[ -100, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, -100 ]
16046395
[ "As", "a", "primary", "target", "for", "opioid", "drugs", "and", "peptides,", "the", "mu", "opioid", "receptor", "(OPRM1)", "plays", "a", "key", "role", "in", "pain", "perception", "and", "addiction.", "Genetic", "variants", "of", "OPRM1", "have", "been", "implicated", "in", "predisposition", "to", "drug", "addiction,", "in", "particular", "the", "single", "nucleotide", "polymorphism", "A118G", ",", "leading", "to", "an", "N40D", " ", "substitution,", "with", "an", "allele", "frequency", "of", "10-32%,", "and", "uncertain", "functions.", "We", "have", "measured", "allele-specific", "mRNA", "expression", "of", "OPRM1", "in", "human", "autopsy", "brain", "tissues,", "using", "A118G", " ", "as", "a", "marker.", "In", "8", "heterozygous", "samples", "measured,", "the", "A118", "mRNA", "allele", "was", "1.5-2.5-fold", "more", "abundant", "than", "the", "G118", "allele.", "Transfection", "into", "Chinese", "hamster", "ovary", "cells", "of", "a", "cDNA", "representing", "only", "the", "coding", "region", "of", "OPRM1,", "carrying", "adenosine,", "guanosine,", "cytidine,", "and", "thymidine", "in", "position", "118,", "resulted", "in", "1.5-fold", "lower", "mRNA", "levels", "only", "for", "OPRM1-G118,", "and", "more", "than", "10-fold", "lower", "OPRM1", "protein", "levels,", "measured", "by", "Western", "blotting", "and", "receptor", "binding", "assay.", "After", "transfection", "and", "inhibition", "of", "transcription", "with", "actinomycin", "D,", "analysis", "of", "mRNA", "turnover", "failed", "to", "reveal", "differences", "in", "mRNA", "stability", "between", "A118", "and", "G118", "alleles,", "indicating", "a", "defect", "in", "transcription", "or", "mRNA", "maturation.", "These", "results", "indicate", "that", "OPRM1-G118", "is", "a", "functional", "variant", "with", "deleterious", "effects", "on", "both", "mRNA", "and", "protein", "yield.", "Clarifying", "the", "functional", "relevance", "of", "polymorphisms", "associated", "with", "susceptibility", "to", "a", "complex", "disorder", "such", "as", "drug", "addiction", "provides", "a", "foundation", "for", "clinical", "association", "studies." ]
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As a primary target for opioid drugs and peptides, the mu opioid receptor (OPRM1) plays a key role in pain perception and addiction. Genetic variants of OPRM1 have been implicated in predisposition to drug addiction, in particular the single nucleotide polymorphism A118G , leading to an N40D substitution, with an allele frequency of 10-32%, and uncertain functions. We have measured allele-specific mRNA expression of OPRM1 in human autopsy brain tissues, using A118G as a marker. In 8 heterozygous samples measured, the A118 mRNA allele was 1.5-2.5-fold more abundant than the G118 allele. Transfection into Chinese hamster ovary cells of a cDNA representing only the coding region of OPRM1, carrying adenosine, guanosine, cytidine, and thymidine in position 118, resulted in 1.5-fold lower mRNA levels only for OPRM1-G118, and more than 10-fold lower OPRM1 protein levels, measured by Western blotting and receptor binding assay. After transfection and inhibition of transcription with actinomycin D, analysis of mRNA turnover failed to reveal differences in mRNA stability between A118 and G118 alleles, indicating a defect in transcription or mRNA maturation. These results indicate that OPRM1-G118 is a functional variant with deleterious effects on both mRNA and protein yield. Clarifying the functional relevance of polymorphisms associated with susceptibility to a complex disorder such as drug addiction provides a foundation for clinical association studies.
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19132389
[]
[]
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18241046
[ "A", "human", "phospholamban", "promoter", "polymorphism", "in", "dilated", "cardiomyopathy", "alters", "transcriptional", "regulation", "by", "glucocorticoids." ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
A human phospholamban promoter polymorphism in dilated cardiomyopathy alters transcriptional regulation by glucocorticoids.
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19298002
[]
[]
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14742428
[]
[]
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21219851
[ "A", "novel", "mutation", "screening", "system", "for", "Ehlers-Danlos", "Syndrome,", "vascular", "type", "by", "high-resolution", "melting", "curve", "analysis", "in", "combination", "with", "small", "amplicon", "genotyping", "using", "genomic", "DNA." ]
[ 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0 ]
A novel mutation screening system for Ehlers-Danlos Syndrome, vascular type by high-resolution melting curve analysis in combination with small amplicon genotyping using genomic DNA.
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15481887
[ "Two", "new", "beta-chain", "variants:", "Hb", "Tripoli", "[beta26(B8)", "Glu-->Ala", "]", "and", "Hb", "Tizi-Ouzou", "[beta29(B11)", "Gly-->Ser", "]." ]
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Two new beta-chain variants: Hb Tripoli [beta26(B8) Glu-->Ala ] and Hb Tizi-Ouzou [beta29(B11) Gly-->Ser ].
