Datasets:

thepurpleowl

/

codequeries

like 7

[ { "content": "\tdef testAcquire( self ) :\n\n\t\tc1 = Gaffer.Context()\n\t\tc2 = Gaffer.Context()\n\n\t\tp1a = GafferUI.Playback.acquire( c1 )\n\t\tp1b = GafferUI.Playback.acquire( c1 )\n\n\t\tself.assertTrue( p1a is p1b )\n\n\t\tp2a = GafferUI.Playback.acquire( c2 )\n\t\tp2b = GafferUI.Playback.acquire( c2 )\n\n\t\tself.assertTrue( p2a is p2b )\n\t\tself.assertTrue( p2a is not p1a )\n\n\t\ts = Gaffer.ScriptNode()\n\t\tp3a = GafferUI.Playback.acquire( s.context() )\n\t\tp3b = GafferUI.Playback.acquire( s.context() )\n\n\t\tself.assertTrue( p3a is p3b )", "metadata": "root.PlaybackTest.testAcquire", "header": "['class', 'PlaybackTest', '(', 'GafferUITest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 42 } ]

[ { "span": "self.assertTrue( p1a is p1b )", "start_line": 50, "start_column": 2, "end_line": 50, "end_column": 31 }, { "span": "self.assertTrue( p2a is p2b )", "start_line": 55, "start_column": 2, "end_line": 55, "end_column": 31 }, { "span": "self.assertTrue( p2a is not p1a )", "start_line": 56, "start_column": 2, "end_line": 56, "end_column": 35 }, { "span": "self.assertTrue( p3a is p3b )", "start_line": 62, "start_column": 2, "end_line": 62, "end_column": 31 } ]

[]

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[ { "content": " def __init__(self, test):\n self.test = test\n pass", "metadata": "root.TestStartedMessage.__init__", "header": "['class', 'TestStartedMessage', '(', ')', ':', '___EOS___']", "index": 137 }, { "content": " def __call__(self, receiver):\n receiver.executeTestStarted(self.test)\n pass", "metadata": "root.TestStartedMessage.__call__", "header": "['class', 'TestStartedMessage', '(', ')', ':', '___EOS___']", "index": 141 }, { "content": " def __init__(self, test, err):\n self.test = test\n self.err = err\n pass", "metadata": "root.TestFailedMessage.__init__", "header": "['class', 'TestFailedMessage', '(', ')', ':', '___EOS___']", "index": 147 }, { "content": " def __call__(self, receiver):\n receiver.executeTestFailed(self.test, self.err)\n pass", "metadata": "root.TestFailedMessage.__call__", "header": "['class', 'TestFailedMessage', '(', ')', ':', '___EOS___']", "index": 152 }, { "content": " def __init__(self, test, err):\n self.test = test\n self.err = err\n pass", "metadata": "root.TestErroredMessage.__init__", "header": "['class', 'TestErroredMessage', '(', ')', ':', '___EOS___']", "index": 158 }, { "content": " def __call__(self, receiver):\n receiver.executeTestErrored(self.test, self.err)\n pass", "metadata": "root.TestErroredMessage.__call__", "header": "['class', 'TestErroredMessage', '(', ')', ':', '___EOS___']", "index": 163 }, { "content": " def __init__(self, test):\n self.test = test\n pass", "metadata": "root.TestFinishedMessage.__init__", "header": "['class', 'TestFinishedMessage', '(', ')', ':', '___EOS___']", "index": 169 }, { "content": " def __call__(self, receiver):\n receiver.executeTestFinished(self.test)\n pass", "metadata": "root.TestFinishedMessage.__call__", "header": "['class', 'TestFinishedMessage', '(', ')', ':', '___EOS___']", "index": 173 }, { "content": " def __call__(self, receiver):\n receiver.executeStopped()\n pass", "metadata": "root.StoppedMessage.__call__", "header": "['class', 'StoppedMessage', '(', ')', ':', '___EOS___']", "index": 182 }, { "content": " def bgRunner(self): \n print \"start thread\"\n print \"actually running\"\n self.test.run(self.currentResult)\n print \"done running\"\n self.notifyStopped()\n pass", "metadata": "root.EnhancedGUIRunner.bgRunner", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 263 }, { "content": " def notifyStopped(self):\n self.queue.put(StoppedMessage())\n pass", "metadata": "root.EnhancedGUIRunner.notifyStopped", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 426 }, { "content": " def executeStopped(self):\n print \"got a stop\"\n self.stopGoButton.config(state=tk.ACTIVE)\n self.stopGoButton.config(command=self.runClicked, text=\"Start\")\n self.statusVar.set(\"Idle\")\n self.top.update_idletasks()\n self.running = 0\n pass", "metadata": "root.EnhancedGUIRunner.executeStopped", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 430 }, { "content": " def notifyTestStarted(self, test):\n self.queue.put(TestStartedMessage(test))\n pass", "metadata": "root.EnhancedGUIRunner.notifyTestStarted", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 439 }, { "content": " def setDisplayStatus(self, position, status):\n str = self.errorListbox.get(position)\n parts = str.split(': ', 1)\n if len(parts) == 2:\n if parts[0] == 'FAILED' or parts[0] == 'ERROR':\n return\n else:\n str = parts[1]\n str = status + ': ' + str\n self.errorListbox.insert(position, str)\n self.errorListbox.delete(position + 1)\n if status == 'RUNNING':\n self.errorListbox.itemconfig(position, fg='blue')\n elif status == 'FAILED':\n self.errorListbox.itemconfig(position, fg='red')\n elif status == 'ERROR':\n self.errorListbox.itemconfig(position, fg='red')\n elif status == 'SUCCESS':\n self.errorListbox.itemconfig(position, fg='darkgreen')\n if position > 0:\n self.errorListbox.select_clear(position-1)\n self.errorListbox.select_set(position)\n self.errorListbox.see(min(position+4, self.errorListbox.size()) )\n pass", "metadata": "root.EnhancedGUIRunner.setDisplayStatus", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 443 }, { "content": " def executeTestStarted(self, test):\n self.statusVar.set(str(test))\n self.setDisplayStatus(self.currentTestIndex, 'RUNNING')\n self.top.update_idletasks()\n pass", "metadata": "root.EnhancedGUIRunner.executeTestStarted", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 468 }, { "content": " def notifyTestFailed(self, test, err):\n if self.stopOnErrorVar.get() == 1:\n self.currentResult.stop()\n self.queue.put(TestFailedMessage(test, err))\n pass", "metadata": "root.EnhancedGUIRunner.notifyTestFailed", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 474 }, { "content": " def executeTestFailed(self, test, err):\n self.failCountVar.set(1 + self.failCountVar.get())\n #self.errorListbox.insert(tk.END, \"Failure: %s\" % test)\n self.errorInfo.append((test,err))\n self.setDisplayStatus(self.currentTestIndex, 'FAILED')\n pass", "metadata": "root.EnhancedGUIRunner.executeTestFailed", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 480 }, { "content": " def notifyTestErrored(self, test, err):\n if self.stopOnErrorVar.get() == 1:\n self.currentResult.stop()\n self.queue.put(TestErroredMessage(test, err))\n pass", "metadata": "root.EnhancedGUIRunner.notifyTestErrored", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 487 }, { "content": " def executeTestErrored(self, test, err):\n self.errorCountVar.set(1 + self.errorCountVar.get())\n #self.errorListbox.insert(tk.END, \"Error: %s\" % test)\n self.errorInfo.append((test,err))\n self.setDisplayStatus(self.currentTestIndex, 'ERROR')\n pass", "metadata": "root.EnhancedGUIRunner.executeTestErrored", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 493 }, { "content": " def notifyTestFinished(self, test):\n self.queue.put(TestFinishedMessage(test))\n pass", "metadata": "root.EnhancedGUIRunner.notifyTestFinished", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 500 }, { "content": " def executeTestFinished(self, test):\n self.remainingCountVar.set(self.remainingCountVar.get() - 1)\n self.runCountVar.set(1 + self.runCountVar.get())\n fractionDone = float(self.runCountVar.get())/float(self.totalTests)\n fillColor = (self.errorCountVar.get() > 0 or self.failCountVar.get() > 0) \\\n and \"red\" or \"darkgreen\"\n self.progressBar.setProgressFraction(fractionDone, fillColor)\n soFar = time.clock() - self.runStartTime\n self.averageVar.set(time.strftime(\"%M:%S\", \n time.localtime(soFar / self.runCountVar.get())))\n self.setDisplayStatus(self.currentTestIndex, 'SUCCESS')\n if self.currentTestIndex >= len(self.errorInfo):\n # no error, so pad the error list for this test\n self.errorInfo.append((test,None))\n self.currentTestIndex = self.currentTestIndex + 1\n pass", "metadata": "root.EnhancedGUIRunner.executeTestFinished", "header": "['class', 'EnhancedGUIRunner', '(', ')', ':', '___EOS___']", "index": 504 } ]

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[ { "content": "@files( \"genome.fasta\", \"genome.fa\" )\ndef indexGenome( infile, outfile ):\n '''index the genome for samtools.\n\n Samtools does not like long lines, so create a new file\n with split lines (what a waste).\n '''\n\n statement = '''fold %(infile)s > %(outfile)s'''\n P.run()\n \n pysam.faidx( outfile )", "metadata": "root.indexGenome", "header": "['module', '___EOS___']", "index": 137 }, { "content": "@files( \"genome.fasta\", \"genome_gc.bed\" )\ndef buildGenomeGCSegmentation( infile, outfile ):\n '''segment the genome into windows according to G+C content.'''\n\n to_cluster = True\n \n statement = '''\n python %(scriptsdir)s/fasta2bed.py \\\n --method=fixed-width-windows --window-size=1000 \\\n --log=%(outfile)s.log \\\n < %(genome)s.fasta > %(outfile)s'''\n\n P.run()", "metadata": "root.buildGenomeGCSegmentation", "header": "['module', '___EOS___']", "index": 171 }, { "content": "@files( ( ( PARAMS[\"filename_regions_of_interest\"], \"roi.import\" ),\n ( PARAMS[\"filename_selection\"], \"selection.import\" ) ) )\ndef importRegionsOfInterest( infile, outfile ):\n '''import regions of interest.'''\n \n table = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --dialect=excel \\\n --index=class \\\n --index=roi_id \\\n --map=roi_id:str \\\n --map=start:int \\\n --map=end:int \\\n --table=%(table)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importRegionsOfInterest", "header": "['module', '___EOS___']", "index": 310 }, { "content": "@merge( PARAMS[\"filename_snps_of_interest\"], \"snps_of_interest.import\" )\ndef importSNPsOfInterest( infile, outfile ):\n '''import regions of interest.'''\n \n table = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --dialect=excel \\\n --index=snp \\\n --map=snp:str \\\n --map=pos:int \\\n --table=%(table)s \\\n < %(infile)s \n > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importSNPsOfInterest", "header": "['module', '___EOS___']", "index": 723 }, { "content": "@files( [ (\"%s.bed\" % x, \"%s_intervals.import\" % x) for x in TRACKS_REFERENCE ] )\ndef importReferenceIntervals( infile, outfile ):\n '''import reference intervals'''\n\n ## add the bed intervals back to table\n track = infile[:-len(\".bed\")]\n\n tmpfile = tempfile.NamedTemporaryFile(delete=False)\n tmpfilename = tmpfile.name\n\n headers = (\"AvgVal\",\"DisttoStart\",\"GeneList\",\"Length\",\n \"PeakCenter\",\"PeakVal\",\"Position\",\n \"interval_id\",\"nCpGs\",\"nGenes\",\"nPeaks\",\n \"nProbes\",\"nPromoters\", \n \"contig\",\"start\",\"end\" )\n\n avgval,contig,disttostart,end,genelist,length,peakcenter,peakval,position,start,interval_id,ncpgs,ngenes,npeaks,nprobes,npromoters = \\\n 0,\"\",0,0,\"\",0,0,0,0,0,0,0,0,0,0,0,\n\n tmpfile.write( \"\\t\".join( headers ) + \"\\n\" )\n\n for line in open( infile, \"r\" ):\n contig, start, end, interval_id = line[:-1].split(\"\\t\")[:4]\n start, end = int(start), int(end)\n length = end - start\n npeaks, peakcenter = 1, start + int(length / 2)\n avgval, peakval, nprobes = 1, 1, 1\n\n tmpfile.write( \"\\t\".join( map( str, (avgval,disttostart,genelist,length,peakcenter,peakval,position,interval_id,ncpgs,ngenes,npeaks,nprobes,npromoters, contig,start,end) )) + \"\\n\" )\n\n tmpfile.close()\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=interval_id \\\n --table=%(track)s_intervals \\\n < %(tmpfilename)s > %(outfile)s\n '''\n\n P.run()\n\n os.unlink( tmpfile.name )", "metadata": "root.importReferenceIntervals", "header": "['module', '___EOS___']", "index": 773 }, { "content": " @transform( \"*.intervals\", suffix(\".intervals\"), \"_intervals.import\" )\n def importIntervals( infile, outfile ):\n\n ## add the bed intervals back to table\n track = infile[:-len(\".intervals\")]\n\n tmpfile = tempfile.NamedTemporaryFile(delete=False)\n tmpfilename = tmpfile.name\n map_id2coords = {}\n for line in open( track + \".bed\", \"r\" ):\n contig, start, end, id = line[:-1].split(\"\\t\")[:4]\n map_id2coords[id] = (contig, start, end )\n\n for line in open( infile ):\n if line.startswith( \"interval_id\"):\n tmpfile.write( \"%s\\t%s\\t%s\\t%s\\n\" % ((line[:-1],\"contig\",\"start\",\"end\") ) )\n else:\n id = line[:-1].split( \"\\t\")[0]\n try:\n tmpfile.write( \"%s\\t%s\\t%s\\t%s\\n\" % ((line[:-1],) + map_id2coords[id]))\n except KeyError:\n P.warn( \"%s -> interval %s - omitted due to mapping problems\" % (infile, id) )\n\n tmpfile.close()\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=interval_id \\\n --table=%(track)s_intervals \\\n < %(tmpfilename)s > %(outfile)s\n '''\n\n P.run()\n\n os.unlink( tmpfile.name )", "metadata": "root.importIntervals", "header": "['module', '___EOS___']", "index": 891 }, { "content": " @follows( indexGenome )\n @transform( PARAMS[\"filename_reads\"], \n regex(\"(\\S+).export.txt.gz\"), \n r\"\\1.bam\" )\n def buildBAM( infile, outfile ):\n '''re-map eland formatted reads with bowtie\n '''\n to_cluster = True\n\n # require 4Gb of free memory\n job_options = \"-l mem_free=4000M\"\n\n job_options += \" -q server_jobs.q\"\n\n tmpfilename = P.getTempFilename()\n\n prefix = outfile[:-len(\".bam\")]\n\n statement = '''\n gunzip < %(infile)s |\\\n awk '$11 != \"QC\" || $10 ~ /(\\d+):(\\d+):(\\d+)/ \\\n { if ($1 != \"\") { readname=sprintf( \"%%s_%%s:%%s:%%s:%%s:%%s\", $1,$2,$3,$4,$5,$6);}\n else { readname=sprintf( \"%%s:%%s:%%s:%%s:%%s\", $1,$3,$4,$5,$6); }\n printf(\"@%%s\\\\n%%s\\\\n+\\\\n%%s\\\\n\",readname,$9,$10);}' |\\\n bowtie --sam %(intevals_bowtie_options)s %(intervals_bowtie_index)s - 2>%(outfile)s.log |\\\n samtools import %(genome)s - %(tmpfilename)s >& %(outfile)s.log;\n samtools sort %(tmpfilename)s %(prefix)s;\n samtools index %(outfile)s;\n rm -f %(tmpfilename)s\n '''\n\n P.run()\n\n if os.path.exists( tmpfilename ):\n os.unlink( tmpfilename )", "metadata": "root.buildBAM", "header": "['module', '___EOS___']", "index": 1485 }, { "content": "@files_re( (buildBAM, normalizeBAMPerExperiment, normalizeBAMPerReplicate),\n \"(.*).bam\",\n r\"\\1.bigwig\" )\ndef buildBigwig( infile, outfile ):\n '''convert BAM to bigwig file.'''\n\n # no bedToBigBed on the 32 bit cluster\n to_cluster = True\n job_queue = \"server_jobs.q\"\n\n statement = '''python %(scriptsdir)s/bam2wiggle.py \\\n --genome-file=%(genome)s \\\n --output-format=bigwig \\\n --output-filename=%(outfile)s \\\n %(infile)s \\\n > %(outfile)s.log'''\n \n P.run()", "metadata": "root.buildBigwig", "header": "['module', '___EOS___']", "index": 2314 }, { "content": "@files( ((PARAMS[\"filename_affymetrix\"], \"affymetrix_import\" ),) )\ndef importAffymetrixAnnotation( infile, outfile):\n '''import affymetrix probe annotations.\n '''\n table = \"affymetrix\"\n\n statement = '''\n gunzip < %(infile)s |\\\n sed \"s/probeset_id/probeset/\" |\\\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --dialect=excel \\\n --index=probeset \\\n --index=mrna_id \\\n --table=%(table)s \\\n > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importAffymetrixAnnotation", "header": "['module', '___EOS___']", "index": 2338 }, { "content": "@files( importAffymetrixAnnotation, \"probeset2transcript.table\")\ndef buildProbeset2Transcript( infile, outfile):\n '''build map relating a probeset to a transcript_id, gene_id, ...\n\n 1. only take those that can be mapped to transcripts in table transcripts\n 2. check consistency of location with transcripts in table transcripts\n 3. remove those with cross hybridyzation signals\n\n '''\n\n dbhandle = sqlite3.connect( PARAMS[\"database\"] )\n\n E.debug( \"collecting exons\")\n raise NotImplementError(\"check fastgtf and gzip.\")\n with gzip.open(PARAMS[\"transcripts\"]) as inf:\n exons = GTF.readAndIndex( GTF.iterator( inf ) )\n\n E.debug( \"collecting transcripts\")\n cc = dbhandle.cursor()\n statement = \"SELECT transcript_id, gene_id, source, contig, min(start), max(end), strand FROM transcripts GROUP BY transcript_id, gene_id, source, contig\"\n cc.execute( statement )\n map_transcript2gene = {}\n for transcript_id, gene_id, source, contig, start, end, strand in cc.fetchall():\n map_transcript2gene[transcript_id] = (gene_id, source, contig, start, end, strand )\n\n counter = E.Counter()\n\n cc = dbhandle.cursor()\n statement = \"SELECT probeset, transcript_cluster_id, seqname, start, stop, mrna_assignment, crosshyb_type FROM affymetrix\"\n cc.execute( statement )\n\n outf_notfound = open( outfile + \".notfound\", \"w\")\n outf_notfound.write(\"probeset\\tcause\\tcontig\\tstart\\tend\\tmrna_assignment\\n\" )\n\n outf = open( outfile, \"w\" )\n outf.write( \"probeset\\tcluster_id\\tprobe_contig\\tprobe_start\\tprobe_end\\ttranscript_id\\tgene_id\\tsource\\tcontig\\tstart\\tend\\tstrand\\n\" )\n\n genes_found, transcripts_found = set(), set()\n\n for probeset, transcript_cluster_id, contig, start, end, mrna_assignment, crosshyb_type in cc.fetchall():\n start -= 1 \n if mrna_assignment == \"---\":\n counter.probesets_unassigned += 1\n continue\n\n data = [ x.strip().split(\" // \") for x in mrna_assignment.split(\"///\") ]\n found, mapped, mismapped, nxhyb = 0, 0, 0, 0\n\n # collect transcripts by exon overlap\n try:\n overlaps = [ x[2] for x in exons.get( contig, start, end ) ]\n except KeyError:\n overlaps = []\n\n transcripts = set( [x.transcript_id for x in overlaps ] )\n\n for transcript_id, seqname, score, direct_probes, possible_probes, xhyb in data:\n\n if xhyb != \"0\":\n nxhyb += 1\n continue\n\n # collect transcripts from annotation file\n if transcript_id.startswith(\"ENST\"):\n found += 1\n \n try:\n gene_id, other_source, other_contig, other_start, other_end, other_strand = map_transcript2gene[transcript_id]\n except KeyError:\n continue\n\n mapped += 1\n\n if transcript_id not in transcripts:\n mismapped += 1\n continue\n \n if other_contig != contig or \\\n min(other_end,end) - max(other_start, start) < 0:\n mismapped += 1\n continue\n\n outf.write(\"%s\\t%s\\t%s\\t%i\\t%i\\t%s\\t%s\\t%s\\t%s\\t%i\\t%i\\t%s\\n\" % \\\n (probeset, transcript_cluster_id, contig, start, end,\n transcript_id, gene_id, other_source,\n other_contig, other_start, other_end, other_strand))\n\n genes_found.add(gene_id)\n transcripts_found.add(transcript_id)\n\n if found == 0: \n counter.probesets_notfound += 1\n code = \"no ENSEMBL\"\n elif mapped == 0:\n counter.probesets_unmapped += 1\n code = \"not in transcripts\"\n elif mapped > 0 and mapped == mismapped:\n counter.probesets_mismapped += 1\n code = \"mismapped\"\n elif mapped > 0 and mapped == nxhyb:\n counter.probesets_crosshyb += 1\n code = \"cross-hybridized\"\n elif mapped > 0 and mapped == nxhyb + mismapped:\n counter.probesets_errors += 1\n code = \"errors\"\n else:\n counter.probesets_found += 1\n code = None\n\n if code:\n outf_notfound.write(\"%s\\t%s\\t%s\\t%i\\t%i\\t%s\\n\" % (probeset, code, contig, start, end, mrna_assignment) )\n\n outf_notfound.close()\n outf.close()\n\n E.info( \"mapping results: %s\" % str(counter))\n E.info( \"genes found: %i(%5.2f%%): transcripts found %i(%5.2f%%)\" %\\\n (len(genes_found),\n 100.0 * len(genes_found) / len( set( [x[0] for x in map_transcript2gene.values()]) ),\n len(transcripts_found),\n 100.0 * len(transcripts_found) / len( map_transcript2gene.keys() ) ) )", "metadata": "root.buildProbeset2Transcript", "header": "['module', '___EOS___']", "index": 2362 }, { "content": "@transform( buildProbeset2Transcript, suffix(\".table\"), \"_table.import\" )\ndef importProbeset2Transcript( infile, outfile):\n\n table = outfile[:-len(\"_table.import\")] \n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=probeset \\\n --index=cluster_id \\\n --index=transcript_id \\\n --index=gene_id \\\n --table=%(table)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importProbeset2Transcript", "header": "['module', '___EOS___']", "index": 2489 }, { "content": "@transform( buildExpressionTracks, suffix(\".data\"), \"_data.import\" )\ndef importExpressionTracks( infile, outfile):\n\n table = outfile[:-len(\"_data.import\")] + \"_levels\"\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=cluster_id \\\n --table=%(table)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importExpressionTracks", "header": "['module', '___EOS___']", "index": 2653 }, { "content": "@transform( (buildExpressionCorrelation, buildExpressionFullCorrelation),\n suffix(\".correlation\"), \"_correlation.import\" )\ndef importExpressionCorrelation( infile, outfile):\n\n table = outfile[:-len(\".import\")] \n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=track \\\n --table=%(table)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importExpressionCorrelation", "header": "['module', '___EOS___']", "index": 2782 }, { "content": "@transform( buildExpressionTracks, suffix(\".table\"), \"_table.import\" )\ndef importExpressionProbesets( infile, outfile):\n\n table = outfile[:-len(\"_table.import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=cluster_id \\\n --index=mrna_id \\\n --index=genesymbol \\\n --table=%(table)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importExpressionProbesets", "header": "['module', '___EOS___']", "index": 2802 }, { "content": "@transform( buildExpressionTracks, suffix(\".map\"), \"_map.import\" )\ndef importExpressionMap( infile, outfile):\n\n table = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --table=%(table)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importExpressionMap", "header": "['module', '___EOS___']", "index": 2823 }, { "content": "@files_re( [ x for x in glob.glob(\"run*.bed\") if not isReplicate( x[:-len(\"bed\")] ) ],\n \"(.*).bed\", \n (r\"\\1.bed\", TARGET_PROBESET),\n r\"\\1.assoc\" )\ndef buildIntervalProbesetAssociations( infiles, outfile ):\n '''build association between probesets and intervals.'''\n\n to_cluster = True\n infile, probeset = infiles\n statement = \"\"\"\n cat < %(infile)s |\\\n python %(scriptsdir)s/bed2gff.py --as-gtf |\\\n\tpython %(scriptsdir)s/gtf2table.py \\\n\t\t--counter=neighbours \\\n\t\t--log=%(outfile)s.log \\\n\t\t--filename-gff=%(probeset)s \\\n --proximal-distance=%(proximal_distance)s \\\n\t\t--genome-file=%(genome)s |\\\n python %(toolsdir)s\\table2graph.py \\\n --headers=id,probeset \\\n\t> %(outfile)s\"\"\"\n\n P.run()", "metadata": "root.buildIntervalProbesetAssociations", "header": "['module', '___EOS___']", "index": 2840 }, { "content": "@files_re( buildIntervalProbesetAssociations,\n \"(.*).assoc\",\n r\"\\1_assoc.import\")\ndef importIntervalProbesetAssociations( infile, outfile):\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=id \\\n --index=probeset \\\n --table=%(tablename)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importIntervalProbesetAssociations", "header": "['module', '___EOS___']", "index": 2867 }, { "content": "@merge( (exportReferenceAsBed, exportIntervalsAsBed, \n [\"%s.bed\" % x for x in TRACKS_REFERENCE ] ),\n \"intervals.overlap\" )\ndef buildOverlap( infiles, outfile ):\n '''compute overlap between intervals.\n '''\n\n if os.path.exists(outfile): \n os.rename( outfile, outfile + \".orig\" )\n options = \"--update=%s.orig\" % outfile\n else:\n options = \"\"\n\n infiles = \" \".join(IOTools.flatten(infiles))\n\n statement = '''\n python %(scriptsdir)s/diff_bed.py \n --log=%(outfile)s.log \n %(options)s \n %(infiles)s \n > %(outfile)s\n '''\n P.run()", "metadata": "root.buildOverlap", "header": "['module', '___EOS___']", "index": 2960 }, { "content": "@transform( buildOverlap, suffix(\".overlap\"), \"_overlap.import\" )\ndef importOverlap( infile, outfile ):\n '''import overlap results.\n '''\n\n tablename = \"overlap\"\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \n --index=set1 \n --index=set2 \n --table=%(tablename)s \n < %(infile)s \n > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importOverlap", "header": "['module', '___EOS___']", "index": 2987 }, { "content": "@merge( (exportUCSCEncodeTracks, \n exportReferenceAsBed, \n [\"%s.bed\" % x for x in TRACKS_REFERENCE ],\n combineConditions,\n combineUnstim,\n combineReplicates ),\n \"ucsc.overlap\" )\ndef buildUCSCOverlap( infiles, outfile ):\n '''compute overlap between intervals and the ucsc tracks.\n '''\n\n if os.path.exists(outfile): \n os.rename( outfile, outfile + \".orig\" )\n options = \"--update=%s.orig\" % outfile\n else:\n options = \"\"\n\n to_cluster = True\n\n infiles = \" \".join(IOTools.flatten(infiles))\n statement = '''\n python %(scriptsdir)s/diff_bed.py \n --tracks \n --log=%(outfile)s.log\n %(options)s \n %(infiles)s \n > %(outfile)s\n '''\n\n P.run()", "metadata": "root.buildUCSCOverlap", "header": "['module', '___EOS___']", "index": 3008 }, { "content": "@transform( buildUCSCOverlap, suffix(\".overlap\"), \"_overlap.import\" )\ndef importUCSCOverlap( infile, outfile ):\n '''import overlap results.\n '''\n\n tablename = \"ucsc_overlap\"\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=set1 \\\n --index=set2 \\\n --table=%(tablename)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importUCSCOverlap", "header": "['module', '___EOS___']", "index": 3042 }, { "content": "@files( [( [\"%s%s.norm.bam\" % (x,y) for y in REPLICATES], \"%s.readcorrelations.gz\" % x) for x in TRACKS_EXPERIMENTS ] )\ndef makeReadCorrelation( infiles, outfile ):\n '''compute correlation between reads.\n '''\n\n to_cluster = True\n job_options = \"-l mem_free=8000M\"\n\n infiles = \" \".join(infiles)\n\n statement = '''\n python %(scriptsdir)s/bam_correlation.py \\\n --log=%(outfile)s.log \\\n --genome=%(genome)s \\\n %(infiles)s | gzip > %(outfile)s\n ''' \n\n P.run()", "metadata": "root.makeReadCorrelation", "header": "['module', '___EOS___']", "index": 3165 }, { "content": "@transform( exportMotifSequences, suffix(\".fasta\"), \".meme\")\ndef runMEME( infile, outfile ):\n '''run MEME on all intervals and motifs.\n\n In order to increase the signal/noise ratio,\n MEME is not run on all intervals but only the \n top 10% of intervals (peakval) are used. \n Also, only the segment of 200 bp around the peak\n is used and not the complete interval.\n\n * Softmasked sequence is converted to hardmasked\n sequence to avoid the detection of spurious motifs.\n\n * Sequence is run through dustmasker\n '''\n to_cluster = True\n job_queue = \"medium_jobs.q\"\n job_options = \"-l mem_free=8000M\"\n\n target_path = os.path.join( os.path.abspath(PARAMS[\"exportdir\"]), \"meme\", outfile )\n\n dbhandle = sqlite3.connect( PARAMS[\"database\"] )\n fasta = IndexedFasta.IndexedFasta( PARAMS[\"genome\"] )\n\n track = infile[:-len(\".fasta\")]\n cc = dbhandle.cursor()\n statement = \"SELECT peakcenter, interval_id, contig FROM %s_intervals ORDER BY peakval DESC\" % track\n cc.execute( statement )\n data = cc.fetchall()\n cc.close()\n\n cutoff = len(data) // 10\n # maximum size of data set (in characters)\n maxsize = int(PARAMS[\"motifs_meme_max_size\"])\n\n E.info( \"runMeme: %s: using at most %i sequences for pattern finding\" % (track, cutoff) )\n\n fasta = IndexedFasta.IndexedFasta( PARAMS[\"genome\"] )\n\n tmpdir = tempfile.mkdtemp( dir = \".\" )\n tmpfasta = os.path.join( tmpdir, \"in.fa\")\n outs = open( tmpfasta , \"w\" )\n\n masker = Masker.MaskerDustMasker()\n\n hw = int(PARAMS[\"motifs_meme_halfwidth\"])\n current_size, nseq = 0, 0\n for peakcenter, id, contig in data[:cutoff]:\n start, end = peakcenter - hw, peakcenter + hw\n id = \"%s_%s %s:%i..%i\" % (track, str(id), contig, start, end)\n seq = fasta.getSequence( contig, \"+\", start, end )\n\n if PARAMS[\"motifs_meme_masker\"] == \"repeatmasker\":\n # the genome sequence is repeat masked\n masked_seq = seq\n elif PARAMS[\"motifs_meme_masker\"] == \"dustmasker\":\n masked_seq = masker( seq.upper() )\n\n # hard mask softmasked characters\n masked_seq = re.sub( \"[a-z]\",\"N\", masked_seq )\n current_size += len(masked_seq)\n if current_size >= maxsize: \n E.info( \"runMEME: %s: maximum size (%i) reached - only %i sequences output\" % (track, maxsize, nseq))\n break\n nseq += 1\n outs.write( \">%s\\n%s\\n\" % (id, masked_seq))\n\n outs.close()\n\n statement = '''\n %(motifs_execmeme)s %(tmpfasta)s -dna -revcomp \n -mod %(motifs_meme_model)s \n -nmotifs %(motifs_meme_nmotifs)s \n -oc %(tmpdir)s \n -maxsize %(maxsize)s \n %(motifs_meme_options)s \n > %(outfile)s.log\n '''\n P.run()\n\n # copy over results\n try:\n os.makedirs( os.path.dirname( target_path ) )\n except OSError: \n # ignore \"file exists\" exception\n pass\n\n if os.path.exists( target_path ): shutil.rmtree( target_path )\n shutil.move( tmpdir, target_path )\n\n shutil.copyfile( os.path.join(target_path, \"meme.txt\"), outfile)", "metadata": "root.runMEME", "header": "['module', '___EOS___']", "index": 3299 }, { "content": "@transform( exportMotifSequences, suffix(\".fasta\"), \".glam2\")\ndef runGLAM2( infile, outfile ):\n '''run glam2 on all intervals and motifs.\n\n In order to increase the signal/noise ratio,\n MEME is not run on all intervals but only the \n top 10% of intervals (peakval) are used. \n Also, only the segment of 200 bp around the peak\n is used and not the complete interval.\n\n * Softmasked sequence is converted to hardmasked\n sequence to avoid the detection of spurious motifs.\n\n * Sequence is run through dustmasker\n '''\n to_cluster = True\n job_queue = \"server_jobs.q\"\n\n target_path = os.path.join( os.path.abspath( PARAMS[\"exportdir\"] ), \"glam2\", outfile )\n track = infile[:-len(\".fasta\")]\n\n tmpdir = tempfile.mkdtemp()\n tmpfasta = os.path.join( tmpdir, \"in.fa\")\n\n nseq = writeSequencesForIntervals( track, tmpfasta,\n full = False,\n halfwidth = int(PARAMS[\"motifs_meme_halfwidth\"]),\n maxsize = int(PARAMS[\"motifs_meme_max_size\"]),\n proportion = 0.1 )\n\n min_sequences = int(nseq / 10.0)\n statement = '''\n %(motifs_execglam2)s -2 -O %(tmpdir)s %(motifs_glam2_options)s -z %(min_sequences)i n %(tmpfasta)s > %(outfile)s.log\n '''\n P.run()\n\n # copy over results\n try:\n os.makedirs( os.path.dirname( target_path ) )\n except OSError: \n # ignore \"file exists\" exception\n pass\n\n if os.path.exists( target_path ): shutil.rmtree( target_path )\n shutil.move( tmpdir, target_path )\n\n shutil.copyfile( os.path.join(target_path, \"glam2.txt\"), outfile)", "metadata": "root.runGLAM2", "header": "['module', '___EOS___']", "index": 3517 }, { "content": " @follows( makeMotifs )\n @transform( runMEME, suffix(\".meme\"), \".tomtom\" )\n def runTomTom( infile, outfile ):\n '''compare ab-initio motifs against tomtom.'''\n to_cluster = True\n statement = '''\n %(motifs_exectomtom)s -text -query %(motifs_tomtom_master_motif)s -target %(infile)s > %(outfile)s\n '''\n P.run()", "metadata": "root.runTomTom", "header": "['module', '___EOS___']", "index": 3579 }, { "content": " @transform( runTomTom, suffix(\".tomtom\"), \"_tomtom.import\" )\n def importTomTom( infile, outfile ):\n '''compare ab-initio motifs against tomtom.'''\n\n tmpfile = P.getTempFile()\n\n tmpfile.write( \"\\t\".join( \\\n (\"query_id\", \"target_id\",\n \"optimal_offset\", \"pvalue\", \"qvalue\", \"overlap\", \"query_consensus\",\n \"target_consensus\", \"orientation\") ) + \"\\n\" )\n\n for line in open( infile, \"r\" ):\n if line.startswith( \"#Query\" ): continue\n (query_id, target_id, \n optimal_offset, pvalue, qvalue, overlap, query_consensus,\n target_consensus, orientation) = line[:-1].split(\"\\t\")\n tmpfile.write( line )\n\n tmpfile.close()\n\n tmpname = tmpfile.name\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --allow-empty \\\n --table=%(tablename)s \\\n < %(tmpname)s > %(outfile)s\n '''\n\n P.run()\n os.unlink( tmpname )", "metadata": "root.importTomTom", "header": "['module', '___EOS___']", "index": 3592 }, { "content": "@follows( makeMotifs, filterMotifs )\n@files_re( (exportMotifSequences, exportMotifControlSequences),\n \"(\\S+).controlfasta\",\n [ r\"\\1.controlfasta\", r\"\\1.fasta\", glob.glob(\"*.motif\")],\n r\"\\1.mast.gz\" )\ndef runMAST( infiles, outfile ):\n '''run mast on all intervals and motifs.\n\n Collect all results for an E-value up to 10000 so that\n all sequences are output and MAST curves can be computed. \n\n 10000 is a heuristic.\n '''\n to_cluster = True\n job_queue = \"medium_jobs.q\"\n # only use new nodes, as /bin/csh is not installed\n # on the old ones.\n job_options = \"-l mem_free=8000M\"\n\n controlfile, dbfile, motiffiles = infiles\n controlfile = dbfile[:-len(\".fasta\")] + \".controlfasta\"\n if not os.path.exists( controlfile ):\n raise P.PipelineError( \"control file %s for %s does not exist\" % (controlfile, dbfile))\n\n if os.path.exists(outfile): os.remove( outfile )\n\n for motiffile in motiffiles:\n if IOTools.isEmpty( motiffile ):\n E.info( \"skipping empty motif file %s\" % motiffile )\n continue\n\n of = gzip.open(outfile, \"a\")\n motif, x = os.path.splitext( motiffile )\n of.write(\":: motif = %s ::\\n\" % motif )\n of.close()\n\n statement = '''\n cat %(dbfile)s %(controlfile)s \n | %(motifs_execmast)s %(motiffile)s -stdin -stdout -text -ev %(motifs_mast_evalue)f \n | gzip \n >> %(outfile)s\n '''\n P.run()", "metadata": "root.runMAST", "header": "['module', '___EOS___']", "index": 3673 }, { "content": "@transform( exportMotifSequences,\n suffix(\".fasta\"),\n \".bioprospector\")\ndef runBioProspector( infiles, outfile ):\n '''run bioprospector for motif discovery.\n\n Bioprospector is run on only the top 10% of peaks.\n '''\n to_cluster = True\n\n # only use new nodes, as /bin/csh is not installed\n # on the old ones.\n job_options = \"-l mem_free=8000M\"\n\n tmpfasta = P.getTempFilename( \".\" )\n track = outfile[:-len(\".bioprospector\")]\n nseq = writeSequencesForIntervals( track,\n tmpfasta,\n full = True,\n masker = \"dust\",\n proportion = 0.10 )\n\n statement = '''\n %(motifs_execbioprospector)s -i %(tmpfasta)s %(motifs_bioprospector_options)s -o %(outfile)s > %(outfile)s.log\n '''\n P.run()\n\n os.unlink( tmpfasta )", "metadata": "root.runBioProspector", "header": "['module', '___EOS___']", "index": 3720 }, { "content": "def _runNubiscanMotifSearch( infile, outfile, motif, mode=\"straight\" ):\n '''run NUBISCAN to find matches to nuclear receptors.\n '''\n\n to_cluster = True\n job_options = \"-l mem_free=8000M\"\n\n track = re.sub( \".nubiscan.*\", \"\", outfile )\n tmpfasta = P.getTempFilename( \".\" )\n\n if mode == \"shuffled\":\n nseq = writeSequencesForIntervals( track,\n tmpfasta,\n full = False,\n halfwidth = 100,\n shuffled = True )\n elif mode == \"shifted\":\n nseq = writeSequencesForIntervals( track,\n tmpfasta,\n full = False,\n halfwidth = 100,\n offset = -1000000)\n elif mode == \"straight\":\n nseq = writeSequencesForIntervals( track,\n tmpfasta,\n full = False,\n halfwidth = 100 )\n else:\n raise ValueError(\"invalid mode `%s`\" % mode )\n\n\n arrangements = \",\".join( PARAMS[\"motifs_nubiscan_arrangements\"] )\n\n statement = '''python %(scriptsdir)s/run_nubiscan.py \\\n --qvalue=%(motifs_nubiscan_qvalue)f \\\n --iterations=%(motifs_nubiscan_iterations)i \\\n --arrangements=%(arrangements)s \\\n --motif=%(motif)s \\\n --mask=dust \\\n --add-sequence \\\n --log=%(outfile)s.log \\\n < %(tmpfasta)s > %(outfile)s'''\n\n P.run()\n\n os.unlink( tmpfasta )", "metadata": "root._runNubiscanMotifSearch", "header": "['module', '___EOS___']", "index": 3874 }, { "content": "@files( [ (\"%s.bed\" % x, \"%s.annotations\" % x ) for x in TRACKS_ANNOTATE] )\ndef annotateIntervals( infile, outfile ):\n '''classify chipseq intervals according to their location \n with respect to the gene set.\n '''\n to_cluster = True\n statement = \"\"\"\n cat < %(infile)s \n | python %(scriptsdir)s/bed2gff.py --as-gtf \n | python %(scriptsdir)s/gtf2table.py \n --counter=position \n --counter=classifier-chipseq \n --section=exons \n --counter=length \n --log=%(outfile)s.log \n --filename-gff=%(annotation)s \n --genome-file=%(genome)s\n > %(outfile)s\"\"\"\n\n P.run()", "metadata": "root.annotateIntervals", "header": "['module', '___EOS___']", "index": 4274 }, { "content": "def straightImport( infile, outfile, options = \"\" ):\n '''straight import from gtf2table results.\n\n The table name is given by outfile without the\n \".import\" suffix.\n '''\n\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=gene_id \\\n %(options)s \\\n --table=%(tablename)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.straightImport", "header": "['module', '___EOS___']", "index": 4298 }, { "content": "@files( [ (\"%s.bed\" % x, \"%s.tracks\" % x, \"ucsc_encode.bed\" ) for x in TRACKS_ANNOTATE] )\ndef annotateTracks( infile, outfile, trackfile ):\n '''annotate intervals by track overlap\n '''\n\n statement = \"\"\"\n python %(scriptsdir)s/bed2table.py \n --counter=overlap \n --log=%(outfile)s.log \n --filename-bed=%(trackfile)s \n --genome-file=%(genome)s\n < %(infile)s\n | perl -p -e \"s/name/gene_id/\" \n > %(outfile)s\"\"\"\n\n P.run()", "metadata": "root.annotateTracks", "header": "['module', '___EOS___']", "index": 4330 }, { "content": "@follows( buildGeneRegions )\n@files( [ (\"%s.bed\" % x, \"%s.tss\" % x ) for x in TRACKS_ANNOTATE ] )\ndef annotateTSS( infile, outfile ):\n\n to_cluster = True\n statement = \"\"\"\n cat < %(infile)s |\\\n python %(scriptsdir)s/bed2gff.py --as-gtf |\\\n python %(scriptsdir)s/gtf2table.py \\\n --counter=distance-tss \\\n --log=%(outfile)s.log \\\n --filename-gff=%(transcripts_tss)s \\\n --genome-file=%(genome)s\n > %(outfile)s\"\"\"\n\n P.run()", "metadata": "root.annotateTSS", "header": "['module', '___EOS___']", "index": 4361 }, { "content": "@files( [ (\"%s.bed\" % x, \"%s.repeats\" % x ) for x in TRACKS_ANNOTATE ] )\ndef annotateRepeats( infile, outfile ):\n '''count the overlap between intervals and repeats.'''\n\n to_cluster = True\n statement = \"\"\"\n cat < %(infile)s |\\\n python %(scriptsdir)s/bed2gff.py --as-gtf |\\\n python %(scriptsdir)s/gtf2table.py \\\n --counter=overlap \\\n --log=%(outfile)s.log \\\n --filename-gff=%(repeats)s \\\n --genome-file=%(genome)s\n > %(outfile)s\"\"\"\n\n P.run()", "metadata": "root.annotateRepeats", "header": "['module', '___EOS___']", "index": 4381 }, { "content": "@transform( importExpressionTracks, suffix(\"_data.import\"), \".sam.expdiff\" )\ndef buildExpressionDifferencesSAM( infile, outfile ):\n '''compute stats on expression differences between each set\n and the appropriate unstimulated set using SAM.\n '''\n\n nskipped = 0\n\n track = infile[:-len(\"_data.import\")]\n\n target_path = os.path.join( os.path.abspath( PARAMS[\"exportdir\"] ), \"SAM\" )\n if not os.path.exists( target_path): \n try:\n os.makedirs( target_path )\n except OSError: \n pass\n\n outs = open( outfile, \"w\" )\n outs.write( \"cluster_id\\tmean1\\tstd1\\tmean2\\tstd2\\tpvalue\\tqvalue\\tdiff\\tfold\\tcalled\\n\" )\n\n try:\n control, cluster_ids, treatments, controls = PExpression.getExpressionMeasurements( track )\n except P.PipelineError, msg:\n E.warn(\"skipped: %s\" % msg )\n outs.close()\n return\n\n E.info( \"track=%s, control=%s: computing SAM for %i probesets, %i samples, %i control\" % (track, control,\n len(cluster_ids),\n len(treatments),\n len(controls)))\n\n genes, summary, cutoffs = Expression.SAM()( cluster_ids, treatments, controls,\n pattern = os.path.join(target_path, outfile + \"%s\"),\n fdr = float(PARAMS[\"expression_sam_fdr\"]),\n ngenes = float(PARAMS[\"expression_sam_ngenes\"]),\n ndelta = float(PARAMS[\"expression_sam_ndelta\"]),\n npermutations = PARAMS[\"expression_sam_permutations\"],\n method = PARAMS[\"expression_sam_method\"],\n use_excel_sam = False )\n\n if summary == None:\n E.warn( \"no cutoff when running sam for %s\" % infile )\n\n if cutoffs:\n logs = open( outfile + \".cutoffs\", \"w\" )\n logs.write(\"\\t\".join( cutoffs[0]._fields) + \"\\n\" )\n for x in cutoffs:\n logs.write( \"\\t\".join(map(str,x) ) + \"\\n\" )\n logs.close()\n for s in genes:\n outs.write (\"%s\\t%f\\t%f\\t%f\\t%f\\t%e\\t%f\\t%f\\t%f\\t%i\\n\" % \\\n (s.probeset, \n s.mean1,\n s.stddev1,\n s.mean2,\n s.stddev2,\n s.pvalue, \n s.qvalue, \n s.difference,\n s.fold,\n s.called,\n ) )\n outs.close()", "metadata": "root.buildExpressionDifferencesSAM", "header": "['module', '___EOS___']", "index": 4473 }, { "content": "@transform( (buildExpressionDifferencesSAM, buildExpressionDifferencesTTest), \n suffix(\".expdiff\"), \n \"_expdiff.import\")\ndef importExpressionDifferences( infile, outfile ):\n '''import expression differences.\n '''\n\n track, method, control = PExpression.getExpressionMatch( infile )\n\n if track == control:\n outs = open( outfile, \"w\" )\n outs.close()\n return\n\n tablename = \"%s_vs_%s_%s\" % (track,control,method)\n \n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --allow-empty \\\n --index=cluster_id \\\n --table=%(tablename)s \\\n < %(infile)s > %(outfile)s\n '''\n\n P.run()", "metadata": "root.importExpressionDifferences", "header": "['module', '___EOS___']", "index": 4539 }, { "content": "@files( PARAMS[\"filename_t1d\"], \"t1d.bed\" )\ndef buildDiseaseIntervals( infile, outfile):\n\n reader = csv.reader( open(infile,\"rU\") )\n fasta = IndexedFasta.IndexedFasta( FILENAME_GENOME )\n\n outs = open( outfile, \"w\" )\n\n for row in reader:\n if row[0] == \"Locus\": \n headers = row\n continue\n loc, chrom, start, end = row[:4]\n if loc == \"\": continue\n start, end = int(start)-1, int(end)\n \n contig = fasta.getToken( re.sub(\"[pq]\\d[.0-9]*\", \"\", chrom) )\n\n outs.write(\"%s\\t%i\\t%i\\t%s\\n\" % (contig, start, end, loc) )\n\n outs.close()", "metadata": "root.buildDiseaseIntervals", "header": "['module', '___EOS___']", "index": 5603 }, { "content": "@files( ((PARAMS[\"filename_expression_wang\"], \"expression_wang.import\"), ) )\ndef importExpressionWang( infile, outfile ):\n '''import gene expression data from Wang et al. (2005) \n \n :pmid:`16002434`\n '''\n\n headers = (\n (\"Probe Set ID\", \"probeset\"),\n (\"Accession\", \"accession\"),\n (\"Chromosomal Location\", \"chromosome\"),\n (\"Gene Title\", \"genetitle\"),\n (\"Gene Symbol\", \"genesymbol\"),\n (\"Entrez Gene\", \"entrezgene\"),\n (\"Score\", \"score\"),\n (\"Q-value\", \"qvalue\"),\n (\"Gene Symbol (May2005)\", \"genesymbol1\"),\n (\"Entrez Gene (May 2005)\", \"entrezgene1\"),\n (\"Unigene (Release # 184)\", \"unigene\",),\n (\"DR3 cons.\",\"d3_cons\" ),\n (\"DR3 1 mism.\",\"d3_mismatch\",),\n (\"ER6 cons.\", \"er6_cons\"), )\n\n old_headers = set( [x[0] for x in headers] )\n new_headers = [x[1] for x in headers]\n take = []\n outs = P.getTempFile()\n first = True\n\n reader = csv.reader( open(infile,\"rU\") )\n for row in reader:\n if first:\n first = False\n for x, old_header in enumerate(row ):\n if old_header in old_headers: take.append( x )\n outs.write(\"\\t\".join(new_headers)+ \"\\n\")\n else:\n new_row = []\n for x in take:\n if row[x].strip() != \"---\":\n new_row.append(row[x].strip())\n else:\n new_row.append(\"\")\n outs.write(\"\\t\".join( new_row )+ \"\\n\")\n \n outs.close()\n tmpname = outs.name\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=probeset \\\n --index=genesymbol \\\n --table=%(tablename)s \\\n < %(tmpname)s > %(outfile)s\n '''\n P.run()\n\n os.unlink( tmpname )", "metadata": "root.importExpressionWang", "header": "['module', '___EOS___']", "index": 5630 }, { "content": "@files( ((PARAMS[\"filename_expression_kovalenko\"], \"expression_kovalenko.import\"), ) )\ndef importExpressionKovalenko( infile, outfile ):\n '''import gene expression data from Kovalenko et al. (2010) \n\n Converts negative fold change into ratios and % qvalues\n into qvalues.\n '''\n\n dbhandle = sqlite3.connect( PARAMS[\"database\"] )\n cc = dbhandle.cursor()\n map_name2id = dict( cc.execute( \"SELECT UPPER(gene_name), gene_id FROM gene_info\" ).fetchall() )\n\n headers = (\n (\"affy_id\", \"probeset\"),\n (\"gene_name\", \"gene_id\"),\n (\"fold_6\", \"fold_6\"),\n (\"qvalue_6\", \"qvalue_6\"),\n (\"fold_24\", \"fold_24\"),\n (\"qvalue_24\", \"qvalue_24\"),\n (\"fold_48\", \"fold_48\"),\n (\"qvalue_48\", \"qvalue_48\"),\n )\n\n old_headers = set( [x[0] for x in headers] )\n new_headers = [x[1] for x in headers]\n take = []\n outs = P.getTempFile()\n first = True\n\n counts = E.Counter()\n\n reader = csv.reader( open(infile,\"rU\") )\n notfound = set()\n for row in reader:\n if first:\n first = False\n for x, old_header in enumerate(row ):\n if old_header in old_headers: take.append( x )\n outs.write(\"\\t\".join(new_headers)+ \"\\n\")\n else:\n skip = False\n new_row = []\n for x in take:\n if headers[x][0].startswith(\"fold\"):\n foldval = float( row[x] )\n if foldval < 0: \n row[x] = str( -1.0 / foldval )\n elif headers[x][0].startswith(\"qvalue\"):\n qvalue = float( row[x] )\n row[x] = str(qvalue / 100.0)\n elif headers[x][0].startswith(\"gene_name\"):\n parts = [ c.upper().strip() for c in row[x].split(\"//\") ]\n\n for part in parts:\n if part in map_name2id:\n row[x] = map_name2id[part].upper()\n counts.found += 1\n break\n else:\n counts.notfound += 1\n notfound.add( row[x] )\n skip = True\n break\n\n\n if row[x].strip() != \"---\":\n new_row.append(row[x].strip())\n else:\n new_row.append(\"\")\n \n if skip: continue\n outs.write(\"\\t\".join( new_row )+ \"\\n\")\n\n outs.close()\n tmpname = outs.name\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --index=probeset \\\n --index=gene_id \\\n --table=%(tablename)s \\\n < %(tmpname)s > %(outfile)s\n '''\n P.run()\n\n os.unlink( tmpname )\n\n E.info( \"%s\" % str(counts))\n if notfound:\n E.warn(\"not found: %s\" % str(notfound) )", "metadata": "root.importExpressionKovalenko", "header": "['module', '___EOS___']", "index": 5695 }, { "content": "@transform( buildGeneSet, suffix(\".gtf\"), \"_roi.import\" )\ndef importOverlapRegionsOfInterestEnsembl( infile, outfile ):\n '''compute overlap of intervals with regions of interest.'''\n\n tmpfilename = P.getTempFilename( \".\" )\n \n PGeneset.buildOverlapWithEnsembl( infile, \n tmpfilename,\n \"roi.bed\" )\n\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --allow-empty \\\n --index=interval_id \\\n --index=roi_id \\\n --table=%(tablename)s \\\n < %(tmpfilename)s > %(outfile)s\n '''\n\n P.run()\n \n os.unlink( tmpfilename )\n os.unlink( tmpfilename+\".log\" )", "metadata": "root.importOverlapRegionsOfInterestEnsembl", "header": "['module', '___EOS___']", "index": 5826 }, { "content": "@transform( buildGeneSet, suffix(\".gtf\"), \"_gwas.import\" )\ndef importGWASEnsembl( infile, outfile ):\n '''compute overlap of intervals with regions of interest.'''\n\n tmpfilename = P.getTempFilename( \".\" )\n \n PGeneset.buildOverlapWithEnsembl( infile, \n tmpfilename,\n \"gwas.bed\" )\n\n tablename = outfile[:-len(\".import\")]\n\n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --allow-empty \\\n --index=interval_id \\\n --index=roi_id \\\n --table=%(tablename)s \\\n < %(tmpfilename)s > %(outfile)s\n '''\n\n P.run()\n \n os.unlink( tmpfilename )\n os.unlink( tmpfilename+\".log\" )", "metadata": "root.importGWASEnsembl", "header": "['module', '___EOS___']", "index": 5855 }, { "content": "@follows( buildGeneRegions, importRegionsOfInterest )\n@files( [ ( (\"%s.bed\" % x, \"%s.bed\" % y), \"%s_%s.import\" % (x,y)) \n for x,y in itertools.product( TRACKS_ANNOTATOR, TRACKS_REGIONS) ] )\ndef importOverlapRegions( infiles, outfile ):\n '''compute overlap of infile with bedfile.\n '''\n\n infile, bedfile = infiles\n\n tablename = outfile[:-len(\".import\")]\n to_cluster = True\n statement = '''\n python %(scriptsdir)s/bed2graph.py \\\n --output=name \\\n --log=%(outfile)s \\\n %(infile)s %(bedfile)s |\\\n sed \"s/name1/interval_id/; s/name2/roi_id/\" |\\\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\\n --allow-empty \\\n --index=interval_id \\\n --index=roi_id \\\n --table=%(tablename)s \\\n > %(outfile)s\n '''\n \n P.run()", "metadata": "root.importOverlapRegions", "header": "['module', '___EOS___']", "index": 5884 }, { "content": "@transform( buildSNPCoverage, suffix( \".snpcoverage\" ), \"_snpcoverage.import\")\ndef importSNPCoverage( infile, outfile ):\n\n tablename = outfile[:-len(\".import\")]\n \n statement = '''\n sed \"s/chromosome/contig/\" < %(infile)s |\\\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s \\ \n --allow-empty \\\n --index=snp \\\n --index=genesymbol \\\n --table=%(tablename)s \\\n > %(outfile)s\n '''\n P.run()", "metadata": "root.importSNPCoverage", "header": "['module', '___EOS___']", "index": 5987 } ]

