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### Instruction: Please summerize the given abstract to a title ### Response: Influence of pesticides and abiotic conditions on biochemical biomarkers in Aegla aff. longirostri (crustacea, anomura): Implications for conservation. ### Response:	Freshwater ecosystems are constantly threatened by the advance of agricultural activities. Abiotic variables (such as temperature, ammonia, and nitrite) and contaminants (e.g. pesticides) can potentially interact, increasing metabolism and the absorption of toxic substances, which can alter the ability of organisms to establish adequate stress responses. This study aimed to verify which pesticides were most frequently found and in the greatest quantities in low-order streams, and whether the combination of these pesticides with the abiotic variables altered the biological metabolism of aeglids. These freshwater crustaceans are important shredders that inhabit low-order streams and are sensitive to disturbances and/or abrupt environmental variations. The animals were exposed in situ in four streams (reference site and sites 1, 2, and 3). The reference site is a preserved stream with no apparent anthropogenic interference where aeglids still occur, while the other sites no longer exhibit populations of these animals and are influenced by agricultural activities. The exposure was performed bimonthly from November 2017 to September 2018 and lasted 96 h. Measured abiotic data and water samples were collected through all days of exposure. The analyzed biochemical parameters were acetylcholinesterase activity in muscle; and glutathione S-transferase, lipid peroxidation, protein carbonylation, non-protein thiols, antioxidant capacity against peroxides, and reactive oxygen species (ROS) in muscle, gills, and hepatopancreas. We found 24 active principles of pesticides, the most frequently being clomazone, atrazine, and propoxur. Bentazone was present at the highest amounts. The parameters evaluated in this study, including biochemical biomarkers and abiotic factors measured from the water, provided a separation of the months as a function of environmental conditions. There was a difference in activity and biomarker levels throughout the year within the same site and in some months between sites. The greater concentration or variety of pesticides associated with extreme abiotic (very high temperatures) data generated increased oxidative stress, with high levels of protein damage and considerable lipid damage in all tissues, as well as elevation in ROS, even with high levels of antioxidant capacity and non-protein thiols. With these data, we intend to warn about the risks of exposure to these environmental conditions by trying to contribute to the preservation of limnic fauna, especially aeglid crabs, because most species are under some degree of threat.
### Instruction: Please summerize the given abstract to a title ### Response: Front-like expansion and arrest of programmed cell death in brown banana spots. ### Response:	The spot patterns on bananas are a striking case of biological pattern formation and-as a qualitative ripeness indicator-linked to 50 million tons of wasted food per year. Ripening bananas develop these senescent spots as phenolic compounds are enzymatically oxidized and cellular integrity is lost. We characterize the dynamics of the spot expansion and their nucleation rates based on time-lapse movies. Spots nucleate for about 2 days yielding a typical density of 8 spots/cm2. The expansion is initially diffusion controlled and the effective diffusion coefficient decreases with nucleation time from 1.3 to 0.4 mm2d-1. During and after expansion, the browning fronts maintain a steep and constant intensity gradient. We quantitatively reproduce these features by a reaction-diffusion model that considers the local oxygen concentration and browning degree of the peel. All model parameters are based on measurements and front stalling is explained by decreasing oxygen levels in the nucleation sites.
### Instruction: Please summerize the given abstract to a title ### Response: Concentration addition and independent action assessments of the binary mixtures of four toxicants on zebra mussel (Dreissena polymorpha) mortality. ### Response:	Researchers most often focus on individual toxicants when identifying effective chemical control agents for aquatic invasive species; however, toxicant mixtures may elicit synergistic effects. Synergistic effects may decrease required concentrations and shorten exposure durations for treatments. We investigated four toxicants (EarthTec QZ, Clam-Trol CT-2, niclosamide, and potassium chloride) that have been considered to control invasive zebra mussels (Dreissena polymorpha Pallas, 1771). We determined the toxicity of binary mixtures for five different mixture ratios to adult mussels. We compared our observations to predictions made with concentration addition and independent action paradigms, as based on the dose-response relationships of each individual toxicant. We calculated the model deviation ratio for each combination at the LC50 and LC90 and identified three possible interactions: synergy, antagonism, and additivity. We found that mixtures of niclosamide and Clam-Trol CT-2 were the most synergistic while mixtures that included potassium chloride were largely additive to antagonistic. The use of synergistic combinations has potential to decrease the overall volume and concentration of individual toxicants required for dreissenid mussel treatments, thereby decreasing cost.
### Instruction: Please summerize the given abstract to a title ### Response: DspA/E-Triggered Non-Host Resistance against E. amylovora Depends on the Arabidopsis GLYCOLATE OXIDASE 2 Gene ### Response:	DspA/E is a type three effector injected by the pathogenic bacterium Erwinia amylovora inside plant cells. In non-host Arabidopsis thaliana, DspA/E inhibits seed germination, root growth, de novo protein synthesis and triggers localized cell death. To better understand the mechanisms involved, we performed EMS mutagenesis on a transgenic line, 13-1-2, containing an inducible dspA/E gene. We identified three suppressor mutants, two of which belonged to the same complementation group. Both were resistant to the toxic effects of DspA/E. Metabolome analysis showed that the 13-1-2 line was depleted in metabolites of the TCA cycle and accumulated metabolites associated with cell death and defense. TCA cycle and cell-death associated metabolite levels were respectively increased and reduced in both suppressor mutants compared to the 13-1-2 line. Whole genome sequencing indicated that both suppressor mutants displayed missense mutations in conserved residues of Glycolate oxidase 2 (GOX2), a photorespiratory enzyme that we confirmed to be localized in the peroxisome. Leaf GOX activity increased in leaves infected with E. amylovora in a DspA/E-dependent manner. Moreover, the gox2-2 KO mutant was more sensitive to E. amylovora infection and displayed reduced JA-signaling. Our results point to a role for glycolate oxidase in type II non-host resistance and to the importance of central metabolic functions in controlling growth/defense balance.
### Instruction: Please summerize the given abstract to a title ### Response: The dispersal between Amazonia and Atlantic Forest during the Early Neogene revealed by the biogeography of the treefrog tribe Sphaenorhynchini (Anura, Hylidae) ### Response:	The Amazonia and the Atlantic Forest, separated by the diagonal of open formations, are two ecoregions that comprise the most diverse tropical forests in the world. The Sphaenorhynchini tribe is among the few tribes of anurans that occur in both rainforests, and their historical biogeographic have never been proposed. In this study, we infer a dated phylogeny for the species of the Sphaenorhynchini and we reconstructed the biogeographic history describing the diversification chronology, and possible patterns of dispersion and vicariance, providing information about how orogeny, forest dynamics and allopatric speciation affected their evolution in South America. We provided a dated phylogeny and biogeography study for the Sphaenorhynchini tribe using mitochondrial and nuclear genes. We analyzed 41 samples to estimate the ancestral areas using biogeographical analysis based on the estimated divergence times and the current geographical ranges of the species of Sphaenorhynchini. We recovered three characteristic clades that we recognize as groups of species (S. lacteus, S. planicola, and S. platycephalus groups), with S. carneus and G. pauloalvini being the sister taxa of all other species from the tribe. We found that the diversification of the tribe lineages coincided with the main climatic and geological factors that shaped the Neotropical landscape during the Cenozoic. The most recent common ancestor of the Sphaenorhynchini species emerged in the North of the Atlantic Forest and migrated to the Amazonia in different dispersion events that occurred during the connections between these ecoregions. This is the first large-scale study to include an almost complete calibrated phylogeny of Sphaenorhynchini, presenting important information about the evolution and diversification of the tribe. Overall, we suggest that biogeographic historical of Sphaenorhynchini have resulted from a combination of repeated range expansion and contraction cycles concurrent with climate fluctuations and dispersal events between the Atlantic Forest and Amazonia.
### Instruction: Please summerize the given abstract to a title ### Response: Endophytes: the novel sources for plant terpenoid biosynthesis ### Response:	Terpenoids are natural compounds predominantly present in plants. They have many pharmaceutical and/or nutritional functions, and have been widely applied in medical, food, and cosmetics industries. Recently, terpenoids have been used in the clinical treatment of COVID-19 due to the good antiviral activities. The increasing demand for terpenoids in international markets poses a serious threat to many plant species. For environmentally sustainable development, microbial cell factories have been utilized as the promising platform to produce terpenoids. Nevertheless, the bioproduction of most terpenoids cannot meet commercial requirements due to the low cost-benefit ratio until now. The biosynthetic potential of endophytes has gained attention in recent decades owing to the continual discovery of endophytes capable of synthesizing plant bioactive compounds. Accordingly, endophytes could be alternative sources of terpenoid-producing strains or terpenoid synthetic genes. In this review, we summarized the research progress describing the main and supporting roles of endophytes in terpenoid biosynthesis and biotransformation, and discussed the current problems and challenges which may prevent the further exploitation. This review will improve our understanding of endophyte resources for terpenoid production in industry in the future. The four main research interests on endophytes for terpenoid production. A: Isolation of terpenoid-producing endophytes; B: The heterologous expression of endophyte-derived terpenoid synthetic genes; C: Endophytes promoting their hosts' terpenoid production. The blue dashed arrows indicate signal transduction; D: Biotransformation of terpenoids by endophytes or their enzymes. Key pointsâ¢ The mechanisms employed by endophytes in terpenoid synthesis in vivo and in vitro.â¢ Endophytes have the commercial potentials in terpenoid bioproduction and biotransformation.â¢ Synthetic biology and multiomics will improve terpenoid bioproduction in engineered cell factories.
### Instruction: Please summerize the given abstract to a title ### Response: Biodegradation of tricresyl phosphates isomers by a novel microbial consortium and the toxicity evaluation of its major products ### Response:	A novel microbial consortium ZY1 capable of degrading tricresyl phosphates (TCPs) was isolated, it could quickly degrade 100% of 1â¯mg/L tri-o-cresyl phosphate (ToCP), tri-p-cresyl phosphate (TpCP) and tri-m-cresyl phosphate (TmCP) within 36, 24 and 12â¯h separately and intracellular enzymes occupied the dominated role in TCPs biodegradation. Additionally, triphenyl phosphate (TPHP), 2-ethylhexyl diphenyl phosphate (EHDPP), bisphenol-A bis (diphenyl phosphate) (BDP), tris (2-chloroethyl) phosphate (TCEP) and tris (1-chloro-2-propyl) phosphate (TCPP) could also be degraded by ZY1 and the aryl-phosphates was easier to be degraded. The TCPs reduction observed in freshwater and seawater indicated that high salinity might weak the degradability of ZY1. The detected degradation products suggested that TCPs was mainly metabolized though the hydrolysis and hydroxylation. Sequencing analysis presented that the degradation of TCPs relied on the cooperation between sphingobacterium, variovorax and flavobacterium. The cytochrome P450/NADPH-cytochrome P450 reductase and phosphatase were speculated might involve in TCPs degradation. Finally, toxicity evaluation study found that the toxicity of the diesters products was lower than their parent compound based on the generation of the intracellular reactive oxygen (ROS) and the apoptosis rate of A549 cell. Taken together, this research provided a new insight for the bioremediation of TCPs in actual environment.
### Instruction: Please summerize the given abstract to a title ### Response: Techno-Economic Evaluation of Hand Sanitiser Production Using Oil Palm Empty Fruit Bunch-Based Bioethanol by Simultaneous Saccharification and Fermentation (SSF) Process ### Response:	Oil palm empty fruit bunch (OPEFB) is a potential raw material abundantly available for bioethanol production However, the second-generation bioethanol is still not yet economically feasible The COVID-19 pandemic increases the demand for ethanol as the primary ingredient of hand sanitisers This study evaluates the techno-economic feasibility of hand sanitiser production using OPEFB-based bioethanol OPEFB was alkaline-pretreated, and simultaneous saccharification and fermentation (SSF) was then performed by adding Saccharomyces cerevisiae and cellulose enzyme The cellulose content of the OPEFB increased from 39 30% to 63 97% after pretreatment The kinetic parameters of the OPEFB SSF at 35 °C, which included a µmax, ks, and kd of 0 018 h-1, 0 025 g/dm3, and 0 213 h-1, respectively, were used as input in SuperPro Designer® v9 0 The total capital investment (TCI) and annual operating costs (AOC) of the plant were $645,000 and $305,000, respectively, at the capacity of 2000 kg OPEFB per batch The batch time of the modelled plant was 219 h, with a total annual production of 32,506 16 kg hand sanitiser The minimum hand sanitiser selling price was found to be $10/L, achieving a positive net present value (NPV) of $108,000, showing that the plant is economically feasible
### Instruction: Please summerize the given abstract to a title ### Response: A guide to using the Internet to monitor and quantify the wildlife trade. ### Response:	The unrivalled growth in e-commerce of animals and plants presents an unprecedented opportunity to monitor wildlife trade to inform conservation, biosecurity, and law enforcement. Using the Internet to quantify the scale of the wildlife trade (volume, frequency) is a relatively recent and rapidly developing approach, which currently lacks an accessible framework for locating relevant websites and collecting data. Here, we present an accessible guide for Internet-based wildlife trade surveillance, which uses a repeatable and systematic method to automate data collection from relevant websites. Our guide is adaptable to the multitude of trade-based contexts including different focal taxa or derived parts, and locations of interest. We provide information for working with the diversity of websites that trade wildlife, including social media platforms. Finally, we discuss the advantages and limitations of web data, including the challenges presented by trade occurring on clandestine sections of the Internet (e.g., deep and dark web). Article Impact Statement: The Internet is a vast source of wildlife trade data and a generalizable framework is provided to research unexplored contexts of the trade. This article is protected by copyright. All rights reserved.
### Instruction: Please summerize the given abstract to a title ### Response: Causal networks of phytoplankton diversity and biomass are modulated by environmental context. ### Response:	Untangling causal links and feedbacks among biodiversity, ecosystem functioning, and environmental factors is challenging due to their complex and context-dependent interactions (e.g., a nutrient-dependent relationship between diversity and biomass). Consequently, studies that only consider separable, unidirectional effects can produce divergent conclusions and equivocal ecological implications. To address this complexity, we use empirical dynamic modeling to assemble causal networks for 19 natural aquatic ecosystems (N24◦~N58◦) and quantified strengths of feedbacks among phytoplankton diversity, phytoplankton biomass, and environmental factors. Through a cross-system comparison, we identify macroecological patterns; in more diverse, oligotrophic ecosystems, biodiversity effects are more important than environmental effects (nutrients and temperature) as drivers of biomass. Furthermore, feedback strengths vary with productivity. In warm, productive systems, strong nitrate-mediated feedbacks usually prevail, whereas there are strong, phosphate-mediated feedbacks in cold, less productive systems. Our findings, based on recovered feedbacks, highlight the importance of a network view in future ecosystem management.
### Instruction: Please summerize the given abstract to a title ### Response: Distribution of Pb isotopes in different chemical fractions in bed sediments from lower reaches of the Xiangjiang River, Hunan province of China ### Response:	This paper reports Pb isotopes in different fractions following the three step BCR and 1â¯M HCl extractions on river sediments from lower reaches of the Xiangjiang river in China, and highlights the importance of Pb isotopes in heavy metal contamination assessment. Lead concentrations and Pb isotopes in bulk sediments and sediment fractions (leachates and residues) from the river were analysed using ICP-MS techniques. Results showed that sediments were highly enriched with Pb with enrichment factors >5.5, while Pb in sediments was dominated by reducible and residual Pb fractions, residing mainly in Fe-oxide and silicate minerals. Pb isotopes in sediments was characterized by radiogenic Pb produced from the decay of uranium and thorium with 206Pb/207Pb ratios of 1.1744 for less radiogenic Pb and 1.1816 for more radiogenic Pb. The leachates and residues from BCR extraction generally had similar Pb isotope compositions, of which the 206Pb/207Pb ratios were 1.1798â¯±â¯0.002 and 1.1844â¯±â¯0.008 respectively. Differentiation of Pb isotopes between BCR leachates and residues was insignificant. However, differentiation between leachates and residues using 1â¯M HCl extraction was significant, as shown by average 206Pb/207Pb ratios of 1.1746â¯±â¯0.005 and 1.1858â¯±â¯0.008 for leachates and residues respectively. Pb isotopic tracing suggests that Pb in sediments from Zhuzhou section arose from the mixing of anthropogenic Pb from coal combustion (39%) and mining-smelting for Pb-Zn ores (58%); while Pb in sediments from Xiangtan, Changsha and Xiangyin sections arose from the mixing of anthropogenic Pb from mining-smelting for Pb-Zn ores (54%), and lithologically inherited Pb from granite weathering (35%) with a small amount of contribution from coal combustion (10%). The present study suggests that the BCR extraction scheme was not appropriate for ecological risk assessment of heavy metal contamination in mining-impacted (ore-Pb dominated) river sediments.
### Instruction: Please summerize the given abstract to a title ### Response: Diversity and distribution of ferns in sub‐Saharan Africa, Madagascar and some islands of the South Atlantic ### Response:	Aim This paper reports the diversity and endemism patterns of African ferns, and explores the potential role of diversity refuges and environmental and historical factors in the shaping of these patterns. Material and locations The extant fern taxa occupying Africa south of the Sahara, Madagascar and some islands of the South Atlantic. Methods The number of taxa in each area or operational geographical unit (OGU) was scored, and the correlation between this number and physical and climatic variables analysed by standard pairwise and stepwise multiple regression analysis (SPR and SMR). The effects of biological factors such as dispersal capacity, reproductive biology, genetic features and certain physiological adaptations were evaluated by comparing the number of species in each OGU. Floral affinities among OGUs were analysed using non‐metric multi‐dimensional scaling (NMS) and parsimonic analysis of dispersion (PAD), and compared with β‐turnover and inter‐OGU distances. Results OGU area, elevation and the distance between refuges determined the composition of local floras, but only greater OGU area and the existence of higher maximum elevations increased species richness. The distance between refuges also affected the number of endemic species, especially on islands. The biological features studied only slightly influenced fern distribution. The main climatic predictor of species number was humidity. SPR and SMR revealed three main groups of ferns with different ecological trends. NMS and PAD analyses separated the four areas of highest diversity in Africa, three of which are inhabited by ferns with distinct ecological requirements. The fourth area was Madagascar, which shows an accumulation of endemic and relict diversity that is not easy to explain. Main conclusions The distribution of ferns in Africa has been influenced by refuges. These probably allowed many species to recolonize the neighbouring areas after the extinctions of the Pleistocene. Three major components were detected in the African flora: Guinea‐Congolian thermophilous, cold‐tolerant Afro‐montane, and Southern drought‐tolerant elements. These are related to the three main refuge areas, i.e. the Gulf of Guinea area, the eastern tropical region, and the Cape region. Endemicity in ferns was found to be lower than that of seed plants due to the higher dispersability of fern spores. The distance between OGUs seems to be the main predictor of the number of endemic fern species these areas contain.
### Instruction: Please summerize the given abstract to a title ### Response: SIMULATING NEW ZEALAND FOREST DYNAMICS WITH A GENERALIZED TEMPERATE FOREST GAP MODEL ### Response:	A generalized computer model of forest growth and nutrient dynamics (LINKAGES) was adapted for the temperate evergreen forests of New Zealand. Systematic differences in species characteristics between eastern North American species and their New Zealand counterparts prevented the initial version of the model from running acceptably with New Zealand species. Several equations were identified as responsible, and those modeling available light were extended to give more robust formulations. The resulting model (LINKNZ) was evaluated by comparing site simulations against independent field measurements of stand sequences and across temperature and moisture gradients. It successfully simulated gap dynamics and forest succession for a range of temperate forest ecosystems in New Zealand, while retaining its utility for the forests of eastern North America. These simulations provided insight into New Zealand conifer–hardwood and beech species forest succession. The adequacy of the ecological processes, such as soil moisture balance, decomposition rates, and nutrient cycling, embodied in a forest simulation model was tested by applying it to New Zealand forest ecosystems. This gave support to the model’s underlying hypothesis, derived from LINKAGES, that interactions among demographic, microbial, and geological processes can explain much of the observed variation in ecosystem carbon and nitrogen storage and cycling. The addition of a disturbance option to the model supported the hypothesis that large‐scale disturbance significantly affects New Zealand forest dynamics.