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12729343
[ "SETTING:", "Nrampl", "encoded", "by", "the", "NRAMP1", "gene", "influences", "the", "phagolysosomal", "function", "of", "alveolar", "macrophage", "against", "Mycobacterium", "tuberculosis.", "Genetic", "polymorphisms", "of", "NRAMP1", "affect", "innate", "host", "resistance", "through", "the", "defective", "production", "and", "function", "of", "Nrampl.", "OBJECTIVE:", "To", "investigate", "this", "relationship,", "the", "NRAMP1", "polymorphisms", "in", "patients", "with", "tuberculous", "pleurisy", "were", "determined.", "DESIGN:", "Pleural", "biopsy", "proven", "56", "patients", "were", "designated", "to", "the", "pleurisy", "group", "and", "45", "healthy", "adults", "were", "designated", "to", "the", "healthy", "control", "group.", "Three", "NRAMP1", "polymorphisms", "such", "as", "single", "nucleotide", "change", "in", "intron", "4(", "469", "+", "14G/C", ",", "INT4),", "a", "non-conservative", "single-base", "substitution", "at", "codon", "543(", "D543N", ")", "and", "TGTG", "deletion", "in", "the", "3'", "untranslated", "region", "(", "1729", "+", "55del4", ",", "3'UTR)", "were", "determined.", "RESULTS:", "The", "frequencies", "of", "mutant", "genotypes", "of", "INT4", "and", "3'UTR", "were", "significantly", "high", "in", "the", "pleurisy", "group", "(P", "=", "0.01,", "P", "=", "0.02),", "but", "the", "frequencies", "of", "D543N", " ", "were", "not", "significantly", "different", "between", "the", "two", "groups.", "Odds", "ratios", "(OR),", "which", "are", "a", "comparison", "of", "the", "wild", "with", "the", "mutant", "genotype,", "were", "8.02", "(95%CI", "2.42", "approximately", "26.57)", "for", "INT4", "and", "5.73", "(95%CI", "1.14", "approximately", "28.92)", "for", "3'UTR", "which", "were", "statistically", "significant.", "In", "the", "combined", "analysis", "of", "the", "INT4", "and", "3'UTR,", "the", "ORs", "were", "6.00", "(95%CI", "1.46", "approximately", "24.64)", "for", "GC/++", "genotype", "and", "14.00", "(95%CI", "1.61", "approximately", "121.75)", "for", "GC/+del", "when", "compared", "with", "GG/++;", "these", "differences", "were", "statistically", "significant.", "CONCLUSION:", "The", "NRAMP1", "genetic", "polymorphisms,", "especially", "INT4", "and", "3'UTR,", "were", "closely", "related", "to", "tuberculous", "pleurisy." ]
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SETTING: Nrampl encoded by the NRAMP1 gene influences the phagolysosomal function of alveolar macrophage against Mycobacterium tuberculosis. Genetic polymorphisms of NRAMP1 affect innate host resistance through the defective production and function of Nrampl. OBJECTIVE: To investigate this relationship, the NRAMP1 polymorphisms in patients with tuberculous pleurisy were determined. DESIGN: Pleural biopsy proven 56 patients were designated to the pleurisy group and 45 healthy adults were designated to the healthy control group. Three NRAMP1 polymorphisms such as single nucleotide change in intron 4( 469 + 14G/C , INT4), a non-conservative single-base substitution at codon 543( D543N ) and TGTG deletion in the 3' untranslated region ( 1729 + 55del4 , 3'UTR) were determined. RESULTS: The frequencies of mutant genotypes of INT4 and 3'UTR were significantly high in the pleurisy group (P = 0.01, P = 0.02), but the frequencies of D543N were not significantly different between the two groups. Odds ratios (OR), which are a comparison of the wild with the mutant genotype, were 8.02 (95%CI 2.42 approximately 26.57) for INT4 and 5.73 (95%CI 1.14 approximately 28.92) for 3'UTR which were statistically significant. In the combined analysis of the INT4 and 3'UTR, the ORs were 6.00 (95%CI 1.46 approximately 24.64) for GC/++ genotype and 14.00 (95%CI 1.61 approximately 121.75) for GC/+del when compared with GG/++; these differences were statistically significant. CONCLUSION: The NRAMP1 genetic polymorphisms, especially INT4 and 3'UTR, were closely related to tuberculous pleurisy.
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18791947
[ "A", "case", "of", "Bernard-Soulier", "Syndrome", "due", "to", "a", "homozygous", "four", "bases", "deletion", "(TGAG)", "of", "GPIbalpha", "gene:", "lack", "of", "GPIbalpha", "but", "absence", "of", "bleeding." ]
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A case of Bernard-Soulier Syndrome due to a homozygous four bases deletion (TGAG) of GPIbalpha gene: lack of GPIbalpha but absence of bleeding.
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19444361
[ "COL3A1", "2209G>A", " ", "is", "a", "predictor", "of", "pelvic", "organ", "prolapse." ]
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COL3A1 2209G>A is a predictor of pelvic organ prolapse.
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21904390
[]
[]
[ 2, 3 ]
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16152606
[ "Nijmegen", "breakage", "syndrome", "(NBS)", "is", "a", "human", "autosomal", "recessive", "disease", "characterized", "by", "genomic", "instability", "and", "enhanced", "cancer", "predisposition,", "in", "particular", "to", "lymphoma", "and", "leukemia.", "Recently,", "significantly", "higher", "frequencies", "of", "heterozygous", "carriers", "of", "the", "Slavic", "founder", "NBS1", "mutation,", "657del5", ",", "were", "found", "in", "Russian", "children", "with", "sporadic", "lymphoid", "malignancies,", "and", "in", "Polish", "adults", "with", "non-Hodgkin", "lymphoma", "(NHL).", "In", "addition,", "the", "substitution", "643C>T", " ", "(", "R215W", ")", "has", "also", "been", "found", "in", "excess", "among", "children", "with", "acute", "lymphoblastic", "leukemia", "(ALL).", "In", "an", "attempt", "to", "asses", "the", "contribution", "of", "both", "mutations", "to", "the", "development", "of", "sporadic", "lymphoid", "malignancies,", "we", "analyzed", "DNA", "samples", "from", "a", "large", "group", "of", "Polish", "pediatric", "patients.", "The", "NBS1", "mutation", "657del5", " ", "on", "one", "allele", "was", "found", "in", "3", "of", "270", "patients", "with", "ALL", "and", "2", "of", "212", "children", "and", "adolescents", "with", "NHL;", "no", "carrier", "was", "found", "among", "63", "patients", "with", "Hodgkin", "lymphoma", "(HL).", "No", "carriers", "of", "the", "variant", "R215W", " ", "were", "detected", "in", "any", "studied", "group.", "The", "relative", "frequency", "of", "the", "657del5", " ", "mutation", "was", "calculated", "from", "a", "total", "of", "6,984", "controls", "matched", "by", "place", "of", "patient", "residence,", "of", "whom", "42", "were", "found", "to", "be", "carriers", "(frequency", "=", "0.006).", "In", "the", "analyzed", "population", "with", "malignancies,", "an", "increased", "odds", "ratio", "for", "the", "occurrence", "of", "mutation", "657del5", " ", "was", "found", "in", "comparison", "with", "the", "control", "Polish", "population", "(OR", "range", "1.48-1.85,", "95%", "confidence", "interval", "1.18-2.65).", "This", "finding", "indicates", "that", "the", "frequency", "of", "the", "mutation", "carriers", "was", "indeed", "increased", "in", "patients", "with", "ALL", "and", "NHL", "(p", "<", "0.05).", "Nonetheless,", "NBS1", "gene", "heterozygosity", "is", "not", "a", "major", "risk", "factor", "for", "lymphoid", "malignancies", "in", "childhood", "and", "adolescence." ]
