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Data for assessment of sediment, soil, and water quality at Ashfield flats reserve, Western Australia
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Sediment and water samples were collected using transects and grids within sampling strata, in 2019, 2020, and 2021 from a riparian reserve adjoining the Swan River estuary in Western Australia. Different sampling designs were used each year, with transects and/or grids designed to assess changes in sediment and water quality across assumed environmental gradients such as salinity or distance from possible contaminant sources. Sediments were from 0-10cm; pH and electrical conductivity were measured on suspensions, 32 elements measured by ICP-OES on HNO3/HCl digests, and microplastics counted microscopically after Fenton digestion and density separation. Surface water was from wetland ponds and stormwater drains, with pH, EC measured in-situ. Filtered acidified water subsamples used to measure nitrate + nitrite and dissolved phosphate spectrophotometrically and 26 elements using ICP-OES. Reported data include metadata and are for 231 sediment/soil samples and 172 water samples, including sampling strata categories and UTM and Longitude-Latitude coordinates. Elemental concentrations have been censored based on blank subtraction and calculated lower detection limits, with censored data presented with missing value codes.
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Echinoderms from Santa Catarina, southern Brazil: an update on biodiversity and distribution
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We provide an update, based on literature records, on biodiversity and distribution of echinoderms along the state of Santa Catarina, Brazil. Sixty-one echinoderms taxa are reported, in 36 families. We present information on habitat distribution, taxonomy and possible threats to these species. The highest number of echinoderm records was between 25°19'S and 28°11'S latitudes, and sites of the Continental Shelf and the Reserva Biológica Marinha of Arvoredo area had the most species records (30 and 26 species, respectively). In addition, Santa Catarina is the southernmost record, in the Atlantic Ocean, for 40 echinoderm species; of these, 10 are on the regional list of endangered species. Eight species are endemic to Brazil and one ophiuroid species was reported herein for the first time at Santa Catarina: Ophiacantha pentacrinus Lütken, 1869.(AU)
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Zinc Deficiency in Soils of Ukraine: Possible Causes and Regulatory Mechanisms
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In the context of global pollution, zinc is generally considered a heavy metal that can harm human health and other living organisms. However, it is known that zinc is a necessary micronutrient that is involved in many important metabolic processes. In a coronavirus pandemic, the positive role of zinc in controlling COVID is important. Zinc is one of the priority micronutrients that are deficient for most regions of the planet and its deficiency can lead to serious diseases and Ukraine is no exception. It is established that zinc is in short supply for most regions of Ukraine and products that are part of the diet of Ukrainians do not contain enough of it and do not provide the daily physiological needs of people. One of the reasons for such an unsatisfactory situation may be the insufficient amount of zinc in the soils of Ukraine, or the low level of its mobility. It is shown that Zn was characterized by a low level of transition from soil to crop production - the average transition coefficient ranged from 0.10. The reason for this phenomenon could be the low content of zinc in the soils of Ukraine. The grouping of soils of Ukraine by the potential ability to provide plants with a sufficient amount of Zn, taking into account the physiological needs of man was carried out. Using Zn transition coefficients in the soil-plant system and potential mobility of the element in soils of different soil-climatic zones of Ukraine, the division into groups was made: very low potential <= 21 mg Zn kg(-1), low potential from 22 to 48 mg Zn kg(-1), average potential from 49 to 77 mg Zn kg(-1), high potential >= 78 mg Zn kg(-1). According to the division, an assessment was made and it was found that the population of most of Ukraine cannot get enough zinc naturally through food of plant and, accordingly, animal origin. It is shown that one of the effective mechanisms of regulation of zinc inflow into the soil and increase of its mobility is the system of fertilization of agricultural plants. The analysis of traditional fertilizers of Ukraine and phosphorites from deposits of Ukraine is presented. It was found that the highest content of Zn was in phosphorites - it ranged from 7.8 to 14.2 mg kg(-1). It is shown that, depending on the peculiarities of the technology of growing crops, the soil can be annually introduced from 200 to 20.000 and more mg kg(-1) of Zn. It is proved that it is possible to increase the content of zinc in soils by applying agrochemicals, first of all, phosphorus fertilizers, and to increase its mobility and transition to plants - by introduction of technological operations of cultivation of crops. especially in conditions of low level of natural mobility Zn (south and east of Ukraine).
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Personality differences in the selection of dynamic refugia have demographic consequences for a winter-adapted bird.
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For overwintering species, individuals' ability to find refugia from inclement weather and predators probably confers strong fitness benefits. How animals use their environment can be mediated by their personality (e.g. risk-taking), but does personality mediate how overwintering species select refugia? Snow cover is a dynamic winter characteristic that can influence crypsis or provide below-the-snow refugia. We explored how wintering ruffed grouse (Bonasa umbellus) selected snow roosting sites, a behaviour that reduces stress and cold exposure. We linked selection for approximately 700 roosts with survival of 42 grouse, and showed that grouse generally selected deeper snow and warmer areas. Grouse found in shallow snow were less likely to survive winter. However, individuals that selected deep snow improved their survival, suggesting that demographic consequences of selecting winter refugia are mediated by differences in personality. Our study provides a crucial, and seldom addressed, link between personality in resource selection and resulting demographic consequences.
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Data integration enables global biodiversity synthesis
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The accessibility of global biodiversity information has surged in the past two decades, notably through widespread funding initiatives for museum specimen digitization and emergence of large-scale public participation in community science. Effective use of these data requires the integration of disconnected datasets, but the scientific impacts of consolidated biodiversity data networks have not yet been quantified. To determine whether data integration enables novel research, we carried out a quantitative text analysis and bibliographic synthesis of >4,000 studies published from 2003 to 2019 that use data mediated by the world’s largest biodiversity data network, the Global Biodiversity Information Facility (GBIF). Data available through GBIF increased 12-fold since 2007, a trend matched by global data use with roughly two publications using GBIF-mediated data per day in 2019. Data-use patterns were diverse by authorship, geographic extent, taxonomic group, and dataset type. Despite facilitating global authorship, legacies of colonial science remain. Studies involving species distribution modeling were most prevalent (31% of literature surveyed) but recently shifted in focus from theory to application. Topic prevalence was stable across the 17-y period for some research areas (e.g., macroecology), yet other topics proportionately declined (e.g., taxonomy) or increased (e.g., species interactions, disease). Although centered on biological subfields, GBIF-enabled research extends surprisingly across all major scientific disciplines. Biodiversity data mobilization through global data aggregation has enabled basic and applied research use at temporal, spatial, and taxonomic scales otherwise not possible, launching biodiversity sciences into a new era.
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Using a simple apparatus to measure direct and diffuse photosynthetically active radiation at remote locations.
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Plant canopy interception of photosynthetically active radiation (PAR) drives carbon dioxide (CO2), water and energy cycling in the soil-plant-atmosphere system. Quantifying intercepted PAR requires accurate measurements of total incident PAR above canopies and direct beam and diffuse PAR components. While some regional data sets include these data, e.g. from Atmospheric Radiation Measurement (ARM) Program sites, they are not often applicable to local research sites because of the variable nature (spatial and temporal) of environmental variables that influence incoming PAR. Currently available instrumentation that measures diffuse and direct beam radiation separately can be cost prohibitive and require frequent adjustments. Alternatively, generalized empirical relationships that relate atmospheric variables and radiation components can be used but require assumptions that increase the potential for error. Our goal here was to construct and test a cheaper, highly portable instrument alternative that could be used at remote field sites to measure total, diffuse and direct beam PAR for extended time periods without supervision. The apparatus tested here uses a fabricated, solar powered rotating shadowband and other commercially available parts to collect continuous hourly PAR data. Measurements of total incident PAR had nearly a one-to-one relationship with total incident radiation measurements taken at the same research site by an unobstructed point quantum sensor. Additionally, measurements of diffuse PAR compared favorably with modeled estimates from previously published data, but displayed significant differences that were attributed to the important influence of rapidly changing local environmental conditions. The cost of the system is about 50% less than comparable commercially available systems that require periodic, but not continual adjustments. Overall, the data produced using this apparatus indicates that this instrumentation has the potential to support ecological research via a relatively inexpensive method to collect continuous measurements of total, direct beam and diffuse PAR in remote locations.
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Fish disease dynamics in changing rivers: Salmonid Ceratomyxosis in the Klamath River
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Abstract The myxozoan parasite Ceratomyxa shasta has been identified as the main contributor of mortality in salmon in the Klamath River, California. The life cycle of the parasite is complex, involving a polychaete and a salmonid host. Infection dynamics are greatly influenced by environmental factors, such as temperature and water velocity. If we are to control the disease it is important to predict the impact of environmental scenarios on spore concentration and infection prevalence. Here, we introduce a model based on partial differential equations to study the spore concentration in the river and the infection prevalence of returning salmon. The analysis of the model shows that for current climate conditions, additional dam release can reduce the actinospore concentration up to 48% and the prevalence up to 40% thus providing a potential disease management option. However, the infection risk is likely to increase for future climate conditions by 10–54% and this will lead to an infection level comparable to that of a recent high-disease year. Our simulations show that dam removal cannot be assumed to mitigate the effect of climate change or to have influence on infection prevalence. We show that our detailed model system can be reduced to a simpler exponential dose-response function, which predicts infection levels based on transmission rates, travel time and mean spore concentration, quantities that can be measured in-situ or given empirically. The dose-response function may therefore be a useful tool in disease management.
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Quantifying climate change effects on future forest biomass availability using yield tables improved by mechanistic scaling
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Forests and wood products play a major role in climate change mitigation strategies and the transition from a fossil-based economy to a circular bioeconomy. Accurate estimates of future forest productivity are crucial to predict the carbon sequestration and wood provision potential of forests. Since long, forest managers have used empirical yield tables as a cost-effective and reliable way to predict forest growth. However, recent climate change-induced growth shifts raised doubts about the long-term validity of these yield tables. In this study, we propose a methodology to improve available yield tables of 11 tree species in the Netherlands and Flanders, Belgium. The methodology uses scaling functions derived from climate-sensitive process-based modelling (PBM) that reflect state-of-the-art projections of future growth trends. Combining PBM and stand information from the empirical yield tables for the region of Flanders, we found that for the period 1987-2016 stand productivity has on average increased by 13% compared to 1961-1990. Furthermore, simulations indicate that this positive growth trend is most likely to persist in the coming decades, for all considered species, climate or site conditions. Nonetheless, results showed that local site variability is equally important to consider as the in- or exclusion of the CO2 fertilization effect or different climate projections, when assessing the magnitude of forests' response to climate change. Our projections suggest that incorporating these climate change-related productivity changes lead to a 7% increase in standing stock and a 22% increase in sustainably potentially harvestable woody biomass by 2050. The proposed methodology and resulting estimates of climate-sensitive projections of future woody biomass stocks will facilitate the further incorporation of forests and their products in global and regional strategies for the transition to a climate-smart circular bioeconomy.
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Learning about Pesticide Use Adapted from Ethnoscience as a Contribution to Green and Sustainable Chemistry Education
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This study shows how students can learn about green and sustainable chemistry by using the knowledge perspective of a local indigenous culture as a starting point. This learning approach encourages students to learn chemistry by connecting culture with learning about green chemistry. The cultural context selects the use of a phytochemical agent (d-limonene) from a local plant (Citrus grandis), which is a traditional botanical pesticide that is used by the Baduy tribe in Western Java, Indonesia. A simple low-cost extraction method that uses a kitchen microwave was chosen to introduce modern green extraction methods to learners. This facilitates the students' ability to evaluate the 'greenness';of this method, as compared to more conventional extraction methods, such as Soxhlet and steam distillation. The learning activities were conducted during the COVID-19 pandemic with the help of an online learning management system (SPADA) and Google Meet. The students' feedback and selected results are discussed below.
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Biological risk and pollution history of polycyclic aromatic hydrocarbons (PAHs) in Nansha mangrove, South China
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Chinese government has taken various measures to alleviate pollution caused by polycyclic aromatic hydrocarbons (PAHs) in the region of Pearl River Delta since the economic reform in 1978, but the effectiveness of these measures remains largely unknown. This study aimed to elucidate the biological risk and pollution history of PAHs by measuring the concentrations of 28 PAHs in the surface and core sediments, respectively, in Nansha mangrove. Results found that the biological risk of PAHs was low without obvious spatial variation. The PAH concentration along the depth gradient indicated that PAH pollution was stabilized since the early 1990s while the source of PAHs has gradually changed from combustion of coal to petroleum products. This implied that the mitigation measures taken by the Chinese government were effective. Compared to marine bottom sediment, we propose that using mangrove sediment can provide a more accurate and precise estimate of pollution history of PAHs.
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Transcriptome analysis and association mapping revealed the genetic regulatory network response to cadmium stress in Populus tomentosa
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Long non-coding RNAs (lncRNAs) play essential roles in plant abiotic stress responses, however, the lncRNA-mediated genetic networks response to cadmium (Cd) treatment remain elusive in trees, the promising phytoremediation candidates for Cd contamination. Here, we identified 172 Cd-responsive lncRNAs and 295 differentially expressed target genes in the leaves of Populus tomentosa under Cd treatment. Functional annotation revealed that these lncRNAs involved in various processes, including photosynthesis, hormone regulation, and phenylalanine metabolism. Association studies identified 78 significant associations, representing 14 Cd-responsive lncRNAs and 28 target genes for photosynthetic and leaf physiological traits. Epistasis uncovered 83 pairwise interactions among these traits, unveiling Cd-responsive lncRNA-mediated genetic networks for photosynthesis and leaf physiology in P. tomentosa. We then focused on the roles of two Cd-responsive lncRNA-gene pairs, MSTRG.22608.1-PtoMYB73 and MSTRG.5634.1-PtoMYB27, in Cd tolerance of Populus, and detected insertions/deletions within lncRNAs as polymorphisms driving target gene expression. LncRNAs genotype analysis and heterologous overexpressing PtoMYB73 and PtoMYB27 in Arabidopsis indicated their positive effects on enhancing Cd tolerance, photosynthetic rate, and leaf growth, and the potential interaction mechanisms of PtoMYB73 with abiotic stresses. Our study provides the genetic basis for Populus response to Cd treatment, facilitating genetic improvement of enhancing Cd tolerance in trees.
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Determination of Cyanotoxins and Prymnesins in Water, Fish Tissue, and Other Matrices: A Review
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Harmful algal blooms (HABs) and their toxins are a significant and continuing threat to aquatic life in freshwater, estuarine, and coastal water ecosystems. Scientific understanding of the impacts of HABs on aquatic ecosystems has been hampered, in part, by limitations in the methodologies to measure cyanotoxins in complex matrices. This literature review discusses the methodologies currently used to measure the most commonly found freshwater cyanotoxins and prymnesins in various matrices and to assess their advantages and limitations. Identifying and quantifying cyanotoxins in surface waters, fish tissue, organs, and other matrices are crucial for risk assessment and for ensuring quality of food and water for consumption and recreational uses. This paper also summarizes currently available tissue extraction, preparation, and detection methods mentioned in previous studies that have quantified toxins in complex matrices. The structural diversity and complexity of many cyanobacterial and algal metabolites further impede accurate quantitation and structural confirmation for various cyanotoxins. Liquid chromatography-triple quadrupole mass spectrometer (LC-MS/MS) to enhance the sensitivity and selectivity of toxin analysis has become an essential tool for cyanotoxin detection and can potentially be used for the concurrent analysis of multiple toxins.
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A barcoding pipeline for mosquito surveillance in Nepal, a biodiverse dengue-endemic country
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BACKGROUND: Vector-borne diseases are on the rise on a global scale, which is anticipated to further accelerate because of anthropogenic climate change. Resource-limited regions are especially hard hit by this increment with the currently implemented surveillance programs being inadequate for the observed expansion of potential vector species. Cost-effective methods that can be easily implemented in resource-limited settings, e.g. under field conditions, are thus urgently needed to function as an early warning system for vector-borne disease epidemics. Our aim was to enhance entomological capacity in Nepal, a country with endemicity of numerous vector-borne diseases and with frequent outbreaks of dengue fever. METHODS: We used a field barcoding pipeline based on DNA nanopore sequencing (Oxford Nanopore Technologies) and verified its use for different mosquito life stages and storage methods. We furthermore hosted an online workshop to facilitate knowledge transfer to Nepalese scientific experts from different disciplines. RESULTS: The use of the barcoding pipeline could be verified for adult mosquitos and eggs, as well as for homogenized samples, dried specimens, samples that were stored in ethanol and frozen tissue. The transfer of knowledge was successful, as reflected by feedback from the participants and their wish to implement the method. CONCLUSIONS: Cost effective strategies are urgently needed to assess the likelihood of disease outbreaks. We were able to show that field sequencing provides a solution that is cost-effective, undemanding in its implementation and easy to learn. The knowledge transfer to Nepalese scientific experts from different disciplines provides an opportunity for sustainable implementation of low-cost portable sequencing solutions in Nepal. GRAPHICAL ABSTRACT: [Image: see text] SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13071-022-05255-1.