### Instruction: Please summerize the given abstract to a title ### Response: Herbaspirillum camelliae sp. nov., a novel endophytic bacterium isolated from Camellia sinensis L. ### Response:	Bacterial strain WT00CT is an endophytic bacterium that was isolated from the tea plant (Camellia sinensis L.). The phylogenetic analysis of 16S rRNA genes demonstrated that strain WT00CT was a member of the genus Herbaspirillum. This strain is microaerobic, gram-negative and non-pigmented, and its cells are rod shaped, with a polar flagellum. It grew optimally at 34-37 °C, pH 5.0-8.0 and 0-1.5% NaCl (w/v). The G + C content of its genomic DNA was 62.36 mol%. C16:0, iso-C15:0, iso-C17:0, anteiso-C15:0 and anteiso-C17:0 were major fatty acids. The strain WT00CT contained six polar lipids, namely DPG (diphosphatidylglycerol), PE (phosphatidylethanolamine), PG (phosphatidylglycerol), PC (phosphatidylcholine), GL (glycolipid) and APL (aminophospholipids), and its respiratory quinone was Q8. The strain WT00CT had a genome size of 6.08 Mb with a total ORF of 5,537, in which one gene cluster (36 genes) encoding a type IV secretion system was absent in other members of the Herbaspirillum genus. ANI values of genomic comparison between the strain WT00CT and other Herbaspirillum species were 75-96%. Based on the phylogenetic, chemotaxonomic and phenotypic data presented here, the strain WT00CT represents a novel species in the Herbaspirillum genus, for which the name Herbaspirillum camelliae sp. nov. is proposed. The type strain of H. camelliae sp. nov. is WT00CT (AB 2018017 T and KCTC 62527 T).
### Instruction: Please summerize the given abstract to a title ### Response: Visitors’ Perceptions of Cultivation Technology Innovation in Agro Innovation Park, BPTP Jambi ### Response:	Agro Innovation Park is a forum for developing various superior technologies from the Agricultural Research and Development Agency The services provided are complemented by a library, a consultation area, a training arena, and a playground This study aims to determine visitors’ perceptions of several technological innovations implemented The data presented are in the form of park arrangement, various technological innovations, number of visitors, perceptions of visitors, and apprentices in 2018, 2019, and 2020 The Agro Innovation Park is located in Sungai Tiga IP2TP office area, Pondok Meja Village, Mestong District, Muaro Jambi Regency, Jambi Province This park was built in 2015, having several types of plants with various adaptive and innovative technologies, ranging from short-lived plants such as leaf-producing vegetables, medium-aged plants such as fruit-producing vegetables, and long-lived plants such as perennials, and also equipped with medicinal plants There was an increase in the number of visitors and internship students from 2018 to 2019, but there was a decline afterward This happened due to the Covid-19 pandemic resulting in the temporary closure of parks for visitors and apprentices The findings indicate that In terms of the service provided, 20% of the visitors were satisfied and 80% said that they were very satisfied For the various technological innovations implemented, 88% of the visitors stated that they were very interested in park management and 75% were very interested in hydroponic technology innovations
### Instruction: Please summerize the given abstract to a title ### Response: Significance of country red lists of endangered species for biodiversity conservation ### Response:	Both the IUCN Red List of Endangered Species and country red lists of endangered species assess the risk of extinction of species, the former being a global assessment whereas the latter provides regional assessments The IUCN Red List of Endangered Species alerts the world to the status of endangered species, and also serves as a database of global biodiversity Country red lists, on the other hand, ascertain the status of species in particular countries, filling knowledge gaps in the former The two lists are thus complementary to each other However, insufficient attention has been paid to date to country red lists of endangered species Country-level red lists should be given greater attention for at least the following reasons: (1) a sovereign country is the main authority for taking conservation action in regard to wildlife species within its boundaries based on the level of endangerment (conservation status) of the species;(2) for endemic species in a country, the country red list status constitutes its global status;(3) for species whose ranges cross national borders, the country's red list status reflects the survival status of the species in the country;(4) combined with the IUCN global red list, the country red list provides a basis from which to consider the establishment of transnational protected areas, the protection of important habitats for migratory species, and the protection of international migration corridors;(5) the category of "Regional Extinction" is unique to country/regional red lists of endangered species, providing an indication of the danger of extinction of the species at the country level;and (6) country red lists of endangered species can provide updated information on the inventory, classification, distribution and status of species in the country Yet, the importance of country red lists is often overlooked under many different circumstances Following onset of the global COVID-19 pandemic, however, people's outlook in China has been changing in regard to the relationship between humans and wildlife Consequently, China will be amending national laws on wildlife protection, epidemic prevention, and the List of State Key Protected Wild Animal Species, in order to better prevent and control emerging zoonoses The status of wildlife species included in the country red list of endangered species should be one of the defining elements for identifying and updating species on the List of State Key Protected Wild Animal Species in China Thus, it is critical to recognize the significance of the country red list of endangered species at this special moment in time
### Instruction: Please summerize the given abstract to a title ### Response: Sucrose transport in response to drought and salt stress involves ABA-mediated induction of OsSWEET13 and OsSWEET15 in rice ### Response:	Abiotic stresses, including drought and salinity, negatively affect plant development and physiology at molecular and metabolic levels. Sucrose transport, mediating distribution of photosynthates in plant, is a key physiological process impacted by drought and salinity stresses, as sucrose is a prime energy and signaling molecule as well as an osmolyte. Therefore, understanding the effects of abiotic stresses on sucrose transport and transporters, and underlying genetic and molecular mechanisms, is imperative to maintain sugar homeostasis in plants under stress. Here, we investigated the effects of drought and salinity stresses on sucrose transport and distribution, and on expression levels of genes encoding Sugars Will Eventually be Exported Transporters (SWEETs), along with a potential transcription factor regulating SWEET expression in rice. We observed that drought and salinity stresses increased the sucrose content in leaf and root tissues and in phloem sap of rice indica varieties. Expression analyses of SWEET genes and histochemical analysis of ß-glucuronidase-reporter transgenic plants suggested that OsSWEET13 and OsSWEET15 are major SWEET transporters regulating the sucrose transport and levels in response to the abiotic stresses. Transactivation analyses showed that an abscisic acid (ABA)-responsive transcription factor OsbZIP72 directly binds to the promoters of OsSWEET13 and OsSWEET15 and activates their expression. Taken together, the results showed that the higher expressions of OsSWEET13 and OsSWEET15 genes, induced by binding of an ABA-responsive transcription factor OsbZIP72 to the promoters, potentially modulate sucrose transport and distribution in response to the abiotic stresses. The mechanism could possibly be targeted for maintaining sugar homeostasis in rice under drought and salinity stresses.
### Instruction: Please summerize the given abstract to a title ### Response: Application of the Safe-By-Design Concept in Crop Breeding Innovation ### Response:	The present paper proposes the application of the safe-by-design concept to crop breeding innovation with the aim to accommodate safety considerations for new agricultural food and feed products. Safe-by-design can be implemented in all stages of the innovation cycle of agricultural products, from the early stages of research and development towards the post-market stage. Our proposed application of safe-by-design can be part of "responsible research and innovation" concepts, because they share features such as risk prevention strategies and a participatory approach. Early awareness of potential safety issues can guide the development of agricultural products towards safe options, both at the process and product level, and thus may help to reduce extensive pre-market assessment studies that might otherwise be needed further downstream for regulatory product approval. Here, it is discussed how the proposed safe-by-design approach can be introduced into the development of safe food crops using emerging technologies, such as gene editing and synthetic biology, and how this may help to safeguard the safety of our food and feed supply in the light of the ongoing global innovations in agricultural crop breeding.
### Instruction: Please summerize the given abstract to a title ### Response: Thermoregulatory behavior on Sun exposure by Mimon bennettii (Gray, 1838) at southern Brazil (Chiroptera: Phyllostomidae: Phyllostominae) ### Response:	This paper aims to describe the thermoregulatory behavior on Sun exposure by the phyllostomid bat Mimon bennettii (Gray, 1838). This behavior was recorded at the entrance of a small limestone cave in southern Brazil. This kind of thermoregulation can be considered a behavioral convergence with pteropodid bats, and perhaps a necessity in bats occurring in subtropical and temperate regions.(AU)
### Instruction: Please summerize the given abstract to a title ### Response: A Bayesian evolutionary model towards understanding wildlife contribution to F4-family Mycobacterium bovis transmission in the South-West of France ### Response:	In two “départements” in the South-West of France, bovine tuberculosis (bTB) outbreaks due to Mycobacterium bovis spoligotype SB0821 have been identified in cattle since 2002 and in wildlife since 2013. Using whole genome sequencing, the aim of our study was to clarify badger contribution to bTB transmission in this area. We used a Bayesian evolutionary model, to infer phylogenetic trees and migration rates between two pathogen populations defined by their host-species. In order to account for sampling bias, sub-population structure was inferred using the marginal approximation of the structured coalescent (Mascot) implemented in BEAST2. We included 167 SB0821 strains (21 isolated from badgers and 146 from cattle) and identified 171 single nucleotide polymorphisms. We selected a HKY model and a strict molecular clock. We estimated a badger-to-cattle transition rate (median: 2.2 transitions/lineage/year) 52 times superior to the cattle-to-badger rate (median: 0.042 transitions/lineage/year). Using the maximum clade credibility tree, we identified that over 75% of the lineages from 1989 to 2000 were present in badgers. In addition, we calculated a median of 64 transition events from badger-to-cattle (IQR: 10–91) and a median of zero transition event from cattle-to-badger (IQR: 0–3). Our model enabled us to infer inter-species transitions but not intra-population transmission as in previous epidemiological studies, where relevant units were farms and badger social groups. Thus, while we could not confirm badgers as possible intermediaries in farm-to-farm transmission, badger-to-cattle transition rate was high and we confirmed long-term presence of M. bovis in the badger population in the South-West of France. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13567-022-01044-x.
### Instruction: Please summerize the given abstract to a title ### Response: Enhanced water uptake in the longitudinal direction by shiitake mycelium in shiitake cultivation logs: water content distribution in logs measured by magnetic resonance imaging ### Response:	In the cultivation of shiitake mushrooms (Lentinula edodes), the farmer needs to know the time needed to water in order to adjust the water content of the logs. To study the enhanced water uptake in the longitudinal direction by shiitake mycelium in shiitake cultivation logs, six dried test logs (Quercus serrata, diameter of 38 to 48 mm, length of 110 to 118 mm) were used. Three test logs had shiitake mycelium grown on them, and the remaining three test logs had mold generated on them. Liquid water was supplied to the bottom surface of the test log which had its longitudinal direction along the line of gravity. Water content distribution in the logs was measured in chronological order using magnetic resonance imaging (MRI) with 1 Tesla. The calibration curve for converting the signal intensity of the MR image into the water content in the test log was determined by cutting the test log at 5-mm intervals and measuring the water content distribution using the mass method. Spatial distribution of the water content of the test log without shiitake mycelium depending on the cumulative water supply time was obtained, and the distribution shape was always concave corresponding to the exact solution of an unsteady one-dimensional diffusion equation with one diffusion coefficient. In the case of the test log in which shiitake mycelium grew, within a few hours after liquid water supply the water content increased in the whole region where shiitake mycelium grew, and the shape of the water content distribution in the longitudinal direction became convex. Based on observation of water penetration into logs by MRI and an optical microscope, it is believed that the driving force behind increased rise in liquid water in the longitudinal direction in the test log is the capillary force acting in vessels.
### Instruction: Please summerize the given abstract to a title ### Response: Phylogenetic relationships in the Gesnerioideae (Gesneriaceae) based on nrDNA ITS and cpDNA trnL‐F and trnE‐T spacer region sequences ### Response:	The Gesnerioideae includes most of the New World members of the Gesneriaceae family and is currently considered to include five tribes: Beslerieae, Episcieae, Gesnerieae, Gloxinieae, and Napeantheae. This study presents maximum parsimony and maximum likelihood phylogenetic analyses of nuclear ribosomal DNA internal transcribed spacer regions (ITS), and the chloroplast DNA trnL intron, trnL‐trnF intergenic spacer region, and trnE‐trnT intergenic spacer region sequences. The ITS and cpDNA data sets strongly support the monophyly of a Beslerieae/Napeantheae clade; an Episcieae clade; a Gesnerieae clade; a Gloxinieae clade minus Sinningia, Sinningia relatives, and Gloxinia sarmentiana; and a Sinningia/Paliavana/Vanhouttea clade. This is the first study to provide strong statistical support for these tribes/clades. These analyses suggest that Sinningia and relatives should be considered as a separate tribe. Additionally, generic relationships are explored, including the apparent polyphyly of Gloxinia. Chromosome number changes are minimized on the proposed phylogeny, with the exception of the n = 11 taxa of the Gloxinieae. Scaly rhizomes appear to have been derived once in the Gloxinieae sensu stricto. The number of derivations of the inferior ovary is unclear: either there was one derivation with a reversal to a superior ovary in the Episcieae, or there were multiple independent derivations of the inferior ovary.
### Instruction: Please summerize the given abstract to a title ### Response: Phenotypic plasticity and exotic plant invasions: effects of soil nutrients, species nutrient requirements and types of traits ### Response:	High phenotypic plasticity has long been considered as a characteristic promoting exotic plant invasions. However, the results of the studies testing this hypothesis are still inconsistent. Overlooking the effects of species resource requirements and environmental resource availability may be the main reasons for the ambiguous conclusions. Here, we compared phenotypic plasticity between five noxious invasive species with different nutrient requirements (evaluated using the soil nutrient status of their natural distribution ranges) and their phylogenetically-related natives under five nutrient levels. We found that species with high nutrient requirements showed greater plasticity of total biomass than species with low nutrient requirements, regardless of their status (invasive or native). Invasives with high nutrient requirements had greater growth plasticity than their related natives, which may contribute to their invasiveness under high-nutrient environments. However, compared to the related natives, a higher growth plasticity may not help exotic species with low nutrient requirements to invade nutrient-rich habitats, and exotic species with high nutrient requirements to invade nutrient-limited habitats. In contrast, invasives with low nutrient requirements exhibited lower growth plasticity than their related natives, contributing to their invasiveness under nutrient-limited habitats. Functional traits showed growth-related plasticity in only 10 cases (3.8%), and there was no functional trait whose plastic response to soil nutrients was beneficial to exotic plant invasions. Our study indicates that low growth plasticity could also promote exotic plant invasions, high plasticity may not necessarily lead to invasiveness. We must test the adaptive significance of plasticity of functional traits when studying its biological roles.
### Instruction: Please summerize the given abstract to a title ### Response: Functional traits explain amphibian distribution in the Brazilian Atlantic Forest ### Response:	AIM: Species distributions are one of the most important ways to understand how communities interact through macroecological relationships. The functional abilities of a species, such as its plasticity in various environments, can determine its distribution, species richness and beta diversity patterns. In this study, we evaluate how functional traits influence the distribution of amphibians, and hypothesize which functional traits explain the current pattern of amphibian species composition. LOCATION: Atlantic Forest, Brazil. TAXON: Amphibia (Anura and Gymnophiona) METHODS: Using potential distributions of Brazilian amphibians from Atlantic Forest based on their functional traits, we analysed the influence of biotic and abiotic factors on species richness, endemism (with permutation multivariate analysis) and beta diversity components (i.e. total, turnover and nestedness dissimilarities). RESULTS: Environmental variables explained 59.5% of species richness, whereas functional traits explained 15.8% of species distribution (geographical species range) for Anuran and 88.8% for Gymnophiona. Body size had the strongest correlation with species distribution. Results showed that species with medium to large body size, and species that are adapted to living in open areas tended to disperse from west to east direction. Current forest changes directly affected beta diversity patterns (i.e. most species adapted to novel environments increase their ranges). Beta diversity partitioning between humid and dry forests showed decreased nestedness and increased turnover by increasing altitude in the south‐eastern region of the Atlantic Forest. MAIN CONCLUSIONS: Our study shows that functional traits directly influence the ability of the species to disperse. With the alterations of the natural environment, species more apt to these alterations have dispersed or increased their distribution, which consequently changes community structure. As a result, there are nested species distribution patterns and homogenization of amphibian species composition throughout the Brazilian Atlantic Forest.
### Instruction: Please summerize the given abstract to a title ### Response: Comparing different farming habitats for mid-water rope nurseries to advance coral restoration efforts in the Maldives ### Response:	The need for comprehensive and effective coral restoration projects, as part of a broader conservation management strategy, is accelerating in the face of coral reef ecosystem decline. This study aims to expand the currently limited knowledge base for restoration techniques in the Maldives by testing the performance of mid-water rope nurseries in a lagoon and a reef habitat. We examined whether different coral farming habitats impacted fragment survival, health and growth of two coral genera and how the occurrence of mutualistic fauna, predation and disease influenced coral rearing success. Two nurseries were stocked with a total of 448 Pocillopora verrucosa and 96 Acropora spp. fragments, divided into different groups (four Pocillopora groups: lagoon nursery at 5 m; reef nursery at 5, 10 and 15 m; two Acropora groups: lagoon nursery at 5 m and reef nursery at 5 m). Eight fragment replicates from the same donor colony (Pocillopora genets: N = 14, Acropora genets N = 6) were used in each group and monitored for one year. Our results show that fragment survival was high in both farming habitats (>90%), with P. verrucosa surviving significantly better in the lagoon and Acropora spp. surviving and growing significantly faster in the reef nursery. P. verrucosa growth rates were similar between reef and lagoon habitat. Different rearing depths in the reef nursery had no impact on the survival of P. verrucosa but coral growth decreased considerably with depth, reducing fragments’ ecological volume augmentation and growth rates by almost half from 5 to 15 m depth. Further, higher fish predation rates on fragments were recorded on the reef, which did not impact overall nursery performance. Mutualistic fauna, which correlated positively with fragment survival, was more frequently observed in the lagoon nursery. The occurrence of disease was noted in both habitats, even though implications for fragment health were more severe in the lagoon. Overall, our study demonstrates that lagoon and reef nurseries are suitable for rearing large numbers of coral fragments for transplantation. Nevertheless, we recommend considering the specific environmental conditions of the farming habitat, in particular water quality and year-round accessibility, in each case and to adjust the coral farming strategy accordingly. We hope that this novel research encourages the increased application of mid-water rope nurseries for ‘coral gardening’ to advance coral reef recovery and climate resilience in the Maldives.
### Instruction: Please summerize the given abstract to a title ### Response: Pooled samples and eDNA-based detection can facilitate the “clean trade” of aquatic animals ### Response:	The regional and international trade of live animals facilitates the movement, spillover, and emergence of zoonotic and epizootic pathogens around the world. Detecting pathogens in trade is critical for preventing their continued movement and introduction, but screening a sufficient fraction to ensure rare infections are detected is simply infeasible for many taxa and settings because of the vast numbers of animals involved—hundreds of millions of live animals are imported into the U.S.A. alone every year. Batch processing pools of individual samples or using environmental DNA (eDNA)—the genetic material shed into an organism’s environment—collected from whole consignments of animals may substantially reduce the time and cost associated with pathogen surveillance. Both approaches, however, lack a framework with which to determine sampling requirements and interpret results. Here I present formulae for pooled individual samples (e.g,. swabs) and eDNA samples collected from finite populations and discuss key assumptions and considerations for their use with a focus on detecting Batrachochytrium salamandrivorans, an emerging pathogen that threatens global salamander diversity. While empirical validation is key, these formulae illustrate the potential for eDNA-based detection in particular to reduce sample sizes and help bring clean trade into reach for a greater number of taxa, places, and contexts.