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Nijmegen breakage syndrome (NBS) is a human autosomal recessive disease characterized by genomic instability and enhanced cancer predisposition, in particular to lymphoma and leukemia. Recently, significantly higher frequencies of heterozygous carriers of the Slavic founder NBS1 mutation, 657del5 , were found in Russian children with sporadic lymphoid malignancies, and in Polish adults with non-Hodgkin lymphoma (NHL). In addition, the substitution 643C>T ( R215W ) has also been found in excess among children with acute lymphoblastic leukemia (ALL). In an attempt to asses the contribution of both mutations to the development of sporadic lymphoid malignancies, we analyzed DNA samples from a large group of Polish pediatric patients. The NBS1 mutation 657del5 on one allele was found in 3 of 270 patients with ALL and 2 of 212 children and adolescents with NHL; no carrier was found among 63 patients with Hodgkin lymphoma (HL). No carriers of the variant R215W were detected in any studied group. The relative frequency of the 657del5 mutation was calculated from a total of 6,984 controls matched by place of patient residence, of whom 42 were found to be carriers (frequency = 0.006). In the analyzed population with malignancies, an increased odds ratio for the occurrence of mutation 657del5 was found in comparison with the control Polish population (OR range 1.48-1.85, 95% confidence interval 1.18-2.65). This finding indicates that the frequency of the mutation carriers was indeed increased in patients with ALL and NHL (p < 0.05). Nonetheless, NBS1 gene heterozygosity is not a major risk factor for lymphoid malignancies in childhood and adolescence.
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Maple syrup urine disease (MSUD) results from mutations affecting different subunits of the mitochondrial branched-chain alpha-ketoacid dehydrogenase complex. In this study, we identified seven novel mutations in MSUD patients from Israel. These include C219W -alpha (TGC to TGG) in the E1alpha subunit; H156Y -beta (CAT to TAT), V69G -beta (GTT to GGT), IVS 9 del[-7:-4] , and 1109 ins 8bp (exon 10) in the E1beta subunit; and H391R (CAC to CGC) and S133stop (TCA to TGA) affecting the E2 subunit of the branched-chain alpha-ketoacid dehydrogenase complex. Recombinant E1 proteins carrying the C219W -alpha or H156Y -beta mutation show no catalytic activity with defective subunit assembly and reduced binding affinity for cofactor thiamin diphosphate. The mutant E1 harboring the V69G -beta substitution cannot be expressed, suggesting aberrant folding caused by this mutation. These E1 mutations are ubiquitously associated with the classic phenotype in homozygous-affected patients. The H391R substitution in the E2 subunit abolishes the key catalytic residue that functions as a general base in the acyltransfer reaction, resulting in a completely inactive E2 component. However, wild-type E1 activity is enhanced by E1 binding to this full-length mutant E2 in vitro. We propose that the augmented E1 activity is responsible for robust thiamin responsiveness in homozygous patients carrying the H391R E2 mutation and that the presence of a full-length mutant E2 is diagnostic of this MSUD phenotype. The present results offer a structural and biochemical basis for these novel mutations and will facilitate DNA-based diagnosis for MSUD in the Israeli population.
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17065190
[ "OBJECTIVES:", "Polymyositis", "(PM)", "and", "dermatomyositis", "(DM)", "form", "part", "of", "the", "idiopathic", "inflammatory", "myopathies", "(IIMs).", "The", "chemokine", "monocyte", "chemotactic", "protein-1", "(MCP-1)", "is", "expressed", "at", "sites", "of", "the", "T", "cell", "inflammatory", "response", "in", "the", "IIMs.", "We", "thus", "investigate", "whether", "genetic", "markers", "in", "the", "MCP-1", "gene", "confer", "disease", "susceptibility", "for", "the", "development", "of", "PM", "and", "DM.", "METHODS:", "DNA", "samples", "were", "analysed", "from", "a", "group", "of", "195", "UK", "Caucasian", "IIM", "patients,", "comprising", "103", "PM", "and", "92", "DM.", "Their", "results", "were", "compared", "with", "those", "of", "162", "ethnically", "matched", "controls.", "The", "polymorphic", "positions", "of", "three", "single", "nucleotide", "polymorphisms", "(SNPs)", "and", "one", "insertion-deletion", "sequence", "within", "regions", "coding", "for", "MCP-1", "were", "tested.", "The", "SNPs", "examined", "were", "located", "in", "intron", "1", "(", "rs2857657", ",", "C/G", "),", "exon", "2", "(", "rs4586", ",", "A/G", ")", "and", "the", "3", "'", "untranslated", "region", "(", "rs13900", ",", "C/T", ").", "The", "insertion-deletion", "sequence", "was", "located", "in", "intron", "1", "(", "rs3917887", ",", "AGCTCCTCCTTCTC/-", ").", "Each", "SNP", "was", "tested", "for", "Hardy-Weinberg", "equilibrium", "and", "allelic/genotypic", "associations.", "Haplotype", "frequencies", "were", "estimated", "using", "the", "Expectation/Maximization", "algorithm.", "RESULTS:", "There", "was", "strong", "linkage", "disequilibrium", "present", "between", "three", "out", "of", "these", "four", "markers.", "The", "majority", "of", "controls", "were", "in", "Hardy", "Weinberg", "equilibrium.", "No", "allelic,", "genotypic", "or", "haplotypic", "associations", "were", "detected", "when", "comparing", "PM", "or", "DM", "cases", "to", "controls,", "or", "when", "PM", "and", "DM", "were", "compared", "with", "each", "other.", "CONCLUSIONS:", "Genetic", "markers", "in", "the", "MCP-1", "gene", "do", "not", "demonstrate", "significant", "genetic", "associations", "with", "the", "IIMs,", "and", "do", "not", "discriminate", "PM", "from", "DM", "in", "a", "UK", "Caucasian", "population." ]