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Enhanced Uptake of Arsenic Induces Increased Toxicity with Cadmium at Non-Toxic Concentrations on Caenorhabditis elegans
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Cadmium (Cd) and arsenic (As) are widely distributed pollutants that co-exist in the environment; however, their joint toxicity on living organisms is still largely unknown. In this study, we explored the joint toxicity of concurrent exposure to Cd and different As species at low concentrations on Caenorhabditis elegans (C. elegans) in comparison to single exposures. Endpoints such as germ cell apoptosis, the number of oocytes, brood size, and the life span were employed to evaluate the combined effects of Cd and As on exposed C. elegans from L3 or L4 stages. Our results showed that concurrent exposure to non-toxic concentrations of Cd and As caused the synergy of reproductive and developmental toxicity. The presence of Cd promoted the accumulation of As in both germline and intestine detected by laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS). Although a conversion of As(III) to As(V) was detected as dependent on pH according to the microenvironment of the intestine in the worm, there was no significant difference of toxicity in C. elegans concurrently exposed to Cd and different As species. Using loss-of-function mutant strains, As was deemed responsible for the enhanced joint toxicity, and in which gcs-1 played a key protective role. These data help to better evaluate the comprehensive adverse effects of concurrent exposure of heavy metals at low concentrations on living organisms in the environment.
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Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR)
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Quantification of feeding rates and selectivity of zooplankton is vital for understanding the mechanisms structuring marine ecosystems. However, methodological limitations have made many of these studies difficult. Recently, molecular based methods have demonstrated that DNA from prey species can be used to identify zooplankton gut contents, and further, quantitative gut content estimates by quantitative PCR (qPCR) assays targeted to the 18S rRNA gene have been used to estimate feeding rates in appendicularians and copepods. However, while standard single primer based qPCR assays were quantitative for the filter feeding appendicularian Oikopleura dioica, feeding rates were consistently underestimated in the copepod Calanus finmarchicus. In this study, we test the hypothesis that prey DNA is rapidly digested after ingestion by copepods and describe a qPCR-based assay, differential length amplification qPCR (dla-qPCR), to account for DNA digestion. The assay utilizes multiple primer sets that amplify different sized fragments of the prey 18S rRNA gene and, based on the differential amplification of these fragments, the degree of digestion is estimated and corrected for. Application of this approach to C. finmarchicus fed Rhodomonas marina significantly improved quantitative feeding estimates compared to standard qPCR. The development of dla-qPCR represents a significant advancement towards a quantitative method for assessing in situ copepod feeding rates without involving cultivation-based manipulation.
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Old growth forests and large old trees as critical organisms connecting ecosystems and human health. A review
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Old forests containing ancient trees are essential ecosystems for life on earth. Mechanisms that happen both deep in the root systems and in the highest canopies ensure the viability of our planet. Old forests fix large quantities of atmospheric CO(2), produce oxygen, create micro-climates and irreplaceable habitats, in sharp contrast to young forests and monoculture forests. The current intense logging activities induce rapid, adverse effects on our ecosystems and climate. Here we review large old trees with a focus on ecosystem preservation, climate issues, and therapeutic potential. We found that old forests continue to sequester carbon and fix nitrogen. Old trees control below-ground conditions that are essential for tree regeneration. Old forests create micro-climates that slow global warming and are irreplaceable habitats for many endangered species. Old trees produce phytochemicals with many biomedical properties. Old trees also host particular fungi with untapped medicinal potential, including the Agarikon, Fomitopsis officinalis, which is currently being tested against the coronavirus disease 2019 (COVID-19). Large old trees are an important part of our combined cultural heritage, providing people with aesthetic, symbolic, religious, and historical cues. Bringing their numerous environmental, oceanic, ecological, therapeutic, and socio-cultural benefits to the fore, and learning to appreciate old trees in a holistic manner could contribute to halting the worldwide decline of old-growth forests.
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Salinity Is a Key Determinant for the Microeukaryotic Community in Lake Ecosystems of the Inner Mongolia Plateau, China
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The arid and semiarid areas experienced remarkable lake shrinkage during recent decades due to intensive human activities and climate change, which would result in unprecedented changes of microeukaryotic communities. However, little is known about how climate change affects the structure and ecological mechanisms of microeukaryotic communities in this area. Here, we used an 18S rRNA gene-based high-throughput sequencing approach to explore the structure, interspecies interaction, and assembly processes of the microeukaryotic community in lake ecosystems of the Inner Mongolia Plateau. As a direct result of climate change, salinity has become the key determinant of the lacustrine microeukaryotic community in this region. The microeukaryotic community in this ecosystem can be divided into three groups: salt (Lake Daihai), brackish (Lake Dalinuoer) and freshwater lakes. Co-occurrence network analysis revealed that salinity shapes the interspecies interactions of the microeukaryotic community. This causes interspecies interactions to change from antagonistic to cooperative with an increase in salinity. Phylogenetic-based ß-nearest taxon distance analyses revealed that stochastic processes mainly dominated the microeukaryotic community assembly in lake ecosystems of the Inner Mongolia Plateau, and salinity stress drove the assembly processes of the microeukaryotic community from stochastic to deterministic. Overall, these findings expand the current understanding of interspecies interactions and assembly processes of microeukaryotic communities during climate change in lake ecosystems of the Inner Mongolia Plateau.
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New Evidence of Ancient Mitochondrial DNA of the Southern Andes (Calchaquí Valleys, Northwest Argentina, 3,600-1,900 Years before Present).
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Genetic studies on pre-Hispanic populations of the Southern Andes have been increasing steadily in the last decade. Nevertheless, ancient DNA characterization of Formative Period archaeological human remains is particularly scant, especially for Northwest Argentina. To expand current information on genetic characterization of the first agricultural communities of the southern Calchaquí Valleys, we present and discuss the first mitochondrial ancient DNA information obtained on samples dated to ca. 3,600-1,900 years before present from the Cajón Valley, Catamarca Province. Reproducible mtDNA hypervariable region 1 (HVR-1) sequences were obtained in seven individuals. Mitochondrial HVR-1 haplotypes were assigned to three of the four founding haplogroups, D1 (57.1%), C1 (28.5%), and B2 (14.2%), with absence of A2. Our results show that the Cajón Valley sample, with predominance of D1 and C1, differs from that commonly observed in ancient and modern Andean populations, which usually show a high prevalence of haplogroup B2. The fact that the Cajón Valley and Pampa Grande (Salta Province, Argentina) share a prevalence of haplogroup D1 could provide additional evidence to support possible genetic affinities between the valleys and the eastern sub-Andean region during the Formative Period in Northwest Argentina, expanding the archaeological evidence of contact between both populations. Future complete mitogenomic analysis will provide substantial information to formulate new hypotheses about the origins and phylogenetic relationships between the individuals of the Cajón Valley and other groups from the Andes, Gran Chaco, and the Amazon.
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Assessing the water quality impacts of two Category-5 hurricanes on St. Thomas, Virgin Islands.
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Managing waterborne and water-related diseases is one of the most critical factors in the aftermath of hurricane-induced natural disasters. The goal of the study was to identify water-quality impairments in order to set the priorities for post-hurricane relief and to guide future decisions on disaster preparation and relief administration. Field investigations were carried out on St. Thomas, U.S. Virgin Islands as soon as the disaster area became accessible after the back-to-back hurricane strikes by Irma and Maria in 2017. Water samples were collected from individual household rain cisterns, the coastal ocean, and street-surface runoffs for microbial concentration. The microbial community structure and the occurrence of potential human pathogens were investigated in samples using next generation sequencing. Loop mediated isothermal amplification was employed to detect fecal indicator bacteria, Enterococcus faecalis. The results showed both fecal indicator bacteria and Legionella genetic markers were prevalent but were low in concentration in the water samples. Among the 22 cistern samples, 86% were positive for Legionella and 82% for Escherichia-Shigella. Enterococcus faecalis was detected in over 68% of the rain cisterns and in 60% of the coastal waters (n = 20). Microbial community composition in coastal water samples was significantly different from cistern water and runoff water. Although identification at bacterial genus level is not direct evidence of human pathogens, our results suggest cistern water quality needs more organized attention for protection of human health, and that preparation and prevention measures should be taken before natural disasters strike.
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Differential impact of Bt-transgenic rice plantings on bacterial community in three niches over consecutive years.
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Transgenic-Bacillus thuringiensis (Bt) crops express insecticidal proteins, which can accumulate in plants and soil where they may influence microbial populations. The impact of Bt crops on bacterial communities has only been assessed under short-term, and results have been contradictory. Here, we analyzed the bacterial communities in three niches, rhizosphere soil (RS), root endosphere (RE) and leaf endosphere (LE), of three Bt rice and their non-Bt parental lines for three consecutive years by high-throughput sequencing. In principal coordinate analysis (PCoA) and PERMANOVA (Adonis) analysis, operational taxonomic units (OTUs) were clustered primarily by niche type and differed significantly in the RE and LE but not in the RS between each of three Bt lines compared with the non-Bt rice line, and not in each respective niche among the three Bt rice lines. The bacterial communities in the RS of different rice lines over the 3 years were clustered mainly by year rather than by lines. The differential bacterial taxa among the lines did not overlap between years, presumably because Cry proteins are rapidly degraded in the soil. A network analysis of RS bacterial communities showed that the network complexity and density for the three Bt rice lines did not decrease compared with those for the non-Bt line. In conclusion, our results demonstrated that bacterial communities differed significantly in RE and LE between Bt and non-Bt rice lines, but the differences were mild and transient, and had no adverse impact on RS over the 3 years. This study provides favorable evidence in support of the commercialization of Bt rice.
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Vulnerability to Nitrate Occurrence in the Spring Waters of the Sila Massif (Calabria, Southern Italy)
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Knowledge of spring waters' chemical composition is paramount for both their use and their conservation. Vast surveys at the basin scale are required to define the nature and the location of the springs and to identify the hydrochemical facies of their aquifers. The present study aims to evaluate the hydrochemical facies and the vulnerability to nitrates of 59 springs falling in the Sila Massif in Calabria (southern Italy) and to identify their vulnerability through the analysis of physicochemical parameters and the use of the Langelier-Ludwig diagram. A spatial analysis was performed by the spline method. The results identified a mean value of 4.39 mg NO3-/L and a maximum value of 24 mg NO3-/L for nitrate pollution in the study area. Statistical analysis results showed that the increase in electrical conductivity follows the increase in alkalinity values, a correlation especially evident in the bicarbonate Ca-Mg waters and linked to the possibility of higher nitrate concentrations in springs. These analyses also showed that nitrate vulnerability is dependent on the geological setting of springs. Indeed, the Sila igneous-metamorphic batholith, often strongly affected by weathering processes, contributes to not buffering the nitrate impacts on aquifers. Conversely, anthropogenic activities, particularly fertilization practices, are key factors in groundwater vulnerability.
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Histopathological alterations in gills, liver, kidney and muscles of Ictalurus punctatus collected from pollutes areas of River.
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Untreated sewage and industrial wastes from Faisalabad city are disposed to River Chenab through Chakbandi Main Drain (CMD). The present project is planned to investigate the effects of this freshwater pollution on the body of fish Ictalurus punctatus. The specimens of this fish species were collected upstream and downstream of the entrance of CMD into River Chenab. Fish gills, liver, kidney and muscles from dorsolateral regions of fish were subjected to histopathology. Farmed fish and fish from upstream areas were used as control. Fish collected from polluted experimental sites showed significant damage in selected organs. Gill tissues showed an abnormality in the form of an uplifting of the primary epithelium, fusion, vacuolation, hypertrophy, and necrosis. While liver tissues subjected to hepatocytes degeneration, necrosis, mitochondrial granular hepatocyte, and sinusoids dilation. Kidney tissues indicated increased bowmen space and constricted glomerulus and degenerated nephrons. Edema, necrosis, and atrophy were observed in muscle tissues of fish from polluted areas. Fish from the upstream area showed fused gill lamellae, inflammatory cell infiltration, hypertrophy and vacuolation in hepatocytes. Kidney tissues indicated the presence of nuclear tubular cells, destructive renal tubules, hemorrhage, and necrosis at tubular epithelium. Intra myofibril spaces were also observed in muscles. Specimens of control fish indicated no variation in gills, liver, kidney, and muscles. The present study revealed a strong correlation between the degree of tissue damage and environmental contamination. Present findings also compel global warnings to protect our water bodies and fish to rescue the human population.
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Biofortification of Cereals and Pulses Using New Breeding Techniques: Current and Future Perspectives
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Cereals and pulses are consumed as a staple food in low-income countries for the fulfillment of daily dietary requirements and as a source of micronutrients. However, they are failing to offer balanced nutrition due to deficiencies of some essential compounds, macronutrients, and micronutrients, i.e., cereals are deficient in iron, zinc, some essential amino acids, and quality proteins. Meanwhile, the pulses are rich in anti-nutrient compounds that restrict the bioavailability of micronutrients. As a result, the population is suffering from malnutrition and resultantly different diseases, i.e., anemia, beriberi, pellagra, night blindness, rickets, and scurvy are common in the society. These facts highlight the need for the biofortification of cereals and pulses for the provision of balanced diets to masses and reduction of malnutrition. Biofortification of crops may be achieved through conventional approaches or new breeding techniques (NBTs). Conventional approaches for biofortification cover mineral fertilization through foliar or soil application, microbe-mediated enhanced uptake of nutrients, and conventional crossing of plants to obtain the desired combination of genes for balanced nutrient uptake and bioavailability. Whereas, NBTs rely on gene silencing, gene editing, overexpression, and gene transfer from other species for the acquisition of balanced nutritional profiles in mutant plants. Thus, we have highlighted the significance of conventional and NBTs for the biofortification of cereals and pulses. Current and future perspectives and opportunities are also discussed. Further, the regulatory aspects of newly developed biofortified transgenic and/or non-transgenic crop varieties via NBTs are also presented.
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Simulating an invasion: unsealed water storage (rainwater tanks) and urban block design facilitate the spread of the dengue fever mosquito, Aedes aegypti, in Brisbane, Australia
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Aedes aegypti (Linnaeus) was once highly prevalent across eastern Australia, resulting in epidemics of dengue fever. Drought conditions have led to a rapid rise in semi-permanent, urban water storage containers called rainwater tanks known to be critical larval habitat for the species. The presence of these larval habitats has increased the risk of establishment of highly urbanised, invasive mosquito vectors such as Ae. aegypti. Here we use a spatially explicit network model to examine the role that unsealed rainwater tanks may play in population connectivity of an Ae. aegypti invasion in suburbs of Brisbane, a major Australian city. We characterise movement between rainwater tanks as a diffusion-like process, limited by a maximum distance of movement, average life expectancy, and a probability that Ae. aegypti will cross wide open spaces such as roads. The simulation model was run against a number of scenarios that examined population spread through the rainwater tank network based on non-compliance rates of tanks (unsealed or sealed) and road grids. We show that Ae. aegypti tank infestation and population spread was greatest in areas of high tank density and road lengths were shortest e.g. cul-de-sacs. Rainwater tank non-compliance rates of over 30% show increased connectivity when compared to less than 10%, suggesting rainwater tanks non-compliance should be maintained under this level to minimize the spread of an invading Ae. aegypti population. These results presented as risk maps of Ae. aegypti spread across Brisbane, can assist health and government authorities on where to optimally target rainwater tank surveillance and educational activities. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s10530-021-02619-z.
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U.S. Potential of sustainable backyard distributed animal and plant protein production during and after pandemics
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To safeguard against meat supply shortages during pandemics or other catastrophes, this study analyzed the potential to provide the average household’s entire protein consumption using either soybean production or distributed meat production at the household level in the U.S. with: (1) pasture-fed rabbits, (2) pellet and hay-fed rabbits, or (3) pellet-fed chickens. Only using the average backyard resources, soybean cultivation can provide 80-160% of household protein and 0- 50% of a household’s protein needs can be provided by pasture-fed rabbits using only the yard grass as feed. If external supplementation of feed is available, raising 52 chickens while also harvesting the concomitant eggs or alternately 107 grain-fed rabbits can meet 100% of an average household’s protein requirements. These results show that resilience to future pandemics and challenges associated with growing meat demands can be incrementally addressed through backyard distributed protein production. Backyard production of chicken meat, eggs, and rabbit meat reduces the environmental costs of protein due to savings in production, transportation, and refrigeration of meat products and even more so with soybeans. Generally, distributed production of protein was found to be economically competitive with centralized production of meat if distributed labor costs were ignored. © 2021 by the author. Licensee MDPI, Basel, Switzerland.