### Instruction: Please summerize the given abstract to a title ### Response: A Cross-Cultural Analysis of Plant Resources among Five Ethnic Groups in the Western Himalayan Region of Jammu and Kashmir ### Response:	SIMPLE SUMMARY: For generations, local ethnic communities have amassed a vast body of traditional ecological knowledge (TEK) on the use of plant resources. Ethnobiologists have recently focused on cross-cultural studies in order to record and measure the processes guiding the evolution of TEK within a specific society; both to preserve it and use it sustainably in the future. The current study documents the TEK of plant resources from five ethnic communities of the Jammu and Kashmir (J&K) region, Western Himalayas. Through semi-structured interviews and group discussions, we recorded a total of 127 plant species used by local ethnic groups for various provisioning services (i.e., medicine, food, fodder, fuelwood, herbal tea) and/or with spiritual significance. Across the ethnic groups, Gujjar reported the highest number of plants (25% species), followed by Pahari (24% species), and the lowest number of plants were reported by Dogra (12% species). Looking at plant uses among different cultural groups, we discovered that, especially, some ritual practices were associated with specific plants. We found a relatively high overlap in the use of specific plants among the ethnic groups, namely Gujjar, Bakarwal, and Pahari. Certain species were found to be common in all cultures due to their food value. The current study is a collaborative effort that includes not only documenting, but also cross-cultural comparisons of the documented species, in order to better understand the diverse traditional plant usage systems. This will not only increase regional understanding of cross-cultural ethnobotany, but it will also open opportunities for local people to be rewarded for promoting and celebrating their expertise and participating in future development activities. ABSTRACT: Plant resources have always been valuable in human life, and many plant species are used in medicine, food, and ritual, and resource utilization is closely related to cultural diversity. Our study was conducted from June 2019 to April 2021, during which we aimed to document the local knowledge of plant resources of five ethnic groups, i.e., the Gujjar, Bakarwal, Kashmiri, Pahari, and Dogra communities of the Jammu and Kashmir (J&K) region, Western Himalayas. Through semi-structured interviews (N = 342) and group discussions (N = 38), we collected data on the ethnobotanical uses of plant resources. The data was subjected to hierarchical cluster analysis and ordination techniques (Principal Component Analysis) via, R software of version 4.0.0. Traditional uses were classified into three groups, i.e., single-, double-, and multi-use groups. The study recorded a total of 127 plant species, belonging to 113 genera and distributed among 64 botanical families. The dominant plant families were the Asteraceae, with 8% of all species, followed by Lamiaceae (6%), Polygonaceae (5%) and Ranunculaceae (4%). The recorded plant taxa were frequently used for medicine (51.4% responses), followed by food (14.9%), and fodder (9.5%). Principal component analysis (PCA) separated three groups of provisioning services depending on plant consumption preference levels. Comparative analysis showed remarkable similarities in plant uses (food, medicinal) among the Gujjar and Bakarwal ethnic groups, as both groups share a common culture. Some plants like Azadirachta indica, Brassica campestris, Ulmus wallichiana, Amaranthus blitum, and Celtis australis were also used for magico-religious purposes. We also recorded some medicinal uses that are new to the ethnobotanical literature of the J&K Himalayas, such as for Betula utilis, Sambucus wightiana, and Dolomiaea macrocephala, in our case for example local medicinal recipe, which is derived from Dolomiaea macrocephala, often known as Nashasta, used to treat weakness, back pain, and joint pain. Similarly, we also recorded new food uses for Eremurus himalaicus. Moreover, we also observed some plants for instance, Fragaria nubicola, Betula utilis and Juniperus communis have spiritual significance (i.e., amulets and scrolls) for this part of the Himalayan region. The present study provides a useful tool for resource management and can help in developing scientifically informed strategies for the conservation of plant resources.
### Instruction: Please summerize the given abstract to a title ### Response: The Prevalence of Litter Foraging Among UK Birds Lessons Learned From A Citizen Science Project ### Response:	Anthropogenic food sources, such as litter, are readily available to birds in urban areas. As an overly anthropogenic diet can have negative health consequences for wildlife, monitoring the frequency of foraging in litter compared to natural food resources can be an important component of wildlife conservation efforts. To understand how common litter foraging is among different bird species, we conducted a citizen science project with volunteers across the UK. Through this project, we also tried to engage people in birdwatching and bird surveys who would not normally participate in these activities. A particular focus was on recruiting respondents from underrepresented groups, and the methodology was designed to accommodate people without any background knowledge of birds. While we did not receive enough observations to draw conclusions about the litter foraging rates of different bird species across the UK, we report the submissions we received, as well as the demographic composition of the volunteer group. We successfully reached volunteers who did not participate in birdwatching or BTO bird surveys before, as well as some young volunteers, but were unsuccessful in reaching respondents from diverse socioeconomic backgrounds. We hope that the successes and failures of our methods reported here can be useful to others designing citizen science studies, so that birdwatching and volunteering for bird surveys will be equally accessible to all in the future.
### Instruction: Please summerize the given abstract to a title ### Response: Connections between trades and trafficking in wildlife and drugs ### Response:	Whilst drug trafficking has been a concern for several decades, wildlife trafficking has only fairly recently garnered international attention. Often media coverage of wildlife trafficking links it to the illegal trade of drugs. This article analyses wildlife and drug trafficking connections of various kinds. The purpose is to reveal the overlaps and synergies of wildlife and drug trafficking, providing concrete examples of where these markets co-exist as well as intertwine based on literature and original fieldwork. It explores the question of ‘Why in some cases, an illicit market remains focused on a single commodity, whilst in others it accommodates a combination of illicit commodities?’ This study identifies different types of wildlife-drugs linkages, including combined contraband, camouflage, multiple trade lines, shared smuggling routes and transportation methods, barter trade, and laundering drug money. The article shows that illicit markets are complex and the examples of activities and transactions that are provided illuminate some of the different dimensions of converging and diverging trades involving wildlife and drugs.
### Instruction: Please summerize the given abstract to a title ### Response: Toxicity of dinonylnaphthalene sulfonates to Pimephales promelas and epibenthic invertebrates ### Response:	Dinonylnaphthalene sulfonic acids (NSAs) are high production volume chemicals that are used primarily as additives in a wide range of industrial products (i.e., coatings, sealants, fuels, metal-extractants, paints, rubber materials). This study examined the effect of three NSA congeners on freshwater organisms: barium dinonylnaphthalene sulfonate (BaDNS), calcium dinonylnaphthalene sulfonate (CaDNS), and dinonylnaphthalene disulfonic acid (DNDS). Chronic effects were characterized by exposing fertilized fathead minnow eggs to sediment-associated NSAs and measuring various developmental and growth endpoints for 21 d. No effects in hatch success and larval growth were observed when fathead minnow eggs were exposed to CaDNS and DNDS concentrations up to 246 and 798 µg/g dry weight, respectively, in spiked sediment (~2% organic carbon). However, when NSAs were associated with substrate containing no organic carbon (sand), EC50s for fathead minnow hatch success, larval growth, biomass production, and overall survival were 58.3, 18.8, 15.5, and 13.8 µg/L, respectively, for CaDNS. Acute effect characterization was also conducted in water-only exposures for the three NSA congeners using the freshwater amphipod Hyalella azteca, the pulmonate snail Planorbella pilsbryi, and larval freshwater mussels Lampsilis cardium and Lampsilis siliquoidea. The sulfonate salts (BaDNS and CaDNS) were significantly more acutely toxic to all tested invertebrates in the water-only exposures, with LC50s ranging from 0.47 to 12.1 µg/L, compared to DNDS (LC50s ≥ 98.2 µg/L). This is the first study to provide empirical data on the aquatic toxicity of three NSA congeners.
### Instruction: Please summerize the given abstract to a title ### Response: Fine-mapping and candidate gene analysis of a major locus controlling leaf thickness in rice (Oryza sativa L.) ### Response:	Leaf thickness is an important trait in rice (Oryza sativa L.). It affects both photosynthesis and sink-resource efficiency. However, compared to leaf length and length width, reports seldom focused on leaf thickness due to the complicated measurement and minor difference. To identify the quantitative trait loci (QTL) and explore the genetic mechanism regulating the natural variation of leaf thickness, we crossed a high leaf thickness variety Aixiuzhan (AXZ) to a thin leaf thickness variety Yangdao No.6 (YD 6) and evaluated 585 F(2) individuals. We further use bulked sergeant analysis with whole-genome resequencing (BSA-seq) to identify five genomic regions, including chromosomes 1, 6, 9, 10, and 12. These regions represented significant allele frequency differentiation between thick and thin leaf thickness among the mixed pool offspring. Moreover, we conducted a linkage mapping using 276 individuals derived from the F(2) population. We fine-mapped and confirmed that chromosome 9 contributed the primary explanation of phenotypic variance. We fine-mapped the candidate regions and confirmed that the chromosome 9 region contributed to flag leaf thickness in rice. We observed the virtual cellular slices and found that the bundle sheath cells in YD 6 flag leaf veins are fewer than AXZ. We analyzed the potential regions on chromosome 9 and narrowed the QTL candidate intervals in the 928-kb region. Candidate genes of this major QTL were listed as potentially controlled leaf thickness. These results provide promising evidence that cloning leaf thickness is associated with yield production in rice. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s11032-022-01275-y.
### Instruction: Please summerize the given abstract to a title ### Response: Eichhornia crassipes (Mart.) Solms (natural or carbonized) as biosorbent to remove pollutants in water ### Response:	The prolific aquatic herb Eichhornia crassipes considered a pest in many countries can cause damage such as obstruction of water flows and impair the locomotion of fishing boats. However, E. crassipes is renewable, inexpensive, and widely available in nature, and its ability to adsorb recalcitrant pollutants with mutagenic and carcinogenic properties, including synthetic dyes and heavy metals, has been extensively studied by the scientific community. This review paper analyzes previous reports concerning the use of E. crassipes (in the natural and carbonized form) as an adsorbent for heavy metal cations and textile dye. The adsorptive capacity of E. crassipes, the best conditions (adsorbent dosage, pH, and temperature) for the removal of these pollutants, the mechanism of adsorption, and the comparison between natural and carbonized forms (advantages and disadvantages) are discussed. All the results revised in this review indicated that the use of E. crassipes (and its carbon derived) as adsorbent is promising and is an excellent material to be applied in the water treatment. It could be used in the actual technologies for the treatment of contaminated water by heavy metals and textile dyes; however, more studies need to be made on scale-up, economy projects, and related issues, to be finally implemented in wastewater treatment plants.
### Instruction: Please summerize the given abstract to a title ### Response: Consumer Acceptance of a Ready-to-Eat Meal during Storage as Evaluated with a Home-Use Test ### Response:	A home-use test (HUT) is one method that provides a measure of ecological validity as the product is consumed in home under common daily use circumstances. One product that benefits from being evaluated in-home are ready-to-eat (RTE) meals. This study determined consumer acceptance of microwave-thermally-pasteurized jambalaya, a multi-meat and vegetable dish from American Cajun cuisine, and a control (cooked frozen jambalaya) through an on-line home-use test (HUT) over a 12-week storage period. Paralleling the HUT, an online auction determined consumers’ willingness to pay. The study also explored how the social environment may impact the liking of the meals when a partner of the participants joined the sensory evaluation of the meals. Consumers (n = 50) evaluated microwave-processed jambalaya stored at 2 °C and a control (cooked frozen jambalaya stored at −31 °C) after 2, 8 and 12 weeks of storage. Consumer liking of different sensory attributes was measured. Participants could choose to share the meals with a partner as a way to enhance ecological validity. The responses from 21 partners to the sensory-related questions were collected. After the sensory evaluation, the participants bid on the meal they had just sampled. Results showed that processing method (microwave vs. control) did not significantly influence the measured sensory attributes. Only flavor liking decreased over storage time (p < 0.05). The inclusion of partners significantly increased (p = 0.04) the liking of the appearance of the meals. The mean values of the bids for the meals ranged from $3.33–3.74, matching prices of commercially available jambalaya meals. This study found suggests that the shelf- life of microwave-processed meals could be extended up to 12 weeks without changing its overall liking. The study also shows the importance of exploring HUT methodology for the evaluation of consumers’ acceptance of microwave-processed jambalaya and how including a partner could contribute to enhance ecological validity.
### Instruction: Please summerize the given abstract to a title ### Response: Host-Species Variation and Environment Influence Endophyte Symbiosis and Mycotoxin Levels in Chinese Oxytropis Species ### Response:	Oxytropis plants are widely distributed in the grasslands in northern China. Some Oxytropis species have been reported to contain the mycotoxin swainsonine, an alkaloid which causes poisoning in livestock, referred to as locoism. Previous studies showed that endophytic fungi (Alternaria oxytropis) symbiotically associate with these Oxytropis species to produce swainsonine. However, the influence of variation within the Oxytropis genus on the fixation or loss of symbiosis and toxicity is poorly understood, as is the influence of environmental factors. Here we used a collection of 17 common Oxytropis species sampled in northern China to assess genetic diversity using genotyping by sequencing which was compared with the levels of the endophyte and swainsonine. Results showed that nine Oxytropis species have detectable A. oxytropis colonisation, and seven Oxytropis species contain sufficient swainsonine to be considered poisonous, whereas the rest may be non-toxic. Species variation rather than the genetic lineage was associated with the fixation or loss of endophyte and swainsonine production, which appears to have resulted from genetic drift. Genotype × Environment (G × E) effects were also found to influence endophyte and swainsonine levels amongst species of the Oxytropis genus. Our study will provide a better understanding about the evolutionary basis of A. oxytropis symbiosis and swainsonine biosynthesis in locoweeds.
### Instruction: Please summerize the given abstract to a title ### Response: Microbial and functional characterization of an allochthonous consortium applied to hydrogen production from Citrus Peel Waste in batch reactor in optimized conditions. ### Response:	Energy recovery from lignocellulosic waste has been studied as an alternative to the problem of inappropriate waste disposal. The present study aimed at characterizing the microbial community and the functional activity of reactors applied to H2 production through lignocellulosic waste fermentation in optimized conditions. The latter were identified by means of Rotational Central Composite Design (RCCD), applied to optimize allochthonous inoculum concentration (2.32-5.68 gTVS/L of granular anaerobic sludge), pH (4.32-7.68) and Citrus Peel Waste (CPW) concentration (1.55-28.45 g/L). After validation, the conditions identified for optimal H2 production were 4 gSTV/L of allochthonous inoculum, 29.8 g/L of CPW (substrate) and initial pH of 8.98. In these conditions, 48.47 mmol/L of H2 was obtained, which is 3.64 times higher than the concentration in unoptimized conditions (13.31 mmol H2/L using 15 g/L of CPW, 2 gTVS/L of allochthonous inoculum, pH 7.0). Acetogenesis was the predominant pathway, and maximal concentrations of 3,731 mg/L of butyric acid and 3,516 mg/L of acetic acid were observed. Regarding the metataxonomic profile, Clostridium genus was dramatically favored in the optimized condition (79.78%) when compared to the allochthonous inoculum (0.43%). It was possible to identify several genes related to H2 (i.e dehydrogenases) and volatile fatty acids (VFA) production and with cellulose degradation, especially some CAZymes from the classes Auxiliary Activities, Glycoside Hydrolases and Glycosyl Transferase. By means of differential gene expression it was observed that cellulose degradation and acetic acid production pathways were overabundant in samples from the optimized reactors, highlighting endo-β-1,4-glucanase/cellulose, endo-β-1,4-xylanase, β-glucosidase, β-mannosidase, cellulose β-1,4-cellobiosidase, cellobiohydrolase, and others, as main the functions.
### Instruction: Please summerize the given abstract to a title ### Response: Behavioral response of dissimilatory perchlorate-reducing bacteria to different electron acceptors ### Response:	The response behavior of three dissimilatory perchlorate-reducing bacteria to different electron acceptors (nitrate, chlorate, and perchlorate) was investigated with two different assays. The observed response was species-specific, dependent on the prior growth conditions, and was inhibited by oxygen. We observed attraction toward nitrate when Dechloromonas aromatica strain RCB and Azospira suillum strain PS were grown with nitrate. When D. aromatica and Dechloromonas agitata strain CKB were grown with perchlorate, both responded to nitrate, chlorate, and perchlorate. When A. suillum was grown with perchlorate, the organism responded to chlorate and perchlorate but not nitrate. A gene replacement mutant in the perchlorate reductase subunit (pcrA) of D. aromatica resulted in a loss of the attraction response toward perchlorate but had no impact on the nitrate response. Washed-cell suspension studies revealed that the perchlorate grown cells of D. aromatica reduced both perchlorate and nitrate, while A. suillum cells reduced perchlorate only. Based on these observations, energy taxis was proposed as the underlying mechanism for the responses to (per)chlorate by D. aromatica. To the best of our knowledge, this study represents the first investigation of the response behavior of perchlorate-reducing bacteria to environmental stimuli. It clearly demonstrates attraction toward chlorine oxyanions and the unique ability of these organisms to distinguish structurally analogous compounds, nitrate, chlorate, and perchlorate and respond accordingly. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00253-009-2051-3) contains supplementary material, which is available to authorized users.
### Instruction: Please summerize the given abstract to a title ### Response: Phylogeny of the deep‐sea cirripede family Scalpellidae (Crustacea, Thoracica) based on shell capitular plate morphology ### Response:	A cladistic analysis of 23 extant species of the deep‐sea pedunculate cirripede family Scalpellidae was undertaken, based on 61 shell plate characters, and taking the Jurassic–Cretaceous scalpellomorph genus C retiscalpellum as an out‐group. The consensus tree shows progressive morphological change from basal to more derived taxa, but a derived group is marked by major morphological innovation, including 27 character state changes that permit subdivision of the family into two sharply demarcated clades – the more basal group is here placed within a redefined Scalpellinae (A rcoscalpellum, A rcuatoscalpellum gen. nov., D iotascalpellum gen. nov., G raviscalpellum, R egioscalpellum gen. nov., and S calpellum), and a more derived group named A migdoscalpellinae subfam. nov. that shows numerous progressive trends in morphology, permitting the recognition of three genera (A migdoscalpellum, C atherinum, and W eltnerium). The phylogeny is independently supported by a recently published multiple DNA marker‐based molecular phylogeny. The more basal Scalpellinae appeared in the Aptian (Early Cretaceous, 120 Mya), and derived Amigdoscalpellinae were already present by the Campanian (Late Cretaceous, 78 Mya), represented by C atherinum anglicum sp. nov. and A migdoscalpellum bellulum from the UK Chalk. Specialized receptacles to accommodate dwarf males in the apical interior of the scutum evolved at least three times during the history of the scalpellids. © 2015 The Linnean Society of London
### Instruction: Please summerize the given abstract to a title ### Response: Rapid stomatal closure contributes to higher water use efficiency in major C4 compared to C3 Poaceae crops ### Response:	Understanding water use characteristics of C3 and C4 crops is important for food security under climate change. Here, we aimed to clarify how stomatal dynamics and water use efficiency (WUE) differ in fluctuating environments in major C3 and C4 crops. Under high and low nitrogen conditions, we evaluated stomatal morphology and kinetics of stomatal conductance (gs) at leaf and whole-plant levels in controlled fluctuating light environments in four C3 and five C4 Poaceae species. We developed a dynamic photosynthesis model, which incorporates C3 and C4 photosynthesis models that consider stomatal dynamics, to evaluate the contribution of rapid stomatal opening and closing to photosynthesis and WUE. C4 crops showed more rapid stomatal opening and closure than C3 crops, which could be explained by smaller stomatal size and higher stomatal density in plants grown at high nitrogen conditions. Our model analysis indicated that accelerating the speed of stomatal closure in C3 crops to the level of C4 crops could enhance WUE up to 16% by reducing unnecessary water loss during low light periods, whereas accelerating stomatal opening only minimally enhanced photosynthesis. The present results suggest that accelerating the speed of stomatal closure in major C3 crops to the level of major C4 crops is a potential breeding target for the realization of water-saving agriculture.