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OBJECTIVES: Polymyositis (PM) and dermatomyositis (DM) form part of the idiopathic inflammatory myopathies (IIMs). The chemokine monocyte chemotactic protein-1 (MCP-1) is expressed at sites of the T cell inflammatory response in the IIMs. We thus investigate whether genetic markers in the MCP-1 gene confer disease susceptibility for the development of PM and DM. METHODS: DNA samples were analysed from a group of 195 UK Caucasian IIM patients, comprising 103 PM and 92 DM. Their results were compared with those of 162 ethnically matched controls. The polymorphic positions of three single nucleotide polymorphisms (SNPs) and one insertion-deletion sequence within regions coding for MCP-1 were tested. The SNPs examined were located in intron 1 ( rs2857657 , C/G ), exon 2 ( rs4586 , A/G ) and the 3 ' untranslated region ( rs13900 , C/T ). The insertion-deletion sequence was located in intron 1 ( rs3917887 , AGCTCCTCCTTCTC/- ). Each SNP was tested for Hardy-Weinberg equilibrium and allelic/genotypic associations. Haplotype frequencies were estimated using the Expectation/Maximization algorithm. RESULTS: There was strong linkage disequilibrium present between three out of these four markers. The majority of controls were in Hardy Weinberg equilibrium. No allelic, genotypic or haplotypic associations were detected when comparing PM or DM cases to controls, or when PM and DM were compared with each other. CONCLUSIONS: Genetic markers in the MCP-1 gene do not demonstrate significant genetic associations with the IIMs, and do not discriminate PM from DM in a UK Caucasian population.
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16216473
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18838613
[ "A", "comprehensive", "analysis", "of", "the", "CDKN2A", "gene", "in", "childhood", "acute", "lymphoblastic", "leukemia", "reveals", "genomic", "deletion,", "copy", "number", "neutral", "loss", "of", "heterozygosity,", "and", "association", "with", "specific", "cytogenetic", "subgroups." ]
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A comprehensive analysis of the CDKN2A gene in childhood acute lymphoblastic leukemia reveals genomic deletion, copy number neutral loss of heterozygosity, and association with specific cytogenetic subgroups.
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21546516
[ "The", "57", "kb", "deletion", "in", "cystinosis", "patients", "extends", "into", "TRPV1", "causing", "dysregulation", "of", "transcription", "in", "peripheral", "blood", "mononuclear", "cells." ]
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The 57 kb deletion in cystinosis patients extends into TRPV1 causing dysregulation of transcription in peripheral blood mononuclear cells.
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16277682
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Mutations of the p62/Sequestosome 1 gene (p62/SQSTM1) account for both sporadic and familial forms of Paget's disease of bone (PDB). We originally described a methionine-->valine substitution at codon 404 ( M404V ) of exon 8, in the ubiquitin protein-binding domain of p62/SQSTM1 gene in an Italian PDB patient. The collection of data from the patient's pedigree provided evidence for a familial form of PDB. Extension of the genetic analysis to other relatives in this family demonstrated segregation of the M404V mutation with the polyostotic PDB phenotype and provided the identification of six asymptomatic gene carriers. DNA for mutational analysis of the exon 8 coding sequence was obtained from 22 subjects, 4 PDB patients and 18 clinically unaffected members. Of the five clinically ascertained affected members of the family, four possessed the M404V mutation and exhibited the polyostotic form of PDB, except one patient with a single X-ray-assessed skeletal localization and one with a polyostotic disease who had died several years before the DNA analysis. By both reconstitution and mutational analysis of the pedigree, six unaffected subjects were shown to bear the M404V mutation, representing potential asymptomatic gene carriers whose circulating levels of alkaline phosphatase were recently assessed as still within the normal range. Taken together, these results support a genotype-phenotype correlation between the M404V mutation in the p62/SQSTM1 gene and a polyostotic form of PDB in this family. The high penetrance of the PDB trait in this family together with the study of the asymptomatic gene carriers will allow us to confirm the proposed genotype-phenotype correlation and to evaluate the potential use of mutational analysis of the p62/SQSTM1 gene in the early detection of relatives at risk for PDB.
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17185385
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Unusual forms of amyotrophic lateral sclerosis (ALS-G), Parkinsonism dementia complex (PDC-G) and Guam dementia (GD) are found in Chamorros, the indigenous people of Guam. Neurofibrillary tangles composed of hyperphosphorylated tau are a neuropathologic feature of these closely related disorders. To determine if variation in the gene that encodes microtubule-associated protein tau gene (MAPT) contributes to risk for these disorders, we genotyped nine single nucleotide polymorphism (SNP) sites and one insertion/deletion in the 5' end of MAPT in 54 ALS-G, 135 PDC-G, 153 GD and 258 control subjects, all of whom are Chamorros. Variation at three SNPs (sites 2, 6 and 9) influenced risk for ALS-G, PDC-G and GD. SNP2 acts through a dominant mechanism and is independent of the risk conferred by SNPs 6 and 9, the latter two acting by a recessive mechanism. Persons with the high-risk SNP6 and SNP9 AC/AC diplotype had an increased risk of 3-fold [95% confidence interval (CI)=1.10-8.25] for GD, 4-fold (95% CI=1.40-11.64) for PDC-G and 6-fold (95% CI=1.44-32.14) for ALS-G, compared to persons with other diplotypes after adjusting for SNP2. Carriers of the SNP2 G allele had an increased risk of 1.6-fold (95% CI=1.00-2.62) for GD, 2-fold (95% CI=1.28-3.66) for PDC-G, and 1.5-fold (95% CI=0.74-3.00) for ALS-G, compared to non-carriers after adjusting for SNPs 6 and 9. Others have shown that SNP6 is also associated with risk for progressive supranuclear palsy. These two independent cis-acting sites presumably influence risk for Guam neuro-degenerative disorders by regulating MAPT expression.