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High throughput, small scale methods to characterise the growth of marine fungi.
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Various marine fungi have been shown to produce interesting, bioactive compounds, but scaling up the production of these compounds can be challenging, particularly because little is generally known about how the producing organisms grow. Here we assessed the suitability of using 100-well BioScreen plates or 96-well plates incubated in a robot hotel to cultivate eight filamentous marine fungi, six sporulating and two non-sporulating, to obtain data on growth and substrate (glucose, xylose, galactose or glycerol) utilisation in a high throughput manner. All eight fungi grew in both cultivation systems, but growth was more variable and with more noise in the data in the Cytomat plate hotel than in the BioScreen. Specific growth rates between 0.01 (no added substrate) and 0.07 h-1 were measured for strains growing in the BioScreen and between 0.01 and 0.27 h-1 for strains in the plate hotel. Three strains, Dendryphiella salina LF304, Penicillium chrysogenum KF657 and Penicillium pinophilum LF458, consistently had higher specific growth rates on glucose and xylose in the plate hotel than in the BioScreen, but otherwise results were similar in the two systems. However, because of the noise in data from the plate hotel, the data obtained from it could only be used to distinguish between substrates which did or did not support growth, whereas data from BioScreen also provided information on substrate preference. Glucose was the preferred substrate for all strains, followed by xylose and galactose. Five strains also grew on glycerol. Therefore it was important to minimise the amount of glycerol introduced with the inoculum to avoid misinterpreting the results for growth on poor substrates. We concluded that both systems could provide physiological data with filamentous fungi, provided sufficient replicates are included in the measurements.
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Relationships among generalized positive feedback loops determine possible community outcomes in plant-pollinator interaction networks.
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Attractors in Boolean network models representing complex systems such as ecological communities correspond to long-term outcomes (e.g., stable communities) in such systems. As a result, identifying efficient methods to find and characterize these attractors allows for a better understanding of the diversity of possible outcomes. Here we analyze networks that model mutualistic communities of plant and pollinator species governed by Boolean threshold functions. We propose a novel attractor identification method based on generalized positive feedback loops and their functional relationships in such networks. We show that these relationships determine the mechanisms by which groups of stable positive feedback loops collectively trap the system in specific regions of the state space and lead to attractors. Put into the ecological context, we show how survival units-small groups of species in which species can maintain a specific survival state-and their relationships determine the final community outcomes in plant-pollinator networks. We find a remarkable diversity of community outcomes: up to an average of 43 attractors possible for networks with 100 species. This diversity is due to the multiplicity of survival units (up to 34) and stable subcommunities (up to 14). The timing of species influx or outflux does not affect the number of attractors, but it may influence their basins of attraction.
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Human health effects of recycling and reusing plastic packaging in the food system: a systematic review and meta-analysis of life cycle assessments.
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Circular strategies, including recycling and reuse of food packaging, are critical responses to the plastic pollution crisis and could provide co-benefits and trade-offs for human health. Our meta-analysis of life cycle assessment (LCA) data quantifies possible health effects using Disability-Adjusted Life Years (DALYs) mediated by climate change, ozone, air pollution, toxicity, and water scarcity. We found strong evidence for reduced health risks with both a higher percentage of recycled content and a greater end- of-life recycling rate, resulting in around a day of healthy life saved per tonne of plastic packaging recycled. On average, reusable packaging reduced the health impacts associated with single use plastics after 30 uses, which is unlikely reflected in current consumer behaviour. Data from low- and middle-income countries, and greater use of health indicators in LCA, are urgently needed. LCA is a unique tool that could be optimised for interdisciplinary public health research on circular economies.
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Effect of Forced Molting on body characteristics and post-molting egg production performance of Layers in Quetta, Pakistan
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White leghorn layer (n=2740), with 85weeksof age, were submitted to forced molting by fasting for 13 days and changes in body characteristics and subsequent laying performance during second laying cycle were evaluated. Live body weight (LBW),ovary weight (OW), oviduct weight (OvW) and oviduct length (OvL) were measured before and after fasting. Post-fasting restricted feeding was applied, initially feeding crushed corn with added 2% Ca for 20 days and thereafter layer crumble feed was offered. Layers lost 632.16g (36%) of their LBW and significant reductions of 45.32, 47.53 and 54% were observed in post-fasting/molt OW, OvW and OvL, respectively (p 0.05). Resting period was 49 days and birds consumed 4.79kg feed during resting period. Egg production reached 50% in the 3rd week and peak mean egg production (87%) was recorded between 13 to16th weeks of production. Hence, it is concluded that while molting exhausted layers, the procedure adapted to induce molting and season would be a core factor in the subsequent laying cycle egg production and gain.
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Is the weight of plastic litter correlated with vegetal wrack? A case study from a Central Italian beach.
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This study analyzes the occurrence and distribution of plastic litter and the entrapment of plastic by wrack beached on a natural reserve. Large microplastics (2.5 - 5 mm) were the most abundant plastic size category detected. The main color and shape were white and fragment, respectively. The plastics entrapped by egagropiles were mainly transparent fibers. We analyzed the correlation between the weights of plastic litter and vegetal wrack in two transects, selected for their different environmental characteristics. The transect closer to a breakwater showed a significant positive correlation between the weights of plastics and wrack, while the other transect suggested a casual pattern of plastic deposition on the beach. Further research is suggested to focus on the role of breakwaters in altering marine currents and enhancing plastic beaching.
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Why does the number of dangerous species of scorpions increase? The particular case of the genus Leiurus Ehrenberg (Buthidae) in Africa
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The aim of this contribution is to bring some precise information on the reasons why the number of noxious scorpion species is constantly growing. This fact is directly associated with the zoological research on the domains generally defined as systematics and taxonomy. The classification of any zoological group is in most cases a source of problem for most biologists not directly involved with this almost confidential aspect of the zoological research. Much information has been gathered and published over two centuries on the classification but it is remains poorly accessible and too technical for non-experts. The exposed example could be taken from several groups of scorpions possessing infamous species, but the choice went to the genus Leiurus Ehrenberg, 1828 distributed from North Africa to the Middle East. Maybe this contribution will help to explain why so numerous cases of species misidentification are regularly present in the general literature devoted to scorpion venoms and incidents.
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Ritual Slaughter: The Tradition of Pilot Whale Hunting on the Faroe Islands
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Faroese people consider grindadráp, the hunting of pilot whales, as a part of their cultural heritage, but from the point of view of veterinary sciences and biology, the method of killing pilot whales is a form of a ritual slaughter performed on fully conscious animals that are aware of their circumstances. Pilot whales are social, intelligent, and communicative animals that demonstrate complex social behaviors. Therefore, this traditional whaling method should be considered as a procedure in which animals are exposed to high levels of distress. In the context of contemporary civilizational development and material welfare, the practice of whaling may appear to be an inadequate and cruel relic of the past. This text explores social and cultural issues caused by pilot whale hunts and presents an understanding of the term tradition and some perspectives of how traditions change. The specificity of pilot whales as a species is presented, setting a foundation for a discussion about hunting itself. The conclusion of the text discusses different social perceptions of grindadráp by presenting arguments for and against the hunting. This analysis includes a presentation of actions undertaken bywhale hunting opponents.
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The dairy sector in the Azores Islands: possibilities and main constraints towards increased added value
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The Azores archipelago is the most suitable region for dairy production in Portugal, representing 30% of the overall Portuguese dairy production. It has a production system characterized by an average milk yield of 6216 kg/cow/year, and the predominance of pasture-based feeding and cows that have longer productive lives and lower incidence of metabolic/production diseases, such as acidosis or mastitis. The biggest problem with the Azores Islands dairy sector is the cost of transport, as the main markets are located in continental Portugal, over 1500 km away, and local dairy products have to compete with dairy products produced in mainland Portugal and in the rest of the European Union. Herein, the evolution of the dairy sector in the Azores Islands from 2007 to 2017 is presented. A SWOT (Strength, Weakness, Opportunity, and Threat) analysis was performed to find potential solutions to increase the value of the Azorean dairy sector. The most relevant solution considered was the valorization of the dairy production through three major aspects: higher milk quality, namely, better organoleptic properties; lower carbon footprint (not considering transport costs); and higher levels of animal welfare. Three examples are shown of such valorization: protected denomination of origin (PDO) cheeses, the “happy cows” program, and the production of an organic milk, from the Terceira Island. Some of these programs are relatively recent, so, it will be interesting to see how their sales and acceptance by consumers evolve, particularly under the current economic framework.
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Multiple stressor effects on alpha, beta and zeta diversity of riverine fish
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We examined the effects of regional scale land use and local scale environmental and biotic stressors on alpha, beta and zeta diversities of native fish communities in wadeable streams and non-wadeable rivers in the Danube basin, Hungary. Relationships among land use and local scale environmental and biotic stressors were weak both in streams and rivers, suggesting that these stressors act relatively independently. Alpha diversity decreased strongly with increasing local scale environmental stressor intensity in rivers. On the contrary, its response to stressors was more obscure in streams, where the best-fit statistical model indicated the importance of the interaction between land use, local scale environmental and biotic stressors, while the secondly ranked model highlighted the negative impact of local scale environmental stressors. Analysis of variance using distance matrices provided evidence that stressors alone and in interactions explained compositional differences of pairs of study sites (beta diversity). Considering the degree of overall degradation, both local (alpha) and among-site (beta and zeta) diversity indices responded to increasing stressor intensity, generally negatively. Riverine fish communities showed higher degrees of similarity (lower beta and higher zeta) than stream fish communities. They also showed increasing similarity (i.e. homogenization) with increasing overall stressor intensity, unlike stream fish communities, which showed no relationship with overall stressor intensity. Our results suggest that the relationships between land use and local scale environmental and biotic stressors can be complex and so do their effects on biodiversity. While stressor specific indices can provide information on the role of specific stressors in some cases, the examination of overall stressor effects is needed to assess realistically the effects of anthropogenic disturbances on native fish diversity. Diversity indices that quantify among-site changes in species composition, such as measures of beta and zeta diversity, can be fruitful for better understanding the role of multiple stressors in structuring ecological communities.
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Bulked Segregant Analysis and Association Analysis Identified the Polymorphisms Related to the Intermuscular Bones in Common Carp (Cyprinus carpio)
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The allotetraploid common carp is one of the most important freshwater food fish. However, the IBs found in allotetraploid common carp increase the difficulty in fish meat processing and consumption. Although candidate genes associated with the total IB number have been identified, the SNPs associated with the numbers of the total IBs and different forms of IBs have not yet been identified, hindering the breeding of IB-reduced common carp. Herein, the numbers of different types of IBs in three common carp strains were measured. Using whole-genome resequencing and bulked segregant analysis in three pairs of IB-more and IB-less groups, we identified the consensus nonsynonymous SNPs in three strains of common carp. Screening the flanking regions of these SNPs led to the detection of other SNPs. Association study detected 21 SNPs significantly associated with the number of total IBs, epineural-IBs, and ten detailed types of IBs. We observed the joint effects of multiple SNPs on each associated IB number with an improved explained percentage of phenotypic variation. The resulting dataset provides a resource to understand the molecular mechanisms of IB development in different common carp strains. These SNPs are potential markers for future selection to generate IB-reduced common carp.
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Seasonal variations of serotonin in the visual system of an ant revealed by immunofluorescence and a machine learning approach
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Hibernation, as an adaptation to seasonal environmental changes in temperate or boreal regions, has profound effects on mammalian brains. Social insects of temperate regions hibernate as well, but despite abundant knowledge on structural and functional plasticity in insect brains, the question of how seasonal activity variations affect insect central nervous systems has not yet been thoroughly addressed. Here, we studied potential variations of serotonin-immunoreactivity in visual information processing centres in the brain of the long-lived ant species Lasius niger. Quantitative immunofluorescence analysis revealed stronger serotonergic signals in the lamina and medulla of the optic lobes of wild or active laboratory workers than in hibernating animals. Instead of statistical inference by testing, differentiability of seasonal serotonin-immunoreactivity was confirmed by a machine learning analysis using convolutional artificial neuronal networks (ANNs) with the digital immunofluorescence images as input information. Machine learning models revealed additional differences in the third visual processing centre, the lobula. We further investigated these results by gradient-weighted class activation mapping. We conclude that seasonal activity variations are represented in the ant brain, and that machine learning by ANNs can contribute to the discovery of such variations.
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Meteorological patterns and the evolution of West Nile virus in an environmentally stressed Mediterranean area
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The present work investigates the increase of confirmed cases of West Nile virus and the relationship between weather-related patterns and the geographical expansion of West Nile virus in Greece, with a special focus on West Attica, Central Greece, a semi-arid, ecologically fragile Mediterranean area. Using data from the European Environment Agency, European Drought Observatory of Joint Research Centre, the pairwise relationship between surface air temperature anomalies, precipitation anomalies, soil moisture index anomalies, and the fraction of absorbed photosynthetically active radiation anomalies (fAPAR) was evaluated during summer time of 2018, a particularly intense virus outbreak. The empirical results of this study indicate that total precipitation during 2018 was extremely high, nearly 500% above the average. These conditions contributed to the increase of soil moisture index anomaly and fAPAR, creating an ideal microenvironment (wet soils and green pastures) for mosquito breeding. This phenomenon was directly associated with a drastic outbreak of West Nile virus cases in the area, compared with earlier years. Our results indicate how unusually high values of summer precipitation may have contributed (both through direct and indirect ecological channels) to the rapid spread of the West Nile virus in West Attica, causing a significant number of confirmed cases and fatalities. Climate change may bring forth other issues aside from natural disasters, including—but not limited to—virus expansion.
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Changes in Greenhouse Grown Tomatoes Metabolite Content Depending on Supplemental Light Quality
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Tomatoes (Solanum lycopersicum L.) are good source of several biologically active compounds and antioxidants, especially lycopene, phenolic compounds, and vitamins. Tomatoes are found all over the world and are cultivated in a wide variety of environmental conditions. Light-emitting diode (LED) lamps are increasingly being used in the cultivation of tomatoes due to their cost-effectiveness and wide range of possibilities to adapt the spectrum of light emitted to the needs of plants. The aim of this study is to evaluate the effect of different additional lighting used in the greenhouse on the accumulation of biologically active compounds in different varieties of tomato fruit. Chemical composition-content of organic acids, lycopene, total carotenoids, total phenolics and flavonoids as well as dry matter, soluble solids content, and taste index were determined in five tomato cultivars ("Bolzano F1," "Chocomate F1," "Diamont F1," "Encore F1," and "Strabena F1"), which were cultivated in greenhouse in an autumn-spring season by using additional lighting with 16 h photoperiod. Three different lighting sources were used: LED, induction (IND) lamp, and high-pressure sodium lamp (HPSL). Experiments were performed during 3 years. Results showed that tomato varieties react differently to the supplemental lighting used. Cultivars, such as "Encore" and "Strabena," are the most unresponsive to supplemental light. Experiments have shown that HPSL stimulates the accumulation of primary metabolites in tomato fruit. In all the cases, soluble solids content was 4.7-18.2% higher as compared to other lighting sources. As LED and IND lamps emit about 20% blue-violet light, the results suggest that blue-violet light of the spectrum stimulates the accumulation of phenolic compounds in the fruit by 1.6-47.4% under IND and 10.2-15.6% under LED compared to HPSL. Red fruit varieties tend to synthesize more ß-carotene under supplemental LED and IND light. An increase of blue promotes the synthesis of secondary metabolites.
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Diversity of Anaerobic Methane Oxidizers in the Cold Seep Sediments of the Okinawa Trough
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Active cold seeps in the Okinawa Trough (OT) have been widely identified, but the sediment microbial communities associated with these sites are still poorly understood. Here, we investigated the distribution and biomass of the microbial communities, particularly those associated with the anaerobic oxidation of methane (AOM), in sediments from an active cold seep in the mid-Okinawa Trough. Methane-oxidizing archaea, including ANME-1a, ANME-1b, ANME-2a/b, ANME-2c, and ANME-3, were detected in the OT cold seep sediments. Vertical stratification of anaerobic methanotrophic archaea (ANME) communities was observed in the following order: ANME-3, ANME-1a, and ANME-1b. In addition, the abundance of methyl coenzyme M reductase A (mcrA) genes corresponded to high levels of dissolved iron, suggesting that methane-metabolizing archaea might participate in iron reduction coupled to methane oxidation (Fe-AOM) in the OT cold seep. Furthermore, the relative abundance of ANME-1a was strongly related to the concentration of dissolved iron, indicating that ANME-1a is a key microbial player for Fe-AOM in the OT cold seep sediments. Co-occurrence analysis revealed that methane-metabolizing microbial communities were mainly associated with heterotrophic microorganisms, such as JS1, Bathy-1, and Bathy-15.