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[ { "content": " def _closeWriteConnection(self):\n try:\n getattr(self.socket, self._socketShutdownMethod)(1)\n except socket.error:\n pass\n p = interfaces.IHalfCloseableProtocol(self.protocol, None)\n if p:\n try:\n p.writeConnectionLost()\n except:\n f = failure.Failure()\n log.err()\n self.connectionLost(f)", "metadata": "root.Connection._closeWriteConnection", "header": "['class', 'Connection', '(', '_TLSConnectionMixin', ',', 'abstract', '.', 'FileDescriptor', ',', '_SocketCloser', ',', '___NL___', '_AbortingMixin', ')', ':', '___EOS___']", "index": 242 }, { "content": " def readConnectionLost(self, reason):\n p = interfaces.IHalfCloseableProtocol(self.protocol, None)\n if p:\n try:\n p.readConnectionLost()\n except:\n log.err()\n self.connectionLost(failure.Failure())\n else:\n self.connectionLost(reason)", "metadata": "root.Connection.readConnectionLost", "header": "['class', 'Connection', '(', '_TLSConnectionMixin', ',', 'abstract', '.', 'FileDescriptor', ',', '_SocketCloser', ',', '___NL___', '_AbortingMixin', ')', ':', '___EOS___']", "index": 257 }, { "content": " def doRead(self):\n \"\"\"Called when my socket is ready for reading.\n\n This accepts a connection and calls self.protocol() to handle the\n wire-level protocol.\n \"\"\"\n try:\n if platformType == \"posix\":\n numAccepts = self.numberAccepts\n else:\n # win32 event loop breaks if we do more than one accept()\n # in an iteration of the event loop.\n numAccepts = 1\n for i in range(numAccepts):\n # we need this so we can deal with a factory's buildProtocol\n # calling our loseConnection\n if self.disconnecting:\n return\n try:\n skt, addr = self.socket.accept()\n except socket.error, e:\n if e.args[0] in (EWOULDBLOCK, EAGAIN):\n self.numberAccepts = i\n break\n elif e.args[0] == EPERM:\n # Netfilter on Linux may have rejected the\n # connection, but we get told to try to accept()\n # anyway.\n continue\n elif e.args[0] in (EMFILE, ENOBUFS, ENFILE, ENOMEM, ECONNABORTED):\n\n # Linux gives EMFILE when a process is not allowed\n # to allocate any more file descriptors. *BSD and\n # Win32 give (WSA)ENOBUFS. Linux can also give\n # ENFILE if the system is out of inodes, or ENOMEM\n # if there is insufficient memory to allocate a new\n # dentry. ECONNABORTED is documented as possible on\n # both Linux and Windows, but it is not clear\n # whether there are actually any circumstances under\n # which it can happen (one might expect it to be\n # possible if a client sends a FIN or RST after the\n # server sends a SYN|ACK but before application code\n # calls accept(2), however at least on Linux this\n # _seems_ to be short-circuited by syncookies.\n\n log.msg(\"Could not accept new connection (%s)\" % (\n errorcode[e.args[0]],))\n break\n raise\n\n fdesc._setCloseOnExec(skt.fileno())\n protocol = self.factory.buildProtocol(self._buildAddr(addr))\n if protocol is None:\n skt.close()\n continue\n s = self.sessionno\n self.sessionno = s+1\n transport = self.transport(skt, protocol, addr, self, s, self.reactor)\n protocol.makeConnection(transport)\n else:\n self.numberAccepts = self.numberAccepts+20\n except:\n # Note that in TLS mode, this will possibly catch SSL.Errors\n # raised by self.socket.accept()\n #\n # There is no \"except SSL.Error:\" above because SSL may be\n # None if there is no SSL support. In any case, all the\n # \"except SSL.Error:\" suite would probably do is log.deferr()\n # and return, so handling it here works just as well.\n log.deferr()", "metadata": "root.Port.doRead", "header": "['class', 'Port', '(', 'base', '.', 'BasePort', ',', '_SocketCloser', ')', ':', '___EOS___']", "index": 1000 } ]

[ { "span": "except:", "start_line": 251, "start_column": 12, "end_line": 251, "end_column": 19 }, { "span": "except:", "start_line": 262, "start_column": 12, "end_line": 262, "end_column": 19 }, { "span": "except:", "start_line": 1061, "start_column": 8, "end_line": 1061, "end_column": 15 } ]

[]

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[ { "content": " def test_schema_upsert(self):\n #old_schema_rows = self.md.schema_tools.lister()\n # add new entry:\n assert self.md.schema_tools.setter(schema_name='uniq-schema',schema_desc='insert result') != 0\n assert len(self.md.schema_tools.lister()) == 2 # init row + just added row\n assert self.md.schema_tools.getter(schema_name='uniq-schema').schema_desc == 'insert result'\n\n # update duplicate entry:\n assert self.md.schema_tools.setter(schema_name='uniq-schema',schema_desc='update result') == 0\n assert len(self.md.schema_tools.lister()) == 2 # no changes since last check\n assert self.md.schema_tools.getter(schema_name='uniq-schema').schema_desc == 'update result'\n\n new_schema_rows = self.md.schema_tools.lister()\n #assert rowproxy_diff(old_schema_rows, new_schema_rows, expected_add_cnt=1, expected_del_cnt=0)", "metadata": "root.TestSchema.test_schema_upsert", "header": "['class', 'TestSchema', '(', 'object', ')', ':', '___EOS___']", "index": 37 }, { "content": " def test_schema_list_and_delete(self):\n assert len(self.md.schema_tools.lister()) == 1\n old_schema_rows = self.md.schema_tools.lister()\n\n assert self.md.schema_tools.deleter(schema_name='geoip') == 1 # delete 1 row\n assert self.md.schema_tools.deleter(schema_name='geoip') == 0 # no rows left\n\n # delete all fields for collection\n for field in self.md.field_tools.lister():\n if field.collection_id == self.collection_id:\n self.md.field_tools.deleter(collection_id=self.collection_id, field_id=field.field_id)\n\n # delete all collections for schema\n for collection in self.md.collection_tools.lister():\n if collection.schema_id == self.schema_id:\n assert self.md.collection_tools.deleter(schema_id=self.schema_id,\n collection_id=collection.collection_id) == 1\n # delete all elements for schema\n for element in self.md.element_tools.lister():\n self.md.element_tools.deleter(element_name=element.element_name)\n\n # delete schema\n self.md.schema_tools.deleter(schema_id=self.schema_id)\n\n # confirm all deletes again:\n assert len(self.md.element_tools.lister()) == 0\n assert len(self.md.field_tools.lister()) == 0\n assert len(self.md.collection_tools.lister()) == 0\n assert len(self.md.schema_tools.lister()) == 0", "metadata": "root.TestSchema.test_schema_list_and_delete", "header": "['class', 'TestSchema', '(', 'object', ')', ':', '___EOS___']", "index": 52 }, { "content": " def test_collection_insert_update(self):\n old_rows = self.md.collection_tools.lister()\n\n kva = {'schema_id' : self.schema_id,\n 'collection_name':'a',\n 'collection_desc':'a1'}\n kvb = {'schema_id' : self.schema_id,\n 'collection_name':'b',\n 'collection_desc':'b1'}\n\n # add new entries:\n assert self.md.collection_tools.setter(**kva) != 0\n assert self.md.collection_tools.setter(**kvb) != 0\n assert len(self.md.collection_tools.lister()) == 3 # init row + just added row\n assert self.md.collection_tools.getter(schema_id=self.schema_id,\n collection_name='b').collection_desc == 'b1'\n assert self.md.collection_tools.getter(**kva).collection_desc == 'a1'\n\n # update duplicate entry:\n kvb['collection_desc'] = 'b2'\n assert self.md.collection_tools.setter(**kvb) == 0\n assert len(self.md.collection_tools.lister()) == 3 # no changes since last check\n assert self.md.collection_tools.getter(**kvb).collection_desc == 'b2'\n\n kvb['collection_desc'] = 'b3'\n assert self.md.collection_tools.setter(**kvb) == 0\n # should be no additions:\n assert len(self.md.collection_tools.lister()) == 3\n # should be changed:\n assert self.md.collection_tools.getter(schema_id=self.schema_id,\n collection_name='b').collection_desc == 'b3'\n # should be no changes to other rows:\n assert self.md.collection_tools.getter(schema_id=self.schema_id,\n collection_name='a').collection_desc == 'a1'", "metadata": "root.TestCollection.test_collection_insert_update", "header": "['class', 'TestCollection', '(', 'object', ')', ':', '___EOS___']", "index": 154 } ]

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[ { "content": "def _get_sql_model_create(model, known_models=set()):\n \"\"\"\n Get the SQL required to create a single model.\n\n Returns list_of_sql, pending_references_dict\n \"\"\"\n from django.db import backend, get_creation_module, models\n data_types = get_creation_module().DATA_TYPES\n\n opts = model._meta\n final_output = []\n table_output = []\n pending_references = {}\n for f in opts.fields:\n if isinstance(f, (models.ForeignKey, models.OneToOneField)):\n rel_field = f.rel.get_related_field()\n data_type = get_rel_data_type(rel_field)\n else:\n rel_field = f\n data_type = f.get_internal_type()\n col_type = data_types[data_type]\n if col_type is not None:\n # Make the definition (e.g. 'foo VARCHAR(30)') for this field.\n field_output = [style.SQL_FIELD(backend.quote_name(f.column)),\n style.SQL_COLTYPE(col_type % rel_field.__dict__)]\n field_output.append(style.SQL_KEYWORD('%sNULL' % (not f.null and 'NOT ' or '')))\n if f.unique:\n field_output.append(style.SQL_KEYWORD('UNIQUE'))\n if f.primary_key:\n field_output.append(style.SQL_KEYWORD('PRIMARY KEY'))\n if f.rel:\n if f.rel.to in known_models:\n field_output.append(style.SQL_KEYWORD('REFERENCES') + ' ' + \\\n style.SQL_TABLE(backend.quote_name(f.rel.to._meta.db_table)) + ' (' + \\\n style.SQL_FIELD(backend.quote_name(f.rel.to._meta.get_field(f.rel.field_name).column)) + ')' + \n backend.get_deferrable_sql()\n )\n else:\n # We haven't yet created the table to which this field\n # is related, so save it for later.\n pr = pending_references.setdefault(f.rel.to, []).append((model, f))\n table_output.append(' '.join(field_output))\n if opts.order_with_respect_to:\n table_output.append(style.SQL_FIELD(backend.quote_name('_order')) + ' ' + \\\n style.SQL_COLTYPE(data_types['IntegerField']) + ' ' + \\\n style.SQL_KEYWORD('NULL'))\n for field_constraints in opts.unique_together:\n table_output.append(style.SQL_KEYWORD('UNIQUE') + ' (%s)' % \\\n \", \".join([backend.quote_name(style.SQL_FIELD(opts.get_field(f).column)) for f in field_constraints]))\n\n full_statement = [style.SQL_KEYWORD('CREATE TABLE') + ' ' + style.SQL_TABLE(backend.quote_name(opts.db_table)) + ' (']\n for i, line in enumerate(table_output): # Combine and add commas.\n full_statement.append(' %s%s' % (line, i < len(table_output)-1 and ',' or ''))\n full_statement.append(');')\n final_output.append('\\n'.join(full_statement))\n\n return final_output, pending_references", "metadata": "root._get_sql_model_create", "header": "['module', '___EOS___']", "index": 154 }, { "content": "def _get_sql_for_pending_references(model, pending_references):\n \"\"\"\n Get any ALTER TABLE statements to add constraints after the fact.\n \"\"\"\n from django.db import backend, get_creation_module\n data_types = get_creation_module().DATA_TYPES\n\n final_output = []\n if backend.supports_constraints:\n opts = model._meta\n if model in pending_references:\n for rel_class, f in pending_references[model]:\n rel_opts = rel_class._meta\n r_table = rel_opts.db_table\n r_col = f.column\n table = opts.db_table\n col = opts.get_field(f.rel.field_name).column\n # For MySQL, r_name must be unique in the first 64 characters.\n # So we are careful with character usage here.\n r_name = '%s_refs_%s_%x' % (r_col, col, abs(hash((r_table, table))))\n final_output.append(style.SQL_KEYWORD('ALTER TABLE') + ' %s ADD CONSTRAINT %s FOREIGN KEY (%s) REFERENCES %s (%s)%s;' % \\\n (backend.quote_name(r_table), r_name,\n backend.quote_name(r_col), backend.quote_name(table), backend.quote_name(col), \n backend.get_deferrable_sql()))\n del pending_references[model]\n return final_output", "metadata": "root._get_sql_for_pending_references", "header": "['module', '___EOS___']", "index": 212 }, { "content": "def get_sql_delete(app):\n \"Returns a list of the DROP TABLE SQL statements for the given app.\"\n from django.db import backend, connection, models, get_introspection_module\n introspection = get_introspection_module()\n\n # This should work even if a connection isn't available\n try:\n cursor = connection.cursor()\n except:\n cursor = None\n\n # Figure out which tables already exist\n if cursor:\n table_names = introspection.get_table_list(cursor)\n else:\n table_names = []\n\n output = []\n\n # Output DROP TABLE statements for standard application tables.\n to_delete = set()\n\n references_to_delete = {}\n app_models = models.get_models(app)\n for model in app_models:\n if cursor and model._meta.db_table in table_names:\n # The table exists, so it needs to be dropped\n opts = model._meta\n for f in opts.fields:\n if f.rel and f.rel.to not in to_delete:\n references_to_delete.setdefault(f.rel.to, []).append( (model, f) )\n\n to_delete.add(model)\n\n for model in app_models:\n if cursor and model._meta.db_table in table_names:\n # Drop the table now\n output.append('%s %s;' % (style.SQL_KEYWORD('DROP TABLE'),\n style.SQL_TABLE(backend.quote_name(model._meta.db_table))))\n if backend.supports_constraints and references_to_delete.has_key(model):\n for rel_class, f in references_to_delete[model]:\n table = rel_class._meta.db_table\n col = f.column\n r_table = model._meta.db_table\n r_col = model._meta.get_field(f.rel.field_name).column\n output.append('%s %s %s %s;' % \\\n (style.SQL_KEYWORD('ALTER TABLE'),\n style.SQL_TABLE(backend.quote_name(table)),\n style.SQL_KEYWORD(backend.get_drop_foreignkey_sql()),\n style.SQL_FIELD(backend.quote_name('%s_refs_%s_%x' % (col, r_col, abs(hash((table, r_table))))))))\n del references_to_delete[model]\n\n # Output DROP TABLE statements for many-to-many tables.\n for model in app_models:\n opts = model._meta\n for f in opts.many_to_many:\n if cursor and f.m2m_db_table() in table_names:\n output.append(\"%s %s;\" % (style.SQL_KEYWORD('DROP TABLE'),\n style.SQL_TABLE(backend.quote_name(f.m2m_db_table()))))\n\n app_label = app_models[0]._meta.app_label\n\n # Close database connection explicitly, in case this output is being piped\n # directly into a database client, to avoid locking issues.\n if cursor:\n cursor.close()\n connection.close()\n\n return output[::-1] # Reverse it, to deal with table dependencies.", "metadata": "root.get_sql_delete", "header": "['module', '___EOS___']", "index": 277 }, { "content": "def get_custom_sql(app):\n \"Returns a list of the custom table modifying SQL statements for the given app.\"\n from django.db.models import get_models\n output = []\n\n app_models = get_models(app)\n app_dir = os.path.normpath(os.path.join(os.path.dirname(app.__file__), 'sql'))\n\n for model in app_models:\n output.extend(get_custom_sql_for_model(model))\n\n return output", "metadata": "root.get_custom_sql", "header": "['module', '___EOS___']", "index": 390 }, { "content": "def syncdb(verbosity=1, interactive=True):\n \"Creates the database tables for all apps in INSTALLED_APPS whose tables haven't already been created.\"\n from django.db import connection, transaction, models, get_creation_module\n from django.conf import settings\n\n disable_termcolors()\n\n # First, try validating the models.\n _check_for_validation_errors()\n\n # Import the 'management' module within each installed app, to register\n # dispatcher events.\n for app_name in settings.INSTALLED_APPS:\n try:\n __import__(app_name + '.management', {}, {}, [''])\n except ImportError:\n pass\n\n data_types = get_creation_module().DATA_TYPES\n\n cursor = connection.cursor()\n\n # Get a list of all existing database tables,\n # so we know what needs to be added.\n table_list = _get_table_list()\n\n # Get a list of already installed *models* so that references work right.\n seen_models = _get_installed_models(table_list)\n created_models = set()\n pending_references = {}\n\n # Create the tables for each model\n for app in models.get_apps():\n app_name = app.__name__.split('.')[-2]\n model_list = models.get_models(app)\n for model in model_list:\n # Create the model's database table, if it doesn't already exist.\n if verbosity >= 2:\n print \"Processing %s.%s model\" % (app_name, model._meta.object_name)\n if model._meta.db_table in table_list:\n continue\n sql, references = _get_sql_model_create(model, seen_models)\n seen_models.add(model)\n created_models.add(model)\n for refto, refs in references.items():\n pending_references.setdefault(refto, []).extend(refs)\n sql.extend(_get_sql_for_pending_references(model, pending_references))\n if verbosity >= 1:\n print \"Creating table %s\" % model._meta.db_table\n for statement in sql:\n cursor.execute(statement)\n table_list.append(model._meta.db_table)\n\n # Create the m2m tables. This must be done after all tables have been created\n # to ensure that all referred tables will exist.\n for app in models.get_apps():\n app_name = app.__name__.split('.')[-2]\n model_list = models.get_models(app)\n for model in model_list:\n if model in created_models:\n sql = _get_many_to_many_sql_for_model(model)\n if sql:\n if verbosity >= 2:\n print \"Creating many-to-many tables for %s.%s model\" % (app_name, model._meta.object_name)\n for statement in sql:\n cursor.execute(statement)\n\n transaction.commit_unless_managed()\n\n # Send the post_syncdb signal, so individual apps can do whatever they need\n # to do at this point.\n _emit_post_sync_signal(created_models, verbosity, interactive)\n\n # Install custom SQL for the app (but only if this \n # is a model we've just created)\n for app in models.get_apps():\n for model in models.get_models(app):\n if model in created_models:\n custom_sql = get_custom_sql_for_model(model)\n if custom_sql:\n if verbosity >= 1:\n print \"Installing custom SQL for %s.%s model\" % (app_name, model._meta.object_name)\n try:\n for sql in custom_sql:\n cursor.execute(sql)\n except Exception, e:\n sys.stderr.write(\"Failed to install custom SQL for %s.%s model: %s\" % \\\n (app_name, model._meta.object_name, e))\n transaction.rollback_unless_managed()\n else:\n transaction.commit_unless_managed()\n\n # Install SQL indicies for all newly created models\n for app in models.get_apps():\n app_name = app.__name__.split('.')[-2]\n for model in models.get_models(app):\n if model in created_models:\n index_sql = get_sql_indexes_for_model(model)\n if index_sql:\n if verbosity >= 1:\n print \"Installing index for %s.%s model\" % (app_name, model._meta.object_name)\n try:\n for sql in index_sql:\n cursor.execute(sql)\n except Exception, e:\n sys.stderr.write(\"Failed to install index for %s.%s model: %s\" % \\\n (app_name, model._meta.object_name, e))\n transaction.rollback_unless_managed()\n else:\n transaction.commit_unless_managed()\n\n # Install the 'initialdata' fixture, using format discovery\n load_data(['initial_data'], verbosity=verbosity)", "metadata": "root.syncdb", "header": "['module', '___EOS___']", "index": 483 }, { "content": "def run_shell(use_plain=False):\n \"Runs a Python interactive interpreter. Tries to use IPython, if it's available.\"\n # XXX: (Temporary) workaround for ticket #1796: force early loading of all\n # models from installed apps.\n from django.db.models.loading import get_models\n loaded_models = get_models()\n\n try:\n if use_plain:\n # Don't bother loading IPython, because the user wants plain Python.\n raise ImportError\n import IPython\n # Explicitly pass an empty list as arguments, because otherwise IPython\n # would use sys.argv from this script.\n shell = IPython.Shell.IPShell(argv=[])\n shell.mainloop()\n except ImportError:\n import code\n try: # Try activating rlcompleter, because it's handy.\n import readline\n except ImportError:\n pass\n else:\n # We don't have to wrap the following import in a 'try', because\n # we already know 'readline' was imported successfully.\n import rlcompleter\n readline.parse_and_bind(\"tab:complete\")\n code.interact()", "metadata": "root.run_shell", "header": "['module', '___EOS___']", "index": 1254 }, { "content": "def load_data(fixture_labels, verbosity=1):\n \"Installs the provided fixture file(s) as data in the database.\"\n from django.db.models import get_apps\n from django.core import serializers\n from django.db import connection, transaction\n from django.conf import settings\n import sys\n \n # Keep a count of the installed objects and fixtures\n count = [0,0]\n \n humanize = lambda dirname: dirname and \"'%s'\" % dirname or 'absolute path'\n\n # Get a cursor (even though we don't need one yet). This has\n # the side effect of initializing the test database (if \n # it isn't already initialized).\n cursor = connection.cursor()\n \n # Start transaction management. All fixtures are installed in a \n # single transaction to ensure that all references are resolved.\n transaction.commit_unless_managed()\n transaction.enter_transaction_management()\n transaction.managed(True)\n \n app_fixtures = [os.path.join(os.path.dirname(app.__file__),'fixtures') for app in get_apps()]\n for fixture_label in fixture_labels:\n if verbosity > 0:\n print \"Loading '%s' fixtures...\" % fixture_label\n for fixture_dir in app_fixtures + list(settings.FIXTURE_DIRS) + ['']:\n if verbosity > 1:\n print \"Checking %s for fixtures...\" % humanize(fixture_dir)\n parts = fixture_label.split('.')\n if len(parts) == 1:\n fixture_name = fixture_label\n formats = serializers.get_serializer_formats()\n else:\n fixture_name, format = '.'.join(parts[:-1]), parts[-1]\n formats = [format]\n\n label_found = False\n for format in formats:\n serializer = serializers.get_serializer(format)\n if verbosity > 1:\n print \"Trying %s for %s fixture '%s'...\" % \\\n (humanize(fixture_dir), format, fixture_name)\n try:\n full_path = os.path.join(fixture_dir, '.'.join([fixture_name, format]))\n fixture = open(full_path, 'r')\n if label_found:\n fixture.close()\n print style.ERROR(\"Multiple fixtures named '%s' in %s. Aborting.\" % \n (fixture_name, humanize(fixture_dir)))\n transaction.rollback()\n transaction.leave_transaction_management()\n return\n else:\n count[1] += 1\n if verbosity > 0:\n print \"Installing %s fixture '%s' from %s.\" % \\\n (format, fixture_name, humanize(fixture_dir))\n try:\n objects = serializers.deserialize(format, fixture)\n for obj in objects:\n count[0] += 1\n obj.save()\n label_found = True\n except Exception, e:\n fixture.close()\n sys.stderr.write(\n style.ERROR(\"Problem installing fixture '%s': %s\\n\" % \n (full_path, str(e))))\n transaction.rollback()\n transaction.leave_transaction_management()\n return\n fixture.close()\n except:\n if verbosity > 1:\n print \"No %s fixture '%s' in %s.\" % \\\n (format, fixture_name, humanize(fixture_dir))\n if count[0] == 0:\n if verbosity > 0:\n print \"No fixtures found.\"\n else:\n if verbosity > 0:\n print \"Installed %d object(s) from %d fixture(s)\" % tuple(count)\n transaction.commit()\n transaction.leave_transaction_management()", "metadata": "root.load_data", "header": "['module', '___EOS___']", "index": 1329 }, { "content": "def setup_environ(settings_mod):\n \"\"\"\n Configure the runtime environment. This can also be used by external\n scripts wanting to set up a similar environment to manage.py.\n \"\"\"\n # Add this project to sys.path so that it's importable in the conventional\n # way. For example, if this file (manage.py) lives in a directory\n # \"myproject\", this code would add \"/path/to/myproject\" to sys.path.\n project_directory = os.path.dirname(settings_mod.__file__)\n project_name = os.path.basename(project_directory)\n sys.path.append(os.path.join(project_directory, '..'))\n project_module = __import__(project_name, {}, {}, [''])\n sys.path.pop()\n\n # Set DJANGO_SETTINGS_MODULE appropriately.\n os.environ['DJANGO_SETTINGS_MODULE'] = '%s.settings' % project_name\n return project_directory", "metadata": "root.setup_environ", "header": "['module', '___EOS___']", "index": 1635 } ]