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14568816
[ "OBJECTIVES:", "To", "document", "2", "apparently", "incongruous", "clinical", "disorders", "occurring", "in", "the", "same", "infant:", "congenital", "myopathy", "with", "myophosphorylase", "deficiency", "(McArdle", "disease)", "and", "mitochondrial", "hepatopathy", "with", "liver", "failure", "and", "mitochondrial", "DNA", "depletion.", "METHODS:", "An", "infant", "girl", "born", "to", "consanguineous", "Moroccan", "parents", "had", "severe", "congenital", "hypotonia", "and", "hepatomegaly,", "developed", "liver", "failure,", "and", "died", "at", "5", "months", "of", "age.", "We", "studied", "muscle", "and", "liver", "biopsy", "specimens", "histochemically", "and", "biochemically,", "and", "we", "sequenced", "the", "whole", "coding", "regions", "of", "the", "deoxyguanosine", "kinase", "(dGK)", "and", "myophosphorylase", "(PYGM)", "genes.", "RESULTS:", "Muscle", "biopsy", "specimens", "showed", "subsarcolemmal", "glycogen", "accumulation", "and", "negative", "histochemical", "reaction", "for", "phosphorylase.", "Liver", "biopsy", "specimens", "showed", "micronodular", "cirrhosis", "and", "massive", "mitochondrial", "proliferation.", "Biochemical", "analysis", "showed", "phosphorylase", "deficiency", "in", "muscle", "and", "cytochrome", "c", "oxidase", "deficiency", "in", "liver.", "We", "identified", "a", "novel", "homozygous", "missense", "G-to-A", "mutation", "at", "codon", "456", "in", "exon", "11", "of", "PYGM,", "as", "well", "as", "a", "homozygous", "4-base", "pair", "GATT", "duplication", "(nucleotides", "763-766)", "in", "exon", "6", "of", "dGK,", "which", "produces", "a", "frame", "shift", "and", "a", "premature", "TGA", "stop", "codon", "at", "nucleotides", "766", "to", "768,", "resulting", "in", "a", "truncated", "255-amino", "acid", "protein.", "Both", "mutations", "were", "absent", "in", "100", "healthy", "individuals.", "CONCLUSIONS:", "Our", "data", "further", "expand", "the", "genetic", "heterogeneity", "in", "patients", "with", "McArdle", "disease;", "confirm", "the", "strong", "relationship", "between", "mitochondrial", "DNA", "depletion", "syndrome,", "liver", "involvement,", "and", "dGK", "mutations;", "and", "suggest", "that", "genetic", "\"double", "trouble\"", "should", "be", "considered", "in", "patients", "with", "unusual", "severe", "phenotypes." ]
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OBJECTIVES: To document 2 apparently incongruous clinical disorders occurring in the same infant: congenital myopathy with myophosphorylase deficiency (McArdle disease) and mitochondrial hepatopathy with liver failure and mitochondrial DNA depletion. METHODS: An infant girl born to consanguineous Moroccan parents had severe congenital hypotonia and hepatomegaly, developed liver failure, and died at 5 months of age. We studied muscle and liver biopsy specimens histochemically and biochemically, and we sequenced the whole coding regions of the deoxyguanosine kinase (dGK) and myophosphorylase (PYGM) genes. RESULTS: Muscle biopsy specimens showed subsarcolemmal glycogen accumulation and negative histochemical reaction for phosphorylase. Liver biopsy specimens showed micronodular cirrhosis and massive mitochondrial proliferation. Biochemical analysis showed phosphorylase deficiency in muscle and cytochrome c oxidase deficiency in liver. We identified a novel homozygous missense G-to-A mutation at codon 456 in exon 11 of PYGM, as well as a homozygous 4-base pair GATT duplication (nucleotides 763-766) in exon 6 of dGK, which produces a frame shift and a premature TGA stop codon at nucleotides 766 to 768, resulting in a truncated 255-amino acid protein. Both mutations were absent in 100 healthy individuals. CONCLUSIONS: Our data further expand the genetic heterogeneity in patients with McArdle disease; confirm the strong relationship between mitochondrial DNA depletion syndrome, liver involvement, and dGK mutations; and suggest that genetic "double trouble" should be considered in patients with unusual severe phenotypes.