### Instruction: Please summerize the given abstract to a title ### Response: More than one way to smell ashore - Evolution of the olfactory pathway in terrestrial malacostracan crustaceans. ### Response:	Crustaceans provide a fascinating opportunity for studying adaptations to a terrestrial lifestyle because within this group, the conquest of land has occurred at least ten times convergently. The evolutionary transition from water to land demands various morphological and physiological adaptations of tissues and organs including the sensory and nervous system. In this review, we aim to compare the brain architecture between selected terrestrial and closely related marine representatives of the crustacean taxa Amphipoda, Isopoda, Brachyura, and Anomala with an emphasis on the elements of the olfactory pathway including receptor molecules. Our comparison of neuroanatomical structures between terrestrial members and their close aquatic relatives suggests that during the convergent evolution of terrestrial life-styles, the elements of the olfactory pathway were subject to different morphological transformations. In terrestrial anomalans (Coenobitidae), the elements of the primary olfactory pathway (antennules and olfactory lobes) are in general considerably enlarged whereas they are smaller in terrestrial brachyurans compared to their aquatic relatives. Studies on the repertoire of receptor molecules in Coenobitidae do not point to specific terrestrial adaptations but suggest that perireceptor events - processes in the receptor environment before the stimuli bind - may play an important role for aerial olfaction in this group. In terrestrial members of amphipods (Amphipoda: Talitridae) as well as of isopods (Isopoda: Oniscidea), however, the antennules and olfactory sensilla (aesthetascs) are largely reduced and miniaturized. Consequently, their primary olfactory processing centers are suggested to have been lost during the evolution of a life on land. Nevertheless, in terrestrial Peracarida, the (second) antennae as well as their associated tritocerebral processing structures are presumed to compensate for this loss or rather considerable reduction of the (deutocerebral) primary olfactory pathway. We conclude that after the evolutionary transition from water to land, it is not trivial for arthropods to establish aerial olfaction. If we consider insects as an ingroup of Crustacea, then the Coenobitidae and Insecta may be seen as the most successful crustacean representatives in this respect.
### Instruction: Please summerize the given abstract to a title ### Response: Methylmercury in caddisflies and mayflies: Influences of water and sediment chemistry ### Response:	Quantifying methylmercury (MeHg) concentrations and uptake at the base of the food web is useful for assessing mercury exposure risk to higher trophic level organisms. Higher MeHg concentrations near the base of the food web may result in more MeHg exposure and accumulation in higher trophic organisms. Here, we analyze MeHg in caddisflies, mayflies, lake water, and sediment collected from two temperate lakes and one brook in Kejimkujik National Park, Nova Scotia, Canada. Overall, caddisfly larvae MeHg (15.38-276.96 ng/g; n = 29) was not significantly correlated with water chemistry. Whereas mayfly naiads MeHg (14.28-166.82 ng/g; n = 31) was positively correlated with water MeHg (rs = 0.43), negatively correlated with pH (rs = -0.49), and positively correlated with dissolved organic carbon (DOC; rs = 0.48). Of the mercury in insect tissues, the %MeHg ranged from 56 to 75 % in caddisfly larvae and 38-47 % in mayfly naiads. MeHg bioaccumulation factors (BAF) varied greatly (water to tissue BAFs = 0.145 × 106-1.054 × 106; sediment to tissue BAFs = 0.017 × 106-0.541 × 106). This study highlights the importance of quantifying variations in MeHg bioaccumulation and BAFs of common aquatic insect bioindicators at the base of complex food webs.
### Instruction: Please summerize the given abstract to a title ### Response: Plant Genotype Shapes the Bacterial Microbiome of Fruits, Leaves, and Soil in Olive Plants. ### Response:	The plant microbiome plays an important role in plant biology, ecology, and evolution. While recent technological developments enabled the characterization of plant-associated microbiota, we still know little about the impact of different biotic and abiotic factors on the diversity and structures of these microbial communities. Here, we characterized the structure of bacterial microbiomes of fruits, leaves, and soil collected from two olive genotypes (Sinopolese and Ottobratica), testing the hypothesis that plant genotype would impact each compartment with a different magnitude. Results show that plant genotype differently influenced the diversity, structure, composition, and co-occurence network at each compartment (fruits, leaves, soil), with a stronger effect on fruits compared to leaves and soil. Thus, plant genotype seems to be an important factor in shaping the structure of plant microbiomes in our system, and can be further explored to gain functional insights leading to improvements in plant productivity, nutrition, and defenses.
### Instruction: Please summerize the given abstract to a title ### Response: Farmed-raised fallow deer (Dama dama L.) carcass characteristics and meat nutritional value. ### Response:	This study analysed carcass features and the chemical composition of semimembranosus (SM) and longissimus thoracis et lumborum (LTL) muscles from farmed-raised fallow deer (Dama dama L.) bucks (n = 8). Mineral contents and fatty acid composition were also determined in the muscles and the fulfilment of the demand for minerals was calculated for adults. Dressing percentage was 55.2%, whereas the proportions of round, shoulder and loin were 38.4%, 15.5% and 14.4%, respectively. The highest content of meat tissue was found in round, followed by loin. There were no differences in moisture, fat, protein or ash contents between SM and LTL muscles, however differences in mineral contents and fatty acid composition were noted and affected the concentration of nutrients. Meat from farmed-raised fallow deer is a good source of iron and copper in the human diet and may be recommended as a part of a healthy diet.
### Instruction: Please summerize the given abstract to a title ### Response: Disease's hidden death toll: Using parasite aggregation patterns to quantify landscape-level host mortality in a wildlife system. ### Response:	Worldwide, infectious diseases represent a major source of mortality in humans and livestock. For wildlife populations, disease-induced mortality is likely even greater, but remains notoriously difficult to estimate - especially for endemic infections. Approaches for quantifying wildlife mortality due to endemic infections have historically been limited by an inability to directly observe wildlife mortality in nature. Here, we address a question that can rarely be answered for endemic pathogens of wildlife: what are the population- and landscape-level effects of infection on host mortality? We combined laboratory experiments, extensive field data, and novel mathematical models to indirectly estimate the magnitude of mortality induced by an endemic, virulent trematode parasite (Ribeiroia ondatrae) on hundreds of amphibian populations spanning four native species. We developed a exible statistical model that uses patterns of aggregation in parasite abundance to infer host mortality. Our model improves on previous approaches for inferring host mortality from parasite abundance data by i.) relaxing restrictive assumptions on the timing of host mortality and sampling, ii.) placing all mortality inference within a Bayesian framework to better quantify uncertainty, and iii.) accommodating data from laboratory experiments and field sampling to allow for estimates and comparisons of mortality within and among host populations. Applying our approach to 301 amphibian populations, we found that trematode infection was associated with an average of between 13 and 40% population-level mortality. For three of the four amphibian species, our models predicted that some populations experienced >90% mortality due to infection, leading to mortality of thousands of amphibian larvae within a pond. At the landscape scale, the total number of amphibians predicted to succumb to infection was driven by a few high mortality sites, with fewer than 20% of sites contributing to greater than 80% of amphibian mortality on the landscape. The mortality estimates in this study provide a rare glimpse into the magnitude of effects that endemic parasites can have on wildlife populations and our theoretical framework for indirectly inferring parasite-induced mortality can be applied to other host-parasite systems to help reveal the hidden death toll of pathogens on wildlife hosts.
### Instruction: Please summerize the given abstract to a title ### Response: Innovative Climate-Smart Agriculture (CSA) Practices in the Smallholder Farming System of South Africa ### Response:	Climate change is easily the most serious human and environmental crisis of the present generation. While awareness of the existence and consequences of climate change is becoming widespread, the specific effects on agriculture and the extent to which innovative climate-smart agriculture (CSA) practices are being adopted remain unclear. This study was conducted in three local municipalities of the Eastern Cape Province of South Africa to determine the patterns of smallholder choice of alternative climate-smart agricultural practices and the factors affecting such choices. It was particularly crucial to investigate why adaptation of CSA practices continues to be lower than expectation despite awareness of their benefits, thus highlighting the social and cultural limits to adaptation to climate change. A total of 210 households were enumerated on the basis of their involvement in crop and livestock farming. The data were analyzed by means of multinomial logistic model, which was applied separately to individual local municipality data sets and a combined provincial data set, and it was revealed that most farmers were not being sufficiently motivated to move from established practices to adopt new CSA practices. The most influential factors in the decision process as to what CSA practice to adopt were primary occupation, farming system type, household size, age and membership of farmer groups. It seemed that asset fixity constrained farmers to continue with existing practices rather than shift to new, more profitable practices, a situation that can be resolved by external intervention by government agencies and/or other entities. Awareness creation targeting remote rural areas as well as institutions to ease farmers’ access to credit and information will contribute to higher adoption rates, which are likely to lead to enhanced food security and standard of living for rural dwellers as their agricultural production and productivity improve.
### Instruction: Please summerize the given abstract to a title ### Response: Alleviating damage of photosystem and oxidative stress from chilling stress with exogenous zeaxanthin in pepper (Capsicum annuum L.) seedlings. ### Response:	As a typical thermophilous vegetable, the growth and yield of peppers are easily limited by chilling conditions. Zeaxanthin, a crucial carotenoid, positively regulates plant abiotic stress responses. Therefore, this study investigated the regulatory mechanisms of zeaxanthin-induced chilling tolerance in peppers. The results indicated that the pretreatment with zeaxanthin effectively alleviated chilling damage in pepper leaves and increased the plant fresh weight and photosynthetic pigment content under chilling stress. Additionally, alterations in photosynthetic chlorophyll fluorescence parameters and chlorophyll fluorescence induction curves after zeaxanthin treatment highlighted the participation of zeaxanthin in improving the photosystem response to chilling stress by heightening the quenching of excess excitation energy and protection of the photosynthetic electron transport system. In chill-stressed plants, zeaxanthin treatment also enhanced antioxidant enzyme activity and transcript expression, and reduced hydrogen peroxide (H2O2) and superoxide anion (O2•-) content, resulting in a decrease in biological membrane damage. Additionally, exogenous zeaxanthin upregulated the expression levels of key genes encoding β-carotene hydroxylase (CaCA1, CaCA2), zeaxanthin epoxidase (CaZEP) and violaxanthin de-epoxidase (CaVDE), and promoted the synthesis of endogenous zeaxanthin during chilling stress. Collectively, exogenous zeaxanthin pretreatment enhances plant tolerance to chilling by improving the photosystem process, increasing oxidation resistance, and inducing alterations in endogenous zeaxanthin metabolism.
### Instruction: Please summerize the given abstract to a title ### Response: Development of an IPM Strategy for Thrips and Tomato spotted wilt virus in Processing Tomatoes in the Central Valley of California ### Response:	Tomato spotted wilt virus (TSWV; species Tomato spotted wilt orthotospovirus; genus Orthotospovirus; family Tospoviridae) is a thrips-transmitted virus that can cause substantial economic losses to many crops, including tomato (Solanum lycopersicum). Since 2005, TSWV emerged as an economically important virus of processing tomatoes in the Central Valley of California, in part due to increased populations of the primary thrips vector, western flower thrips (WFT; Frankliniella occidentalis). To develop an understanding of the epidemiology of TSWV in this region, population densities of WFT and incidence of TSWV were monitored in California's processing tomato transplant-producing greenhouses and associated open fields from 2007 to 2013. Thrips were monitored with yellow sticky cards and in tomato flowers, whereas TSWV incidence was assessed with indicator plants and field surveys for virus symptoms. All thrips identified from processing tomato fields were WFT, and females were three-fold more abundant on sticky cards than males. Symptoms of TSWV infection were observed in all monitored processing tomato fields. Incidences of TSWV ranged from 1 to 20%, with highest incidence found in late-planted fields. There was no single primary inoculum source, and inoculum sources for thrips/TSWV varied depending on the production region. These results allowed us to develop a model for TSWV infection of processing tomatoes in the Central Valley of California. The model predicts that low levels of primary TSWV inoculum are amplified in early-planted tomatoes and other susceptible crops leading to highest levels of infection in later-planted fields, especially those with high thrips populations. Based upon these findings, an integrated pest management (IPM) strategy for TSWV in processing tomatoes in California was devised. This IPM strategy focuses on strategic field placement (identification of high-risk situations), planting TSWV- and thrips-free transplants, planting resistant varieties, monitoring for TSWV symptoms and thrips, roguing infected plants, thrips management targeting early generations, extensive sanitation after harvest, and strategic cropping to avoid overlap with winter bridge crops.
### Instruction: Please summerize the given abstract to a title ### Response: Effects of Temperature and Salinity on Growth, Metabolism and Digestive Enzymes Synthesis of Goniopora columna ### Response:	Climate change is causing dramatic changes in global ocean temperature and salinity, threatening coral survival. Coral growth and metabolism are greatly affected by the temperature, salinity and feeding time of the environment. In order to explore the threats to coral survival caused by climate change, this study will investigate the changes in body composition, digestive enzymes and metabolism of G. columna at different temperatures and salinities. A maximum G. columna growth rate was observed at 25 °C and 30-35 psu salinity. The G. columna could survive in a wide salinity range of 25-40 psu. However, the maximum number and weight of G. columna polyps was determined at 30-35 psu. Furthermore, 30-35 psu salinity at 25 °C led to the best G. columna growth and survival, mainly because of their enhanced nutrient absorption rate, polyp expansion rate, metabolic rate and adaptability. Comparing various salinity-temperature treatment groups, all obtained values for growth, behavior and metabolism were significantly higher (p < 0.05) for 30 psu at 25 °C than other treatment groups resulting in maximum G. columna yield. In addition, the optimal timing of G. columna feeding was assessed by studying changes in body composition and digestive enzymes within 24 h of feeding. The results showed that G. columna has higher protein and protease activity between 6:00 a.m. to 12:00 noon. Therefore, at 25 °C, 30-35 psu and feeding will enhance G. columna growth and survival.
### Instruction: Please summerize the given abstract to a title ### Response: PRODUÇÃO DE CORDEIROS EM PASTAGEM TROPICAL: dos aspectos bioquímicos da pastagem ao comportamento ingestivo animal ### Response:	As pastagens que cobrem uma importante área no território mundial apresentam elevado potencial de produtividade e suas características bioquímicas podem gerar relevante impacto na produção de ruminantes. Porém, poucos trabalhos relatam a concentração de compostos bioquímicos em pastagens tropicais comumente usadas na produção animal. Diante deste fato, o capítulo II desta tese teve como objetivo elucidar e determinar a concentração de taninos condensados e tocoferol, bem como avaliar a produção e os valores nutritivos de espécies forrageiras tropicais normalmente usadas em sistemas de pastejo. Com este estudo foi possível constatar que algumas espécies de gramíneas e leguminosas se destacam não apenas pela sua capacidade de produção de biomassa e qualidade nutricional, mas também pela concentração de compostos bioquímicos, como a gramínea tifton que teve elevada concentração de -tocoferol (202.3 ± 116.5 mg/kg matéria verde, MV). As leguminosas amendoim forrageiro (15.7 ± 5.2 g/kg matéria seca, MS) e feijão guandu (8.7 ± 0.8 g/kg MS) apresentaram boa concentração de taninos condensados, mas o grande destaque foi para a leguminosa nativa pega-pega (66.5 ± 13.8 g/kg MS) que além da alta concentração de taninos, esses apresentaram potencial para atividade biológica (PPF = 60.1 g/kg MS). Aliado as características bioquímicas, as espécies que irão compor o sistema de produção podem influenciar na biologia de vida livre dos nematoides parasitas do trato gastrintestinal (NGI) e no comportamento ingestivo dos animais. O capítulo III e IV avaliam três diferentes sistemas de alimentação de cordeiros em pastagens tropicais. O capítulo III traz como objetivo avaliar a distribuição de larvas infectantes (L3) em diferentes perfis de pastagem tropical (gramíneas e leguminosas) e o impacto da contaminação da pastagem na carga parasitária e desempenho de cordeiros. Onde, a inclusão da leguminosa tropical alterou a concentração de larvas infectantes na pastagem e a contaminação dos animais. No capítulo IV é apresentado o trabalho que teve como objetivo avaliar o comportamento ingestivo de cordeiros em condições de pastejo contínuo submetidos a diferentes sistemas de alimentação com a presença de leguminosa tropical contendo taninos condensados. Apesar da diferença estrutural e concentração de taninos condensados, de modo geral essas características da pastagem não alteraram o comportamento ingestivo dos cordeiros.
### Instruction: Please summerize the given abstract to a title ### Response: Multispecies sustainability ### Response:	Non-technical summaryThe sustainability concept seeks to balance how present and future generations of humans meet their needs. But because nature is viewed only as a resource, sustainability fails to recognize that humans and other living beings depend on each other for their well-being. We therefore argue that true sustainability can only be achieved if the interdependent needs of all species of current and future generations are met, and propose calling this ‘multispecies sustainability’. We explore the concept through visualizations and scenarios, then consider how it might be applied through case studies involving bees and healthy green spaces.Alternate abstract:Technical summaryThe sustainability concept in its current form suffers from reductionism. The common interpretation of ‘meeting the needs of the present without compromising the ability of future generations to meet their own needs’ fails to explicitly recognize their interdependence with needs of current and future non-human generations. Here, we argue that the focus of sustainability on human well-being – a purely utilitarian view of nature as a resource for humanity – limits its conceptual and analytical power, as well as real-world sustainability transformation efforts. We propose a broadened concept of ‘multispecies sustainability’ by acknowledging interdependent needs of multiple species’ current and future generations. We develop the concept in three steps: (1) discussing normative aspects, fundamental principles underlying the concept, and potential visual models, (2) showcasing radically diverging futures emerging from a scenario thought experiment based on the axes sustainable-unsustainable and multispecies-anthropocentric, and (3) exploring how multispecies sustainability can be applied to research and policy-making through two case studies (a multispecies stakeholder framework and the Healthy Urban Microbiome Initiative).Alternate abstract:Social media summaryA new multispecies definition of sustainability recognizes that living beings and their wellbeing are interdependent.
### Instruction: Please summerize the given abstract to a title ### Response: Bacterial diversity of bat guano from Cabalyorisa Cave, Mabini, Pangasinan, Philippines: A first report on the metagenome of Philippine bat guano ### Response:	Bats are highly diverse and ecologically valuable mammals. They serve as host to bacteria, viruses and fungi that are either beneficial or harmful to its colony as well as to other groups of cave organisms. The bacterial diversity of two bat guano samples, C1 and C2, from Cabalyorisa Cave, Mabini, Pangasinan, Philippines were investigated using 16S rRNA gene amplicon sequencing. V3-V4 hypervariable regions were amplified and then sequenced using Illumina MiSeq 250 PE system. Reads were processed using Mothur and QIIME pipelines and assigned 12,345 OTUs for C1 and 5,408 OTUs for C2. The most dominant OTUs in C1 belong to the Proteobacteria (61.7%), Actinobacteria (19.4%), Bacteroidetes (4.2%), Firmicutes (2.7%), Chloroflexi (2.5%), candidate phylum TM7 (2.3%) and Planctomycetes (1.9%) while Proteobacteria (61.7%) and Actinobacteria (34.9%) dominated C2. Large proportion of sequence reads mainly associated with unclassified bacteria indicated possible occurrence of novel bacteria in both samples. XRF spectrophotometric analyses of C1 and C2 guano revealed significant differences in the composition of both major and trace elements. C1 guano recorded high levels of Si, Fe, Mg, Al, Mn, Ti and Cu while C2 samples registered high concentrations of Ca, P, S, Zn and Cr. Community structure of the samples were compared with other published community profiling studies from Finland (SRR868695), Meghalaya, Northeast India (SRR1793374) and Maharashtra State, India (CGS). Core microbiome among samples were determined for comparison. Variations were observed among previously studied guano samples and the Cabalyorisa Cave samples were attributed to either bat sources or age of the guano. This is the first study on bacterial diversity of guano in the Philippines through high-throughput sequencing.