[ { "span": "pr ", "start_line": 194, "start_column": 20, "end_line": 194, "end_column": 22 }, { "span": "data_types ", "start_line": 217, "start_column": 4, "end_line": 217, "end_column": 14 }, { "span": "app_label ", "start_line": 337, "start_column": 4, "end_line": 337, "end_column": 13 }, { "span": "app_dir ", "start_line": 396, "start_column": 4, "end_line": 396, "end_column": 11 }, { "span": "data_types ", "start_line": 501, "start_column": 4, "end_line": 501, "end_column": 14 }, { "span": "loaded_models ", "start_line": 1259, "start_column": 4, "end_line": 1259, "end_column": 17 }, { "span": "cursor ", "start_line": 1345, "start_column": 4, "end_line": 1345, "end_column": 10 }, { "span": "project_module ", "start_line": 1646, "start_column": 4, "end_line": 1646, "end_column": 18 } ]

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[ { "content": " def testOVAUnpackingDirectories(self):\n self.importer = ovf.OVFImporter(self.ova_package, OPTS_EMPTY)\n self.assertTrue(self.importer.input_dir != None)\n self.assertEquals(self.importer.output_dir , pathutils.EXPORT_DIR)\n self.assertTrue(self.importer.temp_dir != None)", "metadata": "root.TestOVFImporter.testOVAUnpackingDirectories", "header": "['class', 'TestOVFImporter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 410 }, { "content": " def testOVFSetOutputDirDirectories(self):\n self.importer = ovf.OVFImporter(self.ganeti_ovf, OPTS_EXPORT)\n self.assertEquals(self.importer.input_dir , _GetFullFilename(\"\"))\n self.assertTrue(OUTPUT_DIR in self.importer.output_dir)\n self.assertEquals(self.importer.temp_dir , None)", "metadata": "root.TestOVFImporter.testOVFSetOutputDirDirectories", "header": "['class', 'TestOVFImporter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 423 }, { "content": " def testParseGanetiOvf(self):\n self.importer = ovf.OVFImporter(self.ganeti_ovf, OPTS_EXPORT_NO_NAME)\n self.importer.Parse()\n self.assertTrue(\"%s/ganeti-test-xen\" % OUTPUT_DIR in\n self.importer.output_dir)\n self.assertEqual(self.importer.results_disk, GANETI_DISKS)\n self.assertEqual(self.importer.results_network, GANETI_NETWORKS)\n self.assertEqual(self.importer.results_hypervisor, GANETI_HYPERVISOR)\n self.assertEqual(self.importer.results_os, GANETI_OS)\n self.assertEqual(self.importer.results_backend, GANETI_BACKEND)\n self.assertEqual(self.importer.results_name, GANETI_NAME)\n self.assertEqual(self.importer.results_template, GANETI_TEMPLATE)\n self.assertEqual(self.importer.results_tags, GANETI_TAGS)\n self.assertEqual(self.importer.results_version, GANETI_VERSION)", "metadata": "root.TestOVFImporter.testParseGanetiOvf", "header": "['class', 'TestOVFImporter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 437 }, { "content": " def testParseVirtualboxOvf(self):\n self.importer = ovf.OVFImporter(self.virtualbox_ovf, OPTS_VBOX)\n self.importer.Parse()\n self.assertTrue(\"%s/test-instance\" % OUTPUT_DIR in self.importer.output_dir)\n self.assertEquals(self.importer.results_disk, VIRTUALBOX_DISKS)\n self.assertEquals(self.importer.results_network, VIRTUALBOX_NETWORKS)\n self.assertEquals(self.importer.results_hypervisor, CMDARGS_HYPERVISOR)\n self.assertEquals(self.importer.results_os, CMDARGS_OS)\n self.assertEquals(self.importer.results_backend, VIRTUALBOX_BACKEND)\n self.assertEquals(self.importer.results_name, CMDARGS_NAME)\n self.assertEquals(self.importer.results_template, VIRTUALBOX_TEMPLATE)\n self.assertEqual(self.importer.results_tags, VIRTUALBOX_TAGS)\n self.assertEqual(self.importer.results_version, constants.EXPORT_VERSION)", "metadata": "root.TestOVFImporter.testParseVirtualboxOvf", "header": "['class', 'TestOVFImporter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 452 }, { "content": " def testParseEmptyOvf(self):\n self.importer = ovf.OVFImporter(self.empty_ovf, OPTS_COMPLETE)\n self.importer.Parse()\n self.assertTrue(\"%s/test-instance\" % OUTPUT_DIR in self.importer.output_dir)\n self.assertEquals(self.importer.results_disk, CMDARGS_DISKS)\n self.assertEquals(self.importer.results_network, CMDARGS_NETWORKS)\n self.assertEquals(self.importer.results_hypervisor, CMDARGS_HYPERVISOR)\n self.assertEquals(self.importer.results_os, CMDARGS_OS)\n self.assertEquals(self.importer.results_backend, CMDARGS_BACKEND)\n self.assertEquals(self.importer.results_name, CMDARGS_NAME)\n self.assertEquals(self.importer.results_template, CMDARGS_TEMPLATE)\n self.assertEqual(self.importer.results_tags, CMDARGS_TAGS)\n self.assertEqual(self.importer.results_version, constants.EXPORT_VERSION)", "metadata": "root.TestOVFImporter.testParseEmptyOvf", "header": "['class', 'TestOVFImporter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 466 }, { "content": " def testOVFWriterInit(self):\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_EMPTY in result)", "metadata": "root.TestOVFWriter.testOVFWriterInit", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 791 }, { "content": " def testSaveDisksDataEmpty(self):\n self.writer.SaveDisksData([])\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_DISKS_EMPTY in result)", "metadata": "root.TestOVFWriter.testSaveDisksDataEmpty", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 795 }, { "content": " def testSaveDisksData(self):\n self.writer.SaveDisksData(EXP_DISKS_LIST)\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_DISKS in result)", "metadata": "root.TestOVFWriter.testSaveDisksData", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 800 }, { "content": " def testSaveNetworkDataEmpty(self):\n self.writer.SaveNetworksData([])\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_NETWORKS_EMPTY in result)", "metadata": "root.TestOVFWriter.testSaveNetworkDataEmpty", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 805 }, { "content": " def testSaveNetworksData(self):\n self.writer.SaveNetworksData(EXP_NETWORKS_LIST)\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_NETWORKS in result)", "metadata": "root.TestOVFWriter.testSaveNetworksData", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 810 }, { "content": " def testSaveGanetiDataIncomplete(self):\n self.writer.SaveGanetiData(EXP_PARTIAL_GANETI_DICT, EXP_NETWORKS_LIST)\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_GANETI_INCOMPLETE in result)", "metadata": "root.TestOVFWriter.testSaveGanetiDataIncomplete", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 815 }, { "content": " def testSaveGanetiDataComplete(self):\n self.writer.SaveGanetiData(EXP_GANETI_DICT, EXP_NETWORKS_LIST)\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_GANETI in result)", "metadata": "root.TestOVFWriter.testSaveGanetiDataComplete", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 820 }, { "content": " def testSaveVirtualSystem(self):\n self.writer.SaveDisksData(EXP_DISKS_LIST)\n self.writer.SaveNetworksData(EXP_NETWORKS_LIST)\n self.writer.SaveVirtualSystemData(EXP_NAME, EXP_VCPUS, EXP_MEMORY)\n result = ET.tostring(self.writer.tree)\n self.assertTrue(EXPORT_SYSTEM in result)", "metadata": "root.TestOVFWriter.testSaveVirtualSystem", "header": "['class', 'TestOVFWriter', '(', 'BetterUnitTest', ')', ':', '___EOS___']", "index": 825 } ]

[ { "span": "self.assertTrue(self.importer.input_dir != None)", "start_line": 412, "start_column": 4, "end_line": 412, "end_column": 52 }, { "span": "self.assertTrue(self.importer.temp_dir != None)", "start_line": 414, "start_column": 4, "end_line": 414, "end_column": 51 }, { "span": "self.assertTrue(OUTPUT_DIR in self.importer.output_dir)", "start_line": 426, "start_column": 4, "end_line": 426, "end_column": 59 }, { "span": "self.assertTrue(\"%s/ganeti-test-xen\" % OUTPUT_DIR in\n self.importer.output_dir)", "start_line": 440, "start_column": 4, "end_line": 441, "end_column": 31 }, { "span": "self.assertTrue(\"%s/test-instance\" % OUTPUT_DIR in self.importer.output_dir)", "start_line": 455, "start_column": 4, "end_line": 455, "end_column": 80 }, { "span": "self.assertTrue(\"%s/test-instance\" % OUTPUT_DIR in self.importer.output_dir)", "start_line": 469, "start_column": 4, "end_line": 469, "end_column": 80 }, { "span": "self.assertTrue(EXPORT_EMPTY in result)", "start_line": 793, "start_column": 4, "end_line": 793, "end_column": 43 }, { "span": "self.assertTrue(EXPORT_DISKS_EMPTY in result)", "start_line": 798, "start_column": 4, "end_line": 798, "end_column": 49 }, { "span": "self.assertTrue(EXPORT_DISKS in result)", "start_line": 803, "start_column": 4, "end_line": 803, "end_column": 43 }, { "span": "self.assertTrue(EXPORT_NETWORKS_EMPTY in result)", "start_line": 808, "start_column": 4, "end_line": 808, "end_column": 52 }, { "span": "self.assertTrue(EXPORT_NETWORKS in result)", "start_line": 813, "start_column": 4, "end_line": 813, "end_column": 46 }, { "span": "self.assertTrue(EXPORT_GANETI_INCOMPLETE in result)", "start_line": 818, "start_column": 4, "end_line": 818, "end_column": 55 }, { "span": "self.assertTrue(EXPORT_GANETI in result)", "start_line": 823, "start_column": 4, "end_line": 823, "end_column": 44 }, { "span": "self.assertTrue(EXPORT_SYSTEM in result)", "start_line": 830, "start_column": 4, "end_line": 830, "end_column": 44 } ]

[]

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[ { "content": "\"\"\"\nurllib3 - Thread-safe connection pooling and re-using.\n\"\"\"\n\nfrom __future__ import absolute_import\nimport warnings\n\nfrom .connectionpool import (\n HTTPConnectionPool,\n HTTPSConnectionPool,\n connection_from_url\n)\n\nfrom . import exceptions\nfrom .filepost import encode_multipart_formdata\nfrom .poolmanager import PoolManager, ProxyManager, proxy_from_url\nfrom .response import HTTPResponse\nfrom .util.request import make_headers\nfrom .util.url import get_host\nfrom .util.timeout import Timeout\nfrom .util.retry import Retry\n\n\n# Set default logging handler to avoid \"No handler found\" warnings.\nimport logging\ntry: # Python 2.7+\n from logging import NullHandler\nexcept ImportError:\n\n__author__ = 'Andrey Petrov (andrey.petrov@shazow.net)'\n__license__ = 'MIT'\n__version__ = '1.15.1'\n\n__all__ = (\n 'HTTPConnectionPool',\n 'HTTPSConnectionPool',\n 'PoolManager',\n 'ProxyManager',\n 'HTTPResponse',\n 'Retry',\n 'Timeout',\n 'add_stderr_logger',\n 'connection_from_url',\n 'disable_warnings',\n 'encode_multipart_formdata',\n 'get_host',\n 'make_headers',\n 'proxy_from_url',\n)\n\nlogging.getLogger(__name__).addHandler(NullHandler())\n\n\n\n# ... Clean up.\ndel NullHandler\n\n\n# All warning filters *must* be appended unless you're really certain that they\n# shouldn't be: otherwise, it's very hard for users to use most Python\n# mechanisms to silence them.\n# SecurityWarning's always go off by default.\nwarnings.simplefilter('always', exceptions.SecurityWarning, append=True)\n# SubjectAltNameWarning's should go off once per host\nwarnings.simplefilter('default', exceptions.SubjectAltNameWarning, append=True)\n# InsecurePlatformWarning's don't vary between requests, so we keep it default.\nwarnings.simplefilter('default', exceptions.InsecurePlatformWarning,\n append=True)\n# SNIMissingWarnings should go off only once.\nwarnings.simplefilter('default', exceptions.SNIMissingWarning, append=True)\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "import logging", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 14 } ]

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[ { "content": " def add_prefix(self, argp):\n t0 = time.time()\n prefix = self.n.add_prefix({ 'name': 'test-schema' }, { 'prefix': argp, 'description': 'test' })\n t1 = time.time()\n d1 = t1-t0\n print \"Add prefix:\", argp, \"took\", d1, \"seconds\"", "metadata": "root.bonk.add_prefix", "header": "['class', 'bonk', ':', '___EOS___']", "index": 127 }, { "content": " def remove_prefix(self, argp):\n t0 = time.time()\n prefix = self.n.remove_prefix({ 'name': 'test-schema' }, { 'prefix': argp })\n t1 = time.time()\n d1 = t1-t0\n print \"Delete prefix:\", argp, \"took\", d1, \"seconds\"", "metadata": "root.bonk.remove_prefix", "header": "['class', 'bonk', ':', '___EOS___']", "index": 136 }, { "content": " def test1(self):\n t0 = time.time()\n res = self.n.find_free_prefix({ 'schema_name': 'test-schema', 'from-prefix': ['1.0.0.0/8'] }, 32, 1)\n t1 = time.time()\n res = self.n.find_free_prefix({ 'schema_name': 'test-schema', 'from-prefix': ['1.0.0.0/8'] }, 32, 500)\n t2 = time.time()\n for prefix in res:\n self.n.add_prefix({ 'schema_name': 'test-schema', 'prefix': prefix, 'description': 'test' })\n t3 = time.time()\n res = self.n.find_free_prefix({ 'schema_name': 'test-schema', 'from-prefix': ['1.0.0.0/8'] }, 32, 1)\n t4 = time.time()\n d1 = t1-t0\n d2 = t2-t1\n d3 = t3-t2\n d4 = t4-t3\n d5 = d4-d1\n print \"First find free prefix:\", d1\n print \"First find of 500 prefixes:\", d2\n print \"Adding 500 prefixes\", d3\n print \"Find one prefix after\", d4\n print \"Diff\", d5", "metadata": "root.bonk.test1", "header": "['class', 'bonk', ':', '___EOS___']", "index": 150 }, { "content": " def test2(self):\n t0 = time.time()\n res = self.n.find_free_prefix({ 'schema_name': 'test-schema', 'from-prefix': ['2.0.0.0/8'] }, 32, 1)\n t1 = time.time()\n d1 = t1-t0\n print \"Find free prefix:\", d1", "metadata": "root.bonk.test2", "header": "['class', 'bonk', ':', '___EOS___']", "index": 172 } ]

[ { "span": "prefix ", "start_line": 129, "start_column": 8, "end_line": 129, "end_column": 14 }, { "span": "prefix ", "start_line": 138, "start_column": 8, "end_line": 138, "end_column": 14 }, { "span": "res ", "start_line": 159, "start_column": 8, "end_line": 159, "end_column": 11 }, { "span": "res ", "start_line": 174, "start_column": 8, "end_line": 174, "end_column": 11 } ]

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[ { "content": " def _printPrefix(self, want):\n \"\"\"Prints Prefixlen/Netmask.\n\n Not really. In fact it is our universal Netmask/Prefixlen printer.\n This is considered an internal function.\n\n want == 0 / None don't return anything 1.2.3.0\n want == 1 /prefix 1.2.3.0/24\n want == 2 /netmask 1.2.3.0/255.255.255.0\n want == 3 -lastip 1.2.3.0-1.2.3.255\n \"\"\"\n\n if (self._ipversion == 4 and self._prefixlen == 32) or \\\n (self._ipversion == 6 and self._prefixlen == 128):\n if self.NoPrefixForSingleIp:\n want = 0\n if want == None:\n want = self.WantPrefixLen\n if want == None:\n want = 1\n if want:\n if want == 2:\n # this should work with IP and IPint\n netmask = self.netmask()\n if not isinstance(netmask, (int, long)):\n netmask = netmask.int()\n return \"/%s\" % (intToIp(netmask, self._ipversion))\n elif want == 3:\n return \"-%s\" % (intToIp(self.ip + self.len() - 1, self._ipversion))\n else:\n # default\n return \"/%d\" % (self._prefixlen)\n else:\n return ''\n\n # We have different flavours to convert to:\n # strFullsize 127.0.0.1 2001:0658:022a:cafe:0200:c0ff:fe8d:08fa\n # strNormal 127.0.0.1 2001:658:22a:cafe:200:c0ff:fe8d:08fa\n # strCompressed 127.0.0.1 2001:658:22a:cafe::1\n # strHex 0x7F000001 0x20010658022ACAFE0200C0FFFE8D08FA\n # strDec 2130706433 42540616829182469433547974687817795834", "metadata": "root.IPint._printPrefix", "header": "['class', 'IPint', ':', '___EOS___']", "index": 296 }, { "content": " def strBin(self, wantprefixlen = None):\n \"\"\"Return a string representation as a binary value.\n\n >>> print(IP('127.0.0.1').strBin())\n 01111111000000000000000000000001\n \"\"\"\n\n\n if self._ipversion == 4:\n bits = 32\n elif self._ipversion == 6:\n bits = 128\n else:\n raise ValueError(\"only IPv4 and IPv6 supported\")\n\n if self.WantPrefixLen == None and wantprefixlen == None:\n wantprefixlen = 0\n ret = _intToBin(self.ip)\n return '0' * (bits - len(ret)) + ret + self._printPrefix(wantprefixlen)", "metadata": "root.IPint.strBin", "header": "['class', 'IPint', ':', '___EOS___']", "index": 338 }, { "content": " def strCompressed(self, wantprefixlen = None):\n \"\"\"Return a string representation in compressed format using '::' Notation.\n\n >>> IP('127.0.0.1').strCompressed()\n '127.0.0.1'\n >>> IP('2001:0658:022a:cafe:0200::1').strCompressed()\n '2001:658:22a:cafe:200::1'\n >>> IP('ffff:ffff:ffff:ffff:ffff:f:f:fffc/127').strCompressed()\n 'ffff:ffff:ffff:ffff:ffff:f:f:fffc/127'\n \"\"\"\n\n if self.WantPrefixLen == None and wantprefixlen == None:\n wantprefixlen = 1\n\n if self._ipversion == 4:\n return self.strFullsize(wantprefixlen)\n else:\n if self.ip >> 32 == 0xffff:\n ipv4 = intToIp(self.ip & 0xffffffff, 4)\n text = \"::ffff:\" + ipv4 + self._printPrefix(wantprefixlen)\n return text\n # find the longest sequence of '0'\n hextets = [int(x, 16) for x in self.strFullsize(0).split(':')]\n # every element of followingzeros will contain the number of zeros\n # following the corresponding element of hextets\n followingzeros = [0] * 8\n for i in xrange(len(hextets)):\n followingzeros[i] = _countFollowingZeros(hextets[i:])\n # compressionpos is the position where we can start removing zeros\n compressionpos = followingzeros.index(max(followingzeros))\n if max(followingzeros) > 1:\n # genererate string with the longest number of zeros cut out\n # now we need hextets as strings\n hextets = [x for x in self.strNormal(0).split(':')]\n while compressionpos < len(hextets) and hextets[compressionpos] == '0':\n del(hextets[compressionpos])\n hextets.insert(compressionpos, '')\n if compressionpos + 1 >= len(hextets):\n hextets.append('')\n if compressionpos == 0:\n hextets = [''] + hextets\n return ':'.join(hextets) + self._printPrefix(wantprefixlen)\n else:\n return self.strNormal(0) + self._printPrefix(wantprefixlen)", "metadata": "root.IPint.strCompressed", "header": "['class', 'IPint', ':', '___EOS___']", "index": 358 }, { "content": " def strNormal(self, wantprefixlen = None):\n \"\"\"Return a string representation in the usual format.\n\n >>> print(IP('127.0.0.1').strNormal())\n 127.0.0.1\n >>> print(IP('2001:0658:022a:cafe:0200::1').strNormal())\n 2001:658:22a:cafe:200:0:0:1\n \"\"\"\n\n if self.WantPrefixLen == None and wantprefixlen == None:\n wantprefixlen = 1\n\n if self._ipversion == 4:\n ret = self.strFullsize(0)\n elif self._ipversion == 6:\n ret = ':'.join([hex(x)[2:] for x in [int(x, 16) for x in self.strFullsize(0).split(':')]])\n else:\n raise ValueError(\"only IPv4 and IPv6 supported\")\n\n\n\n return ret + self._printPrefix(wantprefixlen)", "metadata": "root.IPint.strNormal", "header": "['class', 'IPint', ':', '___EOS___']", "index": 403 }, { "content": " def strFullsize(self, wantprefixlen = None):\n \"\"\"Return a string representation in the non-mangled format.\n\n >>> print(IP('127.0.0.1').strFullsize())\n 127.0.0.1\n >>> print(IP('2001:0658:022a:cafe:0200::1').strFullsize())\n 2001:0658:022a:cafe:0200:0000:0000:0001\n \"\"\"\n\n if self.WantPrefixLen == None and wantprefixlen == None:\n wantprefixlen = 1\n\n return intToIp(self.ip, self._ipversion).lower() + self._printPrefix(wantprefixlen)", "metadata": "root.IPint.strFullsize", "header": "['class', 'IPint', ':', '___EOS___']", "index": 426 }, { "content": " def strHex(self, wantprefixlen = None):\n \"\"\"Return a string representation in hex format in lower case.\n\n >>> IP('127.0.0.1').strHex()\n '0x7f000001'\n >>> IP('2001:0658:022a:cafe:0200::1').strHex()\n '0x20010658022acafe0200000000000001'\n \"\"\"\n\n if self.WantPrefixLen == None and wantprefixlen == None:\n wantprefixlen = 0\n\n x = hex(self.ip)\n if x[-1] == 'L':\n x = x[:-1]\n return x.lower() + self._printPrefix(wantprefixlen)", "metadata": "root.IPint.strHex", "header": "['class', 'IPint', ':', '___EOS___']", "index": 440 }, { "content": " def strDec(self, wantprefixlen = None):\n \"\"\"Return a string representation in decimal format.\n\n >>> print(IP('127.0.0.1').strDec())\n 2130706433\n >>> print(IP('2001:0658:022a:cafe:0200::1').strDec())\n 42540616829182469433547762482097946625\n \"\"\"\n\n if self.WantPrefixLen == None and wantprefixlen == None:\n wantprefixlen = 0\n\n x = str(self.ip)\n if x[-1] == 'L':\n x = x[:-1]\n return x + self._printPrefix(wantprefixlen)", "metadata": "root.IPint.strDec", "header": "['class', 'IPint', ':', '___EOS___']", "index": 457 } ]

[ { "span": "want == None:", "start_line": 312, "start_column": 11, "end_line": 312, "end_column": 23 }, { "span": "want == None:", "start_line": 314, "start_column": 15, "end_line": 314, "end_column": 27 }, { "span": "self.WantPrefixLen == None ", "start_line": 353, "start_column": 11, "end_line": 353, "end_column": 37 }, { "span": "wantprefixlen == None:", "start_line": 353, "start_column": 42, "end_line": 353, "end_column": 63 }, { "span": "self.WantPrefixLen == None ", "start_line": 369, "start_column": 11, "end_line": 369, "end_column": 37 }, { "span": "wantprefixlen == None:", "start_line": 369, "start_column": 42, "end_line": 369, "end_column": 63 }, { "span": "self.WantPrefixLen == None ", "start_line": 412, "start_column": 11, "end_line": 412, "end_column": 37 }, { "span": "wantprefixlen == None:", "start_line": 412, "start_column": 42, "end_line": 412, "end_column": 63 }, { "span": "self.WantPrefixLen == None ", "start_line": 435, "start_column": 11, "end_line": 435, "end_column": 37 }, { "span": "wantprefixlen == None:", "start_line": 435, "start_column": 42, "end_line": 435, "end_column": 63 }, { "span": "self.WantPrefixLen == None ", "start_line": 449, "start_column": 11, "end_line": 449, "end_column": 37 }, { "span": "wantprefixlen == None:", "start_line": 449, "start_column": 42, "end_line": 449, "end_column": 63 }, { "span": "self.WantPrefixLen == None ", "start_line": 466, "start_column": 11, "end_line": 466, "end_column": 37 }, { "span": "wantprefixlen == None:", "start_line": 466, "start_column": 42, "end_line": 466, "end_column": 63 } ]

