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def twofilter_smoothing(self, t, info, phi, loggamma, linear_cost=False,
def _twofilter_smoothing_ON2(self, t, ti, info, phi, lwinfo):
def _twofilter_smoothing_ON(self, t, ti, info, phi, lwinfo, return_ess,
def multiSMC(nruns=10, nprocs=0, out_func=None, **args):
def logpt(self, t, xp, x):
def reset_weights(self):
def setup_auxiliary_weights(self):
def exp_and_normalise(lw):
def essl(lw):
def log_sum_exp(v):
def log_sum_exp_ab(a, b):
def log_mean_exp(v, W=None):
def wmean_and_var(W, x):
def wmean_and_var_str_array(W, x):
def wquantiles(W, x, alphas=(0.25, 0.50, 0.75)):
def wquantiles_str_array(W, x, alphas=(0.25, 0.50, 0,75)):
def resampling_scheme(func):
def inverse_cdf(su, W):
def uniform_spacings(N):
def add(self, delta):
def dequeue(self, k):
def hilbert_array(xint):
def hilbert_sort(x):
def mean_sq_jump_dist(self, discard_frac=0.1):
def update(self, v):
def cartesian_lists(d):
def cartesian_args(args, listargs, dictargs):
def worker(qin, qout, f):
def distribute_work(f, inputs, outputs=None, nprocs=1, out_key='output'):
def distinct_seeds(k):
def multiplexer(f=None, nruns=1, nprocs=1, seeding=None, **args):
def reject_sv(m, s, y):
def predmean(self, xp):
def diff_ft(self, xt, yt):
def approx_likelihood(self, yt):
def approx_post(self, xp, yt):
def simulate(self, T):
def logpt(self, t, xp, x):
def EXt(self, xp):
def posterior(self, x, sigma=1.):
def posterior(self, x):
def posterior(self, x, s=1.):
def ppf(self, u):
def posterior(self, x, Sigma=None):
def psit(t, xp, x):
def avg_n_nplusone(x):
def interpoled_resampling(W, x):
def line_to_variables(source, line, inherit_permission, parent):
def parse_type(string,capture_strings,settings):
def sort_items(self,items,args=False):
def contents_size(self):
def markdown(self,md,project):
def sort(self):
def make_links(self, project):
def iterator(self, *argv):
def prune(self):
def get_used_entities(self,use_specs):
def prune(self):
def get_name(self,item):
def initialize():
def main(proj_data,proj_docs,md):
def convertToFree(stream, length_limit=True):
def continueLine(self):
def id_mods(obj,modlist,intrinsic_mods={},submodlist=[]):
def allfiles(self):
def correlate(self):
def markdown(self,md,base_url='..'):
def make_links(self,base_url='..'):
def make_srcdir_list(self,exclude_dirs):
def sub_notes(docs):
def get_parens(line,retlevel=0,retblevel=0):
def paren_split(sep,string):
def quote_split(sep,string):
def split_path(path):
def sub_links(string,project):
def sub_macros(string,base_url):
def copytree(src, dst):
def truncate(string, width):