### Instruction: Please summerize the given abstract to a title ### Response: Human-Monkey Conflicts in Sri Lanka: A Comment on Dittus et al., 2019. ### Response:	Dittus et al. [Folia Primatologica 2019;90: 89-108] discuss conflicts in Sri Lanka between people and 4 subspecies of purple-faced langurs, 3 subspecies of toque macaques and a single grey langur subspecies. All of these subspecies are endemic and also listed by the IUCN as endangered or threatened with extinction due to extensive deforestation. Nevertheless, in order to mitigate conflicts with macaques, the above article recommended buffer zones that "should be at least 100-200 m wide, devoid of trees, shrubs and food sources: pasture could serve this purpose" [Dittus et al., 2019, p. 100]. This recommendation is presented without an explicit statement that buffer zones should not be carved out of existing primate habitats. Therefore, it could be misused by corrupt politicians and timber contractors to justify deforestation, even by expanding existing pastures that do not meet the width specifications prescribed by the article. These actions could undermine the survival of both langurs that rely exclusively on a vegetarian diet. Therefore, in my opinion, buffer zones as proposed by Dittus et al. [2019] are not a valid recommendation to mitigate human-monkey conflicts (HMCs) in Sri Lanka. I consider several other statements in the article also to have questionable relevance to mitigating HMCs in Sri Lanka. However, I discuss a commercially viable activity reported by Dittus et al. [2019] that could be used to mitigate HMCs and also promote monkey conservation in Sri Lanka. It derives from a time-tested and, therefore, successful business enterprise based on peaceful coexistence with monkeys that the authors of that article have undertaken at their field site in Polonnaruwa. However, they do not discuss the enterprise's proven ability to promote peaceful coexistence with monkeys.Therefore, I explain how the enterprise could help communities throughout Sri Lanka to accrue financial benefits, by practicing peaceful coexistence with all monkey subspecies and promoting their conservation at the same time. This business model has the potential to strengthen Sri Lanka's efforts to protect its unique contribution to global biological diversity from extinction.
### Instruction: Please summerize the given abstract to a title ### Response: Chimpanzees (Pan troglodytes) in savanna landscapes. ### Response:	Chimpanzees (Pan troglodytes) are the only great apes that inhabit hot, dry, and open savannas. We review the environmental pressures of savannas on chimpanzees, such as food and water scarcity, and the evidence for chimpanzees' behavioral responses to these landscapes. In our analysis, savannas were generally associated with low chimpanzee population densities and large home ranges. In addition, thermoregulatory behaviors that likely reduce hyperthermia risk, such as cave use, were frequently observed in the hottest and driest savanna landscapes. We hypothesize that such responses are evidence of a "savanna landscape effect" in chimpanzees and offer pathways for future research to understand its evolutionary processes and mechanisms. We conclude by discussing the significance of research on savanna chimpanzees to modeling the evolution of early hominin traits and informing conservation programs for these endangered apes.
### Instruction: Please summerize the given abstract to a title ### Response: The spleen morphophysiology of fruit bats ### Response:	Spleen is one of the important lymphoid organs with wide variations of morphological and physiological functions according to species. Morphology and function of the spleen in bats, which are hosts to several viral strains without exhibiting clinical symptoms, remain to be fully elucidated. This study aims to examine the spleen morphology of fruit bats associated with their physiological functions. Spleen histological observations were performed in three fruit bats species: Cynopterus titthaecheilus (n = 9), Rousettus leschenaultii (n = 3) and Pteropus vampyrus (n = 3). The spleens of these fruit bats were surrounded by a thin capsule. Red pulp consisted of splenic cord and wide vascular space filled with blood. Ellipsoids in all three studied species were found numerously and adjacent to one another forming macrophages aggregates. White pulp consisted of periarteriolar lymphoid sheaths (PALS), lymphoid follicles and marginal zone. The lymphoid follicle contained a germinal centre and a tingible body macrophage that might reflect an active immune system. The marginal zone was prominent and well developed. This study reports some differences in spleen structure of fruit bats compared to other bat species previously reported and discusses possible physiological implications of the spleen based on its morphology.
### Instruction: Please summerize the given abstract to a title ### Response: A record of fallout 239Pu and 240Pu at World Heritage Bathurst Harbour, Tasmania, Australia ### Response:	This study presents the first measurements of anthropogenic plutonium (239Pu and 240Pu) concentrations and atom ratios (240Pu/239Pu) for Tasmania, in sediment collected from Bathurst Harbour, in the Tasmanian Wilderness World Heritage Area, Australia. The weighted mean 240Pu/239Pu atom ratio measured at this site was 0.172 ± 0.007 which is consistent with published data from mainland Australia and global and Southern Hemisphere averages. The 240Pu/239Pu atom ratios ranged between 0.11 and 0.21 with the earliest recorded 240Pu/239Pu atom ratios being the lowest, suggesting an influence of low atom ratio fallout from nuclear testing in Australia. Post-moratorium fallout 240Pu/239Pu atom ratios were consistent with other records. Lead-210 (210Pb) sediment chronologies indicate sediment accumulation rates have increased since the early part of the 19th century at this location.
### Instruction: Please summerize the given abstract to a title ### Response: Exploring the source, migration and environmental risk of perfluoroalkyl acids and novel alternatives in groundwater beneath fluorochemical industries along the Yangtze River, China ### Response:	The widely used legacy perfluoroalkyl acids (PFAAs) with serious environmental hazards are gradually restricted and being replaced by novel alternatives. Here, for an efficient control of emerging environmental risks in groundwater, we systematically studied the source apportionment, spatial attenuation, composition change and risk zoning of 12 PFAAs and five novel alternatives within a region of ~200â¯km2 around a mega fluorochemical industrial park (FIP) along the Yangtze River, and in-depth explored potential association between groundwater and soil pollution as well as influencing factors on contaminant migration and risk distribution in the aquifer. Short-chain PFAAs and novel alternatives together accounted for over 70% in groundwater, revealing their prevalence in replacing legacy perfluorooctanoic acid (PFOA) and perfluorooctane sulfonate (PFOS). Novel alternatives for PFOA were mainly hexafluoropropylene oxide dimer acid (GenX) and hexafluoropropylene oxide trimer acid (HFPO-TA), while those for PFOS were 6:2 chlorinated polyfluorinated ether sulfonic acid (6:2 Cl-PFESA) and 6:2 fluorotelomer sulfonic acid (6:2 FTS). PFAAs (maximum total: 1339â¯ng/L) and novel alternatives (maximum total: 208â¯ng/L) in groundwater were mostly derived from the FIP, and exhibited an exponentially decreasing trend with increasing distance. Compared with those in groundwater, more diverse sources of PFAAs and novel alternatives in surface soil were identified. The transport of these chemicals may be retarded by clayed surface soils with high organic matter contents. High aquifer permeability could generally promote the dilution and migration of PFAAs and novel alternatives in groundwater, as well as reduce the differences in their spatial distribution. Shorter-chain components with smaller molecules and higher hydrophilicity exhibited greater migration capacities in the aquifer. In addition, different levels of health risk from PFOS and PFOA were zoned based on drinking groundwater, and high risks tended to be distributed in areas with relatively poor aquifer water yield due to higher pollutant accumulation.
### Instruction: Please summerize the given abstract to a title ### Response: Skillful prediction of tropical Pacific fisheries provided by Atlantic Niños ### Response:	Tropical Pacific upwelling-dependent ecosystems are the most productive and variable worldwide, mainly due to the influence of El Niño Southern Oscillation (ENSO). ENSO can be forecasted seasons ahead thanks to assorted climate precursors (local-Pacific processes, pantropical interactions). However, owing to observational data scarcity and bias-related issues in earth system models, little is known about the importance of these precursors for marine ecosystem prediction. With recently released reanalysis-nudged global marine ecosystem simulations, these constraints can be sidestepped, allowing full examination of tropical Pacific ecosystem predictability. By complementing historical fishing records with marine ecosystem model data, we show herein that equatorial Atlantic Sea Surface Temperatures (SSTs) constitute a superlative predictability source for tropical Pacific marine yields, which can be forecasted over large-scale areas up to 2 years in advance. A detailed physical-biological mechanism is proposed whereby Atlantic SSTs modulate upwelling of nutrient-rich waters in the tropical Pacific, leading to a bottom-up propagation of the climate-related signal across the marine food web. Our results represent historical and near-future climate conditions and provide a useful springboard for implementing a marine ecosystem prediction system in the tropical Pacific.
### Instruction: Please summerize the given abstract to a title ### Response: Quantification of antimicrobial use in Fijian livestock farms ### Response:	Antimicrobial resistance (AMR) is a major threat to humans and animals globally. Antimicrobial stewardship has been acknowledged as a primary strategy to tackle AMR. An important first step for antimicrobial stewardship is to quantify antimicrobial use (AMU). In Fiji, there are currently no data on AMU in livestock farms. This study aimed to quantify AMU in different livestock enterprises (beef, dairy, broiler, and layer) and farming systems (backyard, semi-commercial and commercial) in Central and Western divisions of Viti Levu, Fiji. A survey with 210 livestock farmers and 26 managers representing 276 enterprises was conducted between May and September 2019. The difference in AMU between different livestock enterprises and farming systems was investigated using ANOVA. In Fiji, the estimated annual antibiotic use in livestock was lower than the global average (44 compared with 118 mg/PCU). However, this use was concentrated in 56% of participant farms (the remaining 44% did not use antimicrobials). Total estimated quarterly anthelmintic use (20,797 mg) was not affected by farming systems but was highest (P < 0.001) in dairy enterprises (24,120 mg) and lowest in broiler enterprises (4 mg). Quarterly antibiotic use was different between the enterprises regardless of the metrics used to quantify the use (P < 0.05). Total estimated quarterly mg/PCU of antibiotic use was highest (P < 0.001) in broiler enterprises (12.4 mg/PCU) and lowest in beef enterprises (0.2 mg/PCU). For all other ESVAC metrics, total estimated antibiotic use was higher in poultry and lower in cattle enterprises. Backyard systems used less antibiotics (total mg) than commercial systems, but for other metrics, the trend was reversed. The use of both antibiotics and anthelmintics (rather than antibiotics or anthelmintics alone, or no AMU) was associated with dairy enterprises (Χ(2) = 123, P < 0.001). Further studies should be conducted to quantify and evaluate the drivers of AMU in Fijian livestock farms. In addition, differences in AMU between different enterprises and farming systems suggest that strategies to reduce AMU should be tailored to specific settings.
### Instruction: Please summerize the given abstract to a title ### Response: Eggshell color in brown-egg laying hens — a review ### Response:	The major pigment in eggshells of brown-egg laying hens is protoporphyrin IX, but traces of biliverdin and its zinc chelates are also present. The pigment appears to be synthesized in the shell gland. The protoporphyrin IX synthetic pathway is well defined, but precisely where and how it is synthesized in the shell gland of the brown-egg laying hen is still ambiguous. The pigment is deposited onto all shell layers including the shell membranes, but most of it is concentrated in the outermost layer of the calcareous shell and in the cuticle. Recently, the genes that are involved in pigment synthesis have been identified, but the genetic control of synthesis and deposition of brown pigment in the commercial laying hen is not fully understood. The brown coloration of the shell is an important shell quality parameter and has a positive influence on consumer preference. The extent of pigment deposition is influenced by the housing system, hen age, hen strain, diet, stressors, and certain diseases such as infectious bronchitis. In this article, the physiological and biochemical characteristics of the brown pigment in commercial brown-egg layers are reviewed in relation to its various functions in the poultry industry.
### Instruction: Please summerize the given abstract to a title ### Response: Isolation and characterization of Acanthamoeba spp. from air-conditioners in Kuala Lumpur, Malaysia ### Response:	During a study on the quality of the indoor environment, Acanthamoeba spp. were detected in 20 out of 87 dust samples collected from air-conditioners installed in a four-story campus building located in Kuala Lumpur, Malaysia. Twenty-one cloned Acanthamoeba isolates designated as IMU1 to IMU21 were established from the positive primary cultures. Five species were identified from the 16 isolates according to the morphological criteria of Pussard and Pons; i.e. A. castellanii, A. culbertsoni, A. griffini, A. hatchetti and A. polyphaga. Species identities for the remaining five isolates (IMU4, IMU5, IMU15, IMU20 and IMU21), however, could not be determined morphologically. At genotypic characterization, these isolates were placed into T3 (IMU14); T5 (IMU16 and IMU17) and T4 (all the remaining isolates). To predict the potential pathogenicity of these Acanthamoeba isolates, thermo- and osmotolerance tests were employed; many isolates were predicted as potential human pathogens based on the outcome of these tests. This is the first time potentially pathogenic Acanthamoeba have been isolated from air-conditioners in Malaysia.
### Instruction: Please summerize the given abstract to a title ### Response: The Effects of Exogenous Salicylic Acid on Endogenous Phytohormone Status in Hordeum vulgare L. under Salt Stress. ### Response:	Acclimation to salt stress in plants is regulated by complex signaling pathways involving endogenous phytohormones. The signaling role of salicylic acid (SA) in regulating crosstalk between endogenous plant growth regulators' levels was investigated in barley (Hordeum vulgare L. 'Ince'; 2n = 14) leaves and roots under salt stress. Salinity (150 and 300 mM NaCl) markedly reduced leaf relative water content (RWC), growth parameters, and leaf water potential (LWP), but increased proline levels in both vegetative organs. Exogenous SA treatment did not significantly affect salt-induced negative effects on RWC, LWP, and growth parameters but increased the leaf proline content of plants under 150 mM salt stress by 23.1%, suggesting that SA enhances the accumulation of proline, which acts as a compatible solute that helps preserve the leaf's water status under salt stress. Changes in endogenous phytohormone levels were also investigated to identify agents that may be involved in responses to increased salinity and exogenous SA. Salt stress strongly affected endogenous cytokinin (CK) levels in both vegetative organs, increasing the concentrations of CK free bases, ribosides, and nucleotides. Indole-3-acetic acid (IAA, auxin) levels were largely unaffected by salinity alone, especially in barley leaves, but SA strongly increased IAA levels in leaves at high salt concentration and suppressed salinity-induced reductions in IAA levels in roots. Salt stress also significantly increased abscisic acid (ABA) and ethylene levels; the magnitude of this increase was reduced by treatment with exogenous SA. Both salinity and SA treatment reduced jasmonic acid (JA) levels at 300 mM NaCl but had little effect at 150 mM NaCl, especially in leaves. These results indicate that under high salinity, SA has antagonistic effects on levels of ABA, JA, ethylene, and most CKs, as well as basic morphological and physiological parameters, but has a synergistic effect on IAA, which was well exhibited by principal component analysis (PCA).
### Instruction: Please summerize the given abstract to a title ### Response: Mitogenomic analysis of diversity of key whitefly pests in Kenya and its implication to their sustainable management ### Response:	Whiteflies (Hemiptera: Aleyrodidae) are devastating agricultural pests of economic importance vectoring pathogenic plant viruses. Knowledge on their diversity and distribution in Kenya is scanty, limiting development of effective sustainable management strategies. The present study is aimed at identifying whitefly pest species present in Kenya across different agroecological zones and establish predictive models for the most abundant species in Africa. Whiteflies were sampled in Kenya from key crops known to be severely infested and identified using 16S rRNA markers and complete mitochondrial genomes. Four whitefly species were identified: Aleyrodes proletella, Aleurodicus dispersus, Bemisia afer and Trialeurodes vaporariorum, the latter being the most dominant species across all the agroecology. The assembly of complete mitogenomes and comparative analysis of all 13 protein coding genes confirmed the identities of the four species. Furthermore, prediction spatial models indicated high climatic suitability of T. vaporariorum in Africa, Europe, Central America, parts of Southern America, parts of Australia, New Zealand and Asia. Consequently, our findings provide information to guide biosecurity agencies on protocols to be adopted for precise identification of pest whitefly species in Kenya to serve as an early warning tool against T. vaporariorum invasion into unaffected areas and guide appropriate decision-making on their management.
### Instruction: Please summerize the given abstract to a title ### Response: Symbiosis and the Anthropocene ### Response:	Recent human activity has profoundly transformed Earth biomes on a scale and at rates that are unprecedented. Given the central role of symbioses in ecosystem processes, functions, and services throughout the Earth biosphere, the impacts of human-driven change on symbioses are critical to understand. Symbioses are not merely collections of organisms, but co-evolved partners that arise from the synergistic combination and action of different genetic programs. They function with varying degrees of permanence and selection as emergent units with substantial potential for combinatorial and evolutionary innovation in both structure and function. Following an articulation of operational definitions of symbiosis and related concepts and characteristics of the Anthropocene, we outline a basic typology of anthropogenic change (AC) and a conceptual framework for how AC might mechanistically impact symbioses with select case examples to highlight our perspective. We discuss surprising connections between symbiosis and the Anthropocene, suggesting ways in which new symbioses could arise due to AC, how symbioses could be agents of ecosystem change, and how symbioses, broadly defined, of humans and “farmed” organisms may have launched the Anthropocene. We conclude with reflections on the robustness of symbioses to AC and our perspective on the importance of symbioses as ecosystem keystones and the need to tackle anthropogenic challenges as wise and humble stewards embedded within the system.
### Instruction: Please summerize the given abstract to a title ### Response: Vegetation traits of pre-Alpine grasslands in southern Germany ### Response:	The data set contains information on aboveground vegetation traits of > 100 georeferenced locations within ten temperate pre-Alpine grassland plots in southern Germany. The grasslands were sampled in April 2018 for the following traits: bulk canopy height; weight of fresh and dry biomass; dry weight percentage of the plant functional types (PFT) non-green vegetation, legumes, non-leguminous forbs, and graminoids; total green area index (GAI) and PFT-specific GAI; plant water content; plant carbon and nitrogen content (community values and PFT-specific values); as well as leaf mass per area (LMA) of PFT. In addition, a species specific inventory of the plots was conducted in June 2020 and provides plot-level information on grassland type and plant species composition. The data set was obtained within the framework of the SUSALPS project ("Sustainable use of alpine and pre-alpine grassland soils in a changing climate"; https://www.susalps.de/ ) to provide in-situ data for the calibration and validation of remote sensing based models to estimate grassland traits.
### Instruction: Please summerize the given abstract to a title ### Response: A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters - dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data. ### Response:	Data in this article provides detailed information on the microbial dynamics and degradation performances in two full-scale anaerobic digesters operated in parallel for 476 days. One of them was kept at 35 °C for the whole experiment, while the other was submitted to sub-mesophilic (25 °C) conditions between days 123 and 373. Sludge samples were collected from both digesters at days 0, 80, 177, 218, 281, 353, and 462. The provided data include the operational conditions of the digesters and the characterization of the sludge samples at the physicochemical level, indicative of the digesters' degradation performance. It also includes the characterization of the sludge samples at the multiomics level (16S rRNA gene sequencing, metagenomics, and metabolomics profiling), to decipher the changes in the microbial structure and molecular activity. The 16S rDNA gene sequencing, metagenomics, and metabolomics data were generated using an IonTorrent PGM sequencer, an Illumina NextSeq 500 sequencer, and LTQ-Orbitrap XL mass spectrometer respectively. The 16S rDNA gene raw data and the metagenomics data have been deposited in the BioProject PRJEB49115, in the ENA database (https://www.ebi.ac.uk/ena/browser/view/PRJEB49115). The metabolomics data has been deposited at the Metabolomics Workbench, with study id ST002004 (DOI: 10.21228/M8JM6B). The data can be used as a source for comparisons with other studies working with data from full-scale anaerobic digesters, especially for those investigating the effect of the temperature modification. The data is associated with the research article "Metataxonomics, metagenomics, and metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters" (Puig-Castellví et al [1]).