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[ { "content": " def test_first_derivative(self):\n\n top = set_as_top(Assembly())\n top.add('comp', Paraboloid())\n top.add('driver', SimpleDriver())\n top.driver.workflow.add(['comp'])\n top.driver.add_parameter('comp.x', low=-1000, high=1000)\n top.driver.add_parameter('comp.y', low=-1000, high=1000)\n top.driver.add_objective('comp.f_xy')\n\n top.comp.x = 3\n top.comp.y = 5\n top.run()\n\n J = top.driver.calc_gradient(outputs=['comp.f_xy'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 5.0, 0.0001)\n assert_rel_error(self, J[0, 1], 21.0, 0.0001)\n\n expected = \"\"\"\\\n------------------------\nCalculated Gradient\n------------------------\n\\[\\[ 5. 21.\\]\\]\n------------------------\nFinite Difference Comparison\n------------------------\n\\[\\[ 5.[0-9]+[ ]+21.[0-9]+\\]\\]\n\n Calculated FiniteDiff RelError[^\\n]+\n----------------------------------------------------------------------------\ncomp.f_xy / comp.x: 5.0 5.[0-9]+[ ]+[^\\n]+\ncomp.f_xy / comp.y: 21.0 21.[0-9]+[ ]+[^\\n]+\n\nAverage RelError: [^\\n]+\nMax RelError: [^ ]+ for comp.f_xy / comp.x\n\n\"\"\"\n stream = StringIO()\n top.driver.check_gradient(outputs=('comp.f_xy',), stream=stream)\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n stream = StringIO()\n top.check_gradient(outputs=['comp.f_xy'], stream=stream,\n inputs=['comp.x', 'comp.y'])\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n stream = StringIO()\n top.check_gradient(inputs=('comp.x', 'comp.y'), outputs=('comp.f_xy',),\n stream=stream)\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n stream = StringIO()\n top.check_gradient(name='driver', outputs=['comp.f_xy'], stream=stream,\n inputs=['comp.x', 'comp.y'])\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n stream = StringIO()\n top.check_gradient(name='comp', stream=stream)\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n stream = StringIO()\n top.comp.check_gradient(stream=stream)\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n stream = StringIO()\n comp = Paraboloid()\n comp.x = 3\n comp.y = 5\n Jbase, J, io_pairs, suspects = comp.check_gradient(stream=stream)\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")\n\n # now do it again to make sure name and parent were properly reset\n Jbase, J, io_pairs, suspects = comp.check_gradient(stream=stream)\n actual = stream.getvalue()\n if re.match(expected, actual) is None:\n print 'Expected:\\n%s' % expected\n print 'Actual:\\n%s' % actual\n self.fail(\"check_gradient() output doesn't match expected\")", "metadata": "root.Testcase_derivatives.test_first_derivative", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 972 }, { "content": " def test_nested(self):\n\n top = set_as_top(Assembly())\n top.add('nest', Assembly())\n top.nest.add('comp', Paraboloid())\n\n # We shouldn't calculate a derivative of this\n top.nest.comp.add('unwanted', Float(12.34, iotype='in'))\n top.nest.comp.add('junk', Float(9.9, iotype='out'))\n\n top.driver.workflow.add(['nest'])\n top.nest.driver.workflow.add(['comp'])\n top.nest.create_passthrough('comp.x')\n top.nest.create_passthrough('comp.y')\n top.nest.create_passthrough('comp.unwanted')\n top.nest.create_passthrough('comp.f_xy')\n top.nest.x = 3\n top.nest.y = 5\n top.run()\n\n # Now we need to set a deriv policy to prevent squawking\n # about missing deriatives.\n top.nest.comp.missing_deriv_policy = 'assume_zero'\n\n J = top.driver.calc_gradient(inputs=['nest.x', 'nest.y'],\n outputs=['nest.f_xy'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 5.0, 0.0001)\n assert_rel_error(self, J[0, 1], 21.0, 0.0001)\n\n J = top.driver.calc_gradient(inputs=['nest.x', 'nest.y'],\n outputs=['nest.f_xy'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 5.0, 0.0001)\n assert_rel_error(self, J[0, 1], 21.0, 0.0001)\n\n # Now, let's find the derivative of the unconnected. Behaviour depends\n # on deriv policy.\n top.nest.add('stuff', Float(1.0, iotype='in'))\n top.nest.add('junk', Float(1.0, iotype='out'))\n top.add('first', Paraboloid())\n top.add('last', Paraboloid())\n top.connect('first.f_xy', 'nest.stuff')\n top.connect('nest.junk', 'last.x')\n top.driver.workflow.clear()\n top.driver.workflow.add(['first', 'nest', 'last'])\n\n top.nest.comp.missing_deriv_policy = 'assume_zero'\n top.run()\n J = top.driver.calc_gradient(inputs=['nest.x', 'first.x'],\n outputs=['nest.f_xy', 'last.f_xy'],\n mode='forward')\n\n top.nest.missing_deriv_policy = 'assume_zero'\n J = top.driver.calc_gradient(inputs=['nest.x', 'first.x'],\n outputs=['nest.f_xy', 'last.f_xy'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 5.0, .001)\n assert_rel_error(self, J[0, 1], 0.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)\n assert_rel_error(self, J[1, 1], 0.0, .001)\n\n top.nest.missing_deriv_policy = 'error'\n\n J = top.driver.calc_gradient(inputs=['first.x'],\n outputs=['last.f_xy'],\n mode='forward')\n\n top.nest.missing_deriv_policy = 'assume_zero'\n J = top.driver.calc_gradient(inputs=['first.x'],\n outputs=['last.f_xy'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 0.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.x', 'nest.stuff'],\n outputs=['nest.f_xy', 'nest.junk'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 5.0, .001)\n assert_rel_error(self, J[0, 1], 0.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)\n assert_rel_error(self, J[1, 1], 0.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.stuff', 'nest.x'],\n outputs=['nest.junk', 'nest.f_xy', ],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 0.0, .001)\n assert_rel_error(self, J[0, 1], 0.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)\n assert_rel_error(self, J[1, 1], 5.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.stuff', 'nest.x'],\n outputs=['nest.junk', 'nest.f_xy', ],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 0.0, .001)\n assert_rel_error(self, J[0, 1], 0.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)\n assert_rel_error(self, J[1, 1], 5.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.stuff', 'nest.x'],\n outputs=['nest.f_xy', ],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 0.0, .001)\n assert_rel_error(self, J[0, 1], 5.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.x', 'nest.stuff'],\n outputs=['nest.f_xy', ],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 5.0, .001)\n assert_rel_error(self, J[0, 1], 0.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.x', 'nest.stuff'],\n outputs=['nest.f_xy', 'nest.junk'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 5.0, .001)\n assert_rel_error(self, J[0, 1], 0.0, .001)\n assert_rel_error(self, J[1, 0], 0.0, .001)\n assert_rel_error(self, J[1, 1], 0.0, .001)\n\n J = top.driver.calc_gradient(inputs=['nest.stuff'],\n outputs=['nest.junk'],\n mode='forward')\n\n assert_rel_error(self, J[0, 0], 0.0, .001)\n\n top.nest.missing_deriv_policy = 'error'\n J = top.driver.calc_gradient(inputs=['nest.stuff'],\n outputs=['nest.junk'],\n mode='forward')", "metadata": "root.Testcase_derivatives.test_nested", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 1247 }, { "content": " def test_nested_2Darray(self):\n\n top = set_as_top(Assembly())\n top.add('nest', Assembly())\n top.nest.add('comp', ArrayComp2D())\n\n top.driver.workflow.add(['nest'])\n top.nest.driver.workflow.add(['comp'])\n top.nest.create_passthrough('comp.x')\n top.nest.create_passthrough('comp.y')\n top.run()\n\n J = top.driver.calc_gradient(inputs=['nest.x',],\n outputs=['nest.y'],\n mode='forward')\n\n diff = J - top.nest.comp.J\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x',],\n outputs=['nest.y'],\n mode='adjoint')\n diff = J - top.nest.comp.J\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, 0]',],\n outputs=['nest.y[0, 0]'],\n mode='forward')\n\n diff = J - top.nest.comp.J[0, 0]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, 0]',],\n outputs=['nest.y[0, 0]'],\n mode='adjoint')\n\n diff = J - top.nest.comp.J[0, 0]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, 1]',],\n outputs=['nest.y[1, 0]'],\n mode='forward')\n\n diff = J - top.nest.comp.J[1, 2]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, 1]',],\n outputs=['nest.y[1, 0]'],\n mode='adjoint')\n\n diff = J - top.nest.comp.J[1, 2]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, 1]',],\n outputs=['nest.y[1, 0]'],\n mode='fd')\n\n diff = J - top.nest.comp.J[1, 2]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, -1]',],\n outputs=['nest.y[-1, 0]'],\n mode='forward')\n\n diff = J - top.nest.comp.J[1, 2]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, -1]',],\n outputs=['nest.y[-1, 0]'],\n mode='adjoint')\n\n diff = J - top.nest.comp.J[1, 2]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n J = top.driver.calc_gradient(inputs=['nest.x[0, -1]',],\n outputs=['nest.y[-1, 0]'],\n mode='fd')\n\n diff = J - top.nest.comp.J[1, 2]\n assert_rel_error(self, diff.max(), 0.0, .000001)\n\n Jsub = top.nest.comp.J[2:3, 2:3]\n J = top.driver.calc_gradient(inputs=['nest.x[1][:]',],\n outputs=['nest.y[1][:]'],\n mode='forward')\n\n diff = J - Jsub\n\n J = top.driver.calc_gradient(inputs=['nest.x[1][:]',],\n outputs=['nest.y[1][:]'],\n mode='adjoint')\n\n diff = J - Jsub\n\n top.run()\n J = top.driver.calc_gradient(inputs=['nest.x[1][:]',],\n outputs=['nest.y[1][:]'],\n mode='fd')\n diff = J - Jsub", "metadata": "root.Testcase_derivatives.test_nested_2Darray", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 2004 }, { "content": " def test_missing_derivs_error(self):\n self.top = set_as_top(Assembly())\n\n self.top.add('driver', SimpleDriver())\n self.top.add('dis2', SimpleCompMissingDeriv())\n self.top.driver.add_objective('(dis2.y)**2')\n self.top.driver.add_parameter('dis2.x', low=-10.0, high=10.0)\n self.top.driver.add_constraint('dis2.miss_out < 24.0')\n\n self.top.run()\n try:\n J = self.top.driver.calc_gradient(mode='forward')\n except Exception as err:\n self.assertEqual(str(err),\n \"'dis2 (1-dis2): does not provide analytical derivatives for\"\n \" miss_out'\")\n else:\n self.fail(\"exception expected\")\n\n self.top.driver.remove_constraint('dis2.miss_out < 24.0')\n self.top.driver.add_constraint('dis2.y < 24.0')\n self.top.driver.remove_parameter('dis2.x')\n self.top.driver.add_parameter('dis2.miss_in', low=-10.0, high=10.0)\n\n try:\n J = self.top.driver.calc_gradient(mode='forward')\n except Exception as err:\n self.assertEqual(str(err),\n \"'dis2 (1-dis2): does not provide analytical derivatives for\"\n \" miss_in'\")\n else:\n self.fail(\"exception expected\")", "metadata": "root.Testcase_derivatives.test_missing_derivs_error", "header": "['class', 'Testcase_derivatives', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 2899 }, { "content": " def test_simple(self):\n\n top = set_as_top(Assembly())\n top.add('comp', PreComp())\n top.driver.workflow.add('comp')\n\n J = top.driver.calc_gradient(inputs=['comp.x1', 'comp.x2'],\n outputs=['comp.y1', 'comp.y2'],\n mode='forward')\n\n #print J\n # TODO: transform back to original coords\n #assert_rel_error(self, J[0, 0], 2.0, 0.0001)\n #assert_rel_error(self, J[0, 1], 7.0, 0.0001)\n #assert_rel_error(self, J[1, 0], 13.0, 0.0001)\n #assert_rel_error(self, J[1, 1], -3.0, 0.0001)\n\n J = top.driver.calc_gradient(inputs=['comp.x1', 'comp.x2'],\n outputs=['comp.y1', 'comp.y2'],\n mode='adjoint')\n\n assert_rel_error(self, J[0, 0], 2.0, 0.0001)\n assert_rel_error(self, J[0, 1], 7.0, 0.0001)\n assert_rel_error(self, J[1, 0], 13.0, 0.0001)\n assert_rel_error(self, J[1, 1], -3.0, 0.0001)", "metadata": "root.Testcase_preconditioning.test_simple", "header": "['class', 'Testcase_preconditioning', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 3289 }, { "content": " def test_two_comp(self):\n\n top = set_as_top(Assembly())\n\n top.add('comp1', PreComp())\n top.add('comp2', PreComp())\n top.connect('comp1.y1', 'comp2.x1')\n top.connect('comp1.y2', 'comp2.x2')\n\n top.add('driver', SimpleDriver())\n top.driver.workflow.add(['comp1', 'comp2'])\n top.driver.add_parameter('comp1.x1', low=-10, high=10)\n top.driver.add_parameter('comp1.x2', low=-10, high=10)\n top.driver.add_objective('comp2.y1 + comp2.y2')\n\n top.run()\n\n J = top.driver.calc_gradient(mode='forward')\n #print J\n\n J = top.driver.calc_gradient(mode='adjoint')\n assert_rel_error(self, J[0, 0], 82.0, 0.0001)\n assert_rel_error(self, J[0, 1], 93.0, 0.0001)", "metadata": "root.Testcase_preconditioning.test_two_comp", "header": "['class', 'Testcase_preconditioning', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 3315 }, { "content": " def test_two_comp_array(self):\n\n top = set_as_top(Assembly())\n\n top.add('comp1', PreCompArray())\n top.add('comp2', PreCompArray())\n top.connect('comp1.y', 'comp2.x')\n\n top.add('driver', SimpleDriver())\n top.driver.workflow.add(['comp1', 'comp2'])\n top.driver.add_parameter('comp1.x[0]', low=-10, high=10)\n top.driver.add_parameter('comp1.x[1]', low=-10, high=10)\n top.driver.add_objective('comp2.y[0]')\n\n top.run()\n\n J = top.driver.calc_gradient(mode='forward')\n #print J\n\n J = top.driver.calc_gradient(mode='adjoint')\n assert_rel_error(self, J[0, 0], 95.0, 0.0001)\n assert_rel_error(self, J[0, 1], -7.0, 0.0001)", "metadata": "root.Testcase_preconditioning.test_two_comp_array", "header": "['class', 'Testcase_preconditioning', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 3339 }, { "content": " def test_nested_array_element(self):\n\n top = set_as_top(Assembly())\n top.add('nest', Assembly())\n\n top.nest.add('comp1', PreCompArray())\n top.nest.add('comp2', PreCompArray())\n top.nest.add('comp3', PreCompArray())\n top.nest.connect('comp1.y', 'comp2.x')\n top.nest.driver.workflow.add(['comp1', 'comp2', 'comp3'])\n top.nest.create_passthrough('comp1.x')\n top.nest.create_passthrough('comp2.y')\n top.nest.add('yyy', Array([0.0, 0.0], iotype='out'))\n top.nest.add('dumb', Array(array([2.0, 4.0]), iotype='in'))\n top.nest.connect('comp1.y', 'yyy')\n top.nest.connect('dumb', 'comp3.x')\n\n top.add('driver', SimpleDriver())\n top.driver.workflow.add(['nest'])\n top.driver.add_parameter('nest.x[0]', low=-10, high=10)\n top.driver.add_parameter('nest.x[1]', low=-10, high=10)\n top.driver.add_parameter('nest.dumb[0]', low=-10, high=10)\n top.driver.add_parameter('nest.dumb[1]', low=-10, high=10)\n top.driver.add_objective('nest.y[0]')\n top.driver.add_constraint('nest.yyy[0] + nest.yyy[1] < 0')\n\n top.run()\n\n J = top.driver.calc_gradient(mode='forward')\n #print J\n\n J = top.driver.calc_gradient(mode='adjoint')\n #print J\n\n\n assert_rel_error(self, J[0, 0], 95.0, 0.0001)\n assert_rel_error(self, J[0, 1], -7.0, 0.0001)\n assert_rel_error(self, J[0, 2], 0.0, 0.0001)\n assert_rel_error(self, J[0, 3], 0.0, 0.0001)\n assert_rel_error(self, J[1, 0], 15.0, 0.0001)\n assert_rel_error(self, J[1, 1], 4.0, 0.0001)\n assert_rel_error(self, J[1, 2], 0.0, 0.0001)\n assert_rel_error(self, J[1, 3], 0.0, 0.0001)", "metadata": "root.Testcase_preconditioning.test_nested_array_element", "header": "['class', 'Testcase_preconditioning', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 3362 }, { "content": " def test_two_comp_bifurcation(self):\n\n top = set_as_top(Assembly())\n\n top.add('comp1', PreComp())\n top.add('comp2', PreComp())\n top.add('comp3', PreComp())\n top.add('comp4', PreComp())\n top.connect('comp1.y1', 'comp2.x1')\n top.connect('comp1.y2', 'comp2.x2')\n top.connect('comp1.y1', 'comp3.x1')\n top.connect('comp1.y2', 'comp3.x2')\n top.connect('comp2.y1 + comp3.y1', 'comp4.x1')\n top.connect('comp2.y2 - comp3.y2', 'comp4.x2')\n\n top.add('driver', SimpleDriver())\n top.driver.workflow.add(['comp1', 'comp2', 'comp3', 'comp4'])\n top.driver.add_parameter('comp1.x1', low=-10, high=10)\n top.driver.add_parameter('comp1.x2', low=-10, high=10)\n top.driver.add_objective('comp4.y1 + comp2.y1')\n top.driver.add_constraint('comp4.y2 + comp3.y2 < 0')\n\n top.run()\n\n J = top.driver.calc_gradient(mode='forward')\n #print J\n\n J = top.driver.calc_gradient(mode='adjoint')\n assert_rel_error(self, J[0, 0], 475.0, 0.0001)\n assert_rel_error(self, J[0, 1], -35.0, 0.0001)\n assert_rel_error(self, J[1, 0], 2457.0, 0.0001)\n assert_rel_error(self, J[1, 1], -82.0, 0.0001)", "metadata": "root.Testcase_preconditioning.test_two_comp_bifurcation", "header": "['class', 'Testcase_preconditioning', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 3406 } ]

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[ { "content": "import io\nimport json\nimport os\nfrom unittest import TestCase\n\nfrom mock import patch\n\nfrom jira.resources import Issue\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class BaseTestCase(TestCase):\n\n\n", "metadata": "root.BaseTestCase", "header": "['module', '___EOS___']", "index": 10 }, { "content": " def get_asset_path(self, filename):\n return os.path.join(\n os.path.dirname(__file__),\n 'assets',\n filename\n )", "metadata": "root.BaseTestCase.get_asset_path", "header": "['class', 'BaseTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 11 }, { "content": " def get_asset_contents(self, filename, mode='r'):\n path = self.get_asset_path(filename)\n\n with io.open(path, mode, encoding='utf-8') as r:\n return r.read()", "metadata": "root.BaseTestCase.get_asset_contents", "header": "['class', 'BaseTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 18 }, { "content": " def rehydrate_issue(self, filename):\n stored = json.loads(self.get_asset_contents(filename))\n return Issue(\n stored['options'],\n None,\n stored['raw'],\n )", "metadata": "root.BaseTestCase.rehydrate_issue", "header": "['class', 'BaseTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 24 }, { "content": " def get_empty_status(self):\n return {\n 'ready': {\n 'files': [],\n 'links': {},\n 'fields': {},\n 'new_comment': '',\n },\n 'uncommitted': {\n 'files': [],\n 'links': {},\n 'fields': {},\n 'new_comment': '',\n },\n 'local_uncommitted': {\n 'files': [],\n },\n 'up_to_date': True,\n }", "metadata": "root.BaseTestCase.get_empty_status", "header": "['class', 'BaseTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 32 } ]

[ { "span": "from mock import patch", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 22 } ]

[]

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[ { "content": " @files( [( [\"%s%s.bed\" % (x,y) for y in REPLICATES], \"%s.reproducibility\" % x, x) for x in TRACKS_EXPERIMENTS ] )\n def makeReproducibility( infile, outfile, track ):\n '''compute overlap between intervals.\n\n Note the exon percentages are approxmations assuming that there are\n not more than one intervals in one set overlapping one in the other set.\n '''\n\n dbhandle = sqlite3.connect( PARAMS[\"database\"] )\n\n data = []\n for replicate in REPLICATES:\n cc = dbhandle.cursor()\n statement = \"SELECT contig, start, end, peakval FROM %(track)s%(replicate)s_intervals\" % locals()\n cc.execute( statement )\n data.append( cc.fetchall() )\n\n ma = int(max( [ x[3] for x in itertools.chain( *data ) ] ) + 1)\n\n nexons1, nexons2, nexons_overlapping = [0] * ma, [0] * ma, [0] * ma\n nbases1, nbases2, nbases_overlapping = [0] * ma, [0] * ma, [0] * ma\n\n idx = IndexedGenome.IndexedGenome()\n for contig, start, end, peakval in data[0]:\n peakval = int(peakval)\n for x in range( 0, peakval):\n nexons1[x] += 1\n nbases1[x] += end - start\n idx.add( contig, start, end, peakval )\n\n for contig, start, end, peakval in data[1]:\n peakval = int(peakval)\n for x in range( 0, peakval):\n nexons2[x] += 1\n nbases2[x] += end - start\n\n try:\n intervals = list(idx.get( contig, start, end ))\n except KeyError:\n continue\n\n if len(intervals) == 0: continue\n\n for other_start,other_end,other_peakval in intervals:\n ovl = min(end, other_end ) - max(start, other_start )\n for x in range( 0, min( other_peakval, peakval) ):\n nexons_overlapping[x] += 1\n nbases_overlapping[x] += ovl\n\n outs = open( outfile, \"w\" )\n outs.write(\"peakval\\tnexons1\\tnexons2\\tnexons_union\\tnexons_ovl\\tpexons_ovl\\tpexons_union\\tnbases1\\tnbases2\\tnbases_union\\tnbases_ovl\\tpbases_ovl\\tpbases_union\\n\" )\n total_bases = nbases1[0] + nbases2[0] - nbases_overlapping[0]\n for x in range(0, ma):\n bases_union = nbases1[x] + nbases2[x] - nbases_overlapping[x]\n exons_union = nexons1[x] + nexons2[x] - nexons_overlapping[x]\n outs.write( \"\\t\".join( (str(x),\n str(nexons1[x]),\n str(nexons2[x]),\n str(exons_union),\n str(nexons_overlapping[x]),\n IOTools.prettyPercent( nbases_overlapping[x], bases_union),\n IOTools.prettyPercent( bases_union, total_bases),\n str(nbases1[x]),\n str(nbases2[x]),\n str(bases_union),\n str(nbases_overlapping[x]),\n IOTools.prettyPercent( nbases_overlapping[x], bases_union),\n IOTools.prettyPercent( bases_union, total_bases),\n )) + \"\\n\" )\n\n outs.close()", "metadata": "root.makeReproducibility", "header": "['module', '___EOS___']", "index": 3067 }, { "content": "@follows( buildGeneRegions )\n@files( [ (\"%s.bed\" % x, \"%s.readcounts\" % x ) for x in TRACKS_NOT_UNSTIM ] )\ndef buildIntervalCounts( infile, outfile ):\n '''count read density in bed files.\n '''\n track = outfile[:-len(\".readcounts\")]\n\n cellline, condition, replicate = splitTrack( track )\n\n samfiles_fg, samfiles_bg = [], []\n\n # save original, because condition is later assigned to\n one = cellline and condition\n two = condition\n\n if REPLICATES:\n if one:\n for replicate in REPLICATES:\n samfiles_fg.append( FILEPATTERN % locals() + BAM_SUFFIX )\n condition = \"Unstim\"\n for replicate in REPLICATES:\n samfiles_bg.append( FILEPATTERN % locals() + BAM_SUFFIX )\n elif two:\n for cellline in CELLLINES:\n for replicate in REPLICATES:\n samfiles_fg.append( FILEPATTERN % locals() + BAM_SUFFIX )\n condition = \"Unstim\"\n for cellline in CELLLINES:\n for replicate in REPLICATES:\n samfiles_bg.append( FILEPATTERN % locals() + BAM_SUFFIX )\n\n else:\n samfiles_fg.append( FILEPATTERN % locals() + BAM_SUFFIX )\n condition = \"Unstim\"\n if os.path.exists(FILEPATTERN % locals() + BAM_SUFFIX ):\n samfiles_bg.append( FILEPATTERN % locals() + BAM_SUFFIX )\n else:\n samfiles_bg = samfiles_fg\n \n samfiles_fg = \",\".join(samfiles_fg)\n samfiles_bg = \",\".join(samfiles_bg)\n\n tmpfile1 = P.getTempFilename( os.getcwd() ) + \".fg\"\n tmpfile2 = P.getTempFilename( os.getcwd() ) + \".bg\"\n\n to_cluster = True\n\n statement = \"\"\"\n cat < %(infile)s |\\\n python %(scriptsdir)s/bed2gff.py --as-gtf |\\\n\tpython %(scriptsdir)s/gtf2table.py \\\n\t\t--counter=read-coverage \\\n\t\t--log=%(outfile)s.log \\\n\t\t--bam-file=%(samfiles_fg)s \\\n\t> %(tmpfile1)s\"\"\"\n\n P.run( **dict( locals().items() + PARAMS.items() ) )\n\n statement = \"\"\"\n cat < %(infile)s |\\\n python %(scriptsdir)s/bed2gff.py --as-gtf |\\\n\tpython %(scriptsdir)s/gtf2table.py \\\n\t\t--counter=read-coverage \\\n\t\t--log=%(outfile)s.log \\\n\t\t--bam-file=%(samfiles_bg)s \\\n\t> %(tmpfile2)s\"\"\"\n\n P.run( **dict( locals().items() + PARAMS.items() ) )\n\n statement = '''\n python %(toolsdir)s/combine_tables.py \\\n --add-file-prefix \\\n --regex-filename=\"[.](\\S+)$\" \\\n %(tmpfile1)s %(tmpfile2)s > %(outfile)s\n '''\n\n P.run( **dict( locals().items() + PARAMS.items() ) )\n os.unlink( tmpfile1 )\n os.unlink( tmpfile2 )", "metadata": "root.buildIntervalCounts", "header": "['module', '___EOS___']", "index": 4629 } ]

[ { "span": "for replicate in REPLICATES:", "start_line": 3078, "start_column": 8, "end_line": 3078, "end_column": 36 }, { "span": "for replicate in REPLICATES:", "start_line": 4646, "start_column": 12, "end_line": 4646, "end_column": 40 }, { "span": "for replicate in REPLICATES:", "start_line": 4649, "start_column": 12, "end_line": 4649, "end_column": 40 }, { "span": "for cellline in CELLLINES:", "start_line": 4652, "start_column": 12, "end_line": 4652, "end_column": 38 }, { "span": "for replicate in REPLICATES:", "start_line": 4653, "start_column": 16, "end_line": 4653, "end_column": 44 }, { "span": "for cellline in CELLLINES:", "start_line": 4656, "start_column": 12, "end_line": 4656, "end_column": 38 }, { "span": "for replicate in REPLICATES:", "start_line": 4657, "start_column": 16, "end_line": 4657, "end_column": 44 } ]

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[ { "content": "#!/usr/bin/env python\n\n'''\n'''\n\n__docformat__ = 'restructuredtext'\n__version__ = '$Id: $'\n\nimport pyglet\nfrom pyglet.input.base import \\\n Tablet, TabletCanvas, TabletCursor, DeviceOpenException\nfrom pyglet.input.x11_xinput import \\\n get_devices, XInputWindowEventDispatcher, DeviceResponder\n\ntry:\n from pyglet.libs.x11 import xinput as xi\n _have_xinput = True\nexcept:\n _have_xinput = False\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "except:", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 7 } ]

[]

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[ { "content": "def __process_tokens_internal(tokens, start_at=0):\n if __is_dict_start(tokens[start_at]) and start_at == 0: # the top object\n return __process_tokens_internal(tokens, start_at=1)\n\n log.debug(\"__process_tokens, start_at=\"+str(start_at))\n token_no = start_at\n result = {}\n current_key = None\n while token_no < len(tokens):\n token = tokens[token_no]\n log.debug(\"PROCESSING TOKEN %d: %s\", token_no, token)\n if __is_quoted_string(token):\n log.debug(\" TYPE: QUOTED STRING \")\n if current_key is None:\n current_key = __get_quoted_string(token)\n log.debug(\" KEY: %s\", current_key)\n else:\n result[current_key] = __get_quoted_string(token)\n log.debug(\" %s -> %s\", current_key, result[current_key])\n current_key = None\n elif __is_datatype(token):\n log.debug(\" TYPE: DATATYPE: %s \", token)\n result[current_key] = __get_datatype(token)\n log.debug(\" %s -> %s\", current_key, str(result[current_key]))\n current_key = None\n elif __is_boolean(token):\n log.debug(\" TYPE: BOOLEAN \")\n result[current_key] = __get_boolean(token)\n log.debug(\" %s -> %s\", current_key, str(result[current_key]))\n current_key = None\n elif __is_int(token):\n log.debug(\" TYPE: INT \")\n result[current_key] = __get_int(token)\n log.debug(\" %s -> %s\", current_key, str(result[current_key]))\n current_key = None\n elif __is_long(token):\n log.debug(\" TYPE: LONG \")\n result[current_key] = __get_long(token)\n log.debug(\" %s -> %s\", current_key, str(result[current_key]))\n current_key = None\n elif __is_undefined(token):\n log.debug(\" TYPE: UNDEFINED \")\n log.debug(\" %s -> undefined (Adding as None to map)\", current_key)\n result[current_key] = None\n current_key = None\n elif __is_dict_start(token):\n log.debug(\" TYPE: DICT START\")\n dict_value, token_no = __process_tokens_internal(tokens, start_at=token_no+1)\n log.debug(\" DICT = %s \", dict_value)\n result[current_key] = dict_value\n log.debug(\" %s -> %s\", current_key, str(result[current_key]))\n current_key = None\n elif __is_dict_end(token):\n log.debug(\" TYPE: DICT END\")\n return result, token_no\n elif __is_assignment(token):\n log.debug(\" TYPE: ASSIGNMENT\")\n is_assignment = True\n else:\n raise CommandExecutionError('Unknown token! Token: {0}'.format(token))\n\n token_no = token_no + 1", "metadata": "root.__process_tokens_internal", "header": "['module', '___EOS___']", "index": 242 } ]

[ { "span": "is_assignment ", "start_line": 299, "start_column": 12, "end_line": 299, "end_column": 25 } ]

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[ { "content": " def test_full_hydrate(self):\n basic = BasicResource()\n basic_bundle_1 = Bundle(data={\n 'name': 'Daniel',\n 'view_count': 6,\n 'date_joined': aware_datetime(2010, 2, 15, 12, 0, 0)\n })\n\n # Now load up the data.\n hydrated = basic.full_hydrate(basic_bundle_1)\n\n self.assertEqual(hydrated.data['name'], 'Daniel')\n self.assertEqual(hydrated.data['view_count'], 6)\n self.assertEqual(hydrated.data['date_joined'], aware_datetime(2010, 2, 15, 12, 0, 0))\n self.assertEqual(hydrated.obj.name, 'Daniel')\n self.assertEqual(hydrated.obj.view_count, 6)\n self.assertEqual(hydrated.obj.date_joined, aware_datetime(2010, 2, 15, 12, 0, 0))\n\n another = AnotherBasicResource()\n another_bundle_1 = Bundle(data={\n 'name': 'Daniel',\n 'view_count': 6,\n 'date_joined': aware_datetime(2010, 2, 15, 12, 0, 0),\n 'aliases': ['test', 'test1'],\n 'meta': {'foo': 'bar'},\n 'owed': '12.53',\n })\n\n # Now load up the data (without the ``bar`` key).\n hydrated = another.full_hydrate(another_bundle_1)\n\n self.assertEqual(hydrated.data['name'], 'Daniel')\n self.assertEqual(hydrated.data['view_count'], 6)\n self.assertEqual(hydrated.data['date_joined'], aware_datetime(2010, 2, 15, 12, 0, 0))\n self.assertEqual(hydrated.data['aliases'], ['test', 'test1'])\n self.assertEqual(hydrated.data['meta'], {'foo': 'bar'})\n self.assertEqual(hydrated.data['owed'], '12.53')\n self.assertEqual(hydrated.obj.name, 'Daniel')\n self.assertEqual(hydrated.obj.view_count, 6)\n self.assertEqual(hydrated.obj.date_joined, aware_datetime(2010, 2, 15, 12, 0, 0))\n self.assertEqual(hasattr(hydrated.obj, 'bar'), False)\n\n another_bundle_2 = Bundle(data={\n 'name': 'Daniel',\n 'view_count': 6,\n 'date_joined': aware_datetime(2010, 2, 15, 12, 0, 0),\n 'bar': True,\n })\n\n # Now load up the data (this time with the ``bar`` key).\n hydrated = another.full_hydrate(another_bundle_2)\n\n self.assertEqual(hydrated.data['name'], 'Daniel')\n self.assertEqual(hydrated.data['view_count'], 6)\n self.assertEqual(hydrated.data['date_joined'], aware_datetime(2010, 2, 15, 12, 0, 0))\n self.assertEqual(hydrated.obj.name, 'Daniel')\n self.assertEqual(hydrated.obj.view_count, 6)\n self.assertEqual(hydrated.obj.date_joined, aware_datetime(2010, 2, 15, 12, 0, 0))\n self.assertEqual(hydrated.obj.bar, 'O HAI BAR!')\n\n # Test that a nullable value with a previous non-null value\n # can be set to None.\n nullable = NullableNameResource()\n obj = nullable._meta.object_class()\n obj.name = \"Daniel\"\n null_bundle = Bundle(obj=obj, data={'name': None})\n hydrated = nullable.full_hydrate(null_bundle)\n\n self.assertTrue(hydrated.obj.name is None)\n\n # Test that a nullable value with a previous non-null value\n # is not overridden if no value was given\n obj = nullable._meta.object_class()\n obj.name = \"Daniel\"\n empty_null_bundle = Bundle(obj=obj, data={})\n hydrated = nullable.full_hydrate(empty_null_bundle)\n\n self.assertEquals(hydrated.obj.name, \"Daniel\")", "metadata": "root.ResourceTestCase.test_full_hydrate", "header": "['class', 'ResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 333 }, { "content": " def test_fields(self):\n # Different from the ``ResourceTestCase.test_fields``, we're checking\n # some related bits here & self-referential bits later on.\n resource_1 = RelatedNoteResource()\n self.assertEqual(len(resource_1.fields), 8)\n self.assert_('author' in resource_1.fields)\n self.assertTrue(isinstance(resource_1.fields['author'], fields.ToOneField))\n self.assertEqual(resource_1.fields['author']._resource, resource_1.__class__)\n self.assertEqual(resource_1.fields['author'].instance_name, 'author')\n self.assertTrue('subjects' in resource_1.fields)\n self.assertTrue(isinstance(resource_1.fields['subjects'], fields.ToManyField))\n self.assertEqual(resource_1.fields['subjects']._resource, resource_1.__class__)\n self.assertEqual(resource_1.fields['subjects'].instance_name, 'subjects')\n\n # Sanity check the other introspected fields.\n annr = AutoNowNoteResource()\n self.assertEqual(len(annr.fields), 8)\n self.assertEqual(sorted(annr.fields.keys()), ['content', 'created', 'id', 'is_active', 'resource_uri', 'slug', 'title', 'updated'])\n\n self.assertTrue(isinstance(annr.fields['content'], fields.CharField))\n self.assertEqual(annr.fields['content'].attribute, 'content')\n self.assertEqual(annr.fields['content'].blank, True)\n self.assertEqual(annr.fields['content']._default, '')\n self.assertEqual(annr.fields['content'].instance_name, 'content')\n self.assertEqual(annr.fields['content'].null, False)\n self.assertEqual(annr.fields['content'].readonly, False)\n self.assertEqual(annr.fields['content'].unique, False)\n self.assertEqual(annr.fields['content'].value, None)\n\n self.assertTrue(isinstance(annr.fields['created'], fields.DateTimeField))\n self.assertEqual(annr.fields['created'].attribute, 'created')\n self.assertEqual(annr.fields['created'].blank, False)\n self.assertTrue(isinstance(annr.fields['created']._default(), datetime.datetime))\n self.assertEqual(annr.fields['created'].instance_name, 'created')\n self.assertEqual(annr.fields['created'].null, True)\n self.assertEqual(annr.fields['created'].readonly, False)\n self.assertEqual(annr.fields['created'].unique, False)\n self.assertEqual(annr.fields['created'].value, None)\n\n self.assertTrue(isinstance(annr.fields['id'], fields.IntegerField))\n self.assertEqual(annr.fields['id'].attribute, 'id')\n self.assertEqual(annr.fields['id'].blank, True)\n self.assertEqual(annr.fields['id']._default, '')\n self.assertEqual(annr.fields['id'].instance_name, 'id')\n self.assertEqual(annr.fields['id'].null, False)\n self.assertEqual(annr.fields['id'].readonly, False)\n self.assertEqual(annr.fields['id'].unique, True)\n self.assertEqual(annr.fields['id'].value, None)\n\n self.assertTrue(isinstance(annr.fields['is_active'], fields.BooleanField))\n self.assertEqual(annr.fields['is_active'].attribute, 'is_active')\n self.assertEqual(annr.fields['is_active'].blank, True)\n self.assertEqual(annr.fields['is_active']._default, True)\n self.assertEqual(annr.fields['is_active'].instance_name, 'is_active')\n self.assertEqual(annr.fields['is_active'].null, False)\n self.assertEqual(annr.fields['is_active'].readonly, False)\n self.assertEqual(annr.fields['is_active'].unique, False)\n self.assertEqual(annr.fields['is_active'].value, None)\n\n self.assertTrue(isinstance(annr.fields['resource_uri'], fields.CharField))\n self.assertEqual(annr.fields['resource_uri'].attribute, None)\n self.assertEqual(annr.fields['resource_uri'].blank, False)\n self.assertEqual(annr.fields['resource_uri']._default, fields.NOT_PROVIDED)\n self.assertEqual(annr.fields['resource_uri'].instance_name, 'resource_uri')\n self.assertEqual(annr.fields['resource_uri'].null, False)\n self.assertEqual(annr.fields['resource_uri'].readonly, True)\n self.assertEqual(annr.fields['resource_uri'].unique, False)\n self.assertEqual(annr.fields['resource_uri'].value, None)\n\n self.assertTrue(isinstance(annr.fields['slug'], fields.CharField))\n self.assertEqual(annr.fields['slug'].attribute, 'slug')\n self.assertEqual(annr.fields['slug'].blank, False)\n self.assertEqual(annr.fields['slug']._default, fields.NOT_PROVIDED)\n self.assertEqual(annr.fields['slug'].instance_name, 'slug')\n self.assertEqual(annr.fields['slug'].null, False)\n self.assertEqual(annr.fields['slug'].readonly, False)\n self.assertEqual(annr.fields['slug'].unique, True)\n self.assertEqual(annr.fields['slug'].value, None)\n\n self.assertTrue(isinstance(annr.fields['title'], fields.CharField))\n self.assertEqual(annr.fields['title'].attribute, 'title')\n self.assertEqual(annr.fields['title'].blank, False)\n self.assertEqual(annr.fields['title']._default, fields.NOT_PROVIDED)\n self.assertEqual(annr.fields['title'].instance_name, 'title')\n self.assertEqual(annr.fields['title'].null, False)\n self.assertEqual(annr.fields['title'].readonly, False)\n self.assertEqual(annr.fields['title'].unique, False)\n self.assertEqual(annr.fields['title'].value, None)\n\n self.assertTrue(isinstance(annr.fields['updated'], fields.DateTimeField))\n self.assertEqual(annr.fields['updated'].attribute, 'updated')\n self.assertEqual(annr.fields['updated'].blank, True)\n self.assertTrue(isinstance(annr.fields['updated']._default(), datetime.datetime))\n self.assertEqual(annr.fields['updated'].instance_name, 'updated')\n self.assertEqual(annr.fields['updated'].null, False)\n self.assertEqual(annr.fields['updated'].readonly, False)\n self.assertEqual(annr.fields['updated'].unique, False)\n self.assertEqual(annr.fields['updated'].value, None)", "metadata": "root.ModelResourceTestCase.test_fields", "header": "['class', 'ModelResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 1114 }, { "content": " def test_put_detail(self):\n self.assertEqual(Note.objects.count(), 6)\n resource = NoteResource()\n request = MockRequest()\n request.GET = {'format': 'json'}\n request.method = 'PUT'\n request.raw_post_data = '{\"content\": \"The cat is back. The dog coughed him up out back.\", \"created\": \"2010-04-03 20:05:00\", \"is_active\": true, \"slug\": \"cat-is-back\", \"title\": \"The Cat Is Back\", \"updated\": \"2010-04-03 20:05:00\"}'\n\n resp = resource.put_detail(request, pk=10)\n self.assertEqual(resp.status_code, 201)\n self.assertEqual(Note.objects.count(), 7)\n new_note = Note.objects.get(slug='cat-is-back')\n self.assertEqual(new_note.content, \"The cat is back. The dog coughed him up out back.\")\n\n request.raw_post_data = '{\"content\": \"The cat is gone again. I think it was the rabbits that ate him this time.\", \"created\": \"2010-04-03 20:05:00\", \"is_active\": true, \"slug\": \"cat-is-back\", \"title\": \"The Cat Is Gone\", \"updated\": \"2010-04-03 20:05:00\"}'\n\n resp = resource.put_detail(request, pk=10)\n self.assertEqual(resp.status_code, 204)\n self.assertEqual(Note.objects.count(), 7)\n new_note = Note.objects.get(slug='cat-is-back')\n self.assertEqual(new_note.content, u'The cat is gone again. I think it was the rabbits that ate him this time.')\n\n always_resource = AlwaysDataNoteResource()\n resp = always_resource.put_detail(request, pk=10)\n self.assertEqual(resp.status_code, 202)\n data = json.loads(resp.content)\n self.assertTrue(\"id\" in data)\n self.assertEqual(data[\"id\"], 10)\n self.assertTrue(\"content\" in data)\n self.assertEqual(data[\"content\"], \"The cat is gone again. I think it was the rabbits that ate him this time.\")\n self.assertTrue(\"resource_uri\" in data)\n self.assertTrue(\"title\" in data)\n self.assertTrue(\"is_active\" in data)\n\n # Now make sure we can null-out a relation.\n # Associate some data first.\n new_note = Note.objects.get(slug='cat-is-back')\n new_note.author = User.objects.get(username='johndoe')\n new_note.save()\n nullable_resource = NullableRelatedNoteResource()\n request = MockRequest()\n request.GET = {'format': 'json'}\n request.method = 'PUT'\n request.raw_post_data = '{\"content\": \"The cat is back. The dog coughed him up out back.\", \"created\": \"2010-04-03 20:05:00\", \"is_active\": true, \"slug\": \"cat-is-back\", \"title\": \"The Cat Is Back\", \"updated\": \"2010-04-03 20:05:00\", \"author\": null}'\n\n resp = nullable_resource.put_detail(request, pk=10)\n self.assertEqual(resp.status_code, 204)\n self.assertEqual(Note.objects.count(), 7)\n new_note = Note.objects.get(slug='cat-is-back')\n self.assertEqual(new_note.author, None)", "metadata": "root.ModelResourceTestCase.test_put_detail", "header": "['class', 'ModelResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 1720 }, { "content": " def test_post_list(self):\n self.assertEqual(Note.objects.count(), 6)\n resource = NoteResource()\n request = MockRequest()\n request.GET = {'format': 'json'}\n request.method = 'POST'\n request.raw_post_data = '{\"content\": \"The cat is back. The dog coughed him up out back.\", \"created\": \"2010-04-03 20:05:00\", \"is_active\": true, \"slug\": \"cat-is-back\", \"title\": \"The Cat Is Back\", \"updated\": \"2010-04-03 20:05:00\"}'\n\n resp = resource.post_list(request)\n self.assertEqual(resp.status_code, 201)\n self.assertEqual(Note.objects.count(), 7)\n new_note = Note.objects.get(slug='cat-is-back')\n self.assertEqual(new_note.content, \"The cat is back. The dog coughed him up out back.\")\n\n always_resource = AlwaysDataNoteResource()\n resp = always_resource.post_list(request)\n self.assertEqual(resp.status_code, 201)\n data = json.loads(resp.content)\n self.assertTrue(\"id\" in data)\n self.assertEqual(data[\"id\"], 8)\n self.assertTrue(\"content\" in data)\n self.assertEqual(data[\"content\"], \"The cat is back. The dog coughed him up out back.\")\n self.assertTrue(\"resource_uri\" in data)\n self.assertTrue(\"title\" in data)\n self.assertTrue(\"is_active\" in data)", "metadata": "root.ModelResourceTestCase.test_post_list", "header": "['class', 'ModelResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 1771 }, { "content": " def test_patch_detail(self):\n self.assertEqual(Note.objects.count(), 6)\n resource = NoteResource()\n request = HttpRequest()\n request.GET = {'format': 'json'}\n request.method = 'PATCH'\n request._read_started = False\n request._raw_post_data = request._body = '{\"content\": \"The cat is back. The dog coughed him up out back.\", \"created\": \"2010-04-03 20:05:00\"}'\n\n resp = resource.patch_detail(request, pk=10)\n self.assertEqual(resp.status_code, 404)\n\n resp = resource.patch_detail(request, pk=1)\n self.assertEqual(resp.status_code, 202)\n self.assertEqual(Note.objects.count(), 6)\n note = Note.objects.get(pk=1)\n self.assertEqual(note.content, \"The cat is back. The dog coughed him up out back.\")\n self.assertEqual(note.created, aware_datetime(2010, 4, 3, 20, 5))\n\n request._raw_post_data = request._body = '{\"content\": \"The cat is gone again. I think it was the rabbits that ate him this time.\"}'\n\n resp = resource.patch_detail(request, pk=1)\n self.assertEqual(resp.status_code, 202)\n self.assertEqual(Note.objects.count(), 6)\n new_note = Note.objects.get(pk=1)\n self.assertEqual(new_note.content, u'The cat is gone again. I think it was the rabbits that ate him this time.')\n\n always_resource = AlwaysDataNoteResource()\n request._raw_post_data = request._body = '{\"content\": \"Wait, now the cat is back.\"}'\n resp = always_resource.patch_detail(request, pk=1)\n self.assertEqual(resp.status_code, 202)\n data = json.loads(resp.content)\n self.assertTrue(\"id\" in data)\n self.assertEqual(data[\"id\"], 1)\n self.assertTrue(\"content\" in data)\n self.assertEqual(data[\"content\"], u'Wait, now the cat is back.')\n self.assertTrue(\"resource_uri\" in data)\n self.assertTrue(\"title\" in data)\n self.assertTrue(\"is_active\" in data)", "metadata": "root.ModelResourceTestCase.test_patch_detail", "header": "['class', 'ModelResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 1883 }, { "content": " def test_readonly_full_hydrate(self):\n rornr = ReadOnlyRelatedNoteResource()\n note = Note.objects.get(pk=1)\n dbundle = Bundle(obj=note)\n\n # Make sure the field is there on read.\n dehydrated = rornr.full_dehydrate(dbundle)\n self.assertTrue('author' in dehydrated.data)\n\n # Now check that it can be omitted in ``full_hydrate``\n hbundle = Bundle(obj=note, data={\n 'name': 'Daniel',\n 'view_count': 6,\n 'date_joined': aware_datetime(2010, 2, 15, 12, 0, 0),\n })\n hydrated = rornr.full_hydrate(hbundle)\n self.assertEqual(hydrated.obj.author.username, 'johndoe')\n\n # It also shouldn't accept a new value & should silently ignore it.\n hbundle_2 = Bundle(obj=note, data={\n 'name': 'Daniel',\n 'view_count': 6,\n 'date_joined': aware_datetime(2010, 2, 15, 12, 0, 0),\n 'author': '/api/v1/users/2/',\n })\n hydrated_2 = rornr.full_hydrate(hbundle_2)\n self.assertEqual(hydrated_2.obj.author.username, 'johndoe')", "metadata": "root.ModelResourceTestCase.test_readonly_full_hydrate", "header": "['class', 'ModelResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 2923 }, { "content": " def test_debug_on_without_full(self):\n settings.DEBUG = True\n settings.TASTYPIE_FULL_DEBUG = False\n mail.outbox = []\n\n resp = self.resource.wrap_view('get_list')(self.request, pk=1)\n self.assertEqual(resp.status_code, 500)\n content = json.loads(resp.content)\n self.assertEqual(content['error_message'], 'Something blew up.')\n self.assertTrue(len(content['traceback']) > 0)\n self.assertEqual(len(mail.outbox), 0)", "metadata": "root.BustedResourceTestCase.test_debug_on_without_full", "header": "['class', 'BustedResourceTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 3051 } ]