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Phenotypic and molecular analyses in rice weevil, Sitophilus oryzae (Linneaus) (Coleoptera: Curculionidae): Identification of a super kdr mutation, T929I conferring resistance to deltamethrin
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BACKGROUND: The rice weevil, Sitophilus oryzae (L.) (Coleoptera: Curculionidae) is a cosmopolitan pest of stored cereal grains and other commodities globally. Infestations caused by S. oryzae makes grains unsuitable for consumption, processing, and export. Deltamethrin, a synthetic pyrethroid insecticide, is widely used in major grain storages in India as a prophylactic treatment to control this pest. However, recurrent use of this insecticide had led to genetic resistance in S. oryzae, questioning its ongoing use at the current recommended concentration. RESULTS: Dose response analysis of resistant (Delta-R) and susceptible (Lab-S) strains of S. oryzae collected from grain storages across southern India, revealed that Delta-R was 134-fold more resistant than the Lab-S at LC50 . A concentration of 180 ppm over 48 h effectively discriminated 16 resistant field populations from Lab-S with per cent resistance ranging from 8.72 to 75.86%. Exposing all the resistant populations to 1000 ppm over 48 h identified twelve populations with strongly resistant individuals and confirmed the existence of two distinct resistance phenotypes, 'weak' and 'strong' in S. oryzae. Furthermore, sequence analysis of the vgsc gene in Delta-R identified a single target site mutation, T929I conferring resistance in S. oryzae. CAPS marker analysis of this allele confirmed that frequency of resistance is high (up to 0.96) supporting the results of phenotypic analysis. CONCLUSION: Both phenotype and molecular marker analyses clearly demonstrated that deltamethrin at 180 and 1000 ppm can be used to discriminate weakly and strongly resistant populations in S. oryzae, respectively. Resistance diagnostics based on the mutation, T929I, supports our phenotypic data and indicates that resistance to deltamethrin in S. oryzae is prevalent in southern parts of India, stressing the need to identify a synergist or suitable alternatives. This article is protected by copyright. All rights reserved.
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Information use in colonial living.
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Despite the fact that many animals live in groups, there is still no clear consensus about the ecological or evolutionary mechanisms underlying colonial living. Recently, research has suggested that colonies may be important as sources of social information. The ready availability of information from conspecifics allows animals to make better decisions about avoiding predators, reducing brood parasitism, migratory phenology, mate choice, habitat choice and foraging. These choices can play a large part in the development and maintenance of colonies. Here we review the types of information provided by colonial animals and examine the different ways in which decision-making in colonies can be enhanced by social information. We discuss what roles information might take in the evolution, formation and maintenance of colonies. In the process, we illustrate that information use permeates all aspects of colonial living.
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Healthy microbiome: a key to successful and sustainable shrimp aquaculture
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The microbiome of the host and its surroundings play a vital role in its health and well-being Unlike the terrestrial organisms that maternally acquire its microbiome, the aquatic species mainly get colonized by the microorganisms in its aquatic surrounding and are exposed to a wide variety of microbial community based on the type of aquatic environment the host inhabits This review is focused on the aquaculture and shrimp microbiome and factors that influence its microbiome such as prebiotics, probiotics, synbiotics, diet, stress conditions, frequency and type of antibiotics used, host physiological conditions and developmental stages This review also casts light on the role of the microbiome in enhancing the shrimp health, immune response, microbial colonization, and the effects of the biofloc system on shrimp and aquaculture microbiome Moreover, beneficial microbes can be a safer alternative to harmful antibiotics used in aquaculture, which can thereby prevent the emergence of superbugs and also enhance the production rate A proper understanding of the interactions between the host and its microbiome can help us to modulate and manipulate the aquaculture microbiome to enhance the health of aquatic organisms, which ensures the growth of the aquaculture industry Therefore, the treatment strategies should be targeted towards the modulation of shrimp and aquaculture microbiome, which acts as beneficial partners to overcome the challenges confronted by the aquaculture sector
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Divergence in energy sources for Prochilodus lineatus (Characiformes: Prochilodontidae) in Neotropical floodplains
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The stable carbon isotopic variability and the contributions of autochthonous (sediment microbial biomass, phytoplankton, and periphyton) and allochthonous (soil microbial biomass) sources available to the detritivorous fish Prochilodus lineatus were investigated in three environments of the floodplain of the Upper Paraná River. The isotopic composition of carbon sources and fish varied significantly among the studied environments. The autochthonous resources, represented by the phytoplankton, were the most assimilated by the species, followed by periphyton and sediment microbial biomass. The species used the sources differently in each environment. This study suggests that the inherent characteristics of this area, as well as the size of the watershed, the dry season, anthropogenic actions, and phytoplankton productivity, favor the use of autochthonous resources by the species studied. Therefore, studies in the floodplain should employ an eco-hydrological approach that quantifies the magnitude of energy subsidies, as well as an access route to consumers, knowledge about the selectivity of detritivorous species and the effects of different land uses.(AU)
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The Optimal Ambient Conditions for World Record and World Class Performances at the Berlin Marathon
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The “Berlin Marathon” is the fastest marathon racecourse in the world and has witnessed 11 world records (WRs; eight in men and three in women). Weather conditions can have an important impact on race time and we therefore examined the influence of environmental conditions (i.e., temperature, sunshine, precipitation, barometric pressure, and cloud cover) on WRs and elite (i.e., winner, top three and top 10 finishers) marathon performances of men and women at the “Berlin Marathon” between 1974 and 2019. Average world record marathon times in men were 2:03:52 ± 0:01:19 h:min:s and 2:25:05 ± 0:08:25 h:min:s in females (p < 0.05). Male competitions were held 44 times (mean winning time: 2:09:48 ± 0:09:15 h:min:s) and female competitions 41 times (mean winning time: 02:30:35 ± 0:19:09 h:min:s; p < 0.05). World record performances were set at mean temperatures of 18.61 ± 2.59°C for men and 13.07 ± 4.01°C for women (p > 0.05). The ideal environmental conditions for world record performances for men were temperatures of 18.61°C (p > 0.05), sunny, mostly dry days, with higher atmospheric pressure and little cloud cover (all p > 0.05). In women, ideal conditions for world records performances were temperatures of 13.07°C (p > 0.05), with low atmospheric pressure (p > 0.05), but significantly more rain (p < 0.05), and with no sunshine (p < 0.05) and cloud cover (p < 0.05). With elite performances, the ideal temperatures were of 17.36 ± 4.33°C for men and 17.93 ± 4.07°C for women (p > 0.05), with little to no rain, and moderate cloud cover and sunshine (p > 0.05). In summary, novel findings are, that environmental conditions in world records performances differ between men and women, with women obtaining world records in bad weather (with rain, cloud cover, and no sunshine) and men in good weather (sunny, mostly dry days, with little cloud cover). Larger sample sizes are needed to examine sex differences and environmental conditions on world record marathon performances.
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Many Oil Wells, One Evil: Potentially toxic metals concentration, seasonal variation and Human Health Risk Assessment in Drinking Water Quality in Ebocha-Obrikom Oil and Gas Area of Rivers State, Nigeria.
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Background Oil and natural gas extraction have produced environmental pollution at levels that affect reproductive health of indigenous populations. Accordingly, polluted drinking water from physical, chemical and heavy metals can result in serious health problems, like anemia, kidney failure, immunosuppression, neurological impairments, gastrointestinal as well as respiratory irritation, skeletal system abnormalities, liver inflammation, liver cancer, cardiovascular diseases after chronic exposure and other cancer diseases with negative health effects. These diseases types remain associated to high amounts of heavy metal elements such as lead, chromium, zinc, copper, cadmium, manganese as well as nickel etc. Objectives Compare differences in water quality parameters in the study area (determine the level of pollutions in the different sites). Methodology: The investigation made use of standard analytical procedures. All sampling, conservation, transportation and analysis followed standard procedures described in APHA (2012). To prevent degradation of the organic substances, all obtained samples were transferred to the laboratory, while keeping in an icebox. Results: Result shows that during wet season, the mean values obtained for water quality parameters were significantly lower in site 9 compared with that obtained in other sites (p<0.05) with the exemptions of temperature, DO, BOD, COD, acidity, TH, TDS, K, Mg, Zn, Mn, Cd, Pb, Cu, Cr, NH3, NO2, NO3, Ni though slightly lower in most cases in site 9 were not significantly different (p>0.05) and both alkalinity and SO4 which were significantly higher in site 9 than site 1 (p<0.05). Result obtained during dry season reveals that there is no remarkable difference in pH, acidity, Pb and Ni between the nine sites (p>0.05) while other water quality parameters were significantly lower in site 9 than other sites excluding Cl and Mg which were both significantly higher in site 9 than site 8 (p<0.05). Conclusion: To guarantee quality groundwater supply for various purposes in Nigeria's core Niger Delta region, extra efforts must be taken to fully understand hydrogeochemical features and its suitability. Thus, this study will aid in the development of a quantitative understanding of the effects of diverse causes on groundwater level fluctuations in any aquifer around the world. Also, this analysis reinforces a valuable resource for researchers, activists and public officials seeking to help enhance community awareness, planning and performance. The verdicts would remain a valuable guideline for policymakers, the Ministry of Water Resources and development practitioners, as this highlights the requirement for suitable approaches toward mitigating toxic element of water resources contamination in the core Niger Delta toward safeguarding health of the public from carcinogenic as well as non-carcinogenic risks.
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The microplastic profile of an urban African stream.
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Microplastics are small plastic fragments that have been found around the world, however, research into microplastics in Africa and freshwater systems remains insufficient. In this study, the snapshot microplastic profile of an urban stream was assessed in the Braamfontein Spruit, located in Johannesburg the largest city in South Africa. The abundance of microplastics was determined in water, Chironomus sp. larvae and sediment, while in situ parameters were taken to investigate their relationship to the microplastic profile of the different matrices. Microplastics were detected in water (mean of 705 particles m-3), Chironomus sp. larvae (mean of 53.4 particles g-1 wet weight) and sediment (mean of 166.8 particles kg-1 dry weight). The study found evidence of how urban stream characteristics such as a weir, stream depth and velocity could affect the abundance and dispersion of microplastics. The results indicate that areas of increased depth and decreased flow allowed microplastics to settle down to the sediment where benthic macroinvertebrates could ingest these fragments. Large obstructions like a weir also increased microplastic counts in sediment and invertebrates above the obstruction, with a decrease of fragments after the obstruction, however, microplastics in surface water were able to flow over the obstruction and increase in abundance downstream. This study concludes that first order urban streams such as the Braamfontein Spruit may be contributing large numbers of microplastics to higher order streams and large rivers in times of increased flow.
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Investigating Underfloor and Between Floor Deposits in Standing Buildings in Colonial Australia
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Archaeological deposits build up inside standing buildings both under and between floors and these have the potential to provide considerable information about human behavior in the past. Under and between floor spaces provide a unique depositional environment that allow the survival of rare and fragile organic materials that typically do not survive in other archaeological contexts, including paper, cardboard, fabric and other fibres, seeds, leather, and human hair and skin cells. However, they require a clear understanding of depositional processes to allow their interpretation. Experimental archaeology was conducted to understand the process of artifact deposition and the interpretation of underfloor deposits in twelve standing buildings in Western Australia. Floors were built and a range of artifacts swept across them to determine how artifacts travelled across floorboards or fell through gaps between boards. Size, shape, and angularity of artifacts were key determinants of the likelihood of deposition. Sweeping activity makes it more likely that material will be deposited around the margins of rooms, and particularly, to either side of doorways. Underfloor deposits excavated from two specific Western Australian buildings, Ellensbrook Homestead, and the York Residency Museum, are interpreted based on the results of these experiments.
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New occurrences of the Genus Cestrum L. (Solanaceae) taxon for the state of Bahia-Brazil - DOI: 10.4025/actascibiolsci.v27i1.1357/ Novos registros do táxon Cestrum L. (Solanaceae) para o Estado da Bahia-Brasil - DOI: 10.4025/actascibiolsci.v27i1.1357
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The objective of this study was to carry out a survey of the Cestrum species for southern Bahia. Systematic monthly collections of Cestrum were made in areas of southern Bahia Atlantic moist forest. The collected material was identified, described, and illustrated employing conventional methodology for botanical systematics. The following specimens were collected and identified in this Cestrum lanceolatum Schott. Ex Sendtn, C. megalophyllum Dunal, C. parqui LHer, and C. schlectendahlii G. Don
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Revision of the coral genus Acropora (Scleractinia: Astrocoeniina: Acroporidae) in Indonesia
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The coral genus Acropora is reviewed from Indonesia for the first time, following detailed collections made at 131 sites and additional material collected from approximately 40 sites throughout the archipelago during the period 1993–6. Eighty‐three species are recorded, four of these (Acropora halmaherae, A. awi, A. plumosa and A. simplex) new to science, six first described in 1994 and six in 1997. Records are compared with specimen‐based records from localities worldwide. The species of Acrokora occurring in Indonesian waters include five recorded only from the Indian Ocean and Indonesia, seven recorded only from the Pacific Ocean, South China Sea and Indonesia, and a further 10 species apparently endemic to Indonesia, as well as widespread Indo‐Pacific species. Two species (A. jacquelineae Wallace, 1994 and A. batunai Wallace, 1996) are recorded only from north central Indonesia and Papua New Guinea, and two species (A. russelli Wallace, 1994 and A. turaki Wallace, 1994) only from north central Indonesia and north western Australia. The findings contribute to a new view of the corals of the Indo‐Pacific ‘centre of diversity’ as a composite fauna with origins in a number of events in space and time.
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Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia
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Concatenated sequence analysis with 16S rRNA, rpoB and fusA genes identified a bacterial strain (IRBG74) isolated from root nodules of the aquatic legume Sesbania cannabina as a close relative of the plant pathogen Rhizobium radiobacter (syn. Agrobacterium tumefaciens). However, DNA:DNA hybridization with R. radiobacter, R. rubi, R. vitis and R. huautlense gave only 44%, 5%, 8% and 8% similarity respectively, suggesting that IRBG74 is potentially a new species. Additionally, it contained no vir genes and lacked tumour‐forming ability, but harboured a sym‐plasmid containing nifH and nodA genes similar to those in other Sesbania symbionts. Indeed, IRBG74 effectively nodulated S. cannabina and seven other Sesbania spp. that nodulate with Ensifer (Sinorhizobium)/Rhizobium strains with similar nodA genes to IRBG74, but not species that nodulate with Azorhizobium or Mesorhizobium. Light and electron microscopy revealed that IRBG74 infected Sesbania spp. via lateral root junctions under flooded conditions, but via root hairs under non‐flooded conditions. Thus, IRBG74 is the first confirmed legume‐nodulating symbiont from the Rhizobium (Agrobacterium) clade. Cross‐inoculation studies with various Sesbania symbionts showed that S. cannabina could form fully effective symbioses with strains in the genera Rhizobium and Ensifer, only ineffective ones with Azorhizobium strains, and either partially effective (Mesorhizobium huakii) or ineffective (Mesorhizobium plurifarium) symbioses with Mesorhizobium. These data are discussed in terms of the molecular phylogeny of Sesbania and its symbionts.
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Effect of donor-recipient relatedness on the plasmid conjugation frequency: a meta-analysis.
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BACKGROUND Conjugation plays a major role in the transmission of plasmids encoding antibiotic resistance genes in both clinical and general settings. The conjugation efficiency is influenced by many biotic and abiotic factors, one of which is the taxonomic relatedness between donor and recipient bacteria. A comprehensive overview of the influence of donor-recipient relatedness on conjugation is still lacking, but such an overview is important to quantitatively assess the risk of plasmid transfer and the effect of interventions which limit the spread of antibiotic resistance, and to obtain parameter values for conjugation in mathematical models. Therefore, we performed a meta-analysis on reported conjugation frequencies from Escherichia coli donors to various recipient species. RESULTS Thirty-two studies reporting 313 conjugation frequencies for liquid broth matings and 270 conjugation frequencies for filter matings were included in our meta-analysis. The reported conjugation frequencies varied over 11 orders of magnitude. Decreasing taxonomic relatedness between donor and recipient bacteria, when adjusted for confounding factors, was associated with a lower conjugation frequency in liquid matings. The mean conjugation frequency for bacteria of the same order, the same class, and other classes was 10, 20, and 789 times lower than the mean conjugation frequency within the same species, respectively. This association between relatedness and conjugation frequency was not found for filter matings. The conjugation frequency was furthermore found to be influenced by temperature in both types of mating experiments, and in addition by plasmid incompatibility group in liquid matings, and by recipient origin and mating time in filter matings. CONCLUSIONS In our meta-analysis, taxonomic relatedness is limiting conjugation in liquid matings, but not in filter matings, suggesting that taxonomic relatedness is not a limiting factor for conjugation in environments where bacteria are fixed in space.