### Instruction: Please summerize the given abstract to a title ### Response: Analysis of Microbial Water Contamination, Soil Microbial Community Structure, and Soil Respiration in a Collaborative First-Year Students as Scholars Program (SAS) ### Response:	The persistence of college students in STEM majors after their first-year of college is approximately 50%, with underrepresented populations displaying even higher rates of departure. For many undergraduates, their first-year in college is defined by large class sizes, poor access to research faculty, and minimal standing in communities of scholars. Pepperdine University and Whittier College, funded by a National Science Foundation award to Improve Undergraduate Stem Education (NSF IUSE), partnered in the development of first-year classes specifically geared to improve student persistence in STEM and academic success. This Students as Scholars Program (SAS) engaged first-year undergraduates in scholarly efforts during their first semester in college with a careful approach to original research design and mentoring by both faculty and upperclassmen experienced in research. Courses began by introducing hypothesis formulation and experimental design partnered with the scientific focus of each course (ecological, biochemical, microbiological). Students split into research teams, explored the primary literature, designed research projects, and executed experiments over a 6–7 week period, collecting, analyzing, and interpreting data. Microbiology-specific projects included partnerships with local park managers to assess water quality and microbial coliform contamination at specified locations in a coastal watershed. In addition, students explored the impact of soil salinity on microbial community structure. Analysis of these samples included next-generation sequencing and microbiome compositional analysis via collaboration with students from an upper division microbiology course. This cross-course collaboration facilitated additional student mentoring opportunities between upperclassmen and first-year students. This approach provided first-year students an introduction to the analysis of complex data sets using bioinformatics and statistically reliable gas-exchange replicates. Assessment of the impact of this program revealed students to view the research as challenging, but confidence building as they take their first steps as biology majors. In addition, the direct mentorship of first-year students by upperclassmen and faculty was viewed positively by students. Ongoing assessments have revealed SAS participants to display a 15% increased persistence rate in STEM fields when compared to non-SAS biology majors.
### Instruction: Please summerize the given abstract to a title ### Response: Growsafe: A Chemical Method To Deactivate Cultivated Microorganisms Using Low-Cost Kitchen Supplies ### Response:	One limitation to engaging K–12 students and the public with microorganisms is the inability to cultivate and dispose of bacterial and fungal samples safely without expensive equipment or services. This barrier has been amplified with remote learning modalities and laboratory closures driven by safety precautions due to the COVID-19 pandemic. At-home lab kits are being used to bring hands-on experience in microorganism cultivation to students learning remotely, but these kits often fail to take into full consideration the safety aspects or the costs associated with microorganism disposal, limiting which experiments can be performed at home. Here, we outline a method that makes cultivating and deactivating microorganisms accessible to the public through low-cost and readily available equipment. This method reduces exposure to microorganisms by forgoing the need to open petri plates for chemical deactivation with sanitizing reagents. This technique may benefit remote K–12 and postsecondary students, students wishing to get hands-on microbiology research experience, and members of the public interested in cultivating microorganisms to contribute to citizen science efforts or for creative art applications.
### Instruction: Please summerize the given abstract to a title ### Response: Meta-Analysis and Systematic Review of the Thermal Stress Response: Gallus gallus domesticus Show Low Immune Responses During Heat Stress ### Response:	Heat stress, which affects broiler growth performance and immunity, is a major concern in the poultry industry. This meta-analysis aimed to demonstrate the significant effect of heat stress on broiler mass gain and immunoglobulin levels, which regulates the mortality rate of broilers. A total of 2,585 studies were downloaded from PubMed, Web of Science, and Google Scholar from January 1, 2015, to September 1, 2021. Eventually, 28 studies were selected based on specific criteria. The results for body mass gain, total mass of immune organs (thymus, spleen, and bursa of Fabricius), immunoglobulin (IgA, IgG, and IgM) levels, and mortality rate were analyzed using odds ratio or the random-effects model (REM) at a confidence interval (CI) of 95%. Compared to the control, heat stress significantly decreased body mass gain (10 trials: REM = 1.35, 95% CI: 1.21, 1.50). Compared to that in the control, heat stress significantly increased immunoglobulin levels: IgA (7 trials: REM = 1.69, 95% CI: 0.90, 3.16), IgG (6 trials: REM = 1.24, 95% CI: 0.85, 1.81), IgM (8 trials: REM = 0.69, 95% CI: 0.44, 1.08), and heat stress also increased the broiler mortality rate (6 trials: REM = 0.06, 95% CI: 0.01, 0.27). However, there were no significant changes in the immune organs between the control and heat-stressed groups. In conclusion, heat stress remarkably alters the mass gain and immunoglobulin levels of broilers, which may be a cause of the high mortality rate.
### Instruction: Please summerize the given abstract to a title ### Response: Determination of chemical changes in Isatis indigotica seeds carried after Chinese first spaceship with FTIR and 2D-IR correlation spectroscopy ### Response:	Spaceflight represents a complex environmental condition. Space mutagenesis breeding has achieved and marked certain results over the years. This method was employed in our previous studies in order to obtain improved germplasm of Isatis indigotica. This study is to determine the chemical changes in I. indigotica seeds carried after Chinese first spaceship (Shenzhou I). Fourier transform infrared (FTIR), second derivative and two-dimensional infrared (2DIR) correlation spectroscopy were used in analysis. Not much differences between the two spectra were found except the peaks in the range of 1500–1200 cm(−)(1) which was about 7 cm(−)(1) different and indicated the absorption could be initialed from different bonds. SP4 showed different derivative compared with C4 in the second derivative spectra of 1200–800 cm(−)(1). The stronger signal of 2DIR in SP4 indicated the protein content of the seed was changed after spaceflight. It is concluded that spaceflight provided an extreme condition that caused changes of chemical properties in I. indigotica.
### Instruction: Please summerize the given abstract to a title ### Response: Utilização Do Método Acústico Passivo Para Avaliar Sons De Peixes Marinhos E Continentais Em Ecossistemas Tropicais Brasileiros ### Response:	A comunicação está omnipresente nos animais aquáticos, principalmente naqueles capazes de produzir diferentes tipos de sinais acústicos. Esta cacofonia, denominada paisagem acústica, vem permitindo avaliar a distribuição e comportamentos dos organismos sonoros, simplesmente registrando e avaliando os sons por eles produzidos utilizando o método acústico passivo. O objetivo deste trabalho foi usar metodologias inovadoras de pesquisa não invasiva, como a acústica passiva, na coleta e análise de dados acústicos em ambientes aquáticos continentais e marinhos, para fins de monitoramento, conservação e gestão de recursos vivos destes ambientes, principalmente peixes. No que se refere ao ambiente marinho, foram avaliadas as paisagens acústicas de duas áreas de recifes costeiros no litoral sul do Estado de Pernambuco, sendo uma em Porto de Galinhas, área já impactada pelo livre acesso para uso turístico e pesqueiro, e outra em Tamandaré, no interior da Área de Proteção Ambiental Costa dos Corais, na Zona de Preservação da Vida Marinha, utilizada apenas para pesquisa. Em ambiente de água doce, avaliaram-se a produção de sons de cinco espécies de importância comercial da ordem Characiformes no Rio Madeira, sul da Amazônia. Nos experimentos marinhos, Os resultados dos experimentos marinhos indicaram que os sons nas duas áreas de estudo ocorreram principalmente no final da tarde e à noite, onde foram detectados seis coros de peixes recorrentes, com distribuição da banda de frequência entre 200 e 2000 Hz, sem sobreposição e com diferentes características acústicas entre as espécies. Os coros apresentara alta energia em mar aberto, após a última linha de recife na área protegida de Tamandaré (~ 130 dB re1Pa2 Hz-1). No entanto, os coros de peixes apresentou baixos níveis de energia em Porto de Galinhas, com uma diferença de 30 dB re1Pa2 Hz-1. Também foram detectados sons característicos de invertebrados, com bandas de frequências dominantes de 2 e 3 kHz, além de ruídos produzidos por diferentes tipos de embarcações pesqueiras, lanchas recreativas e navios, que podem mascarra e interferir na comunicação dos peixes. O monitoramento da complexa paisagem acústica encontrada em Tamandaré durante o verão mostrou uma constante sobreposição temporal dos coros produzidos pelos peixes no final da tarde. A ocorrência dos coros esteve relacionada com as diferentes fases lunares, influenciando de forma distinta o tempo de início e de detecção, como variações principalmente durante a lua de quarto crescente. A influência lunar também ocorreu nos ruídos de embarcações detectados, com embarcações pesqueiras apresentando registros principalmente no início da manhã, nas luas gibosa crescente e minguante, com bandas de frequência <200 Hz e com elevados picos de energia facilmente distinguíveis. Em águas continentais, a acústica passiva permitiu avaliar sons de cinco characiformes de importância comercial (Potamorhina latior, P. altamazonica, Psectrogaster amazonica, Semaprochilodus insignis e Prochilodus nigricans). Os sons apresentaram diferenças entre gêneros e mesmo entre as espécies, mostrando a especificidade dos sons. Gravações subaquáticas em áreas de confluências de rios na bacia do Madeira durante o período reprodutivo nas águas altas (janeiro e fevereiro), indicaram que P. latior e S. insignis produziram sons semelhantes, utilizando o mesmo nicho ecológico no rio Guaporé. P. latior preferiu as confluências do rio e foi a principal espécie produtora de som durante o período de estudo, sendo encontrada na maioria dos locais avaliados. Foi observado que apenas os machos dessas espécies têm um músculo sônico extrínseco associado às primeiras costelas e fixado em uma aponeurose que rodeia a bexiga natatoria. Esses resultados podem ajudar a identificar e diferenciar sons subaquáticos, monitorando e avaliando áreas de ocorrência, indicando a utilização do método como ferramenta complementar para o monitoramento de populações de organismo aquáticos, principalmente espécies de peixes marinhos e de água doce.
### Instruction: Please summerize the given abstract to a title ### Response: Antimicrobial Usage in Smallholder Poultry Production in Nigeria ### Response:	The indiscriminate use of antimicrobials in livestock production is of increasing concern due to the threat of antimicrobial resistance in both humans and animals. Much emphasis has been placed on intensively managed poultry production systems, which routinely use antimicrobials as against smallholder poultry production systems (SPPS). Therefore, this study investigated the use of antimicrobials among smallholder poultry farmers in Nigeria, and compared the prevalence of antimicrobial drug use against the practice of ethnoveterinary medicine (EVM). A cross-sectional study was conducted in five states (agroecologies) of Nigeria using structured questionnaires administered on a total of 350 farmers. The practice of EVM was prevalent among most of the farmers (39%). The western method (pharmaceuticals) was practiced by a large proportion of farmers (60%), either solely (25%) or in combination with EVM (35%). Antimicrobials were used primarily for treatment and prevention of diseases (78%). Semi-scavenging system of production had the highest proportion (49%) of farmers using antimicrobials, compared to semi-intensive (37%) and scavenging (14%) systems. Gender (χ(2) = 9.30, p = 0.01), and location (χ(2) = 216.86, p ≤ 0.001), influenced farmers' choice of methods for bird treatment. Education (odds ratio [OR] odds ratio [OR] 3.06, 95% CI 2.10–4.44), income (OR 1.99, 95% CI 1.10–3.59) and management system (OR 1.97, CI% 1.1–3.45) were most associated with antimicrobial use. Critically important antibiotics, with lower to higher risk of antimicrobial resistance, were used by farmers (40%). These findings showed the indiscriminate use of antimicrobials by farmers and the potential risk of antimicrobial resistance within the SPPS in Nigeria.
### Instruction: Please summerize the given abstract to a title ### Response: Immunology in wild nonmodel rodents: an ecological context for studies of health and disease ### Response:	Transcriptomic methods are set to revolutionize the study of the immune system in naturally occurring nonmodel organisms. With this in mind, the present article focuses on ways in which the use of ‘nonmodel’ rodents (not the familiar laboratory species) can advance studies into the classical, but ever relevant, epidemiologic triad of immune defence, infectious disease and environment. For example, naturally occurring rodents are an interesting system in which to study the environmental stimuli that drive the development and homeostasis of the immune system and, by extension, to identify where these stimuli are altered in anthropogenic environments leading to the formation of immunopathological phenotypes. Measurement of immune expression may help define individual heterogeneity in infectious disease susceptibility and transmission and facilitate our understanding of infection dynamics and risk in the natural environment; furthermore, it may provide a means of surveillance that can filter individuals carrying previously unknown acute infections of potential ecological or zoonotic importance. Finally, the study of immunology in wild animals may reveal interactions within the immune system and between immunity and other organismal traits that are not observable under restricted laboratory conditions. Potentiating much of this is the possibility of combining gene expression profiles with analytical tools derived from ecology and systems biology to reverse engineer interaction networks between immune responses, other organismal traits and the environment (including symbiont exposures), revealing regulatory architecture. Such holistic studies promise to link ecology, epidemiology and immunology in natural systems in a unified approach that can illuminate important problems relevant to human health and animal welfare and production.
### Instruction: Please summerize the given abstract to a title ### Response: Anatomical study of the female reproductive system and bacteriome of Diaphorina citri Kuwayama, (Insecta: Hemiptera, Liviidae) using micro-computed tomography. ### Response:	Huanglongbing (HLB) (citrus greening disease) is one of the most serious bacterial diseases of citrus. It is caused by (1) Candidatus Liberibacter africanus, transmitted by Trioza erytreae and (2) C.L. asiaticus and C.L. americanus, transmitted by Diaphorina citri. As part of a multidisciplinary project on D. citri (www.citrusgreening.org), we made a detailed study, using micro-computed tomography, of the female abdominal terminalia, reproductive system (ovaries, accessory glands, spermatheca, colleterial (= cement) gland, connecting ducts, and ovipositor) and bacteriome, which we present here. New terms and structures are introduced and described, particularly concerning the spermatheca, ovipositor and bacteriome. The quality of images and bacteriome reconstructions are comparable, or clearer, than those previously published using a synchrotron or fluorescence in situ hybridisation (FISH). This study: reviews knowledge of the female reproductive system and bacteriome organ in D. citri; represents the first detailed morphological study of D. citri to use micro-CT; and extensively revises existing morphological information relevant to psylloids, hemipterans and insects in general. High quality images and supplementary videos represent a significant advance in knowledge of psylloid anatomy and are useful tools for future research and as educational aids.
### Instruction: Please summerize the given abstract to a title ### Response: Parentage-based tagging combined with genetic stock identification is a cost-effective and viable replacement for coded-wire tagging in large-scale assessments of Canadian salmon fisheries ### Response:	I present responses to arguments offered by coded-wire tag (CWT) proponents supposedly limiting the effectiveness of a genetic stock identification (GSI) and parentage-based tagging (PBT) fisheries assessment method I demonstrate that a GSI-PBT-based assessment method is cheaper, more powerful, and more informative than traditional CWTs Implementation of a GSI-PBT for Canadian fisheries assessment can provide information at least equivalent to that derived from the current CWT assessment program Adoption of a GSI-PBT assessment program will facilitate mass-marking of Chinook salmon (Oncorhynchus tshawytscha) in British Columbia, has allowed for genetic tagging during the COVID pandemic while few Chinook salmon juveniles were marked with CWTs, has allowed for tagging of approximately six times more juveniles than traditionally tagged with CWTs, and at an estimated cost of 23 % of that associated with tagging with CWTs GSI and PBT provide an alternate, cheaper, and more effective method in the assessment and management of Canadian-origin salmon relative to CWTs, and an opportunity for a genetic-based system to replace the current CWT system for salmon assessment The time has arrived for agencies managing Pacific salmon fisheries to prepare for a transition from CWTs to a genetics-based fisheries assessment program
### Instruction: Please summerize the given abstract to a title ### Response: Influence of environmental enrichment on circulating white blood cell counts and behavior of female turkeys ### Response:	Under commercial conditions turkeys are housed in large groups in poorly structured environments. This leads to stress and subsequently to pecking and cannibalism. Environmental enrichment is suggested to reduce stress and feather pecking, thus leading to an increase of the overall flock health. However, the effect of increasing age on the use of enrichment elements and on the behavior repertoire as well as its correlation with health parameters has scarcely been studied. Therefore, our objective was to investigate the influence of environmental enrichment on the behavioral repertoire and on health parameters of turkeys. In 3 consecutive trials, female turkeys were housed up to 12 wk either in an unstructured (control group) or enriched environment (EE group) featuring elevated plateaus at different levels (“turkey tree”). Behavior parameters, clinical health, and immune parameters were determined at selected time points. The percentage of birds using the turkey tree increased with age up to 55 to 77% at 22 to 30 d post hatch (dph). Thereafter, the number of birds located on the turkey tree decreased to 25 to 32% at 73 to 79 dph. Feather pecking and fighting was significantly lower in the EE group compared to the control group in 2 and 3 trials, respectively (P < 0.05). The integrity of feathers and integument, scored in the head/neck, wing, and tail regions was repeatedly better in the EE birds compared to control birds at most investigated time points (P < 0.05), suggesting a reduction in stress related aggression by the use of the turkey tree. Head pecking, running and flying activity, foraging, and preening were overall comparable between the EE and the control group (P > 0.05). Humoral immunity as determined by vaccination-induced anti-Newcastle disease virus antibody titers was not affected by the turkey tree use. The flow cytometric evaluation of blood monocyte and T-lymphocyte numbers showed no repeatable difference between control and EE groups. Interestingly, compared to the control groups, EE birds displayed significantly higher numbers of circulating MHC class II(+) lymphocytes and lower numbers of thrombocytes at various time points compared to controls (P < 0.05). This study provides clear evidence that environmental enrichment with plateaus not only leads to an altered behavioral repertoire but also modifies some of the investigated immune parameters, implying that EE may have a modulatory effect on turkeys’ immunity and overall fitness. Further studies are needed to understand the correlation between behavior and health parameters in birds more closely.
### Instruction: Please summerize the given abstract to a title ### Response: Genetic Specificity of the Siberian Forest Reindeer (Rangifer tarandus valentinae Flerov, 1932) of the Kuznetsk Alatau. ### Response:	This is the first study to show the genetic identity of the Altai-Sayan population of the forest reindeer of the Kuznetsk Alatau (Rangifer tarandus valentinae). The population is characterized by the existence of unique mitochondrial lines, the absence of signs of introgression of domestic rein deer mtDNA, as well as a low level of genetic diversity. In the sample studied, only two nucleotide substitutions (both of them transitions) were revealed, the nucleotide diversity (0.0015 ± 0.00136) was almost ten times lower than in most populations of wild reindeer in Russia and was comparable only with that of some wild reindeer populations of Norway and Svalbard. The haplotype diversity (h) was also relatively low (0.615 ± 0.102).
### Instruction: Please summerize the given abstract to a title ### Response: Review of the evidence on bee background mortality ### Response:	In March 2019, the European Commission mandated EFSA to revise itsguidance document on the risk assessment of plant protection products on bees (Apis mellifera, Bombus spp and solitary bees) One of the aspectsof this revision involvesareview of the evidence on bee background mortality, which is addressed in this report Eight different assessment questions were formulated in order to account for the variousbee groups, the difference between active and inactive periods, and to specifically consider the influence of beekeeping practices on honey bees A systematic literature review and a survey ofbeekeepers from several EU countries were used as the main sources of information The available dataset for honey bees is large enough to draw rather robust conclusions The results of the analysis highlight important differences in levels of background mortality between the castes and roles of the bees in the colony The impact of beekeeping practices on mortalityappears to be very limited, but not completely absent The dataset for bumble bees and solitary bees is smaller and too scattered to be able to draw robust conclusions Nevertheless,it issufficient to be able to define a plausible range of background daily mortality rates, and to provide some indications of differences among species
### Instruction: Please summerize the given abstract to a title ### Response: From Deer-to-Deer: SARS-CoV-2 is efficiently transmitted and presents broad tissue tropism and replication sites in white-tailed deer ### Response:	Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of coronavirus disease 2019 (COVID-19) in humans, has a broad host range, and is able to infect domestic and wild animal species. Notably, white-tailed deer (WTD, Odocoileus virginianus), the most widely distributed cervid species in the Americas, were shown to be highly susceptible to SARS-CoV-2 in challenge studies and reported natural infection rates approaching 40% in free-ranging WTD in the U.S. Thus, understanding the infection and transmission dynamics of SARS-CoV-2 in WTD is critical to prevent future zoonotic transmission to humans and for implementation of effective disease control measures. Here, we demonstrated that following intranasal inoculation with SARS-CoV-2, WTD fawns shed infectious virus up to day 5 post-inoculation (pi), with high viral loads shed in nasal and oral secretions. This resulted in efficient deer-to-deer transmission on day 3 pi. Consistent a with lack of infectious SARS-CoV-2 shedding after day 5 pi, no transmission was observed to contact animals added on days 6 and 9 pi. We have also investigated the tropism and sites of SARS-CoV-2 replication in adult WTD. Infectious virus was recovered from respiratory-, lymphoid-, and central nervous system tissues, indicating broad tissue tropism and multiple sites of virus replication. The study provides important insights on the infection and transmission dynamics of SARS-CoV-2 in WTD, a wild animal species that is highly susceptible to infection and with the potential to become a reservoir for the virus in the field. Author summaryThe high susceptibility of white-tailed deer (WTD) to SARS-CoV-2, their ability to transmit the virus to other deer, and the recent findings suggesting widespread SARS-CoV-2 infection in wild WTD populations in the U.S. underscore the need for a better understanding of the infection and transmission dynamics of SARS-CoV-2 in this potential reservoir species. Here we investigated the transmission dynamics of SARS-CoV-2 over time and defined the major sites of virus replication during the acute phase of infection. Additionally, we assessed the evolution of the virus as it replicated and transmitted between animals. The work provides important information on the infection dynamics of SARS-CoV-2 in WTD, an animal species that - if confirmed as a new reservoir of infection - may provide many opportunities for exposure and potential zoonotic transmission of the virus back to humans.