[ { "span": "self.assertTrue(hydrated.obj.name is None)", "start_line": 401, "start_column": 8, "end_line": 401, "end_column": 50 }, { "span": "self.assertTrue('subjects' in resource_1.fields)", "start_line": 1123, "start_column": 8, "end_line": 1123, "end_column": 56 }, { "span": "self.assertTrue(\"id\" in data)", "start_line": 1746, "start_column": 8, "end_line": 1746, "end_column": 37 }, { "span": "self.assertTrue(\"content\" in data)", "start_line": 1748, "start_column": 8, "end_line": 1748, "end_column": 42 }, { "span": "self.assertTrue(\"resource_uri\" in data)", "start_line": 1750, "start_column": 8, "end_line": 1750, "end_column": 47 }, { "span": "self.assertTrue(\"title\" in data)", "start_line": 1751, "start_column": 8, "end_line": 1751, "end_column": 40 }, { "span": "self.assertTrue(\"is_active\" in data)", "start_line": 1752, "start_column": 8, "end_line": 1752, "end_column": 44 }, { "span": "self.assertTrue(\"id\" in data)", "start_line": 1789, "start_column": 8, "end_line": 1789, "end_column": 37 }, { "span": "self.assertTrue(\"content\" in data)", "start_line": 1791, "start_column": 8, "end_line": 1791, "end_column": 42 }, { "span": "self.assertTrue(\"resource_uri\" in data)", "start_line": 1793, "start_column": 8, "end_line": 1793, "end_column": 47 }, { "span": "self.assertTrue(\"title\" in data)", "start_line": 1794, "start_column": 8, "end_line": 1794, "end_column": 40 }, { "span": "self.assertTrue(\"is_active\" in data)", "start_line": 1795, "start_column": 8, "end_line": 1795, "end_column": 44 }, { "span": "self.assertTrue(\"id\" in data)", "start_line": 1915, "start_column": 8, "end_line": 1915, "end_column": 37 }, { "span": "self.assertTrue(\"content\" in data)", "start_line": 1917, "start_column": 8, "end_line": 1917, "end_column": 42 }, { "span": "self.assertTrue(\"resource_uri\" in data)", "start_line": 1919, "start_column": 8, "end_line": 1919, "end_column": 47 }, { "span": "self.assertTrue(\"title\" in data)", "start_line": 1920, "start_column": 8, "end_line": 1920, "end_column": 40 }, { "span": "self.assertTrue(\"is_active\" in data)", "start_line": 1921, "start_column": 8, "end_line": 1921, "end_column": 44 }, { "span": "self.assertTrue('author' in dehydrated.data)", "start_line": 2930, "start_column": 8, "end_line": 2930, "end_column": 52 }, { "span": "self.assertTrue(len(content['traceback']) > 0)", "start_line": 3060, "start_column": 8, "end_line": 3060, "end_column": 54 } ]

[]

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[ { "content": "def resolve(url):\n try:\n data = str(url).replace('\\r','').replace('\\n','').replace('\\t','')\n doregex = re.compile('\\$doregex\\[(.+?)\\]').findall(data)\n\n for i in range(0, 5):\n for x in doregex:\n try:\n if not '$doregex[%s]' % x in data: raise Exception()\n\n regex = re.compile('<regex>(.+?)</regex>').findall(data)\n regex = [r for r in regex if '<name>%s</name>' % x in r][0]\n\n if '$doregex' in regex: raise Exception()\n\n expres = re.compile('<expres>(.+?)</expres>').findall(regex)[0]\n\n try: referer = re.compile('<referer>(.+?)</referer>').findall(regex)[0]\n except: referer = ''\n referer = urllib.unquote_plus(referer)\n referer = client.replaceHTMLCodes(referer)\n referer = referer.encode('utf-8')\n\n page = re.compile('<page>(.+?)</page>').findall(regex)[0]\n page = urllib.unquote_plus(page)\n page = client.replaceHTMLCodes(page)\n page = page.encode('utf-8')\n\n result = client.request(page, referer=referer)\n result = str(result).replace('\\r','').replace('\\n','').replace('\\t','')\n result = str(result).replace('\\/','/')\n\n r = re.compile(expres).findall(result)[0]\n data = data.replace('$doregex[%s]' % x, r)\n except:\n pass\n\n url = re.compile('(.+?)<regex>').findall(data)[0]\n url = client.replaceHTMLCodes(url)\n url = url.encode('utf-8')\n\n if not '$doregex' in url: return url\n except:\n return", "metadata": "root.resolve", "header": "['module', '___EOS___']", "index": 25 } ]

[ { "span": "except: ", "start_line": 43, "start_column": 20, "end_line": 43, "end_column": 27 }, { "span": "except:", "start_line": 59, "start_column": 16, "end_line": 59, "end_column": 23 }, { "span": "except:", "start_line": 67, "start_column": 4, "end_line": 67, "end_column": 11 } ]

[]

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[ { "content": "import os\nimport timeit\nimport numpy as np\nfrom collections import defaultdict\nfrom sklearn.metrics import roc_curve\nfrom sklearn.metrics import auc\nfrom sklearn.cross_validation import ShuffleSplit\nfrom sklearn.linear_model.logistic import LogisticRegression\nfrom sklearn.metrics import confusion_matrix\nfrom sklearn.externals import joblib\nfrom utils import GENRE_LIST, GENRE_DIR, TEST_DIR\nfrom utils import plot_confusion_matrix, plot_roc_curves\nfrom ceps import read_ceps, read_ceps_test\n\ngenre_list = GENRE_LIST\n\n\n\nif __name__ == \"__main__\":\n start = timeit.default_timer()\n print\n print \" Starting classification \\n\"\n print \" Classification running ... \\n\" \n X, y = read_ceps(genre_list)\n train_avg, test_avg, cms = train_model(X, y, \"ceps\", plot=True)\n cm_avg = np.mean(cms, axis=0)\n cm_norm = cm_avg / np.sum(cm_avg, axis=0)\n print \" Classification finished \\n\"\n stop = timeit.default_timer()\n print \" Total time taken (s) = \", (stop - start)\n print \"\\n Plotting confusion matrix ... \\n\"\n plot_confusion_matrix(cm_norm, genre_list, \"ceps\",\"CEPS classifier - Confusion matrix\")\n print \" All Done\\n\"\n print \" See plots in 'graphs' directory \\n\"\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def train_model(X, Y, name, plot=False):\n \"\"\"\n train_model(vector, vector, name[, plot=False])\n \n Trains and saves model to disk.\n \"\"\"\n labels = np.unique(Y)\n\n cv = ShuffleSplit(n=len(X), n_iterations=1, test_fraction=0.3, indices=True, random_state=0)\n\n train_errors = []\n test_errors = []\n\n scores = []\n pr_scores = defaultdict(list)\n precisions, recalls, thresholds = defaultdict(list), defaultdict(list), defaultdict(list)\n\n roc_scores = defaultdict(list)\n tprs = defaultdict(list)\n fprs = defaultdict(list)\n\n clfs = [] # for the median\n\n cms = []\n\n for train, test in cv:\n X_train, y_train = X[train], Y[train]\n X_test, y_test = X[test], Y[test]\n\n clf = LogisticRegression()\n clf.fit(X_train, y_train)\n clfs.append(clf)\n\n train_score = clf.score(X_train, y_train)\n test_score = clf.score(X_test, y_test)\n scores.append(test_score)\n\n train_errors.append(1 - train_score)\n test_errors.append(1 - test_score)\n\n y_pred = clf.predict(X_test)\n cm = confusion_matrix(y_test, y_pred)\n cms.append(cm)\n\n for label in labels:\n y_label_test = np.asarray(y_test == label, dtype=int)\n proba = clf.predict_proba(X_test)\n proba_label = proba[:, label]\n\n fpr, tpr, roc_thresholds = roc_curve(y_label_test, proba_label)\n roc_scores[label].append(auc(fpr, tpr))\n tprs[label].append(tpr)\n fprs[label].append(fpr)\n\n if plot:\n for label in labels:\n scores_to_sort = roc_scores[label]\n median = np.argsort(scores_to_sort)[len(scores_to_sort) / 2]\n desc = \"%s %s\" % (name, genre_list[label])\n plot_roc_curves(roc_scores[label][median], desc, tprs[label][median],fprs[label][median], label='%s vs rest' % genre_list[label])\n\n all_pr_scores = np.asarray(pr_scores.values()).flatten()\n summary = (np.mean(scores), np.std(scores), np.mean(all_pr_scores), np.std(all_pr_scores))\n #print(\"%.3f\\t%.3f\\t%.3f\\t%.3f\\t\" % summary)\n\n #save the trained model to disk\n joblib.dump(clf, 'saved_model/model_ceps.pkl')\n \n return np.mean(train_errors), np.mean(test_errors), np.asarray(cms)", "metadata": "root.train_model", "header": "['module', '___EOS___']", "index": 16 } ]

[ { "span": "import os", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 9 }, { "span": "from utils import GENRE_LIST, GENRE_DIR, TEST_DIR", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 49 }, { "span": "from ceps import read_ceps, read_ceps_test", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 42 } ]

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[ { "content": "def mkTop():\n m = Module('top')\n led = mkLed()\n\n clk = m.Input('CLK')\n rst = m.Input('RST')\n \n params = m.copy_params(led, prefix='A_')\n ports = m.copy_ports(led, prefix='A_', exclude=('CLK', 'RST'))\n \n params = m.copy_params(led, prefix='B_')\n ports = m.copy_ports(led, prefix='B_', exclude=('CLK', 'RST'))\n \n m.Instance(led, 'inst_blinkled_a',\n m.connect_params(led, prefix='A_'),\n m.connect_ports(led, prefix='') + m.connect_ports(led, prefix='A_'))\n \n m.Instance(led, 'inst_blinkled_b',\n m.connect_params(led, prefix='B_'),\n m.connect_ports(led, prefix='') + m.connect_ports(led, prefix='B_'))\n\n return m", "metadata": "root.mkTop", "header": "['module', '___EOS___']", "index": 41 } ]

[ { "span": "params ", "start_line": 48, "start_column": 4, "end_line": 48, "end_column": 10 }, { "span": "ports ", "start_line": 49, "start_column": 4, "end_line": 49, "end_column": 9 } ]

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[ { "content": "def get_tokens():\n\t\n\ttokens = {'INDENT': 'INDENT', 'DEDENT': 'DEDENT'}\n\tfor rule in parser.LEXER.rules:\n\t\tname, pattern = rule.name, rule.re.pattern\n\t\ttokens[rule.name] = rule.re.pattern\n\t\n\tfor word in parser.NAME_LIKE:\n\t\ttokens[word.upper()] = word\n\t\n\treturn tokens", "metadata": "root.get_tokens", "header": "['module', '___EOS___']", "index": 44 } ]

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[ { "content": "# -*- coding:utf-8 -*-\n\n# This code is automatically transpiled by Saklient Translator\n\nimport six\nfrom ...util import Util\nfrom .lbserver import LbServer\nimport saklient\n\nstr = six.text_type\n# module saklient.cloud.resources.lbvirtualip\n\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class LbVirtualIp(object):\n ## ロードバランサの仮想IPアドレス設定。\n \n # (instance field) _virtual_ip_address\n \n ## @return {str}\n \n ## @param {str} v\n # @return {str}\n \n ## VIPアドレス\n virtual_ip_address = property(get_virtual_ip_address, set_virtual_ip_address, None)\n \n # (instance field) _port\n \n ## @return {int}\n \n ## @param {int} v\n # @return {int}\n \n ## ポート番号\n port = property(get_port, set_port, None)\n \n # (instance field) _delay_loop\n \n ## @return {int}\n \n ## @param {int} v\n # @return {int}\n \n ## チェック間隔 [秒]\n delay_loop = property(get_delay_loop, set_delay_loop, None)\n \n # (instance field) _servers\n \n ## @return {saklient.cloud.resources.lbserver.LbServer[]}\n \n ## 実サーバ {@link LbServer} の配列\n servers = property(get_servers, None, None)\n \n ## @ignore\n # @param {any} obj=None\n \n ## 監視対象サーバ設定を追加します。\n # \n # @param {any} settings=None 設定オブジェクト\n # @return {saklient.cloud.resources.lbserver.LbServer}\n \n ## @return {any}\n \n ## 指定したIPアドレスにマッチする監視対象サーバ設定のうち、最初にマッチしたものを取得します。\n # \n # @param {str} address 検索するIPアドレス\n # @return {saklient.cloud.resources.lbserver.LbServer} 監視対象サーバ設定（見つからなかった場合はnull）\n \n ## 指定したIPアドレスにマッチする監視対象サーバ設定をすべて削除します。\n # \n # @param {str} address\n # @return {saklient.cloud.resources.lbvirtualip.LbVirtualIp}\n \n ## @ignore\n # @param {any[]} srvs\n # @return {saklient.cloud.resources.lbvirtualip.LbVirtualIp}", "metadata": "root.LbVirtualIp", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def get_virtual_ip_address(self):\n return self._virtual_ip_address", "metadata": "root.LbVirtualIp.get_virtual_ip_address", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 18 }, { "content": " def set_virtual_ip_address(self, v):\n Util.validate_type(v, \"str\")\n self._virtual_ip_address = v\n return self._virtual_ip_address", "metadata": "root.LbVirtualIp.set_virtual_ip_address", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 23 }, { "content": " def get_port(self):\n return self._port", "metadata": "root.LbVirtualIp.get_port", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 34 }, { "content": " def set_port(self, v):\n Util.validate_type(v, \"int\")\n self._port = v\n return self._port", "metadata": "root.LbVirtualIp.set_port", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 39 }, { "content": " def get_delay_loop(self):\n return self._delay_loop", "metadata": "root.LbVirtualIp.get_delay_loop", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 50 }, { "content": " def set_delay_loop(self, v):\n Util.validate_type(v, \"int\")\n self._delay_loop = v\n return self._delay_loop", "metadata": "root.LbVirtualIp.set_delay_loop", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 55 }, { "content": " def get_servers(self):\n return self._servers", "metadata": "root.LbVirtualIp.get_servers", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 66 }, { "content": " def __init__(self, obj=None):\n if obj is None:\n obj = {}\n vip = Util.get_by_path_any([obj], [\"VirtualIPAddress\", \"virtualIpAddress\", \"virtual_ip_address\", \"vip\"])\n self._virtual_ip_address = vip\n port = Util.get_by_path_any([obj], [\"Port\", \"port\"])\n self._port = None\n if port is not None:\n self._port = int(port)\n if self._port == 0:\n self._port = None\n delayLoop = Util.get_by_path_any([obj], [\"DelayLoop\", \"delayLoop\", \"delay_loop\", \"delay\"])\n self._delay_loop = None\n if delayLoop is not None:\n self._delay_loop = int(delayLoop)\n if self._delay_loop == 0:\n self._delay_loop = None\n self._servers = []\n serversDyn = Util.get_by_path_any([obj], [\"Servers\", \"servers\"])\n if serversDyn is not None:\n servers = serversDyn\n for server in servers:\n self._servers.append(LbServer(server))", "metadata": "root.LbVirtualIp.__init__", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 74 }, { "content": " def add_server(self, settings=None):\n ret = LbServer(settings)\n self._servers.append(ret)\n return ret", "metadata": "root.LbVirtualIp.add_server", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 102 }, { "content": " def to_raw_settings(self):\n servers = []\n for server in self._servers:\n servers.append(server.to_raw_settings())\n return {\n 'VirtualIPAddress': self._virtual_ip_address,\n 'Port': self._port,\n 'DelayLoop': self._delay_loop,\n 'Servers': servers\n }", "metadata": "root.LbVirtualIp.to_raw_settings", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 108 }, { "content": " def get_server_by_address(self, address):\n Util.validate_type(address, \"str\")\n for srv in self._servers:\n if srv.ip_address == address:\n return srv\n return None", "metadata": "root.LbVirtualIp.get_server_by_address", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 123 }, { "content": " def remove_server_by_address(self, address):\n Util.validate_type(address, \"str\")\n servers = []\n for srv in self._servers:\n if srv.ip_address != address:\n servers.append(srv)\n self._servers = servers\n return self", "metadata": "root.LbVirtualIp.remove_server_by_address", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 134 }, { "content": " def update_status(self, srvs):\n Util.validate_type(srvs, \"list\")\n for srvDyn in srvs:\n ip = (srvDyn[\"IPAddress\"] if \"IPAddress\" in srvDyn else None)\n srv = self.get_server_by_address(ip)\n if srv is None:\n next\n srv.update_status(srvDyn)\n return self", "metadata": "root.LbVirtualIp.update_status", "header": "['class', 'LbVirtualIp', '(', 'object', ')', ':', '___NEWLINE___', '## ロードバランサの仮想IPアドレス設定。', '___NL___', '___NL___', '# (instance field) _virtual_ip_address', '___NL___', '___NL___', '## @return {str}', '___NL___', '___EOS___']", "index": 146 } ]

[ { "span": "import saklient", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 15 } ]

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[ { "content": "def test_mf2005_p07():\n pth = os.path.join(pth2005, 'P07')\n namfile = 'p7mf2005.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'p7mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2005_p07", "header": "['module', '___EOS___']", "index": 9 }, { "content": "def test_mf2000_p07():\n pth = os.path.join(pth2000, 'P07')\n namfile = 'p7mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'p7mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_p07", "header": "['module', '___EOS___']", "index": 19 }, { "content": "def test_mf2000_HSSTest():\n pth = os.path.join(pth2000, 'HSSTest')\n namfile = 'hsstest_mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'hsstest_mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_HSSTest", "header": "['module', '___EOS___']", "index": 29 }, { "content": "def test_mf2000_MultiDiffusion():\n pth = os.path.join(pth2000, 'MultiDiffusion')\n namfile = 'p7mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'P7MT.NAM'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_MultiDiffusion", "header": "['module', '___EOS___']", "index": 52 }, { "content": "def test_mf2000_P07():\n pth = os.path.join(pth2000, 'P07')\n namfile = 'p7mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'p7mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_P07", "header": "['module', '___EOS___']", "index": 62 }, { "content": "def test_mf2000_reinject():\n pth = os.path.join(pth2000, 'reinject')\n namfile = 'P3MF2K.NAM'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'P3MT.NAM'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_reinject", "header": "['module', '___EOS___']", "index": 72 }, { "content": "def test_mf2000_SState():\n pth = os.path.join(pth2000, 'SState')\n namfile = 'SState_mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'SState_mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_SState", "header": "['module', '___EOS___']", "index": 82 }, { "content": "def test_mf2000_tob():\n pth = os.path.join(pth2000, 'tob')\n namfile = 'p7mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'p7mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_tob", "header": "['module', '___EOS___']", "index": 92 }, { "content": "def test_mf2000_zeroth():\n pth = os.path.join(pth2000, 'zeroth')\n namfile = 'z0mf2k.nam'\n mf = flopy.modflow.Modflow.load(namfile, model_ws=pth, verbose=True)\n namfile = 'z0mt.nam'\n mt = flopy.mt3d.mt.Mt3dms.load(namfile, model_ws=pth, verbose=True)\n mt.model_ws = newpth\n mt.write_input()\n return", "metadata": "root.test_mf2000_zeroth", "header": "['module', '___EOS___']", "index": 102 } ]

[ { "span": "mf ", "start_line": 12, "start_column": 4, "end_line": 12, "end_column": 6 }, { "span": "mf ", "start_line": 22, "start_column": 4, "end_line": 22, "end_column": 6 }, { "span": "mf ", "start_line": 32, "start_column": 4, "end_line": 32, "end_column": 6 }, { "span": "mf ", "start_line": 55, "start_column": 4, "end_line": 55, "end_column": 6 }, { "span": "mf ", "start_line": 65, "start_column": 4, "end_line": 65, "end_column": 6 }, { "span": "mf ", "start_line": 75, "start_column": 4, "end_line": 75, "end_column": 6 }, { "span": "mf ", "start_line": 85, "start_column": 4, "end_line": 85, "end_column": 6 }, { "span": "mf ", "start_line": 95, "start_column": 4, "end_line": 95, "end_column": 6 }, { "span": "mf ", "start_line": 105, "start_column": 4, "end_line": 105, "end_column": 6 } ]

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[ { "content": "def main():\n '''\n SCP transfer cisco_logging.txt to network device\n\n Use ssh_conn as ssh channel into network device\n scp_conn must be closed after file transfer\n '''\n ssh_conn = ConnectHandler(**cisco_881)\n scp_conn = SCPConn(ssh_conn)\n s_file = 'cisco_logging.txt'\n d_file = 'cisco_logging.txt'\n\n print \"\\n\\n\"\n\n scp_conn.scp_transfer_file(s_file, d_file)\n scp_conn.close()\n\n output = ssh_conn.send_command(\"show flash: | inc cisco_logging\")\n print \">> \" + output + '\\n'\n\n # Disable file copy confirmation\n output = ssh_conn.send_config_set([\"file prompt quiet\"])\n\n # Execute config merge\n print \"Performing config merge\\n\"\n output = ssh_conn.send_command(\"copy flash:cisco_logging.txt running-config\")\n\n # Verify change\n print \"Verifying logging buffer change\"\n output = ssh_conn.send_command(\"show run | inc logging buffer\")\n print \">> \" + output + '\\n'\n\n # Restore copy confirmation\n output = ssh_conn.send_config_set([\"file prompt alert\"])", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 10 } ]