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15599941
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16822828
[ "CONTEXT:", "17alpha-Hydroxylase", "deficiency", "is", "a", "rare", "form", "of", "congenital", "adrenal", "hyperplasia", "caused", "by", "CYP17", "gene", "mutations.", "OBJECTIVE:", "Five", "Chinese", "patients", "with", "17alpha-hydroxylase", "deficiency", "were", "genotyped.", "PATIENTS:", "The", "five", "patients", "derived", "from", "four", "families", "living", "in", "Shandong", "Province,", "China.", "The", "diagnosis", "of", "17alpha-hydroxylase", "deficiency", "was", "initially", "established", "through", "HPLC", "serum", "adrenal", "profiles", "in", "Qilu", "Hospital,", "China,", "from", "1983-1993.", "RESULTS:", "Three", "CYP17", "gene", "mutations", "were", "identified", "from", "these", "patients.", "Among", "them,", "V311fs", " ", "and", "Y329fs", " ", "are", "two", "novel", "frame-shifting", "mutations.", "V311fs", " ", "is", "an", "8-bp", "nucleotide", "(TTAAATGG)", "deletion", "in", "exon", "5.", "Y329fs", " ", "is", "a", "deletion-insertion", "combined", "mutation", "(TAC-->AA)", "at", "codon", "329", " ", "in", "exon", "6.", "Two", "homozygotes", "for", "Y329fs", " ", "and", "one", "compound", "heterozygote", "for", "Y329fs", " ", "and", "V311fs", " ", "were", "identified", "from", "three", "different", "families.", "Two", "homozygous", "sisters", "for", "the", "D487_S488_F489", "deletion", "were", "identified.", "CONCLUSION:", "The", "results", "confirmed", "the", "diagnostic", "value", "of", "the", "HPLC", "serum", "adrenal", "profile", "for", "17alpha-hydroxylase", "deficiency.", "The", "D487_S488_F489", "deletion", "had", "been", "identified", "in", "two", "previously", "genotyped", "Chinese", "families.", "In", "our", "present", "study,", "a", "third", "Chinese", "family", "with", "this", "mutation", "was", "identified,", "suggesting", "that", "this", "mutation", "is", "a", "prevalent", "CYP17", "mutation", "in", "the", "Chinese", "population.", "The", "identification", "of", "Y329fs", " ", "mutation", "in", "addition", "to", "three", "previously", "identified", "mutations", "at", "codon", "329", "suggests", "that", "codon", "329", "is", "an", "unstable", "point", "of", "the", "CYP17", "gene.", "The", "mutations", "identified", "from", "our", "five", "patients", "appear", "to", "be", "random,", "but", "the", "recurrence", "of", "the", "Y329fs", " ", "mutation", "may", "be", "attributed", "to", "a", "founder", "effect.", "Our", "studies", "suggest", "that", "17alpha-hydroxylase", "deficiency", "may", "not", "be", "rare", "in", "the", "Chinese", "population." ]
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CONTEXT: 17alpha-Hydroxylase deficiency is a rare form of congenital adrenal hyperplasia caused by CYP17 gene mutations. OBJECTIVE: Five Chinese patients with 17alpha-hydroxylase deficiency were genotyped. PATIENTS: The five patients derived from four families living in Shandong Province, China. The diagnosis of 17alpha-hydroxylase deficiency was initially established through HPLC serum adrenal profiles in Qilu Hospital, China, from 1983-1993. RESULTS: Three CYP17 gene mutations were identified from these patients. Among them, V311fs and Y329fs are two novel frame-shifting mutations. V311fs is an 8-bp nucleotide (TTAAATGG) deletion in exon 5. Y329fs is a deletion-insertion combined mutation (TAC-->AA) at codon 329 in exon 6. Two homozygotes for Y329fs and one compound heterozygote for Y329fs and V311fs were identified from three different families. Two homozygous sisters for the D487_S488_F489 deletion were identified. CONCLUSION: The results confirmed the diagnostic value of the HPLC serum adrenal profile for 17alpha-hydroxylase deficiency. The D487_S488_F489 deletion had been identified in two previously genotyped Chinese families. In our present study, a third Chinese family with this mutation was identified, suggesting that this mutation is a prevalent CYP17 mutation in the Chinese population. The identification of Y329fs mutation in addition to three previously identified mutations at codon 329 suggests that codon 329 is an unstable point of the CYP17 gene. The mutations identified from our five patients appear to be random, but the recurrence of the Y329fs mutation may be attributed to a founder effect. Our studies suggest that 17alpha-hydroxylase deficiency may not be rare in the Chinese population.
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17910065
[ "A", "novel", "missense", "mutation", "in", "the", "paired", "domain", "of", "human", "PAX9", "causes", "oligodontia." ]
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A novel missense mutation in the paired domain of human PAX9 causes oligodontia.
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20634801
[ "8q24", "allelic", "imbalance", "and", "MYC", "gene", "copy", "number", "in", "primary", "prostate", "cancer." ]
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8q24 allelic imbalance and MYC gene copy number in primary prostate cancer.
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19484664
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Asthma is a chronic inflammatory disease of the airways. Several candidate genes have been identified with a potential role in the pathogenesis of asthma, including the angiotensin converting enzyme (ACE) gene. We aimed to investigate the frequency of an ACE gene polymorphism in Turkish asthmatic patients and to determine its impact on clinical parameters and disease severity. Ninety-seven asthmatic patients (M/F 25/72, mean age 39 +/- 13 years) and 96 healthy subjects (M/F 26/70, mean age 38 +/- 12 years) were included. At baseline, all participants completed a questionnaire on demographics, symptoms, triggering factors, severity of asthma, and the presence of atopism. Blood samples were obtained from all patients and genomic DNA was isolated. The frequency of the ACE genotypes (I = insertion and D = deletion) among asthmatics and controls were compared: asthmatics showed a 40.2% prevalence of the DD genotype (n = 39), ID was 45.4% (n = 44), and II was 14.4% (n = 14.4). In the control subjects, the frequency of DD was 18.8% (n = 18), ID was 50% (n = 48) and II was 31.3% (n = 30). The DD ACE genotype was significantly more frequent in asthmatics compared with controls (p < 0.001). Asthmatics with the ID ACE genotype showed a higher frequency of drug allergies, although this was not statistically significant (p = 0.08). Asthmatics with the DD genotype appeared to have a higher incidence of asthmatic episode exacerbations due to viral infections, but again this was not statistically significant (p = 0.08). Patients with mild or moderate-severe asthma had similar frequencies of these mutations. We found a higher frequency of the ACE DD gene mutation in Turkish asthmatic patients compared with non-asthmatics, suggesting that this ACE gene polymorphism may be a risk factor for asthma but does not increase the severity of the disease.
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18036257
[ "Single", "nucleotide", "polymorphisms", "in", "bone", "turnover-related", "genes", "in", "Koreans:", "ethnic", "differences", "in", "linkage", "disequilibrium", "and", "haplotype." ]
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Single nucleotide polymorphisms in bone turnover-related genes in Koreans: ethnic differences in linkage disequilibrium and haplotype.