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Evaluation of coat color inheritance and production performance for crossbreed from Chinese indigenous Chenghua pig crossbred with Berkshire
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Objective: This work was to determine coat inheritance and evaluate production performance for crossbred pigs from Berkshire × Chenghua (BC) compared with Chinese indigenous Chenghua (CH) pigs. Methods: The coat color phenotypes were recorded for more than 16,000 pigs, and the genotypes of MC1R gene were identified by sequencing. The reproductive performance of 927 crossbred BC F4 gilts and 320 purebred CH gilts was recorded. Sixty pigs of each breed were randomly selected at approximately 60 days of age to determine growth performance during fattening period, which lasted for 150 days for BC pigs and 240 days for CH pigs. At the end of the fattening period, 30 pigs of each breed were slaughtered to determine carcass composition and meat quality. Results: The coat color of BC pigs exhibits a "dominant black" hereditary pattern, and all piglets derived from boars or sows genotyped ED1ED1 homozygous for MC1R gene showed a uniform black coat phenotype. The BC F4 gilts displayed a good reproductive performance, showing a higher litter and tear size and were heavier at farrowing litter and at weaning litter than the CH gilts, but they reached puberty later than the CH gilts. BC F4 pigs exhibited improved growth and carcass characteristics with a higher average daily live weight gain, lower feed-to-gain ratio, and higher carcass lean meat rate than CH pigs. Like CH pigs, BC F4 pigs produced superior meat-quality characteristics, showing ideal pH and meat-color values, high intramuscular fat content and water-holding capacity, and acceptable muscle-fiber parameters. C18:1, C16:0, C18:0, and C18:2 were the main fatty acids in M. longissimus lumborum in the two breeds, and a remarkably high polyunsaturated/saturated fatty acid ratio of ~0.39 was observed in the BC F4 pigs. Conclusion: The BC F4 pigs exhibit a uniform black coat pattern and acceptable total production performance.
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Genome-wide identification, characterization and expression profile of glutaredoxin gene family in relation to fruit ripening and response to abiotic and biotic stresses in banana (Musa acuminata).
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Glutaredoxins (GRXs) are disulfide oxidoreductases that are involved in various biological processes. However, little information on the role of GRXs in the regulation of fruit ripening and the response to stress is available. In this study, we isolated 64 GRX genes from banana genome. Their encoded GRX proteins could be classified into four classes: CC, CGFS, CPYC and GRL types. The distribution and synteny of these GRXs on chromosomes, the gene structures, the promoter sequences, and the possible protein subcellular localizations were characterized. Molecular interaction network analysis suggested that MaGRX might interact with glutathione reductase (GR), sulfiredoxin, peroxiredoxin (Prx), and NADPH-dependent thioredoxin reductase C (NTRC), contributing to the antioxidative defense of banana fruit. MicroRNA prediction showed that MaGRX genes might be targeted by different miRNAs. Transcriptome analysis characterized the expression profiles of different MaGRX genes during banana fruit ripening, and in response to different storage stresses. The results suggested that CC-type, CPYC-type and GRL-type MaGRXs might be more active than CGFS-type MaGRXs during banana fruit ripening and the response to stress. Moreover, MaGRX6/7/9/11/17/23/28 and MaGRL3/16/19 might play important roles in regulating fruit ripening or in response to low and high temperature, or Fusarium proliferatum infection.
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Mapping environmental suitability of Haemagogus and Sabethes spp. mosquitoes to understand sylvatic transmission risk of yellow fever virus in Brazil
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BACKGROUND: Yellow fever (YF) is an arboviral disease which is endemic to Brazil due to a sylvatic transmission cycle maintained by infected mosquito vectors, non-human primate (NHP) hosts, and humans. Despite the existence of an effective vaccine, recent sporadic YF epidemics have underscored concerns about sylvatic vector surveillance, as very little is known about their spatial distribution. Here, we model and map the environmental suitability of YF’s main vectors in Brazil, Haemagogus spp. and Sabethes spp., and use human population and NHP data to identify locations prone to transmission and spillover risk. METHODOLOGY/PRINCIPAL FINDINGS: We compiled a comprehensive set of occurrence records on Hg. janthinomys, Hg. leucocelaenus, and Sabethes spp. from 1991–2019 using primary and secondary data sources. Linking these data with selected environmental and land-cover variables, we adopted a stacked regression ensemble modelling approach (elastic-net regularized GLM, extreme gradient boosted regression trees, and random forest) to predict the environmental suitability of these species across Brazil at a 1 km x 1 km resolution. We show that while suitability for each species varies spatially, high suitability for all species was predicted in the Southeastern region where recent outbreaks have occurred. By integrating data on NHP host reservoirs and human populations, our risk maps further highlight municipalities within the region that are prone to transmission and spillover. CONCLUSIONS/SIGNIFICANCE: Our maps of sylvatic vector suitability can help elucidate potential locations of sylvatic reservoirs and be used as a tool to help mitigate risk of future YF outbreaks and assist in vector surveillance. Furthermore, at-risk regions identified from our work could help disease control and elucidate gaps in vaccination coverage and NHP host surveillance.
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Surviving the Wildlife Trade in Southeast Asia: Reforming the ‘Disposal’ of Confiscated Live Animals under CITES
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Simple SummaryIn response to the illegal wildlife trade, successful enforcement often involves the seizure, confiscation, and subsequent management of illegally traded wildlife Unfortunately, confiscated live animals often experience substandard care In this study, we investigate the barriers to the ‘disposal’ of confiscated live animals in Southeast Asia ‘Disposal’ is the term used for what happens to illegally traded wildlife after confiscation Guidelines for the ‘disposal’ of live specimens are provided by the Convention on the International Trade in Endangered Species of Wild Fauna and Flora (CITES), although individual nations must enforce this within their own legislation We interviewed 18 experts from seven countries in Southeast Asia revealing eight categories of barriers to the disposal of confiscated live animals We then propose seven recommendations to help reform the disposal of confiscated live animals, which would support the efficient and humane management of illegally traded wildlife in Southeast Asia and globally AbstractIncreased focus on the illegal global wildlife trade has resulted in greater numbers of live animals confiscated by authorities, increasing the need to manage these animals responsibly Most wildlife seizures take place in Southeast Asia, with global demand for live animals fuelling much of the trafficking Guidelines for the ‘disposal’ of live specimens are provided by the Convention on the International Trade in Endangered Species of Wild Fauna and Flora (CITES), although individual Parties must implement provisions through national laws and regulations ‘Disposal’ is the term used for the management of illegally traded wildlife upon confiscation Confiscated live animals can be euthanised (i e , killed), repatriated to their native country and released, or kept in captivity This study investigates barriers to proper care and disposal of confiscated live animals in Southeast Asia, where roughly one quarter of the global multibillion dollar illegal wildlife trade takes place Interviews were conducted with 18 professionals working within conservation, wildlife crime, and confiscated live animal management Eight limitations to the proper care and disposal of confiscated wildlife were identified: (1) political will, (2) policy, (3) funding, (4) capacity, (5) expertise (6) attitudes and behaviours, (7) exploitation, and (8) corruption Based on interviews, we propose seven key reforms to support the efficient and humane management of illegally traded wildlife for national authorities and CITES parties These are wildlife seizure management, legislative support, enhanced political will, demand reduction, global participation, registry of rescue centres, and terminology change This research highlights major barriers to the proper care and disposal of live confiscated animals and proposes key reforms to improve the conservation of threatened species and the welfare of millions of illegally traded animals
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Mixed-species Association among Malaysian Primates during the Covid-19 Outbreak in Genting Highlands, Peninsular Malaysia
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This is the first report to elucidate primate mixed-species association during Covid-19 outbreak in Malaysia The observations were carried out at Genting Highlands between 14-24th April 2020 using ad libitum sampling Five Genting Highlands primate species were observed at approximately 66 observation hours which include Symphalangus syndactylus (siamang), Trachypithecus obscurus obscurus (dusky langur), Presbytis siamensis siamensis (Malayan pale-thighed surili), Macaca nemestrina (southern pig-tailed macaque), and Macaca fascicularis (long-tailed macaque) Primates in Genting Highlands were seen interacting among themselves during the third phase of the MCO Siamangs, dusky langurs, and long-tailed macaques were observed sharing space and interacting in an old section of Genting View Resorts that is currently under renovation Malayan pale-thighed langurs were also observed approaching this area During the third phase of the MCO, siamangs, dusky langurs, long-tailed macaques, and pig-tailed macaques consumed fruits of the fig tree (Ficus benjamina), which last for only one week Strict controls on public movement are believed to have created environmental conditions that enabled Genting Highlands primates to move and interact freely among themselves © Penerbit UMT
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Social Apoptosis in Varroa Mite Resistant Western Honey Bees (Apis mellifera)
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Honey bees are eusocial animals that exhibit both individual and social immune responses, which influence colony health. This is especially well-studied regarding the mite Varroa destructor Anderson and Trueman (Parasitiformes: Varroidae), a parasite of honey bee brood and disease vector. Varroa was introduced relatively recently to Apis mellifera L. (Hymenoptera: Apidae) and is a major driver of the catastrophic die-off of honey bee colonies in the last decade. In contrast, the original host species, Apis cerana Fabricius (Hymenoptera: Apidae) is able to survive mite infestations with little effect on colony health and survival. This resilience is due in part to a newly identified social immune response expressed by developing worker brood. Varroa infested female A. cerana brood experience delayed development and eventually die in a process called 'social apoptosis'. Here, an individual's susceptibility to Varroa results in colony level resistance. We tested for the presence of the social apoptosis trait in two Varroa resistant stocks of A. mellifera (Pol-line and Russian) with different selection histories and compared them to a known Varroa-susceptible stock (Italian). We assessed the survival and development of worker brood reared in either highly or lightly infested host colonies, then receiving one of three treatments: uninfested, experimentally inoculated with a Varroa mite, or wounded to simulate Varroa damage. We found that response to treatment was only differentiated in brood reared in lightly infested host colonies, where experimentally infested Russian honey bees had decreased survival relative to the mite-susceptible Italian stock. This is the first evidence that social apoptosis can exist in Western honey bee populations.
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Tissue specificity of (E)-β-farnesene and germacrene D accumulation in pyrethrum flowers.
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Plant defensive mimicry based on the aphid alarm pheromone (E)-β-farnesene (EβF) was previously shown to operate in Tanacetum cinerariifolium (Asteraceae) flowers. Germacrene D (GD), is another dominant volatile of T. cinerariifolium flowers and may modulate both defense and pollination. Here, we find that the increase in GD/EβF ratio at later developmental stages is correlated with the tissue distribution in the flower head: the total content of EβF and GD is similar, but GD accumulates comparatively more in the upper disk florets. Naphthol and N, N-dimethyl-p-phenylenediamine dihydrochloride (NADI)-stained purple ducts containing EβF and GD, were observed in the five petal lips of the corolla and two-lobed stigma of disk florets. By contrast in the peduncle, EβF accounts for nearly 80% of total terpenes, compared to 5% for GD. EβF is accumulated inside inner cortex cells and parenchyma cells of the pith in young peduncle. This is followed by the formation of terpene-filled axial secretory cavities parallel to the vascular bundles. In conclusion, the observed developmental and diurnal emissions of different EβF/GD ratios appear to be regulated by their tissue distribution.
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Effects of light-emitting diodes (LEDs) on lipid production of the aerial microalga Coccomyxa sp. KGU-D001 under liquid- and aerial-phase conditions.
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Algal biofuels are a promising alternative to fossil fuels, but their widespread use is hindered by problems with mass production. Light-emitting diodes (LEDs) with specific light wavelengths could be used as an energy source for algal growth and lipid synthesis. In this study, the effects of light source on the biomass and lipid production of the aerial microalga Coccomyxa sp. KGU-D001 were evaluated using LEDs. The integration of two-phase cultures, including growth and lipid production under the stress of nitrate depletion, was assessed for efficient lipid production under liquid- or aerial-phase conditions. Different wavelengths of light (blue, green, and red) were tested under liquid- and aerial-phase conditions. Under aerial-phase culture, the fatty acid contents in biofilm reached 320 mg g DWC-1 with the red LEDs. In view of these findings, we describe a one-step culture method for growth and lipid accumulation in algal biofilm under aerial-phase culture with red LED irradiation. When Coccomyxa biofilm was cultured on wet cotton wool with BBM in a petri dish under the red LED, it was able to grow and accumulate lipids under the aerial-phase condition. Based on the results of this study, a potential method for a continuous biodiesel production system is proposed.
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From hogs to HABs: impacts of industrial farming in the US on nitrogen and phosphorus and greenhouse gas pollution
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Nutrient pollution and greenhouse gas emissions related to crop agriculture and confined animal feeding operations (CAFOs) in the US have changed substantially in recent years, in amounts and forms. This review is intended to provide a broad view of how nutrient inputs-from fertilizer and CAFOs-as well as atmospheric NH3 and greenhouse gas emissions, are changing regionally within the US and how these changes compare with nutrient inputs from human wastewater. Use of commercial nitrogen (N) fertilizer in the US, which now exceeds 12,000,000 metric tonnes (MT) continues to increase, at a rate of 60,000 MT per year, while that of phosphorus (P) has remained nearly constant over the past decade at around 1,800,000 MT. The number of CAFOs in the US has increased nearly 10% since 2012, driven largely by a near 13% increase in hog production. The annualized inventory of cattle, dairy cows, hogs, broiler chickens and turkeys is approximately 8.7 billion, but CAFOs are highly regionally concentrated by animal sector. Country-wide, N applied by fertilizer is about threefold greater than manure N inputs, but for P these inputs are more comparable. Total manure inputs now exceed 4,000,000 MT as N and 1,400,000 MT as P. For both N and P, inputs and proportions vary widely by US region. The waste from hog and dairy operations is mainly held in open lagoons that contribute to NH3 and greenhouse gas (as CH4 and N2O) emissions. Emissions of NH3 from animal waste in 2019 were estimated at > 4,500,000 MT. Emissions of CH4 from manure management increased 66% from 1990 to 2017 (that from dairy increased 134%, cattle 9.6%, hogs 29% and poultry 3%), while those of N2O increased 34% over the same time period (dairy 15%, cattle 46%, hogs 58%, and poultry 14%). Waste from CAFOs contribute substantially to nutrient pollution when spread on fields, often at higher N and P application rates than those of commercial fertilizer. Managing the runoff associated with fertilizer use has improved with best management practices, but reducing the growing waste from CAFO operations is essential if eutrophication and its effects on fresh and marine waters-namely hypoxia and harmful algal blooms (HABs)-are to be reduced.
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Polyps of the jellyfish Aurelia aurita are unaffected by chronic exposure to a combination of pesticides.
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Pesticides are a major contaminant in coastal waters and can cause adverse effects in marine invertebrates such as jellyfish. Most studies have investigated short-term responses of organisms to unrealistically high concentrations of pesticides; however, chronic exposure to persistent low concentrations, which are more likely to occur in the environment, are rarely analyzed. Here, we tested the response of polyps of the Moon jellyfish Aurelia aurita, to environmental concentrations of the herbicide atrazine and the insecticide chlorpyrifos, individually and in combination, over nine weeks. We hypothesized that exposure to individual pesticides would reduce rates of asexual reproduction and alter polyps' metabolite profiles, and that the results would be more severe when polyps were exposed to the combined pesticides. Polyps survived and reproduced (through budding) in all treatments and no differences among treatments were observed. Proton nuclear magnetic resonance (1 H NMR) spectroscopy revealed no difference in profiles of polar metabolites of polyps exposed to the individual or combined pesticides. Our results suggest that A. aurita polyps are unaffected by chronic exposure to atrazine and chlorpyrifos at concentrations recommended as being protective by current Australian water quality guidelines. This article is protected by copyright. All rights reserved.
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Test of transformation mechanism of food waste and its impacts on sulfide and methane production in the sewer system.
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Food waste (FW) management has become an important issue worldwide. Diverting FW into the sewer system is considered promising to tackle the FW issue. However, the transformation of FW in sewers and its impact on the sewer process have not received adequate attention due to the overlooked sewer networks. In this study, a laboratory-scale sewer reactor system was established to investigate the transformation of FW and the production of sulfide and methane under anaerobic conditions. The transformation of FW in the sewer reactor could result in an increase in the substrate level through hydrolyzing and converting biodegradable substances into preferred substrates. Moreover, the generated substrates from the addition of FW were preferable for the metabolism of key microbes in sewer biofilms. As a result, methane production from the sewer reactor could be enhanced from the addition of FW, whereas sulfide production was not affected at a low sulfate concentration. The findings of this study suggest that the diversion of FW may exert an adverse impact on sewers and the environment in terms of greenhouse gas emission. Hence, more research is necessary to clarify the detailed impacts on FW management and wastewater treatment.