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[ { "content": "class Decimal(object):\n \"\"\"Floating point class for decimal arithmetic.\"\"\"\n\n __slots__ = ('_exp','_int','_sign', '_is_special')\n # Generally, the value of the Decimal instance is given by\n # (-1)**_sign * _int * 10**_exp\n # Special values are signified by _is_special == True\n\n # We're immutable, so use __new__ not __init__\n\n # @classmethod, but @decorator is not valid Python 2.3 syntax, so\n # don't use it (see notes on Py2.3 compatibility at top of file)\n from_float = classmethod(from_float)\n\n\n\n\n\n\n\n # Note: The Decimal standard doesn't cover rich comparisons for\n # Decimals. In particular, the specification is silent on the\n # subject of what should happen for a comparison involving a NaN.\n # We take the following approach:\n #\n # == comparisons involving a quiet NaN always return False\n # != comparisons involving a quiet NaN always return True\n # == or != comparisons involving a signaling NaN signal\n # InvalidOperation, and return False or True as above if the\n # InvalidOperation is not trapped.\n # <, >, <= and >= comparisons involving a (quiet or signaling)\n # NaN signal InvalidOperation, and return False if the\n # InvalidOperation is not trapped.\n #\n # This behavior is designed to conform as closely as possible to\n # that specified by IEEE 754.\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n __radd__ = __add__\n\n\n\n __rmul__ = __mul__\n\n\n\n\n __div__ = __truediv__\n __rdiv__ = __rtruediv__\n\n\n\n\n\n\n\n\n\n\n __trunc__ = __int__\n\n real = property(real)\n\n imag = property(imag)\n\n\n\n\n\n\n _pick_rounding_function = {}\n\n # for each of the rounding functions below:\n # self is a finite, nonzero Decimal\n # prec is an integer satisfying 0 <= prec < len(self._int)\n #\n # each function returns either -1, 0, or 1, as follows:\n # 1 indicates that self should be rounded up (away from zero)\n # 0 indicates that self should be truncated, and that all the\n # digits to be truncated are zeros (so the value is unchanged)\n # -1 indicates that there are nonzero digits to be truncated\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n # the method name changed, but we provide also the old one, for compatibility\n to_integral = to_integral_value\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n # Support for pickling, copy, and deepcopy\n\n\n\n # PEP 3101 support. the _localeconv keyword argument should be\n # considered private: it's provided for ease of testing only.\n\n # support for Jython __tojava__:", "metadata": "root.Decimal", "header": "['module', '___EOS___']", "index": 513 }, { "content": " def __new__(cls, value=\"0\", context=None):\n \"\"\"Create a decimal point instance.\n\n >>> Decimal('3.14') # string input\n Decimal('3.14')\n >>> Decimal((0, (3, 1, 4), -2)) # tuple (sign, digit_tuple, exponent)\n Decimal('3.14')\n >>> Decimal(314) # int or long\n Decimal('314')\n >>> Decimal(Decimal(314)) # another decimal instance\n Decimal('314')\n >>> Decimal(' 3.14 \\\\n') # leading and trailing whitespace okay\n Decimal('3.14')\n \"\"\"\n\n # Note that the coefficient, self._int, is actually stored as\n # a string rather than as a tuple of digits. This speeds up\n # the \"digits to integer\" and \"integer to digits\" conversions\n # that are used in almost every arithmetic operation on\n # Decimals. This is an internal detail: the as_tuple function\n # and the Decimal constructor still deal with tuples of\n # digits.\n\n self = object.__new__(cls)\n\n # From a string\n # REs insist on real strings, so we can too.\n if isinstance(value, basestring):\n m = _parser(value.strip())\n if m is None:\n if context is None:\n context = getcontext()\n return context._raise_error(ConversionSyntax,\n \"Invalid literal for Decimal: %r\" % value)\n\n if m.group('sign') == \"-\":\n self._sign = 1\n else:\n self._sign = 0\n intpart = m.group('int')\n if intpart is not None:\n # finite number\n fracpart = m.group('frac') or ''\n exp = int(m.group('exp') or '0')\n self._int = str(int(intpart+fracpart))\n self._exp = exp - len(fracpart)\n self._is_special = False\n else:\n diag = m.group('diag')\n if diag is not None:\n # NaN\n self._int = str(int(diag or '0')).lstrip('0')\n if m.group('signal'):\n self._exp = 'N'\n else:\n self._exp = 'n'\n else:\n # infinity\n self._int = '0'\n self._exp = 'F'\n self._is_special = True\n return self\n\n # From an integer\n if isinstance(value, (int,long)):\n if value >= 0:\n self._sign = 0\n else:\n self._sign = 1\n self._exp = 0\n self._int = str(abs(value))\n self._is_special = False\n return self\n\n # From another decimal\n if isinstance(value, Decimal):\n self._exp = value._exp\n self._sign = value._sign\n self._int = value._int\n self._is_special = value._is_special\n return self\n\n # From an internal working value\n if isinstance(value, _WorkRep):\n self._sign = value.sign\n self._int = str(value.int)\n self._exp = int(value.exp)\n self._is_special = False\n return self\n\n # tuple/list conversion (possibly from as_tuple())\n if isinstance(value, (list,tuple)):\n if len(value) != 3:\n raise ValueError('Invalid tuple size in creation of Decimal '\n 'from list or tuple. The list or tuple '\n 'should have exactly three elements.')\n # process sign. The isinstance test rejects floats\n if not (isinstance(value[0], (int, long)) and value[0] in (0,1)):\n raise ValueError(\"Invalid sign. The first value in the tuple \"\n \"should be an integer; either 0 for a \"\n \"positive number or 1 for a negative number.\")\n self._sign = value[0]\n if value[2] == 'F':\n # infinity: value[1] is ignored\n self._int = '0'\n self._exp = value[2]\n self._is_special = True\n else:\n # process and validate the digits in value[1]\n digits = []\n for digit in value[1]:\n if isinstance(digit, (int, long)) and 0 <= digit <= 9:\n # skip leading zeros\n if digits or digit != 0:\n digits.append(digit)\n else:\n raise ValueError(\"The second value in the tuple must \"\n \"be composed of integers in the range \"\n \"0 through 9.\")\n if value[2] in ('n', 'N'):\n # NaN: digits form the diagnostic\n self._int = ''.join(map(str, digits))\n self._exp = value[2]\n self._is_special = True\n elif isinstance(value[2], (int, long)):\n # finite number: digits give the coefficient\n self._int = ''.join(map(str, digits or [0]))\n self._exp = value[2]\n self._is_special = False\n else:\n raise ValueError(\"The third value in the tuple must \"\n \"be an integer, or one of the \"\n \"strings 'F', 'n', 'N'.\")\n return self\n\n if isinstance(value, float):\n value = Decimal.from_float(value)\n self._exp = value._exp\n self._sign = value._sign\n self._int = value._int\n self._is_special = value._is_special\n return self\n\n raise TypeError(\"Cannot convert %r to Decimal\" % value)", "metadata": "root.Decimal.__new__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 522 }, { "content": " def from_float(cls, f):\n \"\"\"Converts a float to a decimal number, exactly.\n\n Note that Decimal.from_float(0.1) is not the same as Decimal('0.1').\n Since 0.1 is not exactly representable in binary floating point, the\n value is stored as the nearest representable value which is\n 0x1.999999999999ap-4. The exact equivalent of the value in decimal\n is 0.1000000000000000055511151231257827021181583404541015625.\n\n >>> Decimal.from_float(0.1)\n Decimal('0.1000000000000000055511151231257827021181583404541015625')\n >>> Decimal.from_float(float('nan'))\n Decimal('NaN')\n >>> Decimal.from_float(float('inf'))\n Decimal('Infinity')\n >>> Decimal.from_float(-float('inf'))\n Decimal('-Infinity')\n >>> Decimal.from_float(-0.0)\n Decimal('-0')\n\n \"\"\"\n if isinstance(f, (int, long)): # handle integer inputs\n return cls(f)\n if _math.isinf(f) or _math.isnan(f): # raises TypeError if not a float\n return cls(repr(f))\n if _math.copysign(1.0, f) == 1.0:\n sign = 0\n else:\n sign = 1\n n, d = abs(f).as_integer_ratio()\n k = d.bit_length() - 1\n result = _dec_from_triple(sign, str(n*5**k), -k)\n if cls is Decimal:\n return result\n else:\n return cls(result)", "metadata": "root.Decimal.from_float", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 669 }, { "content": " def _isnan(self):\n \"\"\"Returns whether the number is not actually one.\n\n 0 if a number\n 1 if NaN\n 2 if sNaN\n \"\"\"\n if self._is_special:\n exp = self._exp\n if exp == 'n':\n return 1\n elif exp == 'N':\n return 2\n return 0", "metadata": "root.Decimal._isnan", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 707 }, { "content": " def _isinfinity(self):\n \"\"\"Returns whether the number is infinite\n\n 0 if finite or not a number\n 1 if +INF\n -1 if -INF\n \"\"\"\n if self._exp == 'F':\n if self._sign:\n return -1\n return 1\n return 0", "metadata": "root.Decimal._isinfinity", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 722 }, { "content": " def _check_nans(self, other=None, context=None):\n \"\"\"Returns whether the number is not actually one.\n\n if self, other are sNaN, signal\n if self, other are NaN return nan\n return 0\n\n Done before operations.\n \"\"\"\n\n self_is_nan = self._isnan()\n if other is None:\n other_is_nan = False\n else:\n other_is_nan = other._isnan()\n\n if self_is_nan or other_is_nan:\n if context is None:\n context = getcontext()\n\n if self_is_nan == 2:\n return context._raise_error(InvalidOperation, 'sNaN',\n self)\n if other_is_nan == 2:\n return context._raise_error(InvalidOperation, 'sNaN',\n other)\n if self_is_nan:\n return self._fix_nan(context)\n\n return other._fix_nan(context)\n return 0", "metadata": "root.Decimal._check_nans", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 735 }, { "content": " def _compare_check_nans(self, other, context):\n \"\"\"Version of _check_nans used for the signaling comparisons\n compare_signal, __le__, __lt__, __ge__, __gt__.\n\n Signal InvalidOperation if either self or other is a (quiet\n or signaling) NaN. Signaling NaNs take precedence over quiet\n NaNs.\n\n Return 0 if neither operand is a NaN.\n\n \"\"\"\n if context is None:\n context = getcontext()\n\n if self._is_special or other._is_special:\n if self.is_snan():\n return context._raise_error(InvalidOperation,\n 'comparison involving sNaN',\n self)\n elif other.is_snan():\n return context._raise_error(InvalidOperation,\n 'comparison involving sNaN',\n other)\n elif self.is_qnan():\n return context._raise_error(InvalidOperation,\n 'comparison involving NaN',\n self)\n elif other.is_qnan():\n return context._raise_error(InvalidOperation,\n 'comparison involving NaN',\n other)\n return 0", "metadata": "root.Decimal._compare_check_nans", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 767 }, { "content": " def __nonzero__(self):\n \"\"\"Return True if self is nonzero; otherwise return False.\n\n NaNs and infinities are considered nonzero.\n \"\"\"\n return self._is_special or self._int != '0'", "metadata": "root.Decimal.__nonzero__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 800 }, { "content": " def _cmp(self, other):\n \"\"\"Compare the two non-NaN decimal instances self and other.\n\n Returns -1 if self < other, 0 if self == other and 1\n if self > other. This routine is for internal use only.\"\"\"\n\n if self._is_special or other._is_special:\n self_inf = self._isinfinity()\n other_inf = other._isinfinity()\n if self_inf == other_inf:\n return 0\n elif self_inf < other_inf:\n return -1\n else:\n return 1\n\n # check for zeros; Decimal('0') == Decimal('-0')\n if not self:\n if not other:\n return 0\n else:\n return -((-1)**other._sign)\n if not other:\n return (-1)**self._sign\n\n # If different signs, neg one is less\n if other._sign < self._sign:\n return -1\n if self._sign < other._sign:\n return 1\n\n self_adjusted = self.adjusted()\n other_adjusted = other.adjusted()\n if self_adjusted == other_adjusted:\n self_padded = self._int + '0'*(self._exp - other._exp)\n other_padded = other._int + '0'*(other._exp - self._exp)\n if self_padded == other_padded:\n return 0\n elif self_padded < other_padded:\n return -(-1)**self._sign\n else:\n return (-1)**self._sign\n elif self_adjusted > other_adjusted:\n return (-1)**self._sign\n else: # self_adjusted < other_adjusted\n return -((-1)**self._sign)", "metadata": "root.Decimal._cmp", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 807 }, { "content": " def __eq__(self, other, context=None):\n other = _convert_other(other, allow_float=True)\n if other is NotImplemented:\n return other\n if self._check_nans(other, context):\n return False\n return self._cmp(other) == 0", "metadata": "root.Decimal.__eq__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 871 }, { "content": " def __ne__(self, other, context=None):\n other = _convert_other(other, allow_float=True)\n if other is NotImplemented:\n return other\n if self._check_nans(other, context):\n return True\n return self._cmp(other) != 0", "metadata": "root.Decimal.__ne__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 879 }, { "content": " def __lt__(self, other, context=None):\n other = _convert_other(other, allow_float=True)\n if other is NotImplemented:\n return other\n ans = self._compare_check_nans(other, context)\n if ans:\n return False\n return self._cmp(other) < 0", "metadata": "root.Decimal.__lt__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 887 }, { "content": " def __le__(self, other, context=None):\n other = _convert_other(other, allow_float=True)\n if other is NotImplemented:\n return other\n ans = self._compare_check_nans(other, context)\n if ans:\n return False\n return self._cmp(other) <= 0", "metadata": "root.Decimal.__le__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 896 }, { "content": " def __gt__(self, other, context=None):\n other = _convert_other(other, allow_float=True)\n if other is NotImplemented:\n return other\n ans = self._compare_check_nans(other, context)\n if ans:\n return False\n return self._cmp(other) > 0", "metadata": "root.Decimal.__gt__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 905 }, { "content": " def __ge__(self, other, context=None):\n other = _convert_other(other, allow_float=True)\n if other is NotImplemented:\n return other\n ans = self._compare_check_nans(other, context)\n if ans:\n return False\n return self._cmp(other) >= 0", "metadata": "root.Decimal.__ge__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 914 }, { "content": " def compare(self, other, context=None):\n \"\"\"Compares one to another.\n\n -1 => a < b\n 0 => a = b\n 1 => a > b\n NaN => one is NaN\n Like __cmp__, but returns Decimal instances.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n\n # Compare(NaN, NaN) = NaN\n if (self._is_special or other and other._is_special):\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n return Decimal(self._cmp(other))", "metadata": "root.Decimal.compare", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 923 }, { "content": " def __hash__(self):\n \"\"\"x.__hash__() <==> hash(x)\"\"\"\n # Decimal integers must hash the same as the ints\n #\n # The hash of a nonspecial noninteger Decimal must depend only\n # on the value of that Decimal, and not on its representation.\n # For example: hash(Decimal('100E-1')) == hash(Decimal('10')).\n\n # Equality comparisons involving signaling nans can raise an\n # exception; since equality checks are implicitly and\n # unpredictably used when checking set and dict membership, we\n # prevent signaling nans from being used as set elements or\n # dict keys by making __hash__ raise an exception.\n if self._is_special:\n if self.is_snan():\n raise TypeError('Cannot hash a signaling NaN value.')\n elif self.is_nan():\n # 0 to match hash(float('nan'))\n return 0\n else:\n # values chosen to match hash(float('inf')) and\n # hash(float('-inf')).\n if self._sign:\n return -271828\n else:\n return 314159\n\n # In Python 2.7, we're allowing comparisons (but not\n # arithmetic operations) between floats and Decimals; so if\n # a Decimal instance is exactly representable as a float then\n # its hash should match that of the float.\n self_as_float = float(self)\n if Decimal.from_float(self_as_float) == self:\n return hash(self_as_float)\n\n if self._isinteger():\n # We do this differently in Jython due to the different maxint.\n return hash(long(self.to_integral_value()))\n # The value of a nonzero nonspecial Decimal instance is\n # faithfully represented by the triple consisting of its sign,\n # its adjusted exponent, and its coefficient with trailing\n # zeros removed.\n return hash((self._sign,\n self._exp+len(self._int),\n self._int.rstrip('0')))", "metadata": "root.Decimal.__hash__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 942 }, { "content": " def as_tuple(self):\n \"\"\"Represents the number as a triple tuple.\n\n To show the internals exactly as they are.\n \"\"\"\n return DecimalTuple(self._sign, tuple(map(int, self._int)), self._exp)", "metadata": "root.Decimal.as_tuple", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 988 }, { "content": " def __repr__(self):\n \"\"\"Represents the number as an instance of Decimal.\"\"\"\n # Invariant: eval(repr(d)) == d\n return \"Decimal('%s')\" % str(self)", "metadata": "root.Decimal.__repr__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 995 }, { "content": " def __str__(self, eng=False, context=None):\n \"\"\"Return string representation of the number in scientific notation.\n\n Captures all of the information in the underlying representation.\n \"\"\"\n\n sign = ['', '-'][self._sign]\n if self._is_special:\n if self._exp == 'F':\n return sign + 'Infinity'\n elif self._exp == 'n':\n return sign + 'NaN' + self._int\n else: # self._exp == 'N'\n return sign + 'sNaN' + self._int\n\n # number of digits of self._int to left of decimal point\n leftdigits = self._exp + len(self._int)\n\n # dotplace is number of digits of self._int to the left of the\n # decimal point in the mantissa of the output string (that is,\n # after adjusting the exponent)\n if self._exp <= 0 and leftdigits > -6:\n # no exponent required\n dotplace = leftdigits\n elif not eng:\n # usual scientific notation: 1 digit on left of the point\n dotplace = 1\n elif self._int == '0':\n # engineering notation, zero\n dotplace = (leftdigits + 1) % 3 - 1\n else:\n # engineering notation, nonzero\n dotplace = (leftdigits - 1) % 3 + 1\n\n if dotplace <= 0:\n intpart = '0'\n fracpart = '.' + '0'*(-dotplace) + self._int\n elif dotplace >= len(self._int):\n intpart = self._int+'0'*(dotplace-len(self._int))\n fracpart = ''\n else:\n intpart = self._int[:dotplace]\n fracpart = '.' + self._int[dotplace:]\n if leftdigits == dotplace:\n exp = ''\n else:\n if context is None:\n context = getcontext()\n exp = ['e', 'E'][context.capitals] + \"%+d\" % (leftdigits-dotplace)\n\n return sign + intpart + fracpart + exp", "metadata": "root.Decimal.__str__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1000 }, { "content": " def to_eng_string(self, context=None):\n \"\"\"Convert to engineering-type string.\n\n Engineering notation has an exponent which is a multiple of 3, so there\n are up to 3 digits left of the decimal place.\n\n Same rules for when in exponential and when as a value as in __str__.\n \"\"\"\n return self.__str__(eng=True, context=context)", "metadata": "root.Decimal.to_eng_string", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1052 }, { "content": " def __neg__(self, context=None):\n \"\"\"Returns a copy with the sign switched.\n\n Rounds, if it has reason.\n \"\"\"\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if not self:\n # -Decimal('0') is Decimal('0'), not Decimal('-0')\n ans = self.copy_abs()\n else:\n ans = self.copy_negate()\n\n if context is None:\n context = getcontext()\n return ans._fix(context)", "metadata": "root.Decimal.__neg__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1062 }, { "content": " def __pos__(self, context=None):\n \"\"\"Returns a copy, unless it is a sNaN.\n\n Rounds the number (if more then precision digits)\n \"\"\"\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if not self:\n # + (-0) = 0\n ans = self.copy_abs()\n else:\n ans = Decimal(self)\n\n if context is None:\n context = getcontext()\n return ans._fix(context)", "metadata": "root.Decimal.__pos__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1082 }, { "content": " def __abs__(self, round=True, context=None):\n \"\"\"Returns the absolute value of self.\n\n If the keyword argument 'round' is false, do not round. The\n expression self.__abs__(round=False) is equivalent to\n self.copy_abs().\n \"\"\"\n if not round:\n return self.copy_abs()\n\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if self._sign:\n ans = self.__neg__(context=context)\n else:\n ans = self.__pos__(context=context)\n\n return ans", "metadata": "root.Decimal.__abs__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1102 }, { "content": " def __add__(self, other, context=None):\n \"\"\"Returns self + other.\n\n -INF + INF (or the reverse) cause InvalidOperation errors.\n \"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if context is None:\n context = getcontext()\n\n if self._is_special or other._is_special:\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if self._isinfinity():\n # If both INF, same sign => same as both, opposite => error.\n if self._sign != other._sign and other._isinfinity():\n return context._raise_error(InvalidOperation, '-INF + INF')\n return Decimal(self)\n if other._isinfinity():\n return Decimal(other) # Can't both be infinity here\n\n exp = min(self._exp, other._exp)\n negativezero = 0\n if context.rounding == ROUND_FLOOR and self._sign != other._sign:\n # If the answer is 0, the sign should be negative, in this case.\n negativezero = 1\n\n if not self and not other:\n sign = min(self._sign, other._sign)\n if negativezero:\n sign = 1\n ans = _dec_from_triple(sign, '0', exp)\n ans = ans._fix(context)\n return ans\n if not self:\n exp = max(exp, other._exp - context.prec-1)\n ans = other._rescale(exp, context.rounding)\n ans = ans._fix(context)\n return ans\n if not other:\n exp = max(exp, self._exp - context.prec-1)\n ans = self._rescale(exp, context.rounding)\n ans = ans._fix(context)\n return ans\n\n op1 = _WorkRep(self)\n op2 = _WorkRep(other)\n op1, op2 = _normalize(op1, op2, context.prec)\n\n result = _WorkRep()\n if op1.sign != op2.sign:\n # Equal and opposite\n if op1.int == op2.int:\n ans = _dec_from_triple(negativezero, '0', exp)\n ans = ans._fix(context)\n return ans\n if op1.int < op2.int:\n op1, op2 = op2, op1\n # OK, now abs(op1) > abs(op2)\n if op1.sign == 1:\n result.sign = 1\n op1.sign, op2.sign = op2.sign, op1.sign\n else:\n result.sign = 0\n # So we know the sign, and op1 > 0.\n elif op1.sign == 1:\n result.sign = 1\n op1.sign, op2.sign = (0, 0)\n else:\n result.sign = 0\n # Now, op1 > abs(op2) > 0\n\n if op2.sign == 0:\n result.int = op1.int + op2.int\n else:\n result.int = op1.int - op2.int\n\n result.exp = op1.exp\n ans = Decimal(result)\n ans = ans._fix(context)\n return ans", "metadata": "root.Decimal.__add__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1124 }, { "content": " def __sub__(self, other, context=None):\n \"\"\"Return self - other\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if self._is_special or other._is_special:\n ans = self._check_nans(other, context=context)\n if ans:\n return ans\n\n # self - other is computed as self + other.copy_negate()\n return self.__add__(other.copy_negate(), context=context)", "metadata": "root.Decimal.__sub__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1212 }, { "content": " def __rsub__(self, other, context=None):\n \"\"\"Return other - self\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n return other.__sub__(self, context=context)", "metadata": "root.Decimal.__rsub__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1226 }, { "content": " def __mul__(self, other, context=None):\n \"\"\"Return self * other.\n\n (+-) INF * 0 (or its reverse) raise InvalidOperation.\n \"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if context is None:\n context = getcontext()\n\n resultsign = self._sign ^ other._sign\n\n if self._is_special or other._is_special:\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if self._isinfinity():\n if not other:\n return context._raise_error(InvalidOperation, '(+-)INF * 0')\n return _SignedInfinity[resultsign]\n\n if other._isinfinity():\n if not self:\n return context._raise_error(InvalidOperation, '0 * (+-)INF')\n return _SignedInfinity[resultsign]\n\n resultexp = self._exp + other._exp\n\n # Special case for multiplying by zero\n if not self or not other:\n ans = _dec_from_triple(resultsign, '0', resultexp)\n # Fixing in case the exponent is out of bounds\n ans = ans._fix(context)\n return ans\n\n # Special case for multiplying by power of 10\n if self._int == '1':\n ans = _dec_from_triple(resultsign, other._int, resultexp)\n ans = ans._fix(context)\n return ans\n if other._int == '1':\n ans = _dec_from_triple(resultsign, self._int, resultexp)\n ans = ans._fix(context)\n return ans\n\n op1 = _WorkRep(self)\n op2 = _WorkRep(other)\n\n ans = _dec_from_triple(resultsign, str(op1.int * op2.int), resultexp)\n ans = ans._fix(context)\n\n return ans", "metadata": "root.Decimal.__mul__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1234 }, { "content": " def __truediv__(self, other, context=None):\n \"\"\"Return self / other.\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return NotImplemented\n\n if context is None:\n context = getcontext()\n\n sign = self._sign ^ other._sign\n\n if self._is_special or other._is_special:\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if self._isinfinity() and other._isinfinity():\n return context._raise_error(InvalidOperation, '(+-)INF/(+-)INF')\n\n if self._isinfinity():\n return _SignedInfinity[sign]\n\n if other._isinfinity():\n context._raise_error(Clamped, 'Division by infinity')\n return _dec_from_triple(sign, '0', context.Etiny())\n\n # Special cases for zeroes\n if not other:\n if not self:\n return context._raise_error(DivisionUndefined, '0 / 0')\n return context._raise_error(DivisionByZero, 'x / 0', sign)\n\n if not self:\n exp = self._exp - other._exp\n coeff = 0\n else:\n # OK, so neither = 0, INF or NaN\n shift = len(other._int) - len(self._int) + context.prec + 1\n exp = self._exp - other._exp - shift\n op1 = _WorkRep(self)\n op2 = _WorkRep(other)\n if shift >= 0:\n coeff, remainder = divmod(op1.int * 10**shift, op2.int)\n else:\n coeff, remainder = divmod(op1.int, op2.int * 10**-shift)\n if remainder:\n # result is not exact; adjust to ensure correct rounding\n if coeff % 5 == 0:\n coeff += 1\n else:\n # result is exact; get as close to ideal exponent as possible\n ideal_exp = self._exp - other._exp\n while exp < ideal_exp and coeff % 10 == 0:\n coeff //= 10\n exp += 1\n\n ans = _dec_from_triple(sign, str(coeff), exp)\n return ans._fix(context)", "metadata": "root.Decimal.__truediv__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1291 }, { "content": " def _divide(self, other, context):\n \"\"\"Return (self // other, self % other), to context.prec precision.\n\n Assumes that neither self nor other is a NaN, that self is not\n infinite and that other is nonzero.\n \"\"\"\n sign = self._sign ^ other._sign\n if other._isinfinity():\n ideal_exp = self._exp\n else:\n ideal_exp = min(self._exp, other._exp)\n\n expdiff = self.adjusted() - other.adjusted()\n if not self or other._isinfinity() or expdiff <= -2:\n return (_dec_from_triple(sign, '0', 0),\n self._rescale(ideal_exp, context.rounding))\n if expdiff <= context.prec:\n op1 = _WorkRep(self)\n op2 = _WorkRep(other)\n if op1.exp >= op2.exp:\n op1.int *= 10**(op1.exp - op2.exp)\n else:\n op2.int *= 10**(op2.exp - op1.exp)\n q, r = divmod(op1.int, op2.int)\n if q < 10**context.prec:\n return (_dec_from_triple(sign, str(q), 0),\n _dec_from_triple(self._sign, str(r), ideal_exp))\n\n # Here the quotient is too large to be representable\n ans = context._raise_error(DivisionImpossible,\n 'quotient too large in //, % or divmod')\n return ans, ans", "metadata": "root.Decimal._divide", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1350 }, { "content": " def __rtruediv__(self, other, context=None):\n \"\"\"Swaps self/other and returns __truediv__.\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n return other.__truediv__(self, context=context)", "metadata": "root.Decimal.__rtruediv__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1383 }, { "content": " def __divmod__(self, other, context=None):\n \"\"\"\n Return (self // other, self % other)\n \"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if context is None:\n context = getcontext()\n\n ans = self._check_nans(other, context)\n if ans:\n return (ans, ans)\n\n sign = self._sign ^ other._sign\n if self._isinfinity():\n if other._isinfinity():\n ans = context._raise_error(InvalidOperation, 'divmod(INF, INF)')\n return ans, ans\n else:\n return (_SignedInfinity[sign],\n context._raise_error(InvalidOperation, 'INF % x'))\n\n if not other:\n if not self:\n ans = context._raise_error(DivisionUndefined, 'divmod(0, 0)')\n return ans, ans\n else:\n return (context._raise_error(DivisionByZero, 'x // 0', sign),\n context._raise_error(InvalidOperation, 'x % 0'))\n\n quotient, remainder = self._divide(other, context)\n remainder = remainder._fix(context)\n return quotient, remainder", "metadata": "root.Decimal.__divmod__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1393 }, { "content": " def __rdivmod__(self, other, context=None):\n \"\"\"Swaps self/other and returns __divmod__.\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n return other.__divmod__(self, context=context)", "metadata": "root.Decimal.__rdivmod__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1429 }, { "content": " def __mod__(self, other, context=None):\n \"\"\"\n self % other\n \"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if context is None:\n context = getcontext()\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if self._isinfinity():\n return context._raise_error(InvalidOperation, 'INF % x')\n elif not other:\n if self:\n return context._raise_error(InvalidOperation, 'x % 0')\n else:\n return context._raise_error(DivisionUndefined, '0 % 0')\n\n remainder = self._divide(other, context)[1]\n remainder = remainder._fix(context)\n return remainder", "metadata": "root.Decimal.__mod__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1436 }, { "content": " def __rmod__(self, other, context=None):\n \"\"\"Swaps self/other and returns __mod__.\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n return other.__mod__(self, context=context)", "metadata": "root.Decimal.__rmod__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1463 }, { "content": " def remainder_near(self, other, context=None):\n \"\"\"\n Remainder nearest to 0- abs(remainder-near) <= other/2\n \"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n # self == +/-infinity -> InvalidOperation\n if self._isinfinity():\n return context._raise_error(InvalidOperation,\n 'remainder_near(infinity, x)')\n\n # other == 0 -> either InvalidOperation or DivisionUndefined\n if not other:\n if self:\n return context._raise_error(InvalidOperation,\n 'remainder_near(x, 0)')\n else:\n return context._raise_error(DivisionUndefined,\n 'remainder_near(0, 0)')\n\n # other = +/-infinity -> remainder = self\n if other._isinfinity():\n ans = Decimal(self)\n return ans._fix(context)\n\n # self = 0 -> remainder = self, with ideal exponent\n ideal_exponent = min(self._exp, other._exp)\n if not self:\n ans = _dec_from_triple(self._sign, '0', ideal_exponent)\n return ans._fix(context)\n\n # catch most cases of large or small quotient\n expdiff = self.adjusted() - other.adjusted()\n if expdiff >= context.prec + 1:\n # expdiff >= prec+1 => abs(self/other) > 10**prec\n return context._raise_error(DivisionImpossible)\n if expdiff <= -2:\n # expdiff <= -2 => abs(self/other) < 0.1\n ans = self._rescale(ideal_exponent, context.rounding)\n return ans._fix(context)\n\n # adjust both arguments to have the same exponent, then divide\n op1 = _WorkRep(self)\n op2 = _WorkRep(other)\n if op1.exp >= op2.exp:\n op1.int *= 10**(op1.exp - op2.exp)\n else:\n op2.int *= 10**(op2.exp - op1.exp)\n q, r = divmod(op1.int, op2.int)\n # remainder is r*10**ideal_exponent; other is +/-op2.int *\n # 10**ideal_exponent. Apply correction to ensure that\n # abs(remainder) <= abs(other)/2\n if 2*r + (q&1) > op2.int:\n r -= op2.int\n q += 1\n\n if q >= 10**context.prec:\n return context._raise_error(DivisionImpossible)\n\n # result has same sign as self unless r is negative\n sign = self._sign\n if r < 0:\n sign = 1-sign\n r = -r\n\n ans = _dec_from_triple(sign, str(r), ideal_exponent)\n return ans._fix(context)", "metadata": "root.Decimal.remainder_near", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1470 }, { "content": " def __floordiv__(self, other, context=None):\n \"\"\"self // other\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if context is None:\n context = getcontext()\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if self._isinfinity():\n if other._isinfinity():\n return context._raise_error(InvalidOperation, 'INF // INF')\n else:\n return _SignedInfinity[self._sign ^ other._sign]\n\n if not other:\n if self:\n return context._raise_error(DivisionByZero, 'x // 0',\n self._sign ^ other._sign)\n else:\n return context._raise_error(DivisionUndefined, '0 // 0')\n\n return self._divide(other, context)[0]", "metadata": "root.Decimal.__floordiv__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1545 }, { "content": " def __rfloordiv__(self, other, context=None):\n \"\"\"Swaps self/other and returns __floordiv__.\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n return other.__floordiv__(self, context=context)", "metadata": "root.Decimal.__rfloordiv__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1573 }, { "content": " def __float__(self):\n \"\"\"Float representation.\"\"\"\n return float(str(self))", "metadata": "root.Decimal.__float__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1580 }, { "content": " def __int__(self):\n \"\"\"Converts self to an int, truncating if necessary.\"\"\"\n if self._is_special:\n if self._isnan():\n raise ValueError(\"Cannot convert NaN to integer\")\n elif self._isinfinity():\n raise OverflowError(\"Cannot convert infinity to integer\")\n s = (-1)**self._sign\n if self._exp >= 0:\n return s*int(self._int)*10**self._exp\n else:\n return s*int(self._int[:self._exp] or '0')", "metadata": "root.Decimal.__int__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1584 }, { "content": " def real(self):\n return self", "metadata": "root.Decimal.real", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1599 }, { "content": " def imag(self):\n return Decimal(0)", "metadata": "root.Decimal.imag", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1603 }, { "content": " def conjugate(self):\n return self", "metadata": "root.Decimal.conjugate", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1607 }, { "content": " def __complex__(self):\n return complex(float(self))", "metadata": "root.Decimal.__complex__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1610 }, { "content": " def __long__(self):\n \"\"\"Converts to a long.\n\n Equivalent to long(int(self))\n \"\"\"\n return long(self.__int__())", "metadata": "root.Decimal.__long__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1613 }, { "content": " def _fix_nan(self, context):\n \"\"\"Decapitate the payload of a NaN to fit the context\"\"\"\n payload = self._int\n\n # maximum length of payload is precision if _clamp=0,\n # precision-1 if _clamp=1.\n max_payload_len = context.prec - context._clamp\n if len(payload) > max_payload_len:\n payload = payload[len(payload)-max_payload_len:].lstrip('0')\n return _dec_from_triple(self._sign, payload, self._exp, True)\n return Decimal(self)", "metadata": "root.Decimal._fix_nan", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1620 }, { "content": " def _fix(self, context):\n \"\"\"Round if it is necessary to keep self within prec precision.\n\n Rounds and fixes the exponent. Does not raise on a sNaN.\n\n Arguments:\n self - Decimal instance\n context - context used.\n \"\"\"\n\n if self._is_special:\n if self._isnan():\n # decapitate payload if necessary\n return self._fix_nan(context)\n else:\n # self is +/-Infinity; return unaltered\n return Decimal(self)\n\n # if self is zero then exponent should be between Etiny and\n # Emax if _clamp==0, and between Etiny and Etop if _clamp==1.\n Etiny = context.Etiny()\n Etop = context.Etop()\n if not self:\n exp_max = [context.Emax, Etop][context._clamp]\n new_exp = min(max(self._exp, Etiny), exp_max)\n if new_exp != self._exp:\n context._raise_error(Clamped)\n return _dec_from_triple(self._sign, '0', new_exp)\n else:\n return Decimal(self)\n\n # exp_min is the smallest allowable exponent of the result,\n # equal to max(self.adjusted()-context.prec+1, Etiny)\n exp_min = len(self._int) + self._exp - context.prec\n if exp_min > Etop:\n # overflow: exp_min > Etop iff self.adjusted() > Emax\n ans = context._raise_error(Overflow, 'above Emax', self._sign)\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n return ans\n\n self_is_subnormal = exp_min < Etiny\n if self_is_subnormal:\n exp_min = Etiny\n\n # round if self has too many digits\n if self._exp < exp_min:\n digits = len(self._int) + self._exp - exp_min\n if digits < 0:\n self = _dec_from_triple(self._sign, '1', exp_min-1)\n digits = 0\n rounding_method = self._pick_rounding_function[context.rounding]\n changed = getattr(self, rounding_method)(digits)\n coeff = self._int[:digits] or '0'\n if changed > 0:\n coeff = str(int(coeff)+1)\n if len(coeff) > context.prec:\n coeff = coeff[:-1]\n exp_min += 1\n\n # check whether the rounding pushed the exponent out of range\n if exp_min > Etop:\n ans = context._raise_error(Overflow, 'above Emax', self._sign)\n else:\n ans = _dec_from_triple(self._sign, coeff, exp_min)\n\n # raise the appropriate signals, taking care to respect\n # the precedence described in the specification\n if changed and self_is_subnormal:\n context._raise_error(Underflow)\n if self_is_subnormal:\n context._raise_error(Subnormal)\n if changed:\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n if not ans:\n # raise Clamped on underflow to 0\n context._raise_error(Clamped)\n return ans\n\n if self_is_subnormal:\n context._raise_error(Subnormal)\n\n # fold down if _clamp == 1 and self has too few digits\n if context._clamp == 1 and self._exp > Etop:\n context._raise_error(Clamped)\n self_padded = self._int + '0'*(self._exp - Etop)\n return _dec_from_triple(self._sign, self_padded, Etop)\n\n # here self was representable to begin with; return unchanged\n return Decimal(self)", "metadata": "root.Decimal._fix", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1632 }, { "content": " def _round_down(self, prec):\n \"\"\"Also known as round-towards-0, truncate.\"\"\"\n if _all_zeros(self._int, prec):\n return 0\n else:\n return -1", "metadata": "root.Decimal._round_down", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1736 }, { "content": " def _round_up(self, prec):\n \"\"\"Rounds away from 0.\"\"\"\n return -self._round_down(prec)", "metadata": "root.Decimal._round_up", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1743 }, { "content": " def _round_half_up(self, prec):\n \"\"\"Rounds 5 up (away from 0)\"\"\"\n if self._int[prec] in '56789':\n return 1\n elif _all_zeros(self._int, prec):\n return 0\n else:\n return -1", "metadata": "root.Decimal._round_half_up", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1747 }, { "content": " def _round_half_down(self, prec):\n \"\"\"Round 5 down\"\"\"\n if _exact_half(self._int, prec):\n return -1\n else:\n return self._round_half_up(prec)", "metadata": "root.Decimal._round_half_down", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1756 }, { "content": " def _round_half_even(self, prec):\n \"\"\"Round 5 to even, rest to nearest.\"\"\"\n if _exact_half(self._int, prec) and \\\n (prec == 0 or self._int[prec-1] in '02468'):\n return -1\n else:\n return self._round_half_up(prec)", "metadata": "root.Decimal._round_half_even", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1763 }, { "content": " def _round_ceiling(self, prec):\n \"\"\"Rounds up (not away from 0 if negative.)\"\"\"\n if self._sign:\n return self._round_down(prec)\n else:\n return -self._round_down(prec)", "metadata": "root.Decimal._round_ceiling", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1771 }, { "content": " def _round_floor(self, prec):\n \"\"\"Rounds down (not towards 0 if negative)\"\"\"\n if not self._sign:\n return self._round_down(prec)\n else:\n return -self._round_down(prec)", "metadata": "root.Decimal._round_floor", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1778 }, { "content": " def _round_05up(self, prec):\n \"\"\"Round down unless digit prec-1 is 0 or 5.\"\"\"\n if prec and self._int[prec-1] not in '05':\n return self._round_down(prec)\n else:\n return -self._round_down(prec)", "metadata": "root.Decimal._round_05up", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1785 }, { "content": " def fma(self, other, third, context=None):\n \"\"\"Fused multiply-add.\n\n Returns self*other+third with no rounding of the intermediate\n product self*other.\n\n self and other are multiplied together, with no rounding of\n the result. The third operand is then added to the result,\n and a single final rounding is performed.\n \"\"\"\n\n other = _convert_other(other, raiseit=True)\n\n # compute product; raise InvalidOperation if either operand is\n # a signaling NaN or if the product is zero times infinity.\n if self._is_special or other._is_special:\n if context is None:\n context = getcontext()\n if self._exp == 'N':\n return context._raise_error(InvalidOperation, 'sNaN', self)\n if other._exp == 'N':\n return context._raise_error(InvalidOperation, 'sNaN', other)\n if self._exp == 'n':\n product = self\n elif other._exp == 'n':\n product = other\n elif self._exp == 'F':\n if not other:\n return context._raise_error(InvalidOperation,\n 'INF * 0 in fma')\n product = _SignedInfinity[self._sign ^ other._sign]\n elif other._exp == 'F':\n if not self:\n return context._raise_error(InvalidOperation,\n '0 * INF in fma')\n product = _SignedInfinity[self._sign ^ other._sign]\n else:\n product = _dec_from_triple(self._sign ^ other._sign,\n str(int(self._int) * int(other._int)),\n self._exp + other._exp)\n\n third = _convert_other(third, raiseit=True)\n return product.__add__(third, context)", "metadata": "root.Decimal.fma", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1792 }, { "content": " def _power_modulo(self, other, modulo, context=None):\n \"\"\"Three argument version of __pow__\"\"\"\n\n # if can't convert other and modulo to Decimal, raise\n # TypeError; there's no point returning NotImplemented (no\n # equivalent of __rpow__ for three argument pow)\n other = _convert_other(other, raiseit=True)\n modulo = _convert_other(modulo, raiseit=True)\n\n if context is None:\n context = getcontext()\n\n # deal with NaNs: if there are any sNaNs then first one wins,\n # (i.e. behaviour for NaNs is identical to that of fma)\n self_is_nan = self._isnan()\n other_is_nan = other._isnan()\n modulo_is_nan = modulo._isnan()\n if self_is_nan or other_is_nan or modulo_is_nan:\n if self_is_nan == 2:\n return context._raise_error(InvalidOperation, 'sNaN',\n self)\n if other_is_nan == 2:\n return context._raise_error(InvalidOperation, 'sNaN',\n other)\n if modulo_is_nan == 2:\n return context._raise_error(InvalidOperation, 'sNaN',\n modulo)\n if self_is_nan:\n return self._fix_nan(context)\n if other_is_nan:\n return other._fix_nan(context)\n return modulo._fix_nan(context)\n\n # check inputs: we apply same restrictions as Python's pow()\n if not (self._isinteger() and\n other._isinteger() and\n modulo._isinteger()):\n return context._raise_error(InvalidOperation,\n 'pow() 3rd argument not allowed '\n 'unless all arguments are integers')\n if other < 0:\n return context._raise_error(InvalidOperation,\n 'pow() 2nd argument cannot be '\n 'negative when 3rd argument specified')\n if not modulo:\n return context._raise_error(InvalidOperation,\n 'pow() 3rd argument cannot be 0')\n\n # additional restriction for decimal: the modulus must be less\n # than 10**prec in absolute value\n if modulo.adjusted() >= context.prec:\n return context._raise_error(InvalidOperation,\n 'insufficient precision: pow() 3rd '\n 'argument must not have more than '\n 'precision digits')\n\n # define 0**0 == NaN, for consistency with two-argument pow\n # (even though it hurts!)\n if not other and not self:\n return context._raise_error(InvalidOperation,\n 'at least one of pow() 1st argument '\n 'and 2nd argument must be nonzero ;'\n '0**0 is not defined')\n\n # compute sign of result\n if other._iseven():\n sign = 0\n else:\n sign = self._sign\n\n # convert modulo to a Python integer, and self and other to\n # Decimal integers (i.e. force their exponents to be >= 0)\n modulo = abs(int(modulo))\n base = _WorkRep(self.to_integral_value())\n exponent = _WorkRep(other.to_integral_value())\n\n # compute result using integer pow()\n base = (base.int % modulo * pow(10, base.exp, modulo)) % modulo\n for i in xrange(exponent.exp):\n base = pow(base, 10, modulo)\n base = pow(base, exponent.int, modulo)\n\n return _dec_from_triple(sign, str(base), 0)", "metadata": "root.Decimal._power_modulo", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1836 }, { "content": " def _power_exact(self, other, p):\n \"\"\"Attempt to compute self**other exactly.\n\n Given Decimals self and other and an integer p, attempt to\n compute an exact result for the power self**other, with p\n digits of precision. Return None if self**other is not\n exactly representable in p digits.\n\n Assumes that elimination of special cases has already been\n performed: self and other must both be nonspecial; self must\n be positive and not numerically equal to 1; other must be\n nonzero. For efficiency, other._exp should not be too large,\n so that 10**abs(other._exp) is a feasible calculation.\"\"\"\n\n # In the comments below, we write x for the value of self and\n # y for the value of other. Write x = xc*10**xe and y =\n # yc*10**ye.\n\n # The main purpose of this method is to identify the *failure*\n # of x**y to be exactly representable with as little effort as\n # possible. So we look for cheap and easy tests that\n # eliminate the possibility of x**y being exact. Only if all\n # these tests are passed do we go on to actually compute x**y.\n\n # Here's the main idea. First normalize both x and y. We\n # express y as a rational m/n, with m and n relatively prime\n # and n>0. Then for x**y to be exactly representable (at\n # *any* precision), xc must be the nth power of a positive\n # integer and xe must be divisible by n. If m is negative\n # then additionally xc must be a power of either 2 or 5, hence\n # a power of 2**n or 5**n.\n #\n # There's a limit to how small |y| can be: if y=m/n as above\n # then:\n #\n # (1) if xc != 1 then for the result to be representable we\n # need xc**(1/n) >= 2, and hence also xc**|y| >= 2. So\n # if |y| <= 1/nbits(xc) then xc < 2**nbits(xc) <=\n # 2**(1/|y|), hence xc**|y| < 2 and the result is not\n # representable.\n #\n # (2) if xe != 0, |xe|*(1/n) >= 1, so |xe|*|y| >= 1. Hence if\n # |y| < 1/|xe| then the result is not representable.\n #\n # Note that since x is not equal to 1, at least one of (1) and\n # (2) must apply. Now |y| < 1/nbits(xc) iff |yc|*nbits(xc) <\n # 10**-ye iff len(str(|yc|*nbits(xc)) <= -ye.\n #\n # There's also a limit to how large y can be, at least if it's\n # positive: the normalized result will have coefficient xc**y,\n # so if it's representable then xc**y < 10**p, and y <\n # p/log10(xc). Hence if y*log10(xc) >= p then the result is\n # not exactly representable.\n\n # if len(str(abs(yc*xe)) <= -ye then abs(yc*xe) < 10**-ye,\n # so |y| < 1/xe and the result is not representable.\n # Similarly, len(str(abs(yc)*xc_bits)) <= -ye implies |y|\n # < 1/nbits(xc).\n\n x = _WorkRep(self)\n xc, xe = x.int, x.exp\n while xc % 10 == 0:\n xc //= 10\n xe += 1\n\n y = _WorkRep(other)\n yc, ye = y.int, y.exp\n while yc % 10 == 0:\n yc //= 10\n ye += 1\n\n # case where xc == 1: result is 10**(xe*y), with xe*y\n # required to be an integer\n if xc == 1:\n xe *= yc\n # result is now 10**(xe * 10**ye); xe * 10**ye must be integral\n while xe % 10 == 0:\n xe //= 10\n ye += 1\n if ye < 0:\n return None\n exponent = xe * 10**ye\n if y.sign == 1:\n exponent = -exponent\n # if other is a nonnegative integer, use ideal exponent\n if other._isinteger() and other._sign == 0:\n ideal_exponent = self._exp*int(other)\n zeros = min(exponent-ideal_exponent, p-1)\n else:\n zeros = 0\n return _dec_from_triple(0, '1' + '0'*zeros, exponent-zeros)\n\n # case where y is negative: xc must be either a power\n # of 2 or a power of 5.\n if y.sign == 1:\n last_digit = xc % 10\n if last_digit in (2,4,6,8):\n # quick test for power of 2\n if xc & -xc != xc:\n return None\n # now xc is a power of 2; e is its exponent\n e = _nbits(xc)-1\n # find e*y and xe*y; both must be integers\n if ye >= 0:\n y_as_int = yc*10**ye\n e = e*y_as_int\n xe = xe*y_as_int\n else:\n ten_pow = 10**-ye\n e, remainder = divmod(e*yc, ten_pow)\n if remainder:\n return None\n xe, remainder = divmod(xe*yc, ten_pow)\n if remainder:\n return None\n\n if e*65 >= p*93: # 93/65 > log(10)/log(5)\n return None\n xc = 5**e\n\n elif last_digit == 5:\n # e >= log_5(xc) if xc is a power of 5; we have\n # equality all the way up to xc=5**2658\n e = _nbits(xc)*28//65\n xc, remainder = divmod(5**e, xc)\n if remainder:\n return None\n while xc % 5 == 0:\n xc //= 5\n e -= 1\n if ye >= 0:\n y_as_integer = yc*10**ye\n e = e*y_as_integer\n xe = xe*y_as_integer\n else:\n ten_pow = 10**-ye\n e, remainder = divmod(e*yc, ten_pow)\n if remainder:\n return None\n xe, remainder = divmod(xe*yc, ten_pow)\n if remainder:\n return None\n if e*3 >= p*10: # 10/3 > log(10)/log(2)\n return None\n xc = 2**e\n else:\n return None\n\n if xc >= 10**p:\n return None\n xe = -e-xe\n return _dec_from_triple(0, str(xc), xe)\n\n # now y is positive; find m and n such that y = m/n\n if ye >= 0:\n m, n = yc*10**ye, 1\n else:\n if xe != 0 and len(str(abs(yc*xe))) <= -ye:\n return None\n xc_bits = _nbits(xc)\n if xc != 1 and len(str(abs(yc)*xc_bits)) <= -ye:\n return None\n m, n = yc, 10**(-ye)\n while m % 2 == n % 2 == 0:\n m //= 2\n n //= 2\n while m % 5 == n % 5 == 0:\n m //= 5\n n //= 5\n\n # compute nth root of xc*10**xe\n if n > 1:\n # if 1 < xc < 2**n then xc isn't an nth power\n if xc != 1 and xc_bits <= n:\n return None\n\n xe, rem = divmod(xe, n)\n if rem != 0:\n return None\n\n # compute nth root of xc using Newton's method\n a = 1L << -(-_nbits(xc)//n) # initial estimate\n while True:\n q, r = divmod(xc, a**(n-1))\n if a <= q:\n break\n else:\n a = (a*(n-1) + q)//n\n if not (a == q and r == 0):\n return None\n xc = a\n\n # now xc*10**xe is the nth root of the original xc*10**xe\n # compute mth power of xc*10**xe\n\n # if m > p*100//_log10_lb(xc) then m > p/log10(xc), hence xc**m >\n # 10**p and the result is not representable.