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17392687
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17910065
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PAX9 and MSX1 are transcription factors that play essential roles in craniofacial and limb development. In humans, mutations in both genes are associated with nonsyndromic and syndromic oligodontia, respectively. We screened one family with nonsyndromic oligodontia for mutations in PAX9 and MSX1. Single stranded conformational polymorphism (SSCP) analysis and sequencing revealed a novel heterozygous C139T transition in PAX9 in the affected members of the family. There were no mutations detected in the entire coding sequence of MSX1. The C139T mutation, predicted to result in the substitution of an arginine by a tryptophan ( R47W ) in the N-terminal subdomain, affected conserved residues in the PAX9 paired domain. To elucidate the pathogenic mechanism producing oligodontia phenotype caused by this mutation, we analyzed the binding of wild-type and mutant PAX9 paired domain protein to double-stranded DNA targets. The R47W mutation dramatically reduced DNA binding suggesting that the mutant protein with consequent haploinsufficiency results in a clinical phenotype.
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15198485
[ "Evaluation", "of", "the", "Lys198Asn", " ", "and", "-134delA", " ", "genetic", "polymorphisms", "of", "the", "endothelin-1", "gene." ]
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Evaluation of the Lys198Asn and -134delA genetic polymorphisms of the endothelin-1 gene.
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21779184
[]
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[ 2, 3 ]
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15814629
[ "PURPOSE:", "In", "the", "present", "study,", "we", "aimed", "to", "substantiate", "the", "putative", "significance", "of", "angiotensin", "I-converting", "enzyme", "(ACE)", "on", "gastric", "cancer", "biology", "by", "investigating", "the", "influence", "of", "its", "gene", "polymorphism", "on", "gastric", "cancer", "progression.", "EXPERIMENTAL", "DESIGN:", "Genomic", "DNA", "was", "purified", "from", "peripheral", "blood", "mononuclear", "cells", "or", "tissue", "specimens.", "Amplified", "ACE", "gene", "fragments", "were", "separated", "on", "agarose", "gels.", "D", "or", "I", "alleles", "were", "identified", "by", "the", "presence", "of", "190-", "or", "490-bp", "fragments,", "respectively.", "Local", "expression", "of", "ACE", "was", "investigated", "by", "immunohistochemistry.", "RESULTS:", "Twenty-four", "of", "113", "(21%)", "gastric", "cancer", "patients", "had", "the", "II,", "57", "(51%)", "the", "ID,", "and", "32", "(28%)", "the", "DD", "genotype.", "The", "distribution", "of", "the", "ACE", "genotypes", "did", "not", "differ", "significantly", "from", "the", "control", "group", "of", "189", "patients", "without", "gastric", "cancer.", "However,", "the", "ACE", "genotypes", "correlated", "with", "the", "number", "of", "lymph", "node", "metastases", "and", "the", "Unio", "Internationale", "Contra", "Cancrum", "(UICC)", "tumor", "stage.", "Patients", "with", "the", "II", "genotype", "had", "a", "highly", "significantly", "smaller", "number", "of", "lymph", "node", "metastases", "(P", "<", "0.001)", "and", "a", "significantly", "lower", "UICC", "tumor", "stage", "(P", "=", "0.01)", "than", "patients", "with", "the", "DD", "genotype.", "No", "correlation", "was", "found", "between", "tumor", "type,", "tumor", "location,", "local", "tumor", "growth,", "distant", "metastases,", "and", "the", "ACE", "genotype.", "The", "expression", "of", "ACE", "in", "gastric", "cancer", "was", "investigated", "by", "immunohistochemistry", "in", "100", "of", "113", "patients.", "ACE", "was", "expressed", "by", "endothelial", "cells", "in", "all", "(100%)", "specimens", "and", "by", "tumor", "cells", "in", "56", "(56%)", "specimens.", "CONCLUSIONS:", "Our", "study", "shows", "that", "ACE", "is", "expressed", "locally", "in", "gastric", "cancer", "and", "that", "the", "gene", "polymorphism", "influences", "metastatic", "behavior." ]
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PURPOSE: In the present study, we aimed to substantiate the putative significance of angiotensin I-converting enzyme (ACE) on gastric cancer biology by investigating the influence of its gene polymorphism on gastric cancer progression. EXPERIMENTAL DESIGN: Genomic DNA was purified from peripheral blood mononuclear cells or tissue specimens. Amplified ACE gene fragments were separated on agarose gels. D or I alleles were identified by the presence of 190- or 490-bp fragments, respectively. Local expression of ACE was investigated by immunohistochemistry. RESULTS: Twenty-four of 113 (21%) gastric cancer patients had the II, 57 (51%) the ID, and 32 (28%) the DD genotype. The distribution of the ACE genotypes did not differ significantly from the control group of 189 patients without gastric cancer. However, the ACE genotypes correlated with the number of lymph node metastases and the Unio Internationale Contra Cancrum (UICC) tumor stage. Patients with the II genotype had a highly significantly smaller number of lymph node metastases (P < 0.001) and a significantly lower UICC tumor stage (P = 0.01) than patients with the DD genotype. No correlation was found between tumor type, tumor location, local tumor growth, distant metastases, and the ACE genotype. The expression of ACE in gastric cancer was investigated by immunohistochemistry in 100 of 113 patients. ACE was expressed by endothelial cells in all (100%) specimens and by tumor cells in 56 (56%) specimens. CONCLUSIONS: Our study shows that ACE is expressed locally in gastric cancer and that the gene polymorphism influences metastatic behavior.