### Instruction: Please summerize the given abstract to a title ### Response: Fine-mapping and candidate gene analysis for the foxglove aphid resistance gene Raso2 from wild soybean PI 366121 ### Response:	KEY MESSAGE: The foxglove aphid resistance gene Raso2 from PI 366121 was fine-mapped to 77 Kb region, and one candidate gene was identified. The foxglove aphid (FA: Aulacorthum solani Kaltenbach) is an important insect pest that causes serious yield losses in soybean. The FA resistance gene Raso2 from wild soybean PI 366121 was previously mapped to a 13 cM interval on soybean chromosome 7. However, fine-mapping of Raso2 was needed to improve the effectiveness of marker-assisted selection (MAS) and to eventually clone it. The objectives of this study were to fine-map Raso2 from PI 366121 using Axiom® 180 K SoyaSNP array, to confirm the resistance and inheritance of Raso2 in a different background, and to identify candidate gene(s). The 105 F4:8 recombinant inbred lines were used to fine-map the gene and to test antibiosis and antixenosis of Raso2 to FA. These efforts resulted in the mapping of Raso2 on 1 cM interval which corresponds to 77 Kb containing eight annotated genes based on the Williams 82 reference genome assembly (Wm82.a2.v1). Interestingly, all nonsynonymous substitutions were in Glyma.07g077700 which encodes the disease resistance protein containing LRR domain and expression of the gene in PI 366121 was significantly higher than that in Williams 82. In addition, distinct SNPs within Glyma.07g077700 that can distinguish PI 366121 and diverse FA-susceptible soybeans were identified. We also confirmed that Raso2 presented the resistance to FA and the Mendelian inheritance for single dominant gene in a different background. The results of this study would provide fundamental information on MAS for development of FA-resistant cultivars as well as functional study and cloning of the candidate gene in soybean.
### Instruction: Please summerize the given abstract to a title ### Response: Primate selfies and anthropozoonotic diseases: lack of rule compliance and poor risk perception threatens orangutans. ### Response:	Our understanding of the transmission of anthropozoonotic diseases between humans and nonhuman primates, particularly great apes due to their close genetic relationship with humans, highlights a serious potential threat to the survival of these species. This is particularly the case at tourism sites where risk of disease transmission is increased. We focus on the interaction between tourists and the Critically Endangered Sumatran orangutan (Pongo abelii) at Bukit Lawang in the Gunung Leuser National Park, Indonesia, before and after the park was closed due to the threat of Covid-19 in April 2020. Through analysis of posts on Instagram we determine the extent of compliance by visitors with the rule to keep a minimum distance of 10 meters from orangutans and assess the positional behaviours of the orangutans. Of the 2,229 photographs we assessed between November 2019 and July 2020, 279 depicted one or more orangutans. Forty-two of these contained both a human and an orangutan, and of these all showed inappropriate behaviours (direct contact, feeding orangutans, close proximity <5m) providing direct evidence of noncompliance with the 10m distance rule. Most of these photographs additionally showed orangutans performing abnormal positional behaviours such as being low to or on the ground rather than their natural high position in the canopy; being near the ground and in close proximity to humans increases the risk of anthropozoonotic disease transmission. As expected, we found a significant decrease in number of photographs that were posted following the closure, and a decrease in the proportion of photographs that showed orangutans or tourists feeding orangutans. Tourists do not seem to perceive that they pose risks to the orangutans and therefore increased awareness, education and enforcement of rules by all stakeholders, tourism bodies and government officials need to be actioned in order to safeguard this important population, which is crucial to the future survival of the Sumatran orangutan.
### Instruction: Please summerize the given abstract to a title ### Response: Machine learning methods for imbalanced data set for prediction of faecal contamination in beach waters ### Response:	Predicting water contamination by statistical models is a useful tool to manage health risk in recreational beaches. Extreme contamination events, i.e. those exceeding normative are generally rare with respect to bathing conditions and thus the data is said to be imbalanced. Modeling and predicting those rare events present unique challenges. Here we introduce and evaluate several machine learning techniques and metrics to model imbalanced data and evaluate model performance. We do so by using a) simulated data-sets and b) a real data base with records of faecal coliform abundance monitored for 10 years in 21 recreational beaches in Uruguay (N ≈ 19000) using in situ and meteorological variables. We discuss advantages and disadvantages of the methods and provide a simple guide to perform models for a general audience. We also provide R codes to reproduce model fitting and testing. We found that most Machine Learning techniques are sensitive to imbalance and require specific data pre-treatment (e.g. upsampling) to improve performance. Accuracy (i.e. correctly classified cases over total cases) is not adequate to evaluate model performance on imbalanced data set. Instead, true positive rates (TPR) and false positive rates (FPR) are recommended. Among the 52 possible candidate algorithms tested, the stratified Random forest presented the better performance improving TPR in 50% with respect to baseline (0.4) and outperformed baseline in the evaluated metrics. Support vector machines combined with upsampling method or synthetic minority oversampling technique (SMOTE) performed well, similar to Adaboost with SMOTE. These results suggests that combining modeling strategies is necessary to improve our capacity to anticipate water contamination and avoid health risk.
### Instruction: Please summerize the given abstract to a title ### Response: Different sensitivity to heatwaves across the life cycle of fish reflects phenotypic adaptation to environmental niche ### Response:	Predicting responses of marine organisms to global change requires eco-physiological assessments across the complex life cycles of species. Here, we experimentally tested the vulnerability of a demersal temperate fish (Sparus aurata) to long-lasting heatwaves, on larval, juvenile and adult life-stages. Fish were exposed to simulated coastal (18 °C), estuarine (24 °C) summer temperatures, and heatwave conditions (30 °C) and their physiological responses were assessed based on cellular stress response biomarkers (heat shock protein 70 kDa, ubiquitin, antioxidant enzymes, lipid peroxidation) and phenotypic measures (histopathology, condition and mortality). Life-stage vulnerability can be ranked as larvae > adults > juveniles, based on mortality, tissue pathology and the capacity to employ cellular stress responses, reflecting the different environmental niches of each life stage. While larvae lacked acclimation capacity, which resulted in damage to tissues and elevated mortality, juveniles coped well with elevated temperature. The rapid induction of cytoprotective proteins maintained the integrity of vital organs in juveniles, suggesting adaptive phenotypic plasticity in coastal and estuarine waters. Adults displayed lower plasticity to heatwaves as they transition to deeper habitats for maturation, showing tissue damage in brain, liver and muscle. Life cycle closure of sea breams in coastal habitats will therefore be determined by larval and adult stages.
### Instruction: Please summerize the given abstract to a title ### Response: Avaliação de dois sistemas aquapônicos com a halófita Sarcocornia ambigua (Michx.) Alonso & Crespo para recirculação de água da piscicultura marinha intensiva ### Response:	O tratamento da água da aquicultura em ciclo fechado através da produção hidropônica de biomassa vegetal com interesse econômico é denominado de aquaponia. O cultivo aquapônico pode ser realizado em basicamente dois tipos de sistemas, o deep water system ou flutuante (DWS) e o nutrient film technique ou leito cultivado (NFT). A Sarcocornia ambigua (Michx.) Alonso & Crespo (Amaranthaceae) é um subarbusto perene, nativo das marismas temperadas e tropicais da costa atlântica da América do Sul e capaz de atingir alta produtividade quando irrigado com efluentes salinos da maricultura. Estas características sugerem um grande potencial desta planta para utilização em sistemas de recirculação de água (RAS; abreviatura inglesa de Recirculating Aquaculture Systems), indispensáveis aos modernos sistemas intensivos de ciclo fechado da maricultura intensiva. O presente estudo teve como objetivo avaliar a capacidade de remoção de compostos nitrogenados e fosfatos da água de recirculação de uma piscicultura marinha intensiva através de dois RAS aquapônicos, constituídos de plantas de S. ambigua crescendo em sistemas NFT e DWS, além de quantificar o crescimento e a produção de biomassa dessa planta. O NFT foi montado em uma bancada hidropônica comercial, com 8 tubos de PVC com 6 m de comprimento acomodando um total de 120 plantas, recebendo água de uma caixa dágua contendo 450 L, com um fluxo de 385,2 L/hora e uma taxa de renovação diária da água de 20,5 vezes. O DWS era composto por um tanque plástico de cultivo (1,89m x 1,26m x 0,42m) de 1000 L com 6 balsas flutuantes contendo um total de 120 plantas, que recirculava água com uma caixa plástica coletora de 60 L, com um fluxo de 61,2 L/hora e uma taxa de renovação diária de 1,5 vezes. O delineamento experimental do trabalho foi composto dos dois RAS aquapônicos citados acima, que receberam água salgada de recirculação de tanques de engorda do cultivo intensivo em ciclo fechado do peixe marinho bijupirá (Rachycentron canadum Linnaeus, 1766). A eficiência na remoção dos nutrientes nos dois RAS aquapônicos foi avaliada em três ciclos de recirculação (C1, C2 e C3) com duração de 72 horas, sendo coletadas amostras de água a cada 24 horas para análises dos compostos nitrogenados, fosfatos e parâmetros da qualidade de água, assim como clorofila a. O desenvolvimento das plantas foi avaliado através de biometria periódica e coleta final da biomassa de caules e raízes. As concentrações de N-NO3, N-NO2, N-NAT (nitrogênio amoniacal total) e P-PO4, bem como salinidade, temperatura e pH durante o experimento se mantiveram dentro dos limites recomendados para o bijupirá. Os cultivos aquapônicos demonstraram um bom potencial de uso para remoção de composto nitrogenados do cultivo intensivo do bijupirá, mas particularmente para o NAT (até 93,3% em 72 horas) e com menor eficiência para o nitrato (até 67,4% em 72 horas). Nos dois RAS, houve grandes X variações nas taxas de remoção entre ciclos e entre os tempos de retenção nos ciclos, bem como incorporações de nitrito (até 0,15 mg N-NO2/L) e nitrato (até 55,8 mg N-NO3/L) na água de recirculação. Condições significativamente mais acidificadas, associadas aos eventos de incorporações de nitrito e nitrato (marcadamente em DWS durante C2 e C3), sugerem o estabelecimento de uma comunidade de microrganismos caracteristicamente mais nitrificante. Os teores médios de fosfato na água dos tanques de bijupirá aumentaram ao longo das três semanas de experimentação (de 0,56 para 7,60 mg P-PO4/L). Em ambos RAS aquapônicos e em todos os ciclos, o fosfato apresentou altas taxas de incorporação (até 257,1% após 72 horas) na água em recirculação, provavelmente resultante da mineralização do fósforo orgânico dissolvido, originado tanto da comida ofertada como de células fitoplanctônicas mortas. Concentrações médias globais significativamente menores de todos nutrientes ocorreram NFT. As plantas de S. ambigua mostraram um bom desenvolvimento em aquaponia. Um maior crescimento individual foi observado no NFT, onde 88 dias após poda dos caules, as plantas apresentaram médias de altura do caule de 26,4 cm, 5,4 ramificações por caule com comprimento máximo médio de 16,5 cm e uma massa fresca de caule de 36,2 g. O menor crescimento das plantas no DWS pode ter sido ocasionado por baixa oxigenação das raízes, devido ao menor fluxo de água e a ausência de aeração no tanque de cultivo. A produção potencial de biomassa fresca de caules de S. ambigua variou entre 0,62 (NFT) e 1,10 kg/m²/88dias (DWS). Apesar no menor crescimento das plantas, a maior produção de biomassa em DWS ocorreu devido ao maior número de indivíduos por área de cultivo (50,4 plantas/m²) do que no NFT (11,1 plantas/m²). Ambos os sistemas apresentaram um bom potencial de remoção de nutrientes da piscicultura marinha intensiva do bijupirá. Um mais rápido desenvolvimento de plantas de S. ambigua pode ser obtido no NFT, mas um menor uso de espaços e maiores produtividades primárias por área de plantio podem ser obtidas no DWS.
### Instruction: Please summerize the given abstract to a title ### Response: SEASONAL VARIATION OF SERUM 25-HYDROXY-VITAMIN D IN TWO CAPTIVE EASTERN BLACK RHINOCEROS ( DICEROS BICORNIS MICHAELI) HOUSED IN A NORTH AMERICAN ZOO. ### Response:	Black rhinoceros ( Diceros bicornis spp.) are critically endangered species, with less than 65 individual animals housed in captivity within Association of Zoos and Aquariums-accredited zoos within the United States, and an estimated 5,500 individual animals of all subspecies surviving in the wild. Previously published reference values for circulating vitamin D3 (25OHD3; 55.7 ± 34.2 ng/ml) were based upon samples from free-ranging black rhinoceros in Africa. Recent research in human medicine has highlighted the importance of subclinical vitamin D deficiency, with links to increased risks for developing various health conditions. Serum samples collected opportunistically from two captive Eastern black rhinoceros ( Diceros bicornis michaeli) housed with seasonal access outdoors in a North American zoo were tested for 25-hydroxy-vitamin D (25OHD) levels over a 3-yr period. A commercially prepared pelleted diet containing vitamin D3 was fed to both rhinos. This study correlates environmental ultraviolet (UV) index, dietary supplementation, and seasonal serum 25OHD levels to compare with known 25OHD3 levels in free-ranging African black rhinoceros. Results in these two individuals suggest that D. bicornis spp. are dependent upon sunlight or UVB for measurable circulating 25OHD, and that current vitamin D3 supplementation levels may have little effect for Diceros spp. in human care housed in northern latitudes.
### Instruction: Please summerize the given abstract to a title ### Response: Environmental filtering and limiting similarity as main forces driving diatom community structure in Mediterranean and continental temporary and perennial streams ### Response:	Climatic extreme events such as droughts (unpredictable), dry periods (predictable) or even flush floods, threaten freshwater ecosystems worldwide. The filtering mechanisms of these events and their strength on communities, however, can be different among regions. While time-for-adaptation theory defines whether or not water scarcity can be considered as disturbance, the stress-dominance theory predicts an increase in importance of environmental filtering and a decrease in the role of biotic interactions in communities with increasing environmental stress. Here, we tested whether environmental filtering (leading to trait convergence) or limiting similarity (leading to trait divergence) is the main assembly rule shaping the structure and trait composition of benthic diatom assemblages in Mediterranean (Portuguese) and continental (Hungarian) temporary and perennial streams. We assumed that the trait composition of diatom assemblages in the two stream types would be less different in the Mediterranean than in the continental region (addressed to time-for-adaptation theory). We also hypothesized that trait composition would be shaped by environmental filtering in the Hungarian streams while by biotic interactions in Portuguese streams (addressed to stress-dominance theory). Our results supported our first hypothesis since traits, which associated primarily to temporary streams were found only in the continental region. Our findings, however, only partially proved the stress-dominance hypothesis. In the continental region, where drying up of streams were induced by unpredictable droughts, biotic interactions were the main assembly rules shaping community structure. In contrast, environmental filtering was nearly as important as limiting similarity in structuring trait composition in the Mediterranean region during the predictable dry phase with no superficial flow. These analyses also highlighted that drought events (both predictable and unpredictable ones) have a complex and strong influence on benthic diatom assemblages resulting even in irreversible changes in trait composition and thereby in ecosystem functioning.
### Instruction: Please summerize the given abstract to a title ### Response: Otolith morphometry provides length and weight predictions and insights about capture sites of Prochilodus lineatus (Characiformes: Prochilodontidae) ### Response:	Here we choose the sábalo Prochilodus lineatus, to answer the following questions: How the otolith length and weight are correlated to fish measurements (length and weight)? How reliable are the otoliths measurements to predict the length and age of P. lineatus? Finally, we propose predictive equations of the length and weight of the fish using length and weight of the otolith. The otoliths were sampled from individuals collected in the Upper Paraná River floodplain during 2012 and 2013 years. The relationships among the otolith measurements and both length and weight of the fish were performed using linear regressions. To test whether the length and weight of the otolith differ between the sampled sites, Variance Analysis was performed. Finally, we made analysis of Kruskal-Wallis to verify if the measurements obtained through the otoliths could be used to distinguish the age of the fish. We demonstrate that the length and weight of the otolith are good proxies to predict the length and weight of the fish. Although some ages were statistically different, this result does not support the idea that the age of the fish can be accurately inferred only using otolith measures.(AU)
### Instruction: Please summerize the given abstract to a title ### Response: The lesser Pacific striped octopus, Octopus chierchiae: an emerging laboratory model for the study of octopuses ### Response:	Cephalopods have the potential to become useful experimental models in various fields of science, particularly in neuroscience, physiology, and behavior. Their complex nervous systems, intricate color- and texture-changing body patterns, and problem-solving abilities have attracted the attention of the biological research community, while the high growth rates and short life cycles of some species render them suitable for laboratory culture. Octopus chierchiae is a small octopus native to the central Pacific coast of North America whose predictable reproduction, short time to maturity, small adult size, and ability to lay multiple egg clutches (iteroparity) make this species ideally suited to laboratory culture. Here we describe novel methods for culture of O. chierchiae, with emphasis on enclosure designs, feeding regimes, and breeding management. Our results demonstrate the feasibility of multigenerational culture of O. chierchiae. Specifically, O. chierchiae bred in the laboratory grows from a 3.5-millimeter mantle length at hatching to an adult mantle length of approximately 20-30 millimeters in 250-300 days, with 14-15% survivorship to over 400 days of age in first and second generations. O. chierchiae sexually matures at around an estimated six months of age and, unlike most octopus species, can lay multiple clutches of eggs, approximately every 30-90 days. Eggs are large and hatchlings emerge as direct developing octopuses. Based on these results, we propose that O. chierchiae possesses both the practical and biological features needed for a model octopus that can be cultured repeatedly to address a wide range of fundamental biological questions.
### Instruction: Please summerize the given abstract to a title ### Response: Seasonal geochemical trends and pollution assessment of bottom sediments in the São Francisco hydrographic basin, Brazil: the Três Marias Reservoir ### Response:	The Três Marias Reservoir is the ninth largest reservoir in Brazil, becoming crucial for national strategic development. However, many anthropic activities may affect the sediment quality, promoting the need for a proper environmental assessment. This research appraised the seasonal influences on the Três Marias Reservoir's sediment geochemistry, elucidating possible anthropogenic impacts. The concentrations of Mg, Al, Ca, Cr, Fe, Co, Cu, Cd, Ti, Mn, Ni, Zn, Ba, and Pb were measured in 78 samples of bottom sediments regarding the two seasons of the area, a dry winter and rainy summer. The median ± 2 median absolute deviation (MAD) settled the geochemical background and environmental thresholds for the two seasons. The sediment quality guidelines CONAMA 344/12 highlight the possible adverse ecological effects of pollutants. The hierarchical clustering analysis, the geoaccumulation index, and the pollution load index delineated the polluted zones. The pollution load index ranges from 0.25 to 2.28 in the dry season and 0.56 to 2.11 in the rainy season, defining three affected zones in the reservoir. Forestry and agriculture are the probable pollution sources, reaching warning levels that should be considered in further environmental strategies.