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Cuticular pheromones stimulate hygienic behavior in the honey bee (Apis mellifera)
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The health of western honey bee (Apis mellifera) colonies is challenged by the parasitic mite Varroa destructor and the numerous harmful pathogens it vectors. Selective breeding for the naturally occurring social immune trait "hygienic behavior" has emerged as one sustainable approach to reducing the mites' impact on honey bees. To expand our understanding of hygienic triggers and improve hygienic selection tools, we tested the hypothesis that the cuticular compounds (Z)-10-tritriacontene and (Z)-6-pentadecene, previously associated with unhealthy honey bee brood and/or brood targeted for hygiene, are triggers of honey bee hygienic behavior independent of brood health. In support of our hypothesis, application of synthetic (Z)-10-tritriacontene and (Z)-6-pentadecene onto brood and brood cell caps significantly increased hygienic behavior compared to application of similarly structured hydrocarbon controls (Z)-16-dotriacontene and (Z)-7-pentadecene. Furthermore, we demonstrate a significant positive correlation between colony-level hygienic responses to (Z)-10-tritriacontene and the traditional freeze-killed brood assay for selection of hygienic honey bee stocks. These results confirm biological activity of (Z)-6-pentadecene and reveal (Z)-10-tritriacontene as a novel hygiene trigger. They also support development of improved tools for honey bee colony monitoring and hygienic selection, and thus may accelerate development of honey bee stocks with greater resistance to Varroa and associated pathogens.
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Aquaculture in coastal urbanized areas: A comparative review of the challenges posed by Harmful Algal Blooms
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Increasing global population has resulted in increased urbanization of coastal areas across the globe Such an increase generates many challenges for sustainable food production and food security The development of aquaculture has proven to be an extremely good option to ensure food security (uninterrupted supply and good quality of food) by many countries, especially those with urban areas affected by space limitations such as Singapore However, the implementation of aquaculture is not without its challenges and impacts to the environment, with Harmful Algal Blooms (HABs) being one of the major concerns in coastal waters In this review we analyze the development of the aquaculture industry with respect to HABs in Singapore and compare it to similar urban areas such as Hong Kong (SAR China), Salalah (Oman), Cape Town (South Africa), Valencia (Spain), Rotterdam (The Netherlands), Tampa bay (USA), Vancouver (Canada), and Sydney (Australia) Along with HABs, the abovementioned urban areas face different challenges in sustainably increasing their aquaculture production with respect to the economy and geography This review further assesses the different production and monitoring strategies that have been implemented to counter these challenges while sustainably increasing production The ongoing COVID-19 pandemic has affected the world with lockdowns and border closures resulting in logistical difficulties in seafood trade which has further accentuated the dependencies on food import We conclude that the challenges faced by urban areas for sustainable achievement of food security through development of the aquaculture industry can be effectively managed through proper planning, management and collaboration of knowledge/skills on an international level
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Niche theory‐based modeling of assembly processes of viral communities in bats
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Understanding the assembly processes of symbiont communities, including viromes and microbiomes, is important for improving predictions on symbionts’ biogeography and disease ecology. Here, we use phylogenetic, functional, and geographic filters to predict the similarity between symbiont communities, using as a test case the assembly process in viral communities of Mexican bats. We construct generalized linear models to predict viral community similarity, as measured by the Jaccard index, as a function of differences in host phylogeny, host functionality, and spatial co‐occurrence, evaluating the models using the Akaike information criterion. Two model classes are constructed: a “known” model, where virus–host relationships are based only on data reported in Mexico, and a “potential” model, where viral reports of all the Americas are used, but then applied only to bat species that are distributed in Mexico. Although the “known” model shows only weak dependence on any of the filters, the “potential” model highlights the importance of all three filter types—phylogeny, functional traits, and co‐occurrence—in the assemblage of viral communities. The differences between the “known” and “potential” models highlight the utility of modeling at different “scales” so as to compare and contrast known information at one scale to another one, where, for example, virus information associated with bats is much scarcer.
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Linear Dominance Hierarchies in Female Grass Shrimp Palaemon pugio.
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AbstractThe grass shrimp Palaemon pugio is an abundant and ecologically important species in estuarine habitats in the northwest Atlantic and is commonly used as an indicator species for environmental contamination, but little is known about its behavior. We examined aggression and dominance in P. pugio by using experimental arenas and groups of five shrimp that were observed an hour at a time for three days in the laboratory. Female shrimp showed high levels of initial aggression that quickly decreased over time, suggesting the formation of a dominance hierarchy. The dominance hierarchy between groups of females appeared linear, with shrimp at five distinct ranks in most replicates and higher-ranked individuals dominating lower-ranked ones. Dominance was significantly correlated with cheliped size but not body size, suggesting that larger chelipeds in female P. pugio may have evolved as a tool to establish dominance, perhaps to gain access to shelter in salt marshes, seagrass beds, or oyster reefs. Grass shrimp are preyed upon by a wide range of estuarine fish, and females are especially vulnerable; so securing access to shelter may provide a major selective advantage, with the dominance hierarchy evolving to save energy through a long-term reduction in fighting over resources.
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Linear Six-Carbon Sugar Alcohols Induce Lysis of Microcystis aeruginosa NIES-298 Cells
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Cyanobacterial blooms are a global concern due to their adverse effects on water quality and human health. Therefore, we examined the effects of various compounds on Microcystis aeruginosa growth. We found that Microcystis aeruginosa NIES-298 cells were lysed rapidly by linear six-carbon sugar alcohols including mannitol, galactitol, iditol, fucitol, and sorbitol, but not by other sugar alcohols. Microscopic observations revealed that mannitol treatment induced crumpled inner membrane, an increase in periplasmic space, uneven cell surface with outer membrane vesicles, disruption of membrane structures, release of intracellular matter including chlorophylls, and eventual cell lysis in strain NIES-298, which differed from the previously proposed cell death modes. Mannitol metabolism, antioxidant-mediated protection of mannitol-induced cell lysis by, and caspase-3 induction in strain NIES-298 were not observed, suggesting that mannitol may not cause organic matter accumulation, oxidative stress, and programmed cell death in M. aeruginosa. No significant transcriptional expression was induced in strain NIES-298 by mannitol treatment, indicating that cell lysis is not induced through transcriptional responses. Mannitol-induced cell lysis may be specific to strain NIES-298 and target a specific component of strain NIES-298. This study will provide a basis for controlling M. aeruginosa growth specifically by non-toxic substances.
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Identification of CDPK Gene Family in Solanum habrochaites and Its Function Analysis under Stress
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Tomato is an important vegetable crop. In the process of tomato production, it will encounter abiotic stress, such as low temperature, drought, and high salt, and biotic stress, such as pathogen infection, which will seriously affect the yield of tomato. Calcium-dependent protein kinase (CDPK) is a class of major calcium signal receptor which has an important regulatory effect on the perception and decoding of calcium signals. CDPK plays a key role in many aspects of plant growth, such as the elongation of pollen tubes, plant growth, and response to biotic and abiotic stress. While some studies have concentrated on Arabidopsis and pepper, Solanum habrochaites is a wild species relative of cultivated tomato and there is no report on CDPK in Solanum habrochaites to date. Using tomato genomic data, this study identified 33 members of the CDPK gene family. Evolutionary analysis divides family members into four Asian groups, of which the CDPK family members have 11 gene replication pairs. Subcellular location analysis showed that most proteins were predicted to be located in the cytoplasm, and less protein existed on the cell membrane. Not all CDPK family members have a transmembrane domain. Cis regulatory elements relating to light, hormones, and drought stress are overrepresented in the promoter region of the CDPK genes in Solanum habrochaites. The expression levels of each gene under biotic stress and abiotic stress were quantified by qRT-PCR. The results showed that members of the CDPK family in Solanum habrochaites respond to different biotic and abiotic stresses. Among them, the expression of ShCDPK6 and ShCDPK26 genes change significantly. ShCDPK6 and ShCDPK26 genes were silenced using VIGS (virus-induced gene silencing), and the silenced plants illustrated reduced stress resistance to Botrytis cinerea, cold, and drought stress. The results of this study will provide a basis for the in-depth study of the CDPK gene family in Solanum habrochaites, laying the foundation for further analysis of the function of the gene family.
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Spatio-temporal variation and risk assessment of hydrochemical indices in a large diversion project of the Yellow River, northern China, from 2008 to 2017.
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Large-scale, inter-basin water diversion projects have been developed to relieve water scarcity crisis and water pollution problems. Environmental status and ecosystem impacts are largely unknown for the Wanjiazhai Yellow River Diversion Project (YRDP-WJZ), a water body critical in northern China. In the current study, twelve hydrochemical indices (including Mn, Cu, Zn, Hg, Pb, NH3-N, COD-Mn, DO, BOD5, COD, TP, and TN) were collected from 2008 to 2017 based on multiple analytical approaches to understand environmental status and ecological risks. Human health risk and threats to aquatic organisms from heavy metals were assessed. Heavy metals have no regular spatial distribution. Biochemical parameters and nutrients pollute seriously in midstream and downstream, respectively. Hydrochemical indices suggested high levels of pollution in the midstream section. Water quality improved downstream of the Fenhe Reservoir, but total nitrogen and total phosphorus in the downstream section increased in recent years. The Canadian Council of Ministers of the Environment Water Quality Index (CWQI) suggested midstream water quality was poor in general, and 80% of annual calculations had a marginal grade. For aquatic organisms, ecological risks of Cu and Zn were high. For local residents, drinking water was generally safe, but continued monitoring is critical due to ongoing threats to water quality in these areas.
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The power of national acoustic tracking networks to assess the impacts of human activity on marine organisms during the COVID-19 pandemic. (Special Issue: Conservation and ecological impacts of the COVID-19 pandemic.)
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COVID-19 restrictions have led to an unprecedented global hiatus in anthropogenic activities, providing a unique opportunity to assess human impact on biological systems. Here, we describe how a national network of acoustic tracking receivers can be leveraged to assess the effects of human activity on animal movement and space use during such global disruptions. We outline variation in restrictions on human activity across Australian states and describe four mechanisms affecting human interactions with the marine environment: (1) reduction in economy and trade changing shipping traffic;(2) changes in export markets affecting commercial fisheries;(3) alterations in recreational activities;and (4) decline in tourism. We develop a roadmap for the analysis of acoustic tracking data across various scales using Australia's national Integrated Marine Observing System (IMOS) Animal Tracking Facility as a case study. We illustrate the benefit of sustained observing systems and monitoring programs by assessing how a 51-day break in white shark (Carcharodon carcharias) cage-diving tourism due to COVID-19 restrictions affected the behaviour and space use of two resident species. This cessation of tourism activities represents the longest break since cage-diving vessels started day trips in this area in 2007. Long-term monitoring of the local environment reveals that the activity space of yellowtail kingfish (Seriola lalandi) was reduced when cage-diving boats were absent compared to periods following standard tourism operations. However, white shark residency and movements were not affected. Our roadmap is globally applicable and will assist researchers in designing studies to assess how anthropogenic activities can impact animal movement and distributions during regional, short-term through to major, unexpected disruptions like the COVID-19 pandemic.
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Functional Investigation of Plant Growth Promoting Rhizobacterial Communities in Sugarcane
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Plant microbiota are of great importance for host nutrition and health. As a C(4) plant species with a high carbon fixation capacity, sugarcane also associates with beneficial microbes, though mechanisms underlying sugarcane root-associated community development remain unclear. Here, we identify microbes that are specifically enriched around sugarcane roots and report results of functional testing of potentially beneficial microbes propagating with sugarcane plants. First, we analyzed recruitment of microbes through analysis of 16S rDNA enrichment in greenhouse cultured sugarcane seedlings growing in field soil. Then, plant-associated microbes were isolated and assayed for beneficial activity, first in greenhouse experiments, followed by field trials for selected microbial strains. The promising beneficial microbe SRB-109, which quickly colonized both roots and shoots of sugarcane plants, significantly promoted sugarcane growth in field trials, nitrogen and potassium acquisition increasing by 35.68 and 28.35%, respectively. Taken together, this report demonstrates successful identification and utilization of beneficial plant-associated microbes in sugarcane production. Further development might facilitate incorporation of such growth-promoting microbial applications in large-scale sugarcane production, which may not only increase yields but also reduce fertilizer costs and runoff.
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Metagenomic data of microbial in natural empty fruit bunches degradation
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Oil palm empty fruit bunches (OPEFB) are the lignocellulosic complex organic waste material from palm oil mills that is cheap, environmentally friendly, and abundant in Indonesia. Slow degradation of OPEFB becomes a problem for oil palm plantations. OPEFB which has decayed naturally for 6 months, 1 year, and 2 years were obtained from the Oil Palm Plantation, PTPN VIII Cikasungka, Bogor, Indonesia. In this study, fungal and bacterial diversity in naturally decaying OPEFB in plantations was identified using Illumina MiSeq sequencing of the ITS2 for fungal, the V3 region of the 16S rRNA gene, and the V4 region of the 18S rRNA gene for bacterial. Bacterial diversity in decaying OPEFB was dominated by the phylum Planctomycetes (40-60%), whereas most of the fungal sequences taken belonged to Ascomycota (60-90%). Biodiversity profile resulting from metagenomic analysis is useful for increasing knowledge about microbial composition in the natural degradation process of OPEFB. The resulting data can be used to compare the diversity of bacteria at different weathering times and depths. In-depth observation of the diversity of lignin-degrading microbes from the natural decomposition of OPEFB has the potential to discover novel enzymes and ligninolytic activities that are useful for the fast degradation of OPEFB, production of biofuels based on enzymatic technology, and the development of high value-added biomass products.
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Metabolic tradeoffs in tropical and subtropical marine mammals - Unique maintenance and locomotion costs in West Indian manatees and Hawaiian monk seals.
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Unlike the majority of marine mammal species, Hawaiian monk seals (Neomonachus schauinslandi) and West Indian manatees (Trichechus manatus latirostris) reside exclusively in tropical or subtropical waters. Although potentially providing an energetic benefit through reduced maintenance and thermal costs, little is known about the cascading effects that may alter energy expenditure during activity, dive responses, and overall energy budgets for these warm water species. To examine this, we used open-flow respirometry to measure the energy expended during resting and swimming in both species. We found the average resting metabolic rates (RMR) for both the adult monk seal (753.8±26.1 kJ·hr-1, mean±s.e.m) and manatees (887.7±19.5 kJ·hr-1) were lower than predicted for cold water marine mammal species of similar body mass. Despite these relatively low RMRs, both total cost per stroke and total cost of transport (COTTOT) during submerged swimming were similar to predictions for comparably sized marine mammals (adult monk seal: Cost per stroke=5.0±0.2 J·kg-1·stroke-1, COTTOT=1.7±0.1 J·kg-1·m-1; manatees: Cost per stroke=2.0±0.4 J·kg-1·stroke-11, COTTOT=0.87±0.17 J·kg-1·m-1). These lower maintenance costs result in less variability in adjustable metabolic costs that occur during submergence for warm water species. However, these reduced maintenance costs do not appear to confer an advantage in overall energetic costs during activity, potentially limiting the capacity of warm-water species to respond to anthropogenic or environmental threats that require increased energy expenditure.
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A microbotanical and microwear perspective to plant processing activities and foodways at Neolithic Çatalhöyük
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Çatalhöyük is a renowned archaeological site in central Anatolia, best known for its Neolithic occupation dated from 7100 to 6000 cal BC. The site received worldwide attention early on for its large size, well-preserved mudbrick architecture, and elaborate wall paintings. Excavations at the site over almost three decades have unearthed rich archaeobotanical remains and a diverse ground stone assemblage produced by what once was a vibrant farming community. The study presented here adds to our understanding of crops and plant processing at Çatalhöyük by integrating phytoliths and starch analyses on grinding implements found at three domestic contexts attributed to the Middle (6700–6500 cal BC) and Late (6500–6300 cal BC) period of occupation. Our results reveal a rich microbotanical assemblage that testifies the use of a wide range of geophytes and wild seasonal resources previously unknown at the site. Moreover, by comparing results from the microbotanical proxies and microscopic wear patterns on artefacts, we are also able to discern various plant processing practices the analysed artefacts were employed for. In sum, this work further expands our understanding of plants and crop processing activities performed by the inhabitants of Neolithic Çatalhöyük.