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17426470
[ "Desmoid", "tumors", "may", "occur", "sporadically", "or", "as", "part", "of", "the", "extraintestinal", "manifestations", "of", "familial", "adenomatous", "polyposis.", "Different", "phenotypes", "have", "been", "described", "and", "some", "genotype-phenotype", "correlations", "have", "been", "raised,", "associated", "with", "different", "sites", "of", "germline", "mutations", "in", "the", "adenomatous", "polyposis", "coli", "(APC)", "gene.", "We", "report", "on", "a", "42-year-old", "woman", "ascertained", "for", "a", "large", "desmoid", "tumor", "of", "the", "anterior", "chest", "wall", "with", "pleural", "involvement,", "which", "persistently", "recurred", "despite", "a", "decade", "of", "treatment", "including", "hormone", "therapy,", "chemotherapy,", "and", "surgery.", "Spontaneous", "disappearance", "of", "the", "tumor", "was", "later", "noted", "after", "1", "year", "without", "any", "treatment", "and", "confirmed", "after", "4", "years", "of", "regular", "follow-up.", "Repeated", "colonoscopies", "were", "normal", "in", "the", "proband", "and", "DNA", "sequencing", "showed", "a", "frameshift", "mutation", "due", "to", "a", "single", "adenosine", "deletion", "at", "position", "5772", "(codon", "1924).", "This", "mutation,", "located", "in", "the", "exon", "15", "at", "the", "3'", "end", "of", "the", "APC", "gene,", "leads", "to", "an", "unusual", "and", "late", "onset", "phenotype.", "The", "pedigree", "revealed", "other", "isolated", "or", "familial", "adenomatous", "polyposis-associated", "cases", "of", "desmoid", "tumors.", "This", "family", "report", "shows", "that", "a", "molecular", "analysis", "of", "the", "APC", "gene", "should", "be", "performed", "in", "familial", "desmoid", "tumors", "for", "accurate", "genetic", "counseling", "and", "follow-up." ]
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Desmoid tumors may occur sporadically or as part of the extraintestinal manifestations of familial adenomatous polyposis. Different phenotypes have been described and some genotype-phenotype correlations have been raised, associated with different sites of germline mutations in the adenomatous polyposis coli (APC) gene. We report on a 42-year-old woman ascertained for a large desmoid tumor of the anterior chest wall with pleural involvement, which persistently recurred despite a decade of treatment including hormone therapy, chemotherapy, and surgery. Spontaneous disappearance of the tumor was later noted after 1 year without any treatment and confirmed after 4 years of regular follow-up. Repeated colonoscopies were normal in the proband and DNA sequencing showed a frameshift mutation due to a single adenosine deletion at position 5772 (codon 1924). This mutation, located in the exon 15 at the 3' end of the APC gene, leads to an unusual and late onset phenotype. The pedigree revealed other isolated or familial adenomatous polyposis-associated cases of desmoid tumors. This family report shows that a molecular analysis of the APC gene should be performed in familial desmoid tumors for accurate genetic counseling and follow-up.
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[ "INTRODUCTION:", "IL-17F", "is", "a", "novel", "inflammatory", "cytokine", "and", "plays", "an", "important", "role", "in", "some", "autoimmune", "diseases.", "We", "investigated", "the", "association", "between", "chronic", "ITP", "and", "the", "frequency", "of", "the", "single-nucleotide", "polymorphism", "rs763780", " ", "(", "7488T/C", "),", "which", "causes", "a", "His-to-Arg", "substitution", "at", "amino", "acid", "161.", "PATIENTS", "AND", "METHODS:", "We", "examined", "102", "patients", "(men/women,", "40/62;", "median", "age,", "42)", "diagnosed", "with", "chronic", "ITP", "and", "188", "healthy", "controls", "(men/women,", "78/110;", "median", "age,", "38).", "Genotyping", "was", "determined", "by", "the", "polymerase", "chain", "reaction-restriction", "fragment", "length", "polymorphism", "(PCR-RFLP)", "technique.", "RESULTS:", "Compared", "with", "the", "control", "group,", "patients", "with", "chronic", "ITP", "had", "a", "significantly", "lower", "frequency", "of", "the", "IL-17F", "7488CC", "genotype", "(0%", "vs.", "4.8%,", "P<0.05).", "The", "number", "of", "IL-17F", "7488C", "alleles", "among", "the", "patients", "with", "chronic", "ITP", "was", "also", "significantly", "lower", "than", "in", "the", "control", "group", "(8.7%", "vs.", "15.2%", "OR=0.48,", "95%CI=0.27-0.84,", "P=0.016).", "Furthermore,", "patients", "with", "the", "IL-17F", "7488TT", "genotype", "showed", "a", "severe", "thrombocytopenic", "state", "(platelet", "count<10", "10(9)", "/L)", "at", "diagnosis", "than", "those", "with", "the", "IL-17F", "7488TC", "genotype", "(20.9%", "vs.", "0%,", "P=0.04).", "CONCLUSION:", "These", "findings", "suggest", "that", "the", "IL-17F", "7488", "T", "allele", "is", "significantly", "associated", "with", "the", "development", "of", "chronic", "ITP,", "suggesting", "a", "role", "for", "IL-17F", "in", "the", "pathogenesis", "of", "chronic", "ITP." ]
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INTRODUCTION: IL-17F is a novel inflammatory cytokine and plays an important role in some autoimmune diseases. We investigated the association between chronic ITP and the frequency of the single-nucleotide polymorphism rs763780 ( 7488T/C ), which causes a His-to-Arg substitution at amino acid 161. PATIENTS AND METHODS: We examined 102 patients (men/women, 40/62; median age, 42) diagnosed with chronic ITP and 188 healthy controls (men/women, 78/110; median age, 38). Genotyping was determined by the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) technique. RESULTS: Compared with the control group, patients with chronic ITP had a significantly lower frequency of the IL-17F 7488CC genotype (0% vs. 4.8%, P<0.05). The number of IL-17F 7488C alleles among the patients with chronic ITP was also significantly lower than in the control group (8.7% vs. 15.2% OR=0.48, 95%CI=0.27-0.84, P=0.016). Furthermore, patients with the IL-17F 7488TT genotype showed a severe thrombocytopenic state (platelet count<10 10(9) /L) at diagnosis than those with the IL-17F 7488TC genotype (20.9% vs. 0%, P=0.04). CONCLUSION: These findings suggest that the IL-17F 7488 T allele is significantly associated with the development of chronic ITP, suggesting a role for IL-17F in the pathogenesis of chronic ITP.
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