### Instruction: Please summerize the given abstract to a title ### Response: Genetic Diversity of Armenian Grapevine (Vitis vinifera L.) Germplasm: Molecular Characterization and Parentage Analysis. ### Response:	Armenia is an important country of origin of cultivated Vitis vinifera subsp. vinifera and wild Vitis vinifera subsp. sylvestris and has played a key role in the long history of grape cultivation in the Southern Caucasus. The existence of immense grapevine biodiversity in a small territory is strongly linked with unique relief and diverse climate conditions assembled with millennium-lasting cultural and historical context. In the present in-depth study using 25 nSSR markers, 492 samples collected in old vineyards, home gardens, and private collections were genotyped. For verification of cultivar identity, the symbiotic approach combining genotypic and phenotypic characterization for each genotype was carried out. The study provided 221 unique varieties, including 5 mutants, from which 66 were widely grown, neglected or minor autochthonous grapevine varieties, 49 turned out to be new bred cultivars created within the national breeding programs mainly during Soviet Era and 34 were non-Armenian varieties with different countries of origin. No references and corresponding genetic profiles existed for 67 genotypes. Parentage analysis was performed inferring 62 trios with 53 out of them having not been previously reported and 185 half-kinships. Instability of grapevine cultivars was detected, showing allelic variants, with three and in rare cases four alleles at one loci. Obtained results have great importance and revealed that Armenia conserved an extensive grape genetic diversity despite geographical isolation and low material exchange. This gene pool richness represents a huge reservoir of under-explored genetic diversity.
### Instruction: Please summerize the given abstract to a title ### Response: The relative influence of cross-seasonal and local weather effects on the breeding success of a migratory songbird ### Response:	1) In seasonal environments, fluctuating early-season weather conditions and short breeding windows limit reproductive opportunities, such that breeding earlier or later than the optimum may be particularly costly. Given the risk of early-season energy limitations, time- and energy-based carry-over effects stemming from environmental conditions across the annual cycle may have pronounced consequences for breeding phenology and fitness. Generally, when and where environmental conditions are most influential are poorly understood, limiting our ability to predict the future of climate sensitive populations. 2) For an alpine-breeding, migratory population of horned lark (Eremophila alpestris) in northern British Columbia, Canada (54.8°N), we assessed how weather conditions across the annual cycle influenced clutch initiation date and offspring development. We also addressed how cross-seasonal effects on breeding parameters combine to influence reproductive fitness. 3) With 12 years of breeding data and 3 years of migration data, we used a sliding window approach to identify points during the annual cycle when weather events most influenced breeding phenology and offspring development. Consequences for breeding success were assessed using nest survival simulations. 4) Average clutch initiation date varied up to 11 days among years but did not advance from 2003 to 2019. Warmer temperatures at stopover and breeding sites advanced clutch initiation, but winter conditions had no effect. Sub-zero stopover temperatures carried over to prolong offspring development independent of clutch initiation date, potentially indicating energy-based carry-over effects acting on parental investment. Nest survival decreased with both later clutch initiation and prolonged offspring development, such that females nesting earlier and fledging offspring at a younger age were up to 45% more likely to reproduce successfully. 5) We demonstrate that stronger carry-over effects originated from environmental conditions closer to the breeding site in time and space, as well as the potential for energy-based mechanisms to link pre-breeding conditions to reproductive fitness. We also highlight the importance of extended stopovers for songbirds breeding in seasonal environments, particularly given that climatic conditions are becoming increasingly decoupled across stages of the annual cycle. Understanding the cross-seasonal mechanisms shaping breeding decisions in stochastic environments allows for more accurate predictions of population-level responses to climate change.
### Instruction: Please summerize the given abstract to a title ### Response: Fast estimation of plant growth dynamics using deep neural networks. ### Response:	BACKGROUND In recent years, there has been an increase of interest in plant behaviour as represented by growth-driven responses. These are generally classified into nastic (internally driven) and tropic (environmentally driven) movements. Nastic movements include circumnutations, a circular movement of plant organs commonly associated with search and exploration, while tropisms refer to the directed growth of plant organs toward or away from environmental stimuli, such as light and gravity. Tracking these movements is therefore fundamental for the study of plant behaviour. Convolutional neural networks, as used for human and animal pose estimation, offer an interesting avenue for plant tracking. Here we adopted the Social LEAP Estimates Animal Poses (SLEAP) framework for plant tracking. We evaluated it on time-lapse videos of cases spanning a variety of parameters, such as: (i) organ types and imaging angles (e.g., top-view crown leaves vs. side-view shoots and roots), (ii) lighting conditions (full spectrum vs. IR), (iii) plant morphologies and scales (100 μm-scale Arabidopsis seedlings vs. cm-scale sunflowers and beans), and (iv) movement types (circumnutations, tropisms and twining). RESULTS Overall, we found SLEAP to be accurate in tracking side views of shoots and roots, requiring only a low number of user-labelled frames for training. Top views of plant crowns made up of multiple leaves were found to be more challenging, due to the changing 2D morphology of leaves, and the occlusions of overlapping leaves. This required a larger number of labelled frames, and the choice of labelling "skeleton" had great impact on prediction accuracy, i.e., a more complex skeleton with fewer individuals (tracking individual plants) provided better results than a simpler skeleton with more individuals (tracking individual leaves). CONCLUSIONS In all, these results suggest SLEAP is a robust and versatile tool for high-throughput automated tracking of plants, presenting a new avenue for research focusing on plant dynamics.
### Instruction: Please summerize the given abstract to a title ### Response: Organic Farming as an Alternative Maintenance Strategy in the Opinion of Farmers from Natura 2000 Areas ### Response:	Agricultural land accounts for approximately 40% of the total Natura 2000 (N2K) network area. Therefore, many habitats and species protected under the Habitats and Birds Directives are dependent on or linked to agricultural practices. This implies that sustaining agriculture of a high natural value is a priority in achieving the aim of halting the loss of biodiversity in the European Union (EU). However, extensive agriculture is unprofitable in many regions of the EU, which results in it being either abandoned or intensified in the absence of financial support. Hence, organic farming (OF), which is most often supported with public funds, can be an alternative to conventional agriculture in N2K areas. This article is an empirical study of the differences in perceiving the possibilities of farm functioning in a protected area (PA) by organic and conventional farm owners. It was examined whether this could be the actual path to improving farmers’ living conditions in the context of legal protection of naturally valuable areas. The study material comprises the results of a survey conducted at the turn of 2016 and 2017, which addressed a total of 292 farmers, including 152 organic farm operators and 140 conventional farm operators, whose areas under cultivation were located within the N2K “Dolina Biebrzy” (“Biebrza Valley”) PLH200008 area in Poland. For the analysis of the data collected using structured questionnaires, a variety of statistical methods and techniques were applied. The study results indicated that in terms of satisfaction with the economic performance of their farms, there is no major difference between the opinions expressed by organic and conventional farm owners. However, organic farming could be an alternative livelihood strategy from the environmental policy perspective.
### Instruction: Please summerize the given abstract to a title ### Response: Collection calendar: the diversity and local knowledge of wild edible plants used by Chenthang Sherpa people to treat seasonal food shortages in Tibet, China ### Response:	BACKGROUND: Wild edible plants (WEPs) are non-cultivated and non-domesticated plants used for food. WEPs provided food, nutrition, herbs and other plant products for people in underdeveloped areas, such as the Everest region, to maintain their daily lives. Chenthang Town is the only Sherpa ethnic township in Tibet, China. The core purpose of this research is to investigate, collect and record the WEPs and related local knowledge and functions within the Sherpa community. The ultimate goal is to answer the question of why Sherpa people choose these particular plants. MATERIALS AND METHODS: The field study was carried out in the six Sherpa communities of Chenthang Township from September 2019 to August 2020. The WEPs and related local knowledge were collected through semistructured interviews and direct observations. The field work was performed with the assistance of local guides. During the field survey, we collected plant specimens based on the principle of one plant with one vernacular name. In this study, we utilised a use report (UR) and cultural importance index (CI) to evaluate the comprehensive utilization value of WEPs in the daily diet of Sherpa people. RESULTS: We interviewed 78 people individually who provided us with 1199 use reports. In total, we collected 84 WEPs belonging to 65 genera in 41 families. These species were identified as 78 distinct ethno-species by local people, and the vernacular name of each ethno-species was recorded. Then, these use reports were classified into six use categories. All these plants were native wild plants. In these plants, Arisaema utile, Sorbus cuspidata and Elaeagnus umbellata have been introduced into home gardens by local people. Following the description of the Sherpa people, we articulated a collection calendar for WEPs. The Sherpa collect WEPs throughout nearly the entire year, January and February being the exceptions. CONCLUSION: The collection calendar of wild edible plants reflects the wisdom of the Sherpa in terms of survival. The Sherpa cleverly survive the food shortage periods by harnessing the phenology of different species. In general, WEPs can provide the Sherpa with seasonal carbohydrates, nutrition, healthcare supplements and other products and services necessary for survival, which is likely why the Sherpa choose these plants. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13002-021-00464-x.
### Instruction: Please summerize the given abstract to a title ### Response: Short term fluctuating temperature alleviates Daphnia stoichiometric constraints. ### Response:	In this study, we analysed how short term temperature fluctuation interacts with nutrient limitation in the vertical migrating Daphnia commutata. We hypothesize that short term (daily) temperature fluctuation will alleviate nutrient limitation. We carried out experiments analysing growth rates, phosphorus and RNA content of D. commutate grown under four different temperature regimes and two P-limited conditions. Our experiments showed that individuals grown under fluctuating temperature grew more than at the mean temperature. We estimated the expected sizes for the 15 °C treatment based on the Q10 and for the fluctuating temperature treatment. These expected sizes for both treatments resulted well below the observed ones. The P and RNA content of individuals grown at 10 °C were significantly higher than those at 20 °C, and when individuals grown at 10 °C were translocated to 20 °C they exerted an increased growth rate. Our results suggest that, under a regime of diel vertical migration, the temperature alternation would allow migrating organisms to alleviate the effect of severe nutrient limitation maintaining population growth. Under a scenario of global warming, where epilimnetic temperatures will increase, lake temperature will interact with nutrient limitation for consumers, but, organisms may be able to face these changes if they can still regularly move from a cold hypolimnion to a warmer epilimnion.
### Instruction: Please summerize the given abstract to a title ### Response: Evaluation of the complete nuclear rDNA unit sequence of the jellyfish Cyanea nozakii Kishinouye (Scyphozoa: Semaeostomeae) for molecular discrimination. ### Response:	The harmful jellyfish Cyanea nozakii Kishinouye has frequently occurred on Korean coasts, and its blooms have caused serious ecological and economic damages. DNA sequences of the C. nozakii for molecular detection and discrimination are relatively scarce. In this study, we determined the complete sequence of a single unit of tandemly repeated ribosomal DNA (rDNA) of the Korean C. nozakii and characterized the molecular features of the rDNA. The complete rDNA contained 8,003 bp (48.4% GC) with the same gene arrangement (18S, ITS1, 5.8S, ITS2, 28S, and IGS) to the typical eukaryotes. Dot plot analysis showed that the coding regions (18S, 5.8S, and 28S) were highly conserved, while the non-coding regions (ITS1, ITS2, and IGS) were more variable and parsimony-informative. The IGS contained a putative transcription termination signal (poly(T) tract) and four repeats of block minisatellites. Phylogenetic analyses using 18S and 28S rDNA revealed well-resolved relationships of C. nozakii within the order Semaeostomeae, separating it from other Cyanea species. The complete rDNA sequence provides various options for the selection of jellyfish taxonomic markers and may be useful for discriminating between species of C. nozakii and phylogeny reconstruction with close relatives.
### Instruction: Please summerize the given abstract to a title ### Response: Distribution of Trichoptera communities in the Hozgargantacatchment (Los Alcornocales Natural Park, SW Spain) ### Response:	The distribution of Trichoptera of the Hozgarganta River (Los Alcornocales Natural Park, SW Spain) in relation with environmental factors was examined. Three groups of species were recognised according to the altitudinal gradient. In the headwaters the caddisflies Rhyacophila fonticola, Lepidostoma hirtum, Silonella aurata, Allogamus gibraltaricus, Hydropsyche infernalis and Diplectrona felix predominated; in the constrained section of the tributaries Polycentropus kingi, Chimarra marginata, Hydropsyche iberomaroccana, R. fonticola and Tinodes sp. prevailed; finally, in the main channel H. iberomaroccana, C. marginata, Hydropsyche lobata, Leptocerus lusitanicus and Rhyacophila munda were the most important species. A direct ordination analysis (CCA) was used to describe assemblage changes among sites and corroborated that conductivity and temperature were the variables that best explained Trichoptera distribution. The temporal analysis showed changes in the Trichoptera diversity and richness in permanent stretches, as well as variations in the structure of the communities according to the season. We identified autumn‐winter species (H. infernalis, H. siltalai, H. lobata, R. fonticola and R. munda ) and summer ones (Ithytrichia sp, Oxyethira unidentata, Mystacides azurea and Setodes argentipunctellus ). In the basin we distinguished permanent, intermittent and ephemeral reaches with similar caddisfly richness and diversity, however the species composition associated with each one was different. (© 2006 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)
### Instruction: Please summerize the given abstract to a title ### Response: Genetic structure of Metarhizium species in western USA: finite populations composed of divergent clonal lineages with limited evidence for recent recombination. ### Response:	Globally distributed, soil associated Metarhizium species used in insect biological control are evidently facultatively sexual and obligately outcrossing, yet sexual morphs have not been observed for most species and corroboration they recombine in nature remains limited. Community-wide genetic diversity of Metarhizium species among 480 soil isolates from 14 states of western USA was investigated to assess the contributions of clonality and recombination in determining each species' population structure. Seven species, varying >100-fold in relative abundance, were identified by phylogenetic analysis of 5' EF1-α (5TEF), including M. robertsii (n=372), M. guizhouense (n=37), M. brunneum (n=37), M. lepidiotae (n=14), M. pemphigi (n=11), M. anisopliae (n=7) and M. pingshaense (n=2). Analyses of composite multilocus genotypes integrating 5TEF sequences, multilocus microsatellites and mating type idiomorphs conducted on a subset of 239 isolates revealed that all species populations display pronounced clonal structure. Following clone-correction procedures to remove redundant clonal genotypes and collapse clonal lineages, each species' population sample was determined to be composed of a dozen or fewer genetically unique individuals. Thus, the Metarhizium community inhabiting western USA is conservatively estimated to comprise as few as 34 distinct genetic individuals, with a single, geographically ubiquitous clonal lineage of M. robertsii constituting 45% of total isolates. M. robertsii was the only population determined to be in linkage equilibrium. However, the high proportion of private alleles differentiating most M. robertsii clonal lineages argues against contemporary panmixia, thus the recombination signal detected may be historical. Nevertheless, within M. robertsii, M. brunneum and M. guizhouense there are closely related genotypes of opposite mating type, which suggests that if recombination is contemporary, it likely occurs between closely related individuals. The restricted number of genetic individuals observed throughout western North American Metarhizium species may signify these represent peripheral populations descended from limited numbers of founders among whom there has been little recombination relative to the extent of clone expansion and within-clone genetic divergence.
### Instruction: Please summerize the given abstract to a title ### Response: Plasticity for colour adaptation in vertebrates explained by the evolution of the genes pomc, pmch and pmchl ### Response:	Different camouflages work best with some background matching colour. Our understanding of the evolution of skin colour is based mainly on the genetics of pigmentation (“background matching”), with little known about the evolution of the neuroendocrine systems that facilitate “background adaptation” through colour phenotypic plasticity. To address the latter, we studied the evolution in vertebrates of three genes, pomc, pmch and pmchl, that code for α‐MSH and two melanin‐concentrating hormones (MCH and MCHL). These hormones induce either dispersion/aggregation or the synthesis of pigments. We find that α‐MSH is highly conserved during evolution, as is its role in dispersing/synthesizing pigments. Also conserved is the three‐exon pmch gene that encodes MCH, which participates in feeding behaviours. In contrast, pmchl (known previously as pmch), is a teleost‐specific intron‐less gene. Our data indicate that in zebrafish, pmchl‐expressing neurons extend axons to the pituitary, supportive of an MCHL hormonal role, whereas zebrafish and Xenopus pmch+ neurons send axons dorsally in the brain. The evolution of these genes and acquisition of hormonal status for MCHL explain different mechanisms used by vertebrates to background‐adapt.
### Instruction: Please summerize the given abstract to a title ### Response: UDP-glycosyltransferases contribute to the tolerance of parasitoid wasps towards insecticides ### Response:	Meteorus pulchricornis (Wesmael) (Hymenoptera: Braconidae) is a predominant endoparasitoid of lepidopteran pests in mulberry fields. Extensive application of insecticides puts natural enemies under threat. UDP-glycosyltransferases (UGTs), as important detoxification enzymes, potentially contribute to the detoxification of pesticides in insects. To investigate the roles of UGTs in the process of tolerance towards commonly used insecticides in M. pulchricornis, ten UGT genes were identified from the transcriptome database of M. pulchricornis. Seven UGT genes contained full-length ORFs and shared 47.12-78.28% identity with other homologous hymenopteran insects. qRT-PCR validation revealed that UGT genes can be induced by treatment of sublethal doses of phoxim, cypermethrin and chlorfenapyr, respectively, and these upregulations were depending on the time post insecticide treatments. To further explore the functions of UGT genes, three MpulUGT genes were singly knocked down, which resulted in the decline of UGT expression and significantly increased mortality of parasitoids under sublethal doses of insecticides exposure. This study revealed that UGTs in M. pulchricornis contributed to the tolerance towards insecticides and provided basic insight into the insecticide detoxification mechanism in parasitoid wasps.
### Instruction: Please summerize the given abstract to a title ### Response: Modular E-Collar for Animal Telemetry: An Animal-Centered Design Proposal ### Response:	Animal telemetry is a subject of great potential and scientific interest, but it shows design-dependent problems related to price, flexibility and customization, autonomy, integration of elements, and structural design. The objective of this paper is to provide solutions, from the application of design, to cover the niches that we discovered by reviewing the scientific literature and studying the market. The design process followed to achieve the objective involved a development based on methodologies and basic design approaches focused on the human experience and also that of the animal. We present a modular collar that distributes electronic components in several compartments, connected, and powered by batteries that are wirelessly recharged. Its manufacture is based on 3D printing, something that facilitates immediacy in adaptation and economic affordability. The modularity presented by the proposal allows for adapting the size of the modules to the components they house as well as selecting which specific modules are needed in a project. The homogeneous weight distribution is transferred to the comfort of the animal and allows for a better integration of the elements of the collar. This device substantially improves the current offer of telemetry devices for farming animals, thanks to an animal-centered design process.
### Instruction: Please summerize the given abstract to a title ### Response: Organic contamination in online laser-based plant stem and leaf water isotope measurements for pre-extracted samples. ### Response:	Water stable isotopes have been widely used as natural tracers to investigate soil-plant-atmosphere interactions. Recent developments in induction module cavity ring-down spectroscopy (IM-CRDS) have made it possible to rapidly complete isotope analyses, and to combust co-extracted organic compounds at the same time. However, the agreement between IM-CRDS and isotope ratio mass spectrometry (IRMS) analyses has generally been poor and was primarily attributable to spectral interference of IM-CRDS. Here we evaluated the impacts of organic contamination on the isotope ratios using IM-CRDS with two different methods. No spectral interference was observed for solid samples measured directly by IM-CRDS, whereas clear organic contamination occurred in isotope analyses for pre-extracted plant stem and leaf samples. Our results demonstrate that IM-CRDS can fully combust co-extracted organic compounds by in-line oxidation in the direct measurement of solid samples, although this may not guarantee that the IM-CRDS can obtain better isotopic data than IRMS. It may be risky to evaluate the performance of IM-CRDS by measuring pre-extracted water samples because cryogenic vacuum distillation is likely to introduce extra organic compounds, which may not be fully removed during subsequent IM-CRDS measurement. In addition, spectral variables are useful for post-processing corrections.

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