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The educational community and its knowledge and perceptions of native and invasive alien species
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Environmental education seeks to foster an appreciation for nature and the impact of humans on it while introducing citizens to scientific thinking. Biological invasions affect different aspects of life on earth and mandate urgent management actions. Education and public awareness are strongly recommended for successful prevention and management of invasive alien species (IAS). This work presents a study on knowledge and perception of the educational community of Argentina about native species and IAS. We designed an on-line semi-structured questionnaire to examine perception of the environment, recognition of native species and IAS and awareness about biological invasions. Educators recognised an important number of biotic components, mostly represented by trees, birds and mammals. Recognition of native species and IAS, and awareness of biological invasions were different between NST (Natural Science Teachers) and non-NST. Respondents had different performances when they were exposed to recognising native species though written names or photographs. Out of 532 respondents, 56% knew what biological invasions are, 21% answered “Maybe” and 23% had never heard about them. We need to foster capacity-building and encourage a two-way communication between educators and scientists, formally and informally, to engage the participation of the whole society in recognition, prevention and management of IAS.
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Please summerize the given abstract to a title
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Diffusion of Volatile Organics and Water in the Epicuticular Waxes of Petunia Petal Epidermal Cells
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Plant cuticles are a mixture of crystalline and amorphous waxes that restrict the exchange of molecules between the plant and the atmosphere. The multicomponent nature of cuticular waxes complicates the study of the relationship between the physical and transport properties. Here, a model cuticle based on the epicuticular waxes of Petunia hybrida flower petals was formulated to test the effect of wax composition on diffusion of water and volatile organic compounds (VOCs). The model cuticle was composed of a n-tetracosane (C24 H50 ), 1-docosanol (C22 H45 OH), and 3-methylbutyl dodecanoate (C17 H34 O2 ), reflecting the relative chain length, functional groups, molecular arrangements, and crystallinity of the natural waxes. Molecular dynamics simulations were performed to obtain diffusion coefficients for compounds moving through waxes of varying composition. Simulated VOC diffusivities of the model system were found to highly correlate with in vtiro measurements in isolated petunia cuticles. VOC diffusivity increased up to 30-fold in completely amorphous waxes, indicating a significant effect of crystallinity on cuticular permeability. The crystallinity of the waxes was highly dependent on the elongation of the lattice length and decrease in gap width between crystalline unit cells. Diffusion of water and higher molecular weight VOCs were significantly affected by alterations in crystalline spacing and lengths, whereas the low molecular weight VOCs were less affected. Comparison of measured diffusion coefficients from atomistic simulations and emissions from petunia flowers indicates that the role of the plant cuticle in the VOC emission network is attributed to the differential control on mass transfer of individual VOCs by controlling the composition, amount, and dynamics of scent emission.
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Oral Immune Priming Treatment Alters Microbiome Composition in the Red Flour Beetle Tribolium castaneum
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It is now well-established that the microbiome is relevant for many of an organism's properties and that its composition reacts dynamically to various conditions. The microbiome interacts with host immunity and can play important roles in the defenses against pathogens. In invertebrates, immune priming, that is, improved survival upon secondary exposure to a previously encountered pathogen, can be dependent upon the presence of the gut microbiome. However, it is currently unknown whether the microbiome changes upon priming treatment. We here addressed this question in a well-established model for immune priming, the red flour beetle Tribolium castaneum exposed to the entomopathogenic bacterium Bacillus thuringiensis (Bt). After priming treatments, the microbiota composition of beetle larvae was assessed by deep sequencing of the V1-V2 region of the bacterial 16S rRNA gene. We compared the effect of two established routes of priming treatments in this system: injection priming with heat-killed Bt and oral priming via ingestion of filtered sterilized bacterial spore culture supernatants. For oral priming, we used several strains of Bt known to vary in their ability to induce priming. Our study revealed changes in microbiome composition following the oral priming treatment with two different strains of Bt, only one of which (Bt tenebrionis, Btt) is known to lead to improved survival. In contrast, injection priming treatment with the same bacterial strain did not result in microbiome changes. Combined with the previous results indicating that oral priming with Btt depends on the larval microbiome, this suggests that certain members of the microbiome could be involved in forming an oral priming response in the red flour beetle.
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Community structure of phototrophic co-cultures from extreme environments
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Cyanobacteria are found in most illuminated environments and are key players in global carbon and nitrogen cycling. Although significant efforts have been made to advance our understanding of this important phylum, still little is known about how members of the cyanobacteria affect and respond to changes in complex biological systems. This lack of knowledge is in part due to the reliance on our ability to maintain pure cultures when determining the metabolism and function of a microorganism. To fill this knowledge-gap, we selected 26 photosynthetic co-cultures from the Culture Collection of Microorganisms from Extreme Environments (CCMEE) for 16S rRNA gene sequencing. We assessed if samples readily available from the CCMEE could contribute valuable insights to advance applied and fundamental science in the areas of global and local carbon and nitrogen cycling, without growing individual members of these co-cultures axenically. Results from this work will aid in determining whether culture depositories in general hold the potential to advance fundamental and applied research. Since maintaining culture depositories is resource intensive, such an assessment will be of great value in guiding future funding decisions.
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Overview of Poultry Management as a Key Factor for Solving Food and Nutritional Security with a Special Focus on Chicken Breeding in East African Countries
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SIMPLE SUMMARY: The poultry sector in most developing countries is largely based on traditional production systems, which are based on indigenous breeds. Beyond economical, nutritional, socio-cultural, and religious functions, the inherent adaptability of indigenous birds to diverse environmental conditions also provides a unique genetic resource critical for addressing the global challenges of food security in this world impacted by climatic change and human population growth. Nevertheless, until recently, the potential of the indigenous chicken remained largely untapped for no strong reason. In this review, we offer an overview of food and nutritional security with a special focus on chicken breeding in East Africa. We highlighted and combined confirming evidence of production performance, phenotypic variability, and genetic diversity of East African indigenous chicken using both morphological and molecular tools. Previous attempts to improve the productivity of indigenous chicken are highlighted, and possible future breeding plans and areas of immediate research are suggested. Considering how indigenous chicken strongly affects the livelihood of the majority of households, and since the poultry sector is likely to be strongly affected by climate change, we recommended that the prospects of chicken breeding in Africa should create a permanent balance between the competing needs of genetic improvement and the genetic diversity of indigenous chickens. ABSTRACT: The focus of this review is to offer an overview of food and nutritional security, to identify associated constraints, and propose possible alternative solutions for improving the East African poultry sub-sector in the pursuit of food security, focusing on chicken breeding. To better understand the prospects of the poultry industry, we highlighted and combined confirming evidence of the phenotypic variability and genetic diversity of East African chicken genetic resources using both morphological and molecular tools, as well as performance traits. Furthermore, this work gives a detailed indication of what would be lost if indigenous chicken populations are left to suffer the ongoing massive genetic erosions due to various factors, not limited to indiscriminate crossbreeding. Previous and recent attempts to improve the productivity of indigenous chicken are highlighted, and possible future breeding plans and areas of immediate research are suggested as well. This review concludes that under the prevailing conditions, the village chicken production system appears to be the most imperious production system that needs to be extensively developed ; however, for the sustainability of the industry, the proposed improvement strategies should create a permanent balance between the competing needs of genetic improvement and the genetic diversity of the indigenous chicken genetic resource.
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The impact of WWTP size and sampling season on the prevalence of antibiotic resistance genes in wastewater and the river system
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There is a growing concern about the fate of antibiotic resistance genes (ARGs) during wastewater treatment and their potential impacts on the receiving water bodies. We hypothesised that the quantity of ARGs in effluents may be related to the size of wastewater treatment plants (WWTPs) and sampling season. To date, only several attempts have been made to investigate the impact of the above factors at the catchment scale. Therefore, the goal of the present study was to explore possible differences in the quantity of ARGs in treated wastewater from small, medium-sized and large WWTPs in the catchment of the Pilica River (9258 km2). The impact of treated wastewater on the concentration of ARGs was also determined along the river continuum from upland to lowland segments to the point of confluence with the Vistula (342 km). Treated effluent was sampled in 17 WWTPs, and river water was sampled in 7 sampling sites in four seasons. The concentrations of blaTEM, tet(A), ermF, sul1 and aac(6')-Ib-cr genes, the integrase gene intI1 and the 16S rRNA gene were analysed by quantitative PCR. The physical and chemical parameters and nutrient concentrations (23 various parameters) in the analysed samples were determined. The highest absolute concentrations of the studied genes were noted in effluent samples from small WWTPs (p < 0.01). The concentration of ARGs (gene copies/mL) peaked in winter and spring samples (p < 0.04). The results of statistical analyses indicate that in small WWTPs, the absolute concentration of ARGs can be predicted based on the biochemical oxygen demand, in routine water analyses. However, none of the studied parameters supported predictions of ARG abundance in medium-sized and large WWTPs or in river water.
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Agroecology landscapes
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CONTEXT: Agroecology combines agronomic and ecological concepts. It relies on the enhancement of biodiversity and related ecosystem services to support agricultural production. It is dependent on biological interactions for the design and management of agricultural systems in agricultural landscapes. OBJECTIVES: We review the role of landscape ecology to understand and promote biodiversity, pest regulation and crop pollination for the designing of “agroecology landscapes”. We illustrate the use of landscape ecological methods for supporting agroforestry systems as an example of agroecological development, and we propose pathways to implement agroecology at landscape scale. METHODS: The state of the art of how landscape ecology contributes to agroecology development is summarized based on a literature review. RESULTS: Agroecology requires thinking beyond the field scale to consider the positioning, quality and connectivity of fields and semi-natural habitats at larger spatial scales. The spatial and temporal organisation of semi-natural elements and the crop mosaic interact. Understanding this interaction is the pre-requisite for promoting patterns and mechanisms that foster biodiversity and ecosystem service provision. Promoting agroecological practices beyond individual farm borders can be rooted in a bottom-up approach from agroecological lighthouse farms to farm networks to amplify agroecology adoption at the landscape scale. CONCLUSIONS: Achieving agricultural landscapes composed of fields and farms following agroecological management requires understanding of biodiversity patterns, biological interactions and mechanisms that determine and boost ecosystem functioning to improve services at landscape scale, involving farmers in a bottom-up and context-specific approach.
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A review of vulnerabilities in worldwide small-scale fisheries
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Addressing vulnerabilities in small-scale fisheries (SSF) has been gaining increasing attention due to their role in securing livelihoods of millions of people in the world, even though when they are subject to susceptible scenarios. We reviewed the literature with the aim of shedding light on the distribution, coping strategies, and common drivers of vulnerabilities in worldwide SSF. Seventy-eight studied cases worldwide, 21 drivers of vulnerability, and 8 coping strategies were identified. Natural and human-induced declining fish catches was the most common driver of vulnerability and disobedience of fishing rules the most common coping strategy. From the three dimensions of vulnerability, exposure (presence of vulnerable scenarios) was the highest (50%), followed by sensitivity (susceptibility to vulnerable scenarios) (29%) and adaptive capacity (ability to cope with vulnerable scenarios) (21%). The literature review highlights the need for adopting a context-specific threefold (resource management and conservation, livelihoods development, and restructured governance) approach to SSF management.
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### Instruction:
Please summerize the given abstract to a title
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Classification of Texas Reservoirs in Relation to Limnology and Fish Community Associations
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I used cluster analysis to examine associations among 20 fish species to develop a classification scheme for 132 large Texas reservoirs. Five major groups of reservoirs were identified by cluster analysis based on species associations. Of 29 reservoirs surveyed previously, 76% were classified into the same species associations from one survey to the next. When 19 environmental variables were used in canonical correlation analysis of the five reservoir groups, I found a general east‐to‐west separation of species associations by water quality and a northwest‐to‐southeast separation by surface elevation and growing season. A discriminant functions model based on a reduced set of nine environmental variables had an unbiased error rate of 18% for predicting the species association in unclassified reservoirs. A stratified sampling scheme based on the classification model decreased the variance of statewide electrofishing catch per effort up to 43% for bluegill Lepomis macrochirus and 23% for largemouth bass Micropterus salmoides over a simple random sample of reservoirs.
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Standard metabolic rate does not associate with age-at-maturity genotype in juvenile Atlantic salmon.
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Atlantic salmon (Salmo salar) is a species with diverse life-history strategies, to which the timing of maturation contributes considerably. Recently, the genome region including the gene vgll3 has gained attention as a locus with a large effect on Atlantic salmon maturation timing, and recent studies on the vgll3 locus in salmon have indicated that its effect might be mediated through body condition and accumulation of adipose tissue. However, the cellular and physiological pathways leading from vgll3 genotype to phenotype are still unknown. Standard metabolic rate is a potentially important trait for resource acquisition and assimilation and we hypothesized that this trait, being a proxy for the maintenance energy expenditure of an individual, could be an important link in the pathway from vgll3 genotype to maturation timing phenotype. As a first step to studying links between vgll3 and the metabolic phenotype of Atlantic salmon, we measured the standard metabolic rate of 150 first-year Atlantic salmon juveniles of both sexes, originating from 14 different families with either late-maturing or early-maturing vgll3 genotypes. No significant difference in mass-adjusted standard metabolic rate was detected between individuals with different vgll3 genotypes, indicating that juvenile salmon of different vgll3 genotypes have similar maintenance energy requirements in the experimental conditions used and that the effects of vgll3 on body condition and maturation are not strongly related to maintenance energy expenditure in either sex at this life stage.
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Black flies (Diptera: Simuliidae) of central and northeastern Washington, United States of America, with cytogenetic emphasis on the Simulium arcticum complex
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We made 28 collections of black flies (Diptera: Simuliidae) at 24 locations in central and northeastern Washington state, United States of America, and identified 10 species in three genera, including Simulium arcticum Malloch, which we studied cytogenetically. We analysed 745 larvae of S. arcticum cytogenetically from nine of the 11 sites where it occurred;five sites had small sample sizes. For the collections with large sample sizes, the distribution of S. arcticum may have a geographic pattern. Larvae in western tributaries of the Columbia River have the sex-linked IIL-2 inversion and heterozygotes for the IS-1 autosomal polymorphism in abundance but lack the IIL-21 sex-linked inversion, whereas larvae in eastern tributaries of the Columbia River possess the IIL-21 inversion but lack IIL-2 and the IS-1 inversions. A cytotype new to science, S. arcticum IIL-81, occurs in some larvae at the Methow River in the eastern Cascades region. All females, regardless of location, possess enhanced (Ce Ce) centromere bands in their IIL-chromosomes, whereas all males possess the enhanced, thin (Ce Ct) centromere band dimorphism. The Methow River had nine types of chromosomally identified males in 2019 and eight types in 2020.
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### Instruction:
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Indicators of full value feeding rations for dairy cows.
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This article presents the results of the level of feeding and the health status of dairy cows in a commercial dairy farm on the content of the main components in milk (fat, protein, urea). The aim of the research was to study the milk productivity and composition of milk of cows, to analyze the level of feeding and the content of basic nutrients in the diet of the farm. The farm breeds purebred Holstein cattle with a high genetic potential for productivity. The milking herd was formed in 2009 on the basis of 600 heads of Holstein-Friesian heifers imported from Hungary, as well as 65 heads of Holsteinized heifers of Ukrainian selection from Ukraine in 2015. Today the livestock numbers about 1,500 head of cattle, of which there are about 900 breeders. On the territory of the farm there are: 3 cowsheds for keeping cows, an insemination room, a milking parlor with a parallel installation of the Delaval company, in which 48 cows are milked for one milking, the ABK, where the manager's office, livestock technician, accounting is located, and a mini-hotel with dining room and lounges. Dairy bases are equipped with auto-drinkers, ventilation, plumbing, electric lighting, manure removal mechanisms, and a milking installation. The object of the research was Holstein cows in the amount of 483 heads of Aina Dairy Farm LLP. The studies were carried out according to generally accepted zootechnical methods using modern equipment for conducting analyzes and interstate and state standards. The research results showed that the milk productivity of cows averaged 19.5 kg per day, the fat content 4.3%, the protein 3.9%, the number of somatic cells 230.5 thousand units / ml, urea 45.3 mg / 100 ml respectively. Analyzing the level of urea in milk can suggest a high crude protein content in the diet. The ration of feeding dairy cows on the farm is concentrate-silage-haylage and there is an excess of dry matter by 16.2%, crude protein by 9.8%, starch by 29.4%, respectively.
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Chapter 1 Allelochemical Properties or the Raison D'être of Alkaloids
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This chapter provides evidence that alkaloids are not waste products or functionless molecules as formerly assumed, but rather defense compounds employed by plants for survival against herbivores and against microorganisms and competing plants. These molecules were developed during evolution through natural selection in that they fit many important molecular targets, often receptors, of cells, which are seen in molecules that mimic endogenous neurotransmitters. The chapter discusses that microorganisms and herbivores rely on plants as a food source. Since both have survived, there must be mechanisms of adaptations toward the defensive chemistry of plants. Many herbivores have evolved strategies to avoid the extremely toxic plants and prefer the less toxic ones. Many herbivores have potent mechanisms to detoxify xenobiotics, which allow the exploitation of at least the less toxic plants. In insects, many specialists evolved that are adapted to the defense chemicals of their host plant, in that they accumulate these compounds and exploit them for their own defense. Alkaloids function as defense molecules against insect predators in the examples studied, and this is further support for the hypothesis that the same compound also serves for chemical defense in the host plant. It needs more experimental data to understand fully the intricate interconnections between plants, their alkaloids, and herbivores, microorganisms, and other plants.