\n if xc > 1 and m > p*100//_log10_lb(xc):\n return None\n xc = xc**m\n xe *= m\n if xc > 10**p:\n return None\n\n # by this point the result *is* exactly representable\n # adjust the exponent to get as close as possible to the ideal\n # exponent, if necessary\n str_xc = str(xc)\n if other._isinteger() and other._sign == 0:\n ideal_exponent = self._exp*int(other)\n zeros = min(xe-ideal_exponent, p-len(str_xc))\n else:\n zeros = 0\n return _dec_from_triple(0, str_xc+'0'*zeros, xe-zeros)", "metadata": "root.Decimal._power_exact", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 1920 }, { "content": " def __pow__(self, other, modulo=None, context=None):\n \"\"\"Return self ** other [ % modulo].\n\n With two arguments, compute self**other.\n\n With three arguments, compute (self**other) % modulo. For the\n three argument form, the following restrictions on the\n arguments hold:\n\n - all three arguments must be integral\n - other must be nonnegative\n - either self or other (or both) must be nonzero\n - modulo must be nonzero and must have at most p digits,\n where p is the context precision.\n\n If any of these restrictions is violated the InvalidOperation\n flag is raised.\n\n The result of pow(self, other, modulo) is identical to the\n result that would be obtained by computing (self**other) %\n modulo with unbounded precision, but is computed more\n efficiently. It is always exact.\n \"\"\"\n\n if modulo is not None:\n return self._power_modulo(other, modulo, context)\n\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n\n if context is None:\n context = getcontext()\n\n # either argument is a NaN => result is NaN\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n # 0**0 = NaN (!), x**0 = 1 for nonzero x (including +/-Infinity)\n if not other:\n if not self:\n return context._raise_error(InvalidOperation, '0 ** 0')\n else:\n return _One\n\n # result has sign 1 iff self._sign is 1 and other is an odd integer\n result_sign = 0\n if self._sign == 1:\n if other._isinteger():\n if not other._iseven():\n result_sign = 1\n else:\n # -ve**noninteger = NaN\n # (-0)**noninteger = 0**noninteger\n if self:\n return context._raise_error(InvalidOperation,\n 'x ** y with x negative and y not an integer')\n # negate self, without doing any unwanted rounding\n self = self.copy_negate()\n\n # 0**(+ve or Inf)= 0; 0**(-ve or -Inf) = Infinity\n if not self:\n if other._sign == 0:\n return _dec_from_triple(result_sign, '0', 0)\n else:\n return _SignedInfinity[result_sign]\n\n # Inf**(+ve or Inf) = Inf; Inf**(-ve or -Inf) = 0\n if self._isinfinity():\n if other._sign == 0:\n return _SignedInfinity[result_sign]\n else:\n return _dec_from_triple(result_sign, '0', 0)\n\n # 1**other = 1, but the choice of exponent and the flags\n # depend on the exponent of self, and on whether other is a\n # positive integer, a negative integer, or neither\n if self == _One:\n if other._isinteger():\n # exp = max(self._exp*max(int(other), 0),\n # 1-context.prec) but evaluating int(other) directly\n # is dangerous until we know other is small (other\n # could be 1e999999999)\n if other._sign == 1:\n multiplier = 0\n elif other > context.prec:\n multiplier = context.prec\n else:\n multiplier = int(other)\n\n exp = self._exp * multiplier\n if exp < 1-context.prec:\n exp = 1-context.prec\n context._raise_error(Rounded)\n else:\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n exp = 1-context.prec\n\n return _dec_from_triple(result_sign, '1'+'0'*-exp, exp)\n\n # compute adjusted exponent of self\n self_adj = self.adjusted()\n\n # self ** infinity is infinity if self > 1, 0 if self < 1\n # self ** -infinity is infinity if self < 1, 0 if self > 1\n if other._isinfinity():\n if (other._sign == 0) == (self_adj < 0):\n return _dec_from_triple(result_sign, '0', 0)\n else:\n return _SignedInfinity[result_sign]\n\n # from here on, the result always goes through the call\n # to _fix at the end of this function.\n ans = None\n exact = False\n\n # crude test to catch cases of extreme overflow/underflow. If\n # log10(self)*other >= 10**bound and bound >= len(str(Emax))\n # then 10**bound >= 10**len(str(Emax)) >= Emax+1 and hence\n # self**other >= 10**(Emax+1), so overflow occurs. The test\n # for underflow is similar.\n bound = self._log10_exp_bound() + other.adjusted()\n if (self_adj >= 0) == (other._sign == 0):\n # self > 1 and other +ve, or self < 1 and other -ve\n # possibility of overflow\n if bound >= len(str(context.Emax)):\n ans = _dec_from_triple(result_sign, '1', context.Emax+1)\n else:\n # self > 1 and other -ve, or self < 1 and other +ve\n # possibility of underflow to 0\n Etiny = context.Etiny()\n if bound >= len(str(-Etiny)):\n ans = _dec_from_triple(result_sign, '1', Etiny-1)\n\n # try for an exact result with precision +1\n if ans is None:\n ans = self._power_exact(other, context.prec + 1)\n if ans is not None:\n if result_sign == 1:\n ans = _dec_from_triple(1, ans._int, ans._exp)\n exact = True\n\n # usual case: inexact result, x**y computed directly as exp(y*log(x))\n if ans is None:\n p = context.prec\n x = _WorkRep(self)\n xc, xe = x.int, x.exp\n y = _WorkRep(other)\n yc, ye = y.int, y.exp\n if y.sign == 1:\n yc = -yc\n\n # compute correctly rounded result: start with precision +3,\n # then increase precision until result is unambiguously roundable\n extra = 3\n while True:\n coeff, exp = _dpower(xc, xe, yc, ye, p+extra)\n if coeff % (5*10**(len(str(coeff))-p-1)):\n break\n extra += 3\n\n ans = _dec_from_triple(result_sign, str(coeff), exp)\n\n # unlike exp, ln and log10, the power function respects the\n # rounding mode; no need to switch to ROUND_HALF_EVEN here\n\n # There's a difficulty here when 'other' is not an integer and\n # the result is exact. In this case, the specification\n # requires that the Inexact flag be raised (in spite of\n # exactness), but since the result is exact _fix won't do this\n # for us. (Correspondingly, the Underflow signal should also\n # be raised for subnormal results.) We can't directly raise\n # these signals either before or after calling _fix, since\n # that would violate the precedence for signals. So we wrap\n # the ._fix call in a temporary context, and reraise\n # afterwards.\n if exact and not other._isinteger():\n # pad with zeros up to length context.prec+1 if necessary; this\n # ensures that the Rounded signal will be raised.\n if len(ans._int) <= context.prec:\n expdiff = context.prec + 1 - len(ans._int)\n ans = _dec_from_triple(ans._sign, ans._int+'0'*expdiff,\n ans._exp-expdiff)\n\n # create a copy of the current context, with cleared flags/traps\n newcontext = context.copy()\n newcontext.clear_flags()\n for exception in _signals:\n newcontext.traps[exception] = 0\n\n # round in the new context\n ans = ans._fix(newcontext)\n\n # raise Inexact, and if necessary, Underflow\n newcontext._raise_error(Inexact)\n if newcontext.flags[Subnormal]:\n newcontext._raise_error(Underflow)\n\n # propagate signals to the original context; _fix could\n # have raised any of Overflow, Underflow, Subnormal,\n # Inexact, Rounded, Clamped. Overflow needs the correct\n # arguments. Note that the order of the exceptions is\n # important here.\n if newcontext.flags[Overflow]:\n context._raise_error(Overflow, 'above Emax', ans._sign)\n for exception in Underflow, Subnormal, Inexact, Rounded, Clamped:\n if newcontext.flags[exception]:\n context._raise_error(exception)\n\n else:\n ans = ans._fix(context)\n\n return ans", "metadata": "root.Decimal.__pow__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2135 }, { "content": " def __rpow__(self, other, context=None):\n \"\"\"Swaps self/other and returns __pow__.\"\"\"\n other = _convert_other(other)\n if other is NotImplemented:\n return other\n return other.__pow__(self, context=context)", "metadata": "root.Decimal.__rpow__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2351 }, { "content": " def normalize(self, context=None):\n \"\"\"Normalize- strip trailing 0s, change anything equal to 0 to 0e0\"\"\"\n\n if context is None:\n context = getcontext()\n\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n dup = self._fix(context)\n if dup._isinfinity():\n return dup\n\n if not dup:\n return _dec_from_triple(dup._sign, '0', 0)\n exp_max = [context.Emax, context.Etop()][context._clamp]\n end = len(dup._int)\n exp = dup._exp\n while dup._int[end-1] == '0' and exp < exp_max:\n exp += 1\n end -= 1\n return _dec_from_triple(dup._sign, dup._int[:end], exp)", "metadata": "root.Decimal.normalize", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2358 }, { "content": " def quantize(self, exp, rounding=None, context=None, watchexp=True):\n \"\"\"Quantize self so its exponent is the same as that of exp.\n\n Similar to self._rescale(exp._exp) but with error checking.\n \"\"\"\n exp = _convert_other(exp, raiseit=True)\n\n if context is None:\n context = getcontext()\n if rounding is None:\n rounding = context.rounding\n\n if self._is_special or exp._is_special:\n ans = self._check_nans(exp, context)\n if ans:\n return ans\n\n if exp._isinfinity() or self._isinfinity():\n if exp._isinfinity() and self._isinfinity():\n return Decimal(self) # if both are inf, it is OK\n return context._raise_error(InvalidOperation,\n 'quantize with one INF')\n\n # if we're not watching exponents, do a simple rescale\n if not watchexp:\n ans = self._rescale(exp._exp, rounding)\n # raise Inexact and Rounded where appropriate\n if ans._exp > self._exp:\n context._raise_error(Rounded)\n if ans != self:\n context._raise_error(Inexact)\n return ans\n\n # exp._exp should be between Etiny and Emax\n if not (context.Etiny() <= exp._exp <= context.Emax):\n return context._raise_error(InvalidOperation,\n 'target exponent out of bounds in quantize')\n\n if not self:\n ans = _dec_from_triple(self._sign, '0', exp._exp)\n return ans._fix(context)\n\n self_adjusted = self.adjusted()\n if self_adjusted > context.Emax:\n return context._raise_error(InvalidOperation,\n 'exponent of quantize result too large for current context')\n if self_adjusted - exp._exp + 1 > context.prec:\n return context._raise_error(InvalidOperation,\n 'quantize result has too many digits for current context')\n\n ans = self._rescale(exp._exp, rounding)\n if ans.adjusted() > context.Emax:\n return context._raise_error(InvalidOperation,\n 'exponent of quantize result too large for current context')\n if len(ans._int) > context.prec:\n return context._raise_error(InvalidOperation,\n 'quantize result has too many digits for current context')\n\n # raise appropriate flags\n if ans and ans.adjusted() < context.Emin:\n context._raise_error(Subnormal)\n if ans._exp > self._exp:\n if ans != self:\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n\n # call to fix takes care of any necessary folddown, and\n # signals Clamped if necessary\n ans = ans._fix(context)\n return ans", "metadata": "root.Decimal.quantize", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2383 }, { "content": " def same_quantum(self, other):\n \"\"\"Return True if self and other have the same exponent; otherwise\n return False.\n\n If either operand is a special value, the following rules are used:\n * return True if both operands are infinities\n * return True if both operands are NaNs\n * otherwise, return False.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n if self._is_special or other._is_special:\n return (self.is_nan() and other.is_nan() or\n self.is_infinite() and other.is_infinite())\n return self._exp == other._exp", "metadata": "root.Decimal.same_quantum", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2454 }, { "content": " def _rescale(self, exp, rounding):\n \"\"\"Rescale self so that the exponent is exp, either by padding with zeros\n or by truncating digits, using the given rounding mode.\n\n Specials are returned without change. This operation is\n quiet: it raises no flags, and uses no information from the\n context.\n\n exp = exp to scale to (an integer)\n rounding = rounding mode\n \"\"\"\n if self._is_special:\n return Decimal(self)\n if not self:\n return _dec_from_triple(self._sign, '0', exp)\n\n if self._exp >= exp:\n # pad answer with zeros if necessary\n return _dec_from_triple(self._sign,\n self._int + '0'*(self._exp - exp), exp)\n\n # too many digits; round and lose data. If self.adjusted() <\n # exp-1, replace self by 10**(exp-1) before rounding\n digits = len(self._int) + self._exp - exp\n if digits < 0:\n self = _dec_from_triple(self._sign, '1', exp-1)\n digits = 0\n this_function = getattr(self, self._pick_rounding_function[rounding])\n changed = this_function(digits)\n coeff = self._int[:digits] or '0'\n if changed == 1:\n coeff = str(int(coeff)+1)\n return _dec_from_triple(self._sign, coeff, exp)", "metadata": "root.Decimal._rescale", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2469 }, { "content": " def _round(self, places, rounding):\n \"\"\"Round a nonzero, nonspecial Decimal to a fixed number of\n significant figures, using the given rounding mode.\n\n Infinities, NaNs and zeros are returned unaltered.\n\n This operation is quiet: it raises no flags, and uses no\n information from the context.\n\n \"\"\"\n if places <= 0:\n raise ValueError(\"argument should be at least 1 in _round\")\n if self._is_special or not self:\n return Decimal(self)\n ans = self._rescale(self.adjusted()+1-places, rounding)\n # it can happen that the rescale alters the adjusted exponent;\n # for example when rounding 99.97 to 3 significant figures.\n # When this happens we end up with an extra 0 at the end of\n # the number; a second rescale fixes this.\n if ans.adjusted() != self.adjusted():\n ans = ans._rescale(ans.adjusted()+1-places, rounding)\n return ans", "metadata": "root.Decimal._round", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2503 }, { "content": " def to_integral_exact(self, rounding=None, context=None):\n \"\"\"Rounds to a nearby integer.\n\n If no rounding mode is specified, take the rounding mode from\n the context. This method raises the Rounded and Inexact flags\n when appropriate.\n\n See also: to_integral_value, which does exactly the same as\n this method except that it doesn't raise Inexact or Rounded.\n \"\"\"\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n return Decimal(self)\n if self._exp >= 0:\n return Decimal(self)\n if not self:\n return _dec_from_triple(self._sign, '0', 0)\n if context is None:\n context = getcontext()\n if rounding is None:\n rounding = context.rounding\n ans = self._rescale(0, rounding)\n if ans != self:\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n return ans", "metadata": "root.Decimal.to_integral_exact", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2526 }, { "content": " def to_integral_value(self, rounding=None, context=None):\n \"\"\"Rounds to the nearest integer, without raising inexact, rounded.\"\"\"\n if context is None:\n context = getcontext()\n if rounding is None:\n rounding = context.rounding\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n return Decimal(self)\n if self._exp >= 0:\n return Decimal(self)\n else:\n return self._rescale(0, rounding)", "metadata": "root.Decimal.to_integral_value", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2555 }, { "content": " def sqrt(self, context=None):\n \"\"\"Return the square root of self.\"\"\"\n if context is None:\n context = getcontext()\n\n if self._is_special:\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if self._isinfinity() and self._sign == 0:\n return Decimal(self)\n\n if not self:\n # exponent = self._exp // 2. sqrt(-0) = -0\n ans = _dec_from_triple(self._sign, '0', self._exp // 2)\n return ans._fix(context)\n\n if self._sign == 1:\n return context._raise_error(InvalidOperation, 'sqrt(-x), x > 0')\n\n # At this point self represents a positive number. Let p be\n # the desired precision and express self in the form c*100**e\n # with c a positive real number and e an integer, c and e\n # being chosen so that 100**(p-1) <= c < 100**p. Then the\n # (exact) square root of self is sqrt(c)*10**e, and 10**(p-1)\n # <= sqrt(c) < 10**p, so the closest representable Decimal at\n # precision p is n*10**e where n = round_half_even(sqrt(c)),\n # the closest integer to sqrt(c) with the even integer chosen\n # in the case of a tie.\n #\n # To ensure correct rounding in all cases, we use the\n # following trick: we compute the square root to an extra\n # place (precision p+1 instead of precision p), rounding down.\n # Then, if the result is inexact and its last digit is 0 or 5,\n # we increase the last digit to 1 or 6 respectively; if it's\n # exact we leave the last digit alone. Now the final round to\n # p places (or fewer in the case of underflow) will round\n # correctly and raise the appropriate flags.\n\n # use an extra digit of precision\n prec = context.prec+1\n\n # write argument in the form c*100**e where e = self._exp//2\n # is the 'ideal' exponent, to be used if the square root is\n # exactly representable. l is the number of 'digits' of c in\n # base 100, so that 100**(l-1) <= c < 100**l.\n op = _WorkRep(self)\n e = op.exp >> 1\n if op.exp & 1:\n c = op.int * 10\n l = (len(self._int) >> 1) + 1\n else:\n c = op.int\n l = len(self._int)+1 >> 1\n\n # rescale so that c has exactly prec base 100 'digits'\n shift = prec-l\n if shift >= 0:\n c *= 100**shift\n exact = True\n else:\n c, remainder = divmod(c, 100**-shift)\n exact = not remainder\n e -= shift\n\n # find n = floor(sqrt(c)) using Newton's method\n n = 10**prec\n while True:\n q = c//n\n if n <= q:\n break\n else:\n n = n + q >> 1\n exact = exact and n*n == c\n\n if exact:\n # result is exact; rescale to use ideal exponent e\n if shift >= 0:\n # assert n % 10**shift == 0\n n //= 10**shift\n else:\n n *= 10**-shift\n e += shift\n else:\n # result is not exact; fix last digit as described above\n if n % 5 == 0:\n n += 1\n\n ans = _dec_from_triple(0, str(n), e)\n\n # round, and fit to current context\n context = context._shallow_copy()\n rounding = context._set_rounding(ROUND_HALF_EVEN)\n ans = ans._fix(context)\n context.rounding = rounding\n\n return ans", "metadata": "root.Decimal.sqrt", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2574 }, { "content": " def max(self, other, context=None):\n \"\"\"Returns the larger value.\n\n Like max(self, other) except if one is not a number, returns\n NaN (and signals if one is sNaN). Also rounds.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n\n if context is None:\n context = getcontext()\n\n if self._is_special or other._is_special:\n # If one operand is a quiet NaN and the other is number, then the\n # number is always returned\n sn = self._isnan()\n on = other._isnan()\n if sn or on:\n if on == 1 and sn == 0:\n return self._fix(context)\n if sn == 1 and on == 0:\n return other._fix(context)\n return self._check_nans(other, context)\n\n c = self._cmp(other)\n if c == 0:\n # If both operands are finite and equal in numerical value\n # then an ordering is applied:\n #\n # If the signs differ then max returns the operand with the\n # positive sign and min returns the operand with the negative sign\n #\n # If the signs are the same then the exponent is used to select\n # the result. This is exactly the ordering used in compare_total.\n c = self.compare_total(other)\n\n if c == -1:\n ans = other\n else:\n ans = self\n\n return ans._fix(context)", "metadata": "root.Decimal.max", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2673 }, { "content": " def min(self, other, context=None):\n \"\"\"Returns the smaller value.\n\n Like min(self, other) except if one is not a number, returns\n NaN (and signals if one is sNaN). Also rounds.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n\n if context is None:\n context = getcontext()\n\n if self._is_special or other._is_special:\n # If one operand is a quiet NaN and the other is number, then the\n # number is always returned\n sn = self._isnan()\n on = other._isnan()\n if sn or on:\n if on == 1 and sn == 0:\n return self._fix(context)\n if sn == 1 and on == 0:\n return other._fix(context)\n return self._check_nans(other, context)\n\n c = self._cmp(other)\n if c == 0:\n c = self.compare_total(other)\n\n if c == -1:\n ans = self\n else:\n ans = other\n\n return ans._fix(context)", "metadata": "root.Decimal.min", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2715 }, { "content": " def _isinteger(self):\n \"\"\"Returns whether self is an integer\"\"\"\n if self._is_special:\n return False\n if self._exp >= 0:\n return True\n rest = self._int[self._exp:]\n return rest == '0'*len(rest)", "metadata": "root.Decimal._isinteger", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2749 }, { "content": " def _iseven(self):\n \"\"\"Returns True if self is even. Assumes self is an integer.\"\"\"\n if not self or self._exp > 0:\n return True\n return self._int[-1+self._exp] in '02468'", "metadata": "root.Decimal._iseven", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2758 }, { "content": " def adjusted(self):\n \"\"\"Return the adjusted exponent of self\"\"\"\n try:\n return self._exp + len(self._int) - 1\n # If NaN or Infinity, self._exp is string\n except TypeError:\n return 0", "metadata": "root.Decimal.adjusted", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2764 }, { "content": " def canonical(self, context=None):\n \"\"\"Returns the same Decimal object.\n\n As we do not have different encodings for the same number, the\n received object already is in its canonical form.\n \"\"\"\n return self", "metadata": "root.Decimal.canonical", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2772 }, { "content": " def compare_signal(self, other, context=None):\n \"\"\"Compares self to the other operand numerically.\n\n It's pretty much like compare(), but all NaNs signal, with signaling\n NaNs taking precedence over quiet NaNs.\n \"\"\"\n other = _convert_other(other, raiseit = True)\n ans = self._compare_check_nans(other, context)\n if ans:\n return ans\n return self.compare(other, context=context)", "metadata": "root.Decimal.compare_signal", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2780 }, { "content": " def compare_total(self, other):\n \"\"\"Compares self to other using the abstract representations.\n\n This is not like the standard compare, which use their numerical\n value. Note that a total ordering is defined for all possible abstract\n representations.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n\n # if one is negative and the other is positive, it's easy\n if self._sign and not other._sign:\n return _NegativeOne\n if not self._sign and other._sign:\n return _One\n sign = self._sign\n\n # let's handle both NaN types\n self_nan = self._isnan()\n other_nan = other._isnan()\n if self_nan or other_nan:\n if self_nan == other_nan:\n # compare payloads as though they're integers\n self_key = len(self._int), self._int\n other_key = len(other._int), other._int\n if self_key < other_key:\n if sign:\n return _One\n else:\n return _NegativeOne\n if self_key > other_key:\n if sign:\n return _NegativeOne\n else:\n return _One\n return _Zero\n\n if sign:\n if self_nan == 1:\n return _NegativeOne\n if other_nan == 1:\n return _One\n if self_nan == 2:\n return _NegativeOne\n if other_nan == 2:\n return _One\n else:\n if self_nan == 1:\n return _One\n if other_nan == 1:\n return _NegativeOne\n if self_nan == 2:\n return _One\n if other_nan == 2:\n return _NegativeOne\n\n if self < other:\n return _NegativeOne\n if self > other:\n return _One\n\n if self._exp < other._exp:\n if sign:\n return _One\n else:\n return _NegativeOne\n if self._exp > other._exp:\n if sign:\n return _NegativeOne\n else:\n return _One\n return _Zero", "metadata": "root.Decimal.compare_total", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2792 }, { "content": " def compare_total_mag(self, other):\n \"\"\"Compares self to other using abstract repr., ignoring sign.\n\n Like compare_total, but with operand's sign ignored and assumed to be 0.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n\n s = self.copy_abs()\n o = other.copy_abs()\n return s.compare_total(o)", "metadata": "root.Decimal.compare_total_mag", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2865 }, { "content": " def copy_abs(self):\n \"\"\"Returns a copy with the sign set to 0. \"\"\"\n return _dec_from_triple(0, self._int, self._exp, self._is_special)", "metadata": "root.Decimal.copy_abs", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2876 }, { "content": " def copy_negate(self):\n \"\"\"Returns a copy with the sign inverted.\"\"\"\n if self._sign:\n return _dec_from_triple(0, self._int, self._exp, self._is_special)\n else:\n return _dec_from_triple(1, self._int, self._exp, self._is_special)", "metadata": "root.Decimal.copy_negate", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2880 }, { "content": " def copy_sign(self, other):\n \"\"\"Returns self with the sign of other.\"\"\"\n other = _convert_other(other, raiseit=True)\n return _dec_from_triple(other._sign, self._int,\n self._exp, self._is_special)", "metadata": "root.Decimal.copy_sign", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2887 }, { "content": " def exp(self, context=None):\n \"\"\"Returns e ** self.\"\"\"\n\n if context is None:\n context = getcontext()\n\n # exp(NaN) = NaN\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n # exp(-Infinity) = 0\n if self._isinfinity() == -1:\n return _Zero\n\n # exp(0) = 1\n if not self:\n return _One\n\n # exp(Infinity) = Infinity\n if self._isinfinity() == 1:\n return Decimal(self)\n\n # the result is now guaranteed to be inexact (the true\n # mathematical result is transcendental). There's no need to\n # raise Rounded and Inexact here---they'll always be raised as\n # a result of the call to _fix.\n p = context.prec\n adj = self.adjusted()\n\n # we only need to do any computation for quite a small range\n # of adjusted exponents---for example, -29 <= adj <= 10 for\n # the default context. For smaller exponent the result is\n # indistinguishable from 1 at the given precision, while for\n # larger exponent the result either overflows or underflows.\n if self._sign == 0 and adj > len(str((context.Emax+1)*3)):\n # overflow\n ans = _dec_from_triple(0, '1', context.Emax+1)\n elif self._sign == 1 and adj > len(str((-context.Etiny()+1)*3)):\n # underflow to 0\n ans = _dec_from_triple(0, '1', context.Etiny()-1)\n elif self._sign == 0 and adj < -p:\n # p+1 digits; final round will raise correct flags\n ans = _dec_from_triple(0, '1' + '0'*(p-1) + '1', -p)\n elif self._sign == 1 and adj < -p-1:\n # p+1 digits; final round will raise correct flags\n ans = _dec_from_triple(0, '9'*(p+1), -p-1)\n # general case\n else:\n op = _WorkRep(self)\n c, e = op.int, op.exp\n if op.sign == 1:\n c = -c\n\n # compute correctly rounded result: increase precision by\n # 3 digits at a time until we get an unambiguously\n # roundable result\n extra = 3\n while True:\n coeff, exp = _dexp(c, e, p+extra)\n if coeff % (5*10**(len(str(coeff))-p-1)):\n break\n extra += 3\n\n ans = _dec_from_triple(0, str(coeff), exp)\n\n # at this stage, ans should round correctly with *any*\n # rounding mode, not just with ROUND_HALF_EVEN\n context = context._shallow_copy()\n rounding = context._set_rounding(ROUND_HALF_EVEN)\n ans = ans._fix(context)\n context.rounding = rounding\n\n return ans", "metadata": "root.Decimal.exp", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2893 }, { "content": " def is_canonical(self):\n \"\"\"Return True if self is canonical; otherwise return False.\n\n Currently, the encoding of a Decimal instance is always\n canonical, so this method returns True for any Decimal.\n \"\"\"\n return True", "metadata": "root.Decimal.is_canonical", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2968 }, { "content": " def is_finite(self):\n \"\"\"Return True if self is finite; otherwise return False.\n\n A Decimal instance is considered finite if it is neither\n infinite nor a NaN.\n \"\"\"\n return not self._is_special", "metadata": "root.Decimal.is_finite", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2976 }, { "content": " def is_infinite(self):\n \"\"\"Return True if self is infinite; otherwise return False.\"\"\"\n return self._exp == 'F'", "metadata": "root.Decimal.is_infinite", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2984 }, { "content": " def is_nan(self):\n \"\"\"Return True if self is a qNaN or sNaN; otherwise return False.\"\"\"\n return self._exp in ('n', 'N')", "metadata": "root.Decimal.is_nan", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2988 }, { "content": " def is_normal(self, context=None):\n \"\"\"Return True if self is a normal number; otherwise return False.\"\"\"\n if self._is_special or not self:\n return False\n if context is None:\n context = getcontext()\n return context.Emin <= self.adjusted()", "metadata": "root.Decimal.is_normal", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 2992 }, { "content": " def is_qnan(self):\n \"\"\"Return True if self is a quiet NaN; otherwise return False.\"\"\"\n return self._exp == 'n'", "metadata": "root.Decimal.is_qnan", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3000 }, { "content": " def is_signed(self):\n \"\"\"Return True if self is negative; otherwise return False.\"\"\"\n return self._sign == 1", "metadata": "root.Decimal.is_signed", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3004 }, { "content": " def is_snan(self):\n \"\"\"Return True if self is a signaling NaN; otherwise return False.\"\"\"\n return self._exp == 'N'", "metadata": "root.Decimal.is_snan", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3008 }, { "content": " def is_subnormal(self, context=None):\n \"\"\"Return True if self is subnormal; otherwise return False.\"\"\"\n if self._is_special or not self:\n return False\n if context is None:\n context = getcontext()\n return self.adjusted() < context.Emin", "metadata": "root.Decimal.is_subnormal", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3012 }, { "content": " def is_zero(self):\n \"\"\"Return True if self is a zero; otherwise return False.\"\"\"\n return not self._is_special and self._int == '0'", "metadata": "root.Decimal.is_zero", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3020 }, { "content": " def _ln_exp_bound(self):\n \"\"\"Compute a lower bound for the adjusted exponent of self.ln().\n In other words, compute r such that self.ln() >= 10**r. Assumes\n that self is finite and positive and that self != 1.\n \"\"\"\n\n # for 0.1 <= x <= 10 we use the inequalities 1-1/x <= ln(x) <= x-1\n adj = self._exp + len(self._int) - 1\n if adj >= 1:\n # argument >= 10; we use 23/10 = 2.3 as a lower bound for ln(10)\n return len(str(adj*23//10)) - 1\n if adj <= -2:\n # argument <= 0.1\n return len(str((-1-adj)*23//10)) - 1\n op = _WorkRep(self)\n c, e = op.int, op.exp\n if adj == 0:\n # 1 < self < 10\n num = str(c-10**-e)\n den = str(c)\n return len(num) - len(den) - (num < den)\n # adj == -1, 0.1 <= self < 1\n return e + len(str(10**-e - c)) - 1", "metadata": "root.Decimal._ln_exp_bound", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3024 }, { "content": " def ln(self, context=None):\n \"\"\"Returns the natural (base e) logarithm of self.\"\"\"\n\n if context is None:\n context = getcontext()\n\n # ln(NaN) = NaN\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n # ln(0.0) == -Infinity\n if not self:\n return _NegativeInfinity\n\n # ln(Infinity) = Infinity\n if self._isinfinity() == 1:\n return _Infinity\n\n # ln(1.0) == 0.0\n if self == _One:\n return _Zero\n\n # ln(negative) raises InvalidOperation\n if self._sign == 1:\n return context._raise_error(InvalidOperation,\n 'ln of a negative value')\n\n # result is irrational, so necessarily inexact\n op = _WorkRep(self)\n c, e = op.int, op.exp\n p = context.prec\n\n # correctly rounded result: repeatedly increase precision by 3\n # until we get an unambiguously roundable result\n places = p - self._ln_exp_bound() + 2 # at least p+3 places\n while True:\n coeff = _dlog(c, e, places)\n # assert len(str(abs(coeff)))-p >= 1\n if coeff % (5*10**(len(str(abs(coeff)))-p-1)):\n break\n places += 3\n ans = _dec_from_triple(int(coeff<0), str(abs(coeff)), -places)\n\n context = context._shallow_copy()\n rounding = context._set_rounding(ROUND_HALF_EVEN)\n ans = ans._fix(context)\n context.rounding = rounding\n return ans", "metadata": "root.Decimal.ln", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3049 }, { "content": " def _log10_exp_bound(self):\n \"\"\"Compute a lower bound for the adjusted exponent of self.log10().\n In other words, find r such that self.log10() >= 10**r.\n Assumes that self is finite and positive and that self != 1.\n \"\"\"\n\n # For x >= 10 or x < 0.1 we only need a bound on the integer\n # part of log10(self), and this comes directly from the\n # exponent of x. For 0.1 <= x <= 10 we use the inequalities\n # 1-1/x <= log(x) <= x-1. If x > 1 we have |log10(x)| >\n # (1-1/x)/2.31 > 0. If x < 1 then |log10(x)| > (1-x)/2.31 > 0\n\n adj = self._exp + len(self._int) - 1\n if adj >= 1:\n # self >= 10\n return len(str(adj))-1\n if adj <= -2:\n # self < 0.1\n return len(str(-1-adj))-1\n op = _WorkRep(self)\n c, e = op.int, op.exp\n if adj == 0:\n # 1 < self < 10\n num = str(c-10**-e)\n den = str(231*c)\n return len(num) - len(den) - (num < den) + 2\n # adj == -1, 0.1 <= self < 1\n num = str(10**-e-c)\n return len(num) + e - (num < \"231\") - 1", "metadata": "root.Decimal._log10_exp_bound", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3099 }, { "content": " def log10(self, context=None):\n \"\"\"Returns the base 10 logarithm of self.\"\"\"\n\n if context is None:\n context = getcontext()\n\n # log10(NaN) = NaN\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n # log10(0.0) == -Infinity\n if not self:\n return _NegativeInfinity\n\n # log10(Infinity) = Infinity\n if self._isinfinity() == 1:\n return _Infinity\n\n # log10(negative or -Infinity) raises InvalidOperation\n if self._sign == 1:\n return context._raise_error(InvalidOperation,\n 'log10 of a negative value')\n\n # log10(10**n) = n\n if self._int[0] == '1' and self._int[1:] == '0'*(len(self._int) - 1):\n # answer may need rounding\n ans = Decimal(self._exp + len(self._int) - 1)\n else:\n # result is irrational, so necessarily inexact\n op = _WorkRep(self)\n c, e = op.int, op.exp\n p = context.prec\n\n # correctly rounded result: repeatedly increase precision\n # until result is unambiguously roundable\n places = p-self._log10_exp_bound()+2\n while True:\n coeff = _dlog10(c, e, places)\n # assert len(str(abs(coeff)))-p >= 1\n if coeff % (5*10**(len(str(abs(coeff)))-p-1)):\n break\n places += 3\n ans = _dec_from_triple(int(coeff<0), str(abs(coeff)), -places)\n\n context = context._shallow_copy()\n rounding = context._set_rounding(ROUND_HALF_EVEN)\n ans = ans._fix(context)\n context.rounding = rounding\n return ans", "metadata": "root.Decimal.log10", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3129 }, { "content": " def logb(self, context=None):\n \"\"\" Returns the exponent of the magnitude of self's MSD.\n\n The result is the integer which is the exponent of the magnitude\n of the most significant digit of self (as though it were truncated\n to a single digit while maintaining the value of that digit and\n without limiting the resulting exponent).\n \"\"\"\n # logb(NaN) = NaN\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if context is None:\n context = getcontext()\n\n # logb(+/-Inf) = +Inf\n if self._isinfinity():\n return _Infinity\n\n # logb(0) = -Inf, DivisionByZero\n if not self:\n return context._raise_error(DivisionByZero, 'logb(0)', 1)\n\n # otherwise, simply return the adjusted exponent of self, as a\n # Decimal. Note that no attempt is made to fit the result\n # into the current context.\n ans = Decimal(self.adjusted())\n return ans._fix(context)", "metadata": "root.Decimal.logb", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3180 }, { "content": " def _islogical(self):\n \"\"\"Return True if self is a logical operand.\n\n For being logical, it must be a finite number with a sign of 0,\n an exponent of 0, and a coefficient whose digits must all be\n either 0 or 1.\n \"\"\"\n if self._sign != 0 or self._exp != 0:\n return False\n for dig in self._int:\n if dig not in '01':\n return False\n return True", "metadata": "root.Decimal._islogical", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3210 }, { "content": " def _fill_logical(self, context, opa, opb):\n dif = context.prec - len(opa)\n if dif > 0:\n opa = '0'*dif + opa\n elif dif < 0:\n opa = opa[-context.prec:]\n dif = context.prec - len(opb)\n if dif > 0:\n opb = '0'*dif + opb\n elif dif < 0:\n opb = opb[-context.prec:]\n return opa, opb", "metadata": "root.Decimal._fill_logical", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3224 }, { "content": " def logical_and(self, other, context=None):\n \"\"\"Applies an 'and' operation between self and other's digits.\"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n if not self._islogical() or not other._islogical():\n return context._raise_error(InvalidOperation)\n\n # fill to context.prec\n (opa, opb) = self._fill_logical(context, self._int, other._int)\n\n # make the operation, and clean starting zeroes\n result = \"\".join([str(int(a)&int(b)) for a,b in zip(opa,opb)])\n return _dec_from_triple(0, result.lstrip('0') or '0', 0)", "metadata": "root.Decimal.logical_and", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3237 }, { "content": " def logical_invert(self, context=None):\n \"\"\"Invert all its digits.\"\"\"\n if context is None:\n context = getcontext()\n return self.logical_xor(_dec_from_triple(0,'1'*context.prec,0),\n context)", "metadata": "root.Decimal.logical_invert", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3254 }, { "content": " def logical_or(self, other, context=None):\n \"\"\"Applies an 'or' operation between self and other's digits.\"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n if not self._islogical() or not other._islogical():\n return context._raise_error(InvalidOperation)\n\n # fill to context.prec\n (opa, opb) = self._fill_logical(context, self._int, other._int)\n\n # make the operation, and clean starting zeroes\n result = \"\".join([str(int(a)|int(b)) for a,b in zip(opa,opb)])\n return _dec_from_triple(0, result.lstrip('0') or '0', 0)", "metadata": "root.Decimal.logical_or", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3261 }, { "content": " def logical_xor(self, other, context=None):\n \"\"\"Applies an 'xor' operation between self and other's digits.\"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n if not self._islogical() or not other._islogical():\n return context._raise_error(InvalidOperation)\n\n # fill to context.prec\n (opa, opb) = self._fill_logical(context, self._int, other._int)\n\n # make the operation, and clean starting zeroes\n result = \"\".join([str(int(a)^int(b)) for a,b in zip(opa,opb)])\n return _dec_from_triple(0, result.lstrip('0') or '0', 0)", "metadata": "root.Decimal.logical_xor", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3278 }, { "content": " def max_mag(self, other, context=None):\n \"\"\"Compares the values numerically with their sign ignored.\"\"\"\n other = _convert_other(other, raiseit=True)\n\n if context is None:\n context = getcontext()\n\n if self._is_special or other._is_special:\n # If one operand is a quiet NaN and the other is number, then the\n # number is always returned\n sn = self._isnan()\n on = other._isnan()\n if sn or on:\n if on == 1 and sn == 0:\n return self._fix(context)\n if sn == 1 and on == 0:\n return other._fix(context)\n return self._check_nans(other, context)\n\n c = self.copy_abs()._cmp(other.copy_abs())\n if c == 0:\n c = self.compare_total(other)\n\n if c == -1:\n ans = other\n else:\n ans = self\n\n return ans._fix(context)", "metadata": "root.Decimal.max_mag", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3295 }, { "content": " def min_mag(self, other, context=None):\n \"\"\"Compares the values numerically with their sign ignored.\"\"\"\n other = _convert_other(other, raiseit=True)\n\n if context is None:\n context = getcontext()\n\n if self._is_special or other._is_special:\n # If one operand is a quiet NaN and the other is number, then the\n # number is always returned\n sn = self._isnan()\n on = other._isnan()\n if sn or on:\n if on == 1 and sn == 0:\n return self._fix(context)\n if sn == 1 and on == 0:\n return other._fix(context)\n return self._check_nans(other, context)\n\n c = self.copy_abs()._cmp(other.copy_abs())\n if c == 0:\n c = self.compare_total(other)\n\n if c == -1:\n ans = self\n else:\n ans = other\n\n return ans._fix(context)", "metadata": "root.Decimal.min_mag", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3325 }, { "content": " def next_minus(self, context=None):\n \"\"\"Returns the largest representable number smaller than itself.\"\"\"\n if context is None:\n context = getcontext()\n\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if self._isinfinity() == -1:\n return _NegativeInfinity\n if self._isinfinity() == 1:\n return _dec_from_triple(0, '9'*context.prec, context.Etop())\n\n context = context.copy()\n context._set_rounding(ROUND_FLOOR)\n context._ignore_all_flags()\n new_self = self._fix(context)\n if new_self != self:\n return new_self\n return self.__sub__(_dec_from_triple(0, '1', context.Etiny()-1),\n context)", "metadata": "root.Decimal.next_minus", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3355 }, { "content": " def next_plus(self, context=None):\n \"\"\"Returns the smallest representable number larger than itself.\"\"\"\n if context is None:\n context = getcontext()\n\n ans = self._check_nans(context=context)\n if ans:\n return ans\n\n if self._isinfinity() == 1:\n return _Infinity\n if self._isinfinity() == -1:\n return _dec_from_triple(1, '9'*context.prec, context.Etop())\n\n context = context.copy()\n context._set_rounding(ROUND_CEILING)\n context._ignore_all_flags()\n new_self = self._fix(context)\n if new_self != self:\n return new_self\n return self.__add__(_dec_from_triple(0, '1', context.Etiny()-1),\n context)", "metadata": "root.Decimal.next_plus", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3378 }, { "content": " def next_toward(self, other, context=None):\n \"\"\"Returns the number closest to self, in the direction towards other.\n\n The result is the closest representable number to self\n (excluding self) that is in the direction towards other,\n unless both have the same value. If the two operands are\n numerically equal, then the result is a copy of self with the\n sign set to be the same as the sign of other.\n \"\"\"\n other = _convert_other(other, raiseit=True)\n\n if context is None:\n context = getcontext()\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n comparison = self._cmp(other)\n if comparison == 0:\n return self.copy_sign(other)\n\n if comparison == -1:\n ans = self.next_plus(context)\n else: # comparison == 1\n ans = self.next_minus(context)\n\n # decide which flags to raise using value of ans\n if ans._isinfinity():\n context._raise_error(Overflow,\n 'Infinite result from next_toward',\n ans._sign)\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n elif ans.adjusted() < context.Emin:\n context._raise_error(Underflow)\n context._raise_error(Subnormal)\n context._raise_error(Inexact)\n context._raise_error(Rounded)\n # if precision == 1 then we don't raise Clamped for a\n # result 0E-Etiny.\n if not ans:\n context._raise_error(Clamped)\n\n return ans", "metadata": "root.Decimal.next_toward", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3401 }, { "content": " def number_class(self, context=None):\n \"\"\"Returns an indication of the class of self.\n\n The class is one of the following strings:\n sNaN\n NaN\n -Infinity\n -Normal\n -Subnormal\n -Zero\n +Zero\n +Subnormal\n +Normal\n +Infinity\n \"\"\"\n if self.is_snan():\n return \"sNaN\"\n if self.is_qnan():\n return \"NaN\"\n inf = self._isinfinity()\n if inf == 1:\n return \"+Infinity\"\n if inf == -1:\n return \"-Infinity\"\n if self.is_zero():\n if self._sign:\n return \"-Zero\"\n else:\n return \"+Zero\"\n if context is None:\n context = getcontext()\n if self.is_subnormal(context=context):\n if self._sign:\n return \"-Subnormal\"\n else:\n return \"+Subnormal\"\n # just a normal, regular, boring number, :)\n if self._sign:\n return \"-Normal\"\n else:\n return \"+Normal\"", "metadata": "root.Decimal.number_class", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3447 }, { "content": " def radix(self):\n \"\"\"Just returns 10, as this is Decimal, :)\"\"\"\n return Decimal(10)", "metadata": "root.Decimal.radix", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3489 }, { "content": " def rotate(self, other, context=None):\n \"\"\"Returns a rotated copy of self, value-of-other times.\"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if other._exp != 0:\n return context._raise_error(InvalidOperation)\n if not (-context.prec <= int(other) <= context.prec):\n return context._raise_error(InvalidOperation)\n\n if self._isinfinity():\n return Decimal(self)\n\n # get values, pad if necessary\n torot = int(other)\n rotdig = self._int\n topad = context.prec - len(rotdig)\n if topad > 0:\n rotdig = '0'*topad + rotdig\n elif topad < 0:\n rotdig = rotdig[-topad:]\n\n # let's rotate!\n rotated = rotdig[torot:] + rotdig[:torot]\n return _dec_from_triple(self._sign,\n rotated.lstrip('0') or '0', self._exp)", "metadata": "root.Decimal.rotate", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3493 }, { "content": " def scaleb(self, other, context=None):\n \"\"\"Returns self operand after adding the second value to its exp.\"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if other._exp != 0:\n return context._raise_error(InvalidOperation)\n liminf = -2 * (context.Emax + context.prec)\n limsup = 2 * (context.Emax + context.prec)\n if not (liminf <= int(other) <= limsup):\n return context._raise_error(InvalidOperation)\n\n if self._isinfinity():\n return Decimal(self)\n\n d = _dec_from_triple(self._sign, self._int, self._exp + int(other))\n d = d._fix(context)\n return d", "metadata": "root.Decimal.scaleb", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3526 }, { "content": " def shift(self, other, context=None):\n \"\"\"Returns a shifted copy of self, value-of-other times.\"\"\"\n if context is None:\n context = getcontext()\n\n other = _convert_other(other, raiseit=True)\n\n ans = self._check_nans(other, context)\n if ans:\n return ans\n\n if other._exp != 0:\n return context._raise_error(InvalidOperation)\n if not (-context.prec <= int(other) <= context.prec):\n return context._raise_error(InvalidOperation)\n\n if self._isinfinity():\n return Decimal(self)\n\n # get values, pad if necessary\n torot = int(other)\n rotdig = self._int\n topad = context.prec - len(rotdig)\n if topad > 0:\n rotdig = '0'*topad + rotdig\n elif topad < 0:\n rotdig = rotdig[-topad:]\n\n # let's shift!\n if torot < 0:\n shifted = rotdig[:torot]\n else:\n shifted = rotdig + '0'*torot\n shifted = shifted[-context.prec:]\n\n return _dec_from_triple(self._sign,\n shifted.lstrip('0') or '0', self._exp)", "metadata": "root.Decimal.shift", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3551 }, { "content": " def __reduce__(self):\n return (self.__class__, (str(self),))", "metadata": "root.Decimal.__reduce__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3590 }, { "content": " def __copy__(self):\n if type(self) is Decimal:\n return self # I'm immutable; therefore I am my own clone\n return self.__class__(str(self))", "metadata": "root.Decimal.__copy__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3593 }, { "content": " def __deepcopy__(self, memo):\n if type(self) is Decimal:\n return self # My components are also immutable\n return self.__class__(str(self))", "metadata": "root.Decimal.__deepcopy__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3598 }, { "content": " def __format__(self, specifier, context=None, _localeconv=None):\n \"\"\"Format a Decimal instance according to the given specifier.\n\n The specifier should be a standard format specifier, with the\n form described in PEP 3101. Formatting types 'e', 'E', 'f',\n 'F', 'g', 'G', 'n' and '%' are supported. If the formatting\n type is omitted it defaults to 'g' or 'G', depending on the\n value of context.capitals.\n \"\"\"\n\n # Note: PEP 3101 says that if the type is not present then\n # there should be at least one digit after the decimal point.\n # We take the liberty of ignoring this requirement for\n # Decimal---it's presumably there to make sure that\n # format(float, '') behaves similarly to str(float).\n if context is None:\n context = getcontext()\n\n spec = _parse_format_specifier(specifier, _localeconv=_localeconv)\n\n # special values don't care about the type or precision\n if self._is_special:\n sign = _format_sign(self._sign, spec)\n body = str(self.copy_abs())\n return _format_align(sign, body, spec)\n\n # a type of None defaults to 'g' or 'G', depending on context\n if spec['type'] is None:\n spec['type'] = ['g', 'G'][context.capitals]\n\n # if type is '%', adjust exponent of self accordingly\n if spec['type'] == '%':\n self = _dec_from_triple(self._sign, self._int, self._exp+2)\n\n # round if necessary, taking rounding mode from the context\n rounding = context.rounding\n precision = spec['precision']\n if precision is not None:\n if spec['type'] in 'eE':\n self = self._round(precision+1, rounding)\n elif spec['type'] in 'fF%':\n self = self._rescale(-precision, rounding)\n elif spec['type'] in 'gG' and len(self._int) > precision:\n self = self._round(precision, rounding)\n # special case: zeros with a positive exponent can't be\n # represented in fixed point; rescale them to 0e0.\n if not self and self._exp > 0 and spec['type'] in 'fF%':\n self = self._rescale(0, rounding)\n\n # figure out placement of the decimal point\n leftdigits = self._exp + len(self._int)\n if spec['type'] in 'eE':\n if not self and precision is not None:\n dotplace = 1 - precision\n else:\n dotplace = 1\n elif spec['type'] in 'fF%':\n dotplace = leftdigits\n elif spec['type'] in 'gG':\n if self._exp <= 0 and leftdigits > -6:\n dotplace = leftdigits\n else:\n dotplace = 1\n\n # find digits before and after decimal point, and get exponent\n if dotplace < 0:\n intpart = '0'\n fracpart = '0'*(-dotplace) + self._int\n elif dotplace > len(self._int):\n intpart = self._int + '0'*(dotplace-len(self._int))\n fracpart = ''\n else:\n intpart = self._int[:dotplace] or '0'\n fracpart = self._int[dotplace:]\n exp = leftdigits-dotplace\n\n # done with the decimal-specific stuff; hand over the rest\n # of the formatting to the _format_number function\n return _format_number(self._sign, intpart, fracpart, exp, spec)", "metadata": "root.Decimal.__format__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3605 }, { "content": " def __tojava__(self, java_class):\n if java_class not in (BigDecimal, Object):\n return Py.NoConversion\n return BigDecimal(str(self))", "metadata": "root.Decimal.__tojava__", "header": "['class', 'Decimal', '(', 'object', ')', ':', '___EOS___']", "index": 3686 } ]

[ { "span": "cls(f)", "start_line": 691, "start_column": 19, "end_line": 691, "end_column": 25 }, { "span": "cls(repr(f))", "start_line": 693, "start_column": 19, "end_line": 693, "end_column": 31 } ]

[ { "span": "class Decimal(object):", "start_line": 513, "start_column": 0, "end_line": 513, "end_column": 22 }, { "span": "cls,", "start_line": 669, "start_column": 19, "end_line": 669, "end_column": 22 } ]

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" ", "are", " ", "sign", "ified", " ", "by", " ", "\\u", "is", "\\u", "special", " ", "==", " ", "True_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "We", "'", "re", " ", "immutable", ",", " ", "so", " ", "use", " ", "\\u\\u", "new", "\\u\\u", " ", "not", " ", "\\u\\u", "init\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "@", "class", "method", ",", " ", "but", " ", "@", "decorat", "or", " ", "is", " ", "not", " ", "valid", " ", "Pyth", "on", " ", "2.3", " ", "synta", "x", ",", " ", "so_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "don", "'", "t", " ", "use", " ", "it", " ", "(", "see", " ", "note", "s", " ", "on", " ", "Py", "2.3", " ", "compatibility", " ", "at", " ", "top", " ", "of", " ", "file", ")_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "from", "\\u", "float_", "=_", "classmethod_", "(_", "from", "\\u", "float_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Not", "e", ":", " ", "The", " ", "Deci", "mal", " ", "standard", " ", "doe", "sn", "'", "t", " ", "cover", " ", "rich", " ", "comparisons", " ", "for_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Deci", "mal", "s", ".", " ", " ", "In", " ", "partic", "ular", ",", " ", "the", " ", "specifica", "tion", " ", "is", " ", "sile", "nt", " ", "on", " ", "the_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "subject", " ", "of", " ", "what", " ", "shou", "ld", " ", "happ", "en", " ", "for", " ", "a", " ", "compa", "ris", "on", " ", "involv", "ing", " ", "a", " ", "Na", "N", "._", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "We", " 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[ { "content": "\"\"\"\nProblem Statement\n\nJim enters a candy shop which has N different types of candies, each candy is of the same price. Jim has enough money to\nbuy K candies. In how many different ways can he purchase K candies if there are infinite candies of each kind?\n\"\"\"\nMOD = 10 ** 9\n__author__ = 'Danyang'\n\n\n\n\nif __name__ == \"__main__\":\n import sys\n\n f = open(\"1.in\", \"r\")\n # f = sys.stdin\n testcases = int(f.readline().strip())\n solution = Solution()\n for t in xrange(testcases):\n # construct cipher\n N = int(f.readline().strip())\n K = int(f.readline().strip())\n cipher = N, K\n # solve\n s = \"%s\\n\" % (solution.solve(cipher))\n print s,\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Solution(object):\n", "metadata": "root.Solution", "header": "['module', '___EOS___']", "index": 10 }, { "content": " def __init__(self):\n \"\"\"\n \\binom nk=\\binom{n-1}{k-1}+\\binom{n-1}k, \\text{ for } 0<k<n,\n \"\"\"\n self.C = [[1 for _ in xrange(2000)] for _ in xrange(2000)]\n for n in xrange(1, 2000):\n for k in xrange(1, n): # 0<k<n\n self.C[n][k] = self.C[n - 1][k - 1] + self.C[n - 1][k]", "metadata": "root.Solution.__init__", "header": "['class', 'Solution', '(', 'object', ')', ':', '___EOS___']", "index": 11 }, { "content": " def solve(self, cipher):\n \"\"\"\n Abstract: N types, K holes, repeatable\n nCk when items are duplicated\n\n reference:\n dp algorithm: https://github.com/derekhh/HackerRank/blob/master/k-candy-store.cpp\n\n :param cipher: the cipher\n \"\"\"\n N, K = cipher\n return self.C[N + K - 1][K] % MOD", "metadata": "root.Solution.solve", "header": "['class', 'Solution', '(', 'object', ')', ':', '___EOS___']", "index": 20 } ]

[ { "span": "import sys", "start_line": 35, "start_column": 4, "end_line": 35, "end_column": 14 } ]

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[ { "content": "class TooSkewedLabelsException(Exception):\n\n pass", "metadata": "root.TooSkewedLabelsException", "header": "['module', '___EOS___']", "index": 17 }, { "content": "class DssgBinaryClassifier(object):\n\n \"\"\" This is meant to be an abstract class\n \"\"\"\n\n\n\n\n\n pass", "metadata": "root.DssgBinaryClassifier", "header": "['module', '___EOS___']", "index": 28 }, { "content": "class DssgBinaryClassifierMajorityVote(DssgBinaryClassifier):\n\n \"\"\"\n Majority vote classifier.\n \"\"\"\n\n\n\n\n\n\n pass", "metadata": "root.DssgBinaryClassifierMajorityVote", "header": "['module', '___EOS___']", "index": 54 }, { "content": " def train(self, binaryLabeledMessageList):\n nPos = countTruth(lambda x: x[1] == 'pos', binaryLabeledMessageList)\n nNeg = countTruth(lambda x: x[1] == 'neg', binaryLabeledMessageList)\n assert(nPos + nNeg == len(binaryLabeledMessageList))\n posNegPrbDic = {'pos': float(\n nPos) / (nPos + nNeg),\n 'neg': float(nNeg) / (nPos + nNeg)}\n\n self._posNegPrbDic = posNegPrbDic\n pass", "metadata": "root.DssgBinaryClassifierMajorityVote.train", "header": "['class', 'DssgBinaryClassifierMajorityVote', '(', 'DssgBinaryClassifier', ')', ':', '___EOS___']", "index": 63 }, { "content": "class DssgBinaryClassifierSVC(DssgBinaryClassifier):\n\n \"\"\"\n Linear SVM binary classifier (based on LibLinear).\n \"\"\"\n\n\n\n\n\n\n pass", "metadata": "root.DssgBinaryClassifierSVC", "header": "['module', '___EOS___']", "index": 98 }, { "content": " def train(self, messageList):\n #--- prepare variables\n vectorizer = self._vectorizer\n balance = self._balance\n C = self._C\n tol = self._tol\n\n #---\n msgList = map(lambda x: x[0], messageList)\n y = np.array(map(lambda x: 1 if x[1] == 'pos' else 0, messageList))\n X = vectorizer.fitTransform(msgList)\n\n class_weight = 'auto' if balance else None\n classifier = LinearSVC(\n C=C, loss='l2', penalty='l1', dual=False, tol=tol,\n random_state=0, class_weight=class_weight)\n\n classifier.fit(X, y)\n\n #- learn sigmoid\n yDeci = classifier.decision_function(X)\n yy = [1 if v == 1 else -1 for v in y]\n [A, B] = platt.SigmoidTrain(yDeci, yy)\n plattModel = [A, B]\n\n #- save to instance variable\n self._classifier = classifier\n self._plattModel = plattModel\n pass", "metadata": "root.DssgBinaryClassifierSVC.train", "header": "['class', 'DssgBinaryClassifierSVC', '(', 'DssgBinaryClassifier', ')', ':', '___EOS___']", "index": 113 }, { "content": "class DssgBinaryClassifierLogisticRegression(DssgBinaryClassifier):\n\n \"\"\"\n Linear logistic regression binary classifier (based on LibLinear).\n \"\"\"\n\n\n\n\n\n\n pass", "metadata": "root.DssgBinaryClassifierLogisticRegression", "header": "['module', '___EOS___']", "index": 169 }, { "content": " def train(self, messageList):\n #--- prepare variables\n vectorizer = self._vectorizer\n balance = self._balance\n C = self._C\n tol = self._tol\n\n msgList = map(lambda x: x[0], messageList)\n y = np.array(map(lambda x: 1 if x[1] == 'pos' else 0, messageList))\n X = vectorizer.fitTransform(msgList)\n\n class_weight = 'auto' if balance else None\n classifier = LogisticRegression(\n C=C,\n penalty=\"l2\",\n dual=False,\n tol=tol,\n random_state=0,\n class_weight=class_weight)\n\n classifier.fit(X, y)\n\n #- save to instance variable\n self._classifier = classifier\n pass", "metadata": "root.DssgBinaryClassifierLogisticRegression.train", "header": "['class', 'DssgBinaryClassifierLogisticRegression', '(', 'DssgBinaryClassifier', ')', ':', '___EOS___']", "index": 183 }, { "content": "class DssgBinaryClassifierAdaptiveInterpolation(DssgBinaryClassifier):\n\n \"\"\"\n predicts by \"(1-alpha)*f_{global} * alpha*f_{local}\"\n It takes a trained global classifier, and untrained (initialized) local classifier,\n and then train local classifier and alpha.\n \"\"\"\n\n\n\n\n\n\n pass", "metadata": "root.DssgBinaryClassifierAdaptiveInterpolation", "header": "['module', '___EOS___']", "index": 234 }, { "content": " def train(self, messageList):\n globalClassifier = self._globalClassifier\n localClassifier = self._localClassifier\n trainLog = \"\"\n nFolds = 5\n\n msgList = map(lambda x: x[0], messageList)\n y = np.array(map(lambda x: 1 if x[1] == 'pos' else 0, messageList))\n\n #--- obtain global decision function list\n globalDFList = []\n for msg in msgList:\n v = globalClassifier.predictScore(msg)\n globalDFList.append(v['pos'])\n\n tt = tic()\n #--- obtain local decision function list (by cross-prediction)\n if (sum(y) < 2):\n #--- if there are less than 2 positive data points, set alpha=0\n trainLog += \"There are less than 2 positive data points. setting maxAlpha=0\\n\"\n maxAlpha = 0\n else:\n #--- split into 5 and cross-predict decision function\n localDFList = [float('nan')] * len(messageList)\n folds = StratifiedKFold(y, nFolds)\n for trainIdx, testIdx in folds:\n train = [messageList[i] for i in trainIdx]\n test = [messageList[i] for i in testIdx]\n\n tmpClassifier = copy.deepcopy(localClassifier)\n tmpClassifier.train(train)\n\n curDFList = []\n for x in test:\n v = tmpClassifier.predictScore(x[0])\n curDFList.append(v['pos'])\n\n for i in range(len(test)):\n localDFList[testIdx[i]] = curDFList[i]\n assert(countTruth(lambda x: np.isnan(x), localDFList) == 0)\n\n #--- try many alpha's, and measure F1\n f1List = []\n alphaList = np.linspace(0.0, 1.0, 101)\n for alpha in alphaList:\n combinedDFList = [(1 - alpha) * globalDFList[i] + alpha * localDFList[i]\n for i in range(len(globalDFList))]\n predy = [1 if v >= 0.0 else 0 for v in combinedDFList]\n #- measure F1\n f1 = metrics.f1_score(y, predy)\n f1List.append(f1)\n\n #--- pick alpha that maximizes F1\n trainLog += \"Finding alpha maximizing F1...\\n\"\n maxF1 = np.max(f1List)\n maxIdx = np.where(np.array(f1List) == maxF1)\n maxIdx = maxIdx[0]\n assert(len(maxIdx) != 0)\n candidateMaxAlpha = [alphaList[i] for i in maxIdx]\n maxAlpha = np.median(candidateMaxAlpha)\n\n trainLog += \"max(f1List) = %.3f\\n\" % maxF1\n trainLog += \"argmax_alpha = \\n%s\\n\" % str(\n np.array([alphaList[i] for i in maxIdx]))\n trainLog += \"chosen alpha by median = %.3f\\n\" % maxAlpha\n\n #--- train local classifier using all data\n localClassifier.train(binaryLabeledMessageList)\n\n elapsed = toc(tt)\n trainLog += \"Time taken for training: %.3f (sec)\\n\" % elapsed\n\n self._localClassifier = localClassifier\n self._alpha = maxAlpha\n self._trainLog = trainLog\n\n #--- learn sigmoid\n yDeci = [self.predictScore(msg)['pos'] for msg in messageList]\n yy = [1 if v == 1 else -1 for v in y]\n [A, B] = platt.SigmoidTrain(yDeci, yy)\n plattModel = [A, B]\n\n self._plattModel = plattModel\n pass", "metadata": "root.DssgBinaryClassifierAdaptiveInterpolation.train", "header": "['class', 'DssgBinaryClassifierAdaptiveInterpolation', '(', 'DssgBinaryClassifier', ')', ':', '___EOS___']", "index": 256 }, { "content": "class DssgBinaryClassifierAdaptiveSVC(DssgBinaryClassifier):\n\n \"\"\"\n predicts by a training SVM on feature vector like [f_{global}, f_{local}]\n \"\"\"\n\n\n\n\n\n\n pass", "metadata": "root.DssgBinaryClassifierAdaptiveSVC", "header": "['module', '___EOS___']", "index": 379 }, { "content": " def train(self, binaryLabeledMessageList):\n globalClassifier = self._globalClassifier\n localClassifier = self._localClassifier\n\n trainLog = \"\"\n nFolds = 5\n\n msgList = map(lambda x: x[0], binaryLabeledMessageList)\n y = np.array(\n map(lambda x: 1 if x[1] == 'pos' else 0,\n binaryLabeledMessageList))\n\n #--- obtain global decision function list\n globalDFList = []\n for msg in msgList:\n v = globalClassifier.predictScore(msg)\n globalDFList.append(v['pos'])\n\n tt = tic()\n #--- obtain local decision function list (by cross-prediction)\n metaClassifier = None\n if (sum(y) < 2):\n #--- if there are less than 2 positive data points, set alpha=0\n trainLog += \"There are less than 2 positive data points. using globalClassifier as the classifier\\n\"\n localClassifier = None\n else:\n #--- split into 5 and cross-predict decision function\n localDFList = [float('nan')] * len(binaryLabeledMessageList)\n folds = StratifiedKFold(y, nFolds)\n for trainIdx, testIdx in folds:\n train = [binaryLabeledMessageList[i] for i in trainIdx]\n test = [binaryLabeledMessageList[i] for i in testIdx]\n\n tmpClassifier = copy.deepcopy(localClassifier)\n tmpClassifier.train(train)\n\n curDFList = []\n for x in test:\n v = tmpClassifier.predictScore(x[0])\n curDFList.append(v['pos'])\n\n for i in range(len(test)):\n localDFList[testIdx[i]] = curDFList[i]\n assert(countTruth(lambda x: np.isnan(x), localDFList) == 0)\n\n #--- train SVC!!\n #- prepare X\n X = np.hstack(\n [np.matrix(globalDFList).T,\n np.matrix(localDFList).T])\n metaClassifier = LinearSVC(\n loss='l2', penalty='l1', dual=False, tol=1e-6,\n random_state=0)\n metaClassifier.fit(X, y)\n trainLog += \"Trained a meta classifier:\\n\"\n coef = metaClassifier.coef_[0]\n trainLog += \" coef for (global, local): (%.6f, %.6f)\\n\" % (\n coef[0], coef[1])\n trainLog += \" intercept: %.6f\\n\" % (metaClassifier.intercept_)\n\n #--- train local classifier using all data\n localClassifier.train(binaryLabeledMessageList)\n trainLog += \"Trained a meta classifier\"\n\n elapsed = toc(tt)\n trainLog += \"Time taken for training: %.3f (sec)\\n\" % elapsed\n\n self._metaClassifier = metaClassifier\n self._trainLog = trainLog\n\n #--- learn sigmoid\n yDeci = [self.predictScore(msg)['pos']\n for msg in binaryLabeledMessageList]\n yy = [1 if v == 1 else -1 for v in y]\n [A, B] = platt.SigmoidTrain(yDeci, yy)\n plattModel = [A, B]\n\n self._plattModel = plattModel\n pass", "metadata": "root.DssgBinaryClassifierAdaptiveSVC.train", "header": "['class', 'DssgBinaryClassifierAdaptiveSVC', '(', 'DssgBinaryClassifier', ')', ':', '___EOS___']", "index": 399 }, { "content": "class DssgCategoryClassifier(object):\n\n \"\"\"\n A generic category classifier, which is simply an aggregate of binary\n classifiers.\n \"\"\"\n _classifierDic = {}\n _categoryList = []\n _trainStats = {}\n\n\n\n\n\n\n\n pass # end of class", "metadata": "root.DssgCategoryClassifier", "header": "['module', '___EOS___']", "index": 523 }, { "content": " def __init__(self,\n untrainedBinaryClassifier,\n untrainedBinaryClassifierDic={},\n doCV=True,\n verbose=True,\n ):\n if (len(untrainedBinaryClassifierDic) != 0):\n assert untrainedBinaryClassifier is None\n self._binaryClassifier = untrainedBinaryClassifier\n self._binaryClassifierDic = untrainedBinaryClassifierDic\n self._doCV = doCV\n self._verbose = verbose\n\n self._classifierDic = {}\n self._categoryList = []\n self._trainStats = {}\n pass", "metadata": "root.DssgCategoryClassifier.__init__", "header": "['class', 'DssgCategoryClassifier', '(', 'object', ')', ':', '___EOS___']", "index": 536 }, { "content": " def train(self, messageList):\n \"\"\"\n messageList is a list of message in dictionary. Major keys are 'title', 'description', and 'categories', and so on.\n \"\"\"\n binaryClassifierDic = self._binaryClassifierDic\n doCV = self._doCV\n verbose = self._verbose\n\n #--- set up logger.\n logger = logging.getLogger(__name__)\n ch = logging.StreamHandler()\n logger.setLevel(logging.INFO if verbose else logging.WARNING)\n logger.info(\n ' len(binaryClassifierDic) = %d',\n len(binaryClassifierDic))\n\n #--- Empty variables\n classifierDic = {}\n\n #--- extract category list in dataset\n categorySet = set()\n for msg in messageList:\n categorySet.update(msg['categories'])\n #- there might be extra categories in binaryClassifierDic\n categorySet.update(binaryClassifierDic.keys())\n categoryList = sorted(list(categorySet))\n\n #--- for each category, train a binary classifier\n trainStats = {}\n totNTP = 0\n totNFP = 0\n totNTN = 0\n totNFN = 0\n for cat in categoryList:\n logger.info('Category: %s', cat)\n if (len(binaryClassifierDic) != 0):\n binaryClassifier = binaryClassifierDic[cat]\n else:\n binaryClassifier