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Ten Ostreobium (Ulvophyceae) strains from Great Barrier Reef corals as a resource for algal endolith biology and genomics
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Ostreobium is a genus of siphonous green algae that lives as an endolith in carbonate substrates under extremely limited light conditions and has recently been gaining attention due to its roles in reef carbonate budgets and its association with reef corals. Knowledge about this genus remains fairly limited due to the scarcity of strains available for physiological studies. Here, we report on 10 strains of Ostreobium isolated from coral skeletons from the Great Barrier Reef. Phenotypic diversity showed differences in the gross morphology and in few structures. Phylogenetic analyses of the tufA and rbcL put the strains in the context of the lineages identified previously through environmental sequencing. The chloroplast genomes of our strains are all around 80k bp in length and show that genome structure is highly conserved, with only a few insertions (some containing putative protein-coding genes) differing between the strains. The addition of these strains from the Great Barrier Reef to our toolkit will help develop Ostreobium as a model species for endolithic growth, low-light photosynthesis and coral-algal associations.
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Azolla incorporation under flooding reduces grain cadmium accumulation by decreasing soil redox potential.
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Cadmium (Cd) presents severe risks to human health and environments. The present study proposed a green option to reduce bioavailable Cd. Rice pot experiments were conducted under continuous flooding with three treatments (T1: intercropping azolla with rice; T2: incorporating azolla into soil before rice transplantation; CK: no azolla). The results showed that azolla incorporation reduced soluble Cd by 37% compared with the CK treatment, which may be explained by the decreased soil redox potential (Eh) (r = 0.867, P < 0.01). The higher relative abundance of Methylobacter observed in azolla incorporation treatment may account for dissolved organic carbon increase (r = 0.694; P < 0.05), and hence decreased the Cd availability for rice. Azolla incorporation increased the abundance of Nitrospira, indicating the potentially prominent role of nitrogen mineralization in increasing rice yields. Further, lower soluble Cd decreased the expression of OsNramp5, but increased OsHMA3 levels in rice roots, which decreased Cd accumulation in grains. Through these effects, azolla incorporation decreased Cd concentrations in rice grains by 80.3% and increased the production by 13.4%. The negligible amount of Cd absorbed by azolla would not increase the risk of long-term application. Thus, intercropping azolla with early rice and incorporating azolla into soil before late rice transplantation can contribute to safe production at large scales of double rice cultivation.
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Deciphering the rhizobacterial assemblages under the influence of genetically engineered maize carrying mcry genes
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Genetically engineered (GE) maize has been thoroughly studied regarding its agro-environmental impact; however, its concerns for the soil environment remain. This work was aimed to decode rhizosphere microbe interactions and potential ecological hazards associated with GE maize. Rhizobacterial communities of field grown transgenic insect-resistant 2A5 maize carrying mcry1Ab and mcry2Ab genes were compared with control Z58 using PacBio sequencing platform. Also full-length 16S rDNA gene sequencing was used to verify the partial (V3-V4) sequencing results obtained in 2017. Measures of α-diversity displayed transgenic 2A5 to be significantly lower in species richness at the flowering stage; however, diversity remained undisturbed. ß-diversity was least affected by genetic modifications where similar community profiles were shared by transgenic 2A5 and control Z58. In addition, root exudation patterns were found to drive variations in bacterial assemblages based on developmental stages. For example, genus Massilia successfully colonized the rhizosphere at jointing stage, while Mucilaginobacter showed higher relative abundance in flowering stages of both 2A5 and Z58. These members are known to possess attributes related to plant growth. The impact of dual-transgene insertion on nifH gene abundance was also analyzed where no apparent significant difference in nifH gene copy number was observed. Our results confirmed that full-length 16S rDNA sequencing was sufficient to provide higher taxonomic resolution. Also, results of our 2-year field trials confirmed that there is no significant impact of mcry gene integration on belowground biomasses. Therefore, GE insect-resistant 2A5 maize carrying mcry1Ab and mcry2Ab genes can continue to benefit human populations by increasing crop productivity. In future, further research needs to be catalyzed to analyze the impact of Bt-insertion on microbial community structure across the years for ecosystem sustainability.
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A method for assessing sustainability, with beef production as an example.
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A comprehensive approach to decisions about the use of land and other world resources, taking full account of biological and other scientific information, is crucial for good decisions to be made now and in future. The sustainability of systems for producing food and other products is sometimes assessed using too narrow a range of component factors. A production system might be unsustainable because of adverse effects on a wide range of aspects of human welfare, animal welfare, or the environment. All factors should be included in sustainability evaluation, otherwise products or actions might be avoided without adequate consideration of key factors or of the diversity of production systems. A scoring method that is based on scientific information and potentially of general relevance is presented here, using beef production as a example with a review of each of its sustainability components. This includes an overall combined score and specific factors that make the system unacceptable for some consumers. The results show that, in this example, the sustainability of the best systems is very much better than that of the worst systems. By taking account of scores for a wide range of components of sustainability in comparing beef-production systems, better quality policies about beef use can be formulated than when statements referring only to one system are considered. The least sustainable beef-production systems are extensive grazing that causes land degradation and the use of feedlots or indoor housing with grain feeding. Semi-intensive silvopastoral systems are the most sustainable beef-production systems, and well-managed pasture-fed beef from areas where crop production is uneconomic is also sustainable. This simple, scientifically based scoring system could be modified to use positive as well as negative scores and is of value for policy makers, researchers, producers, organisations aiming to improve sustainability, and the general public.
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Long-term leaf C:N ratio change under elevated CO2 and nitrogen deposition in China: Evidence from observations and process-based modeling.
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Climate change, elevating atmosphere CO2 (eCO2) and increased nitrogen deposition (iNDEP) are altering the biogeochemical interactions between plants, microbes and soils, which further modify plant leaf carbon‑nitrogen (C:N) stoichiometry and their carbon assimilation capability. Many field experiments have observed large sensitivity of leaf C:N ratio to eCO2 and iNDEP. However, the large-scale pattern of this sensitivity is still unclear, because eCO2 and iNDEP drive leaf C:N ratio toward opposite directions, which are further compounded by the complex processes of nitrogen acquisition and plant-and-microbial nitrogen competition. Here, we attempt to map the leaf C:N ratio spatial variation in the past 5 decades in China with a combination of data-driven model and process-based modeling. These two approaches showed consistent results. Over different regions, we found that leaf C:N ratio had significant but uneven changes between 2 time periods (1960-1989 and 1990-2015): a 5% ± 8% increase for temperate grasslands in northern China, a 3% ± 6% increase for boreal grasslands in western China, and by contrast, a 7% ± 6% decrease for temperate forests in southern China, and a 3% ± 5% decrease for boreal forests in northeastern China. Additionally, the structural equation models indicated that the leaf C:N change was sensitive to ΔNDEP, ΔCO2 and ΔMAT rather than ΔMAP and ecosystem types. Process-based modeling suggested that iNDEP was the main source of soil mineral nitrogen change, dominating leaf C:N ratio change in most areas in China, while eCO2 led to leaf C:N ratio increase in low iNDEP area. This study also indicates that the long-term leaf C:N ratio acclimation was dominated by climate constraint, especially temperature, but was constrained by soil N availability over decade scale.
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Nutrient-supplying ocean currents modulate coral bleaching susceptibility.
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With predictions that mass coral bleaching will occur annually within this century, conservation efforts must focus their limited resources based on an accurate understanding of the drivers of bleaching. Here, we provide spatial and temporal evidence that excess nutrients exacerbate the detrimental effects of heat stress to spark mass coral bleaching in the Red Sea. Exploiting this region's unique oceanographic regime, where nutrients and heat stress vary independently, we demonstrate that the world's third largest coral reef system historically suffered from severe mass bleaching only when exposed to both unusually high temperature and nutrients. Incorporating nutrient-supplying ocean currents and their variability into coral bleaching forecasts will be critical for effectively guiding efforts to safeguard the reefs most likely to persist in the Anthropocene.
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Rhinergasilus unguilongus n. sp. (Copepoda: Ergasilidae): A Gill Parasite of the Freshwater Fish Prochilodus lineatus (Valenciennes, 1837) (Actinopterygii: Prochilodontidae) from the Neotropical Region, Brazil
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PURPOSE: To describe, based on morphological features, a new copepod species of Rhinergasilus, Rhinergasilus unguilongus n. sp., collected from gills of the Streaked prochilod, Prochilodus lineatus (Valenciennes, 1837), sampled in the Veados and Paranapanema Rivers, two tributaries of the Jurumirim Reservoir (Upper Paranapanema River, Paraná River Basin), São Paulo State, Brazil. METHODS: Fish were collected using multi-panel gill nets. The gills of each fish were washed and examined for copepods using a stereo microscope. The copepods found were stored in 70% ethanol, cleared in lactic acid, and mounted in Hoyer's medium. Drawings were made with the aid of a microscope equipped with a drawing tube. RESULTS: The new copepod species can be distinguished from its two congeners, Rhinergasilus piranhus (type-species) Boeger et Thatcher, 1988 and Rhinergasilus digitus Narciso, Brandão, Perbiche-Neves et Silva, 2020, due to its extremely long antennary claw (etymology of the species), being longer than the other antennary segments; third leg lacking any interpodal plate; and third endopodal segment of third leg lacking a distal spine. CONCLUSIONS: Based on the morphological differences, we erected a new species of Rhinergasilus. The new copepod represents the second report of a Rhinergasilus species parasitizing a fish from the Jurumirim Reservoir. It also represents the first report of this genus in P. lineatus.
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Multifractal dimensions of soil particle size distribution reveal the erodibility and fertility of alpine grassland soils in the Northern Tibet Plateau
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Climate change and human activities have seriously degraded alpine grassland, potentially affecting soil particle size distribution (PSD) and further influencing the nutrient levels and erodibility of soil. Predicting the fertility and erodibility of alpine soil using multifractal dimensions of soil PSD could be used to enhance the management and restoration of degraded alpine grasslands. In the present study, we evaluated three types of alpine grasslands: alpine meadow (AM), alpine steppe (AS), and alpine desert steppe (ADS). Fencing and grazing management measures were conducted at sites containing each grassland type. Then, we analyzed the PSDs, erodibility, and other properties of soil in the 0-20 cm soil layer. Multifractal characterization of soil PSD was calculated using the fractal scale theory. The findings showed that grassland type significantly impacted soil nutrients and the multifractal dimensions of soil PSDs, whereas management measures affected soil erodibility significantly. The proportion of finer particles decreased as follows: AM > AS > ADS. Compared to grazing, fencing enhanced clay content and reduced the proportion of coarser particles under all three grassland types. AM had higher organic carbon and nitrogen levels than AS and ADS. Multifractal dimensions were highest for AM, with ADS having higher erodibility than AM and AS. Multifractal dimensions (except for correlation dimension) also had significantly positive relationships with soil organic carbon and available nutrient content and soil erodibility, but had significantly negative correlations with soil pH, bulk density, and electrical conductivity. Thus, the multifractal dimensions of soil PSDs could be used to characterize the erodibility and fertility characteristics of soil in alpine regions, providing a reference for assessing vegetation restoration measures in the Northern Tibet Plateau.
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### Instruction:
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Sensitivity Analysis of Soil Parameters in Crop Model Supported with High-Throughput Computing
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Uncertainty of input parameters in crop models and high costs of their experimental evaluation provide an exciting opportunity for sensitivity analysis, which allows identifying the most significant parameters for different crops. In this research, we perform a sensitivity analysis of soil parameters which play an essential role in plant growth for the MONICA agro-ecosystem model. We utilize Sobol’ sensitivity indices to estimate the importance of main soil parameters for several crop cultures (soybeans, sugar beet and spring barley). High-throughput computing allows us to speed up the computations by more than thirty times and increase the number of sampling points significantly. We identify soil indicators that play an essential role in crop yield productivity and show that their influence is the highest in the topsoil layer.
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Slow improvement to the archiving quality of open datasets shared by researchers in ecology and evolution.
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Many leading journals in ecology and evolution now mandate open data upon publication. Yet, there is very little oversight to ensure the completeness and reusability of archived datasets, and we currently have a poor understanding of the factors associated with high-quality data sharing. We assessed 362 open datasets linked to first- or senior-authored papers published by 100 principal investigators (PIs) in the fields of ecology and evolution over a period of 7 years to identify predictors of data completeness and reusability (data archiving quality). Datasets scored low on these metrics: 56.4% were complete and 45.9% were reusable. Data reusability, but not completeness, was slightly higher for more recently archived datasets and PIs with less seniority. Journal open data policy, PI gender and PI corresponding author status were unrelated to data archiving quality. However, PI identity explained a large proportion of the variance in data completeness (27.8%) and reusability (22.0%), indicating consistent inter-individual differences in data sharing practices by PIs across time and contexts. Several PIs consistently shared data of either high or low archiving quality, but most PIs were inconsistent in how well they shared. One explanation for the high intra-individual variation we observed is that PIs often conduct research through students and postdoctoral researchers, who may be responsible for the data collection, curation and archiving. Levels of data literacy vary among trainees and PIs may not regularly perform quality control over archived files. Our findings suggest that research data management training and culture within a PI's group are likely to be more important determinants of data archiving quality than other factors such as a journal's open data policy. Greater incentives and training for individual researchers at all career stages could improve data sharing practices and enhance data transparency and reusability.
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A new species, Henneguya lacustris n. sp. (Cnidaria: Myxosporea), infecting the gills of Astyanax lacustris from Brazil
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The present study describes Henneguya lacustris n. sp. parasitizing Astyanax lacustris (Lütken 1875), from the Tietê River, State of São Paulo, Brazil, through morphological and molecular analysis. Myxospores of the parasites were found in the gills of A. lacustris with 13% prevalence of infection. The myxospores were oval and presented as measures (mean ± standard deviation): total length 18.3 ± 2.2 µm, body length 10.4 ± 1.6 µm, body width 4.9 ± 0.9 µm, tail length 7.2 ± 2.5 µm. The polar capsule was 4.8 ± 0.3 µm long and 1.5 ± 0.2 µm wide. The polar tubules, present inside the polar capsules, had 6 to 7 turns. The ultrastructural analysis allowed the observation of the asynchronous development of the myxospores. Phylogenetic analysis showed H. lacustris n. sp. as a sister species of H. chydadea Barassa and Cordeiro 2003 in a subclade formed by species that parasitize the gills of Characiform fish from Brazil. Using molecular and morphological characterization, this parasite was identified as a new species of the genus Henneguya Thélohan 1892.
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The bat fauna of Tambito, Colombia
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This paper summarizes a first account of the bat fauna in the middle elevations of the Tambito Nature Reserve in the Colombian Chocó. A month-long survey using mist netting found 13 genera comprising at least 26 species. As expected from mist net bias, virtually all the bats captured were understory phyllostomids, with few exceptions. Nonetheless, high ecological diversity was confirmed with frugivorous, nectarivorous, insectivorous and sanguivorous guilds represented. Estimates using extrapolation place the real understory diversity somewhere above 30 species, making this a key site for conservation of bats in general, and the genera Sturnira, Platyrrhinus, and Vampyressa, in particular.
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### Instruction:
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### Response:
Efficiency of feed utilization in young Nellore animals of different genders/ Eficiência na utilização de alimentos em animais jovens da raça Nelore de diferentes gêneros
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In study of more efficient animals for food utilization, it is of great importance to know differences between genders. There are differences between male and female cattle in growing and body composition, mainly those related to the action of sex hormones. This study aimed to evaluate the sex effect on feed efficiency traits in young Nellore animals. Individual feed intake data from eight tests, performed from 2005 to 2012 at Centro APTA Bovinos de Corte-Instituto de Zootecnia-Sertãozinho-SP were utilized. The tests began after weaning, when the animals had, on average, 286 days of age and 229 kg of body weight. The tests duration ranged from 56 to 112 days, depending on the year. Traits analyzed were final body weight (FBW), dry matter intake (DMI), average daily gain (ADG), feed conversion ratio (FCR), feed efficiency ratio (FER), residual feed intake (RFI) and Kleiber ratio (KR). Data were analyzed using the MIXED procedure of SAS. The model included the fixed effect age at the test beginning as linear covariate and the random effects: sex, facilities and year. Least square means were calculated and compared by t test. Males had greater FBW than females, what was expected, due to the action of male hormones which benefits the muscle deposition. Greater means of ADG and DMI were also detected for males, when compared to females, because heavier animals have higher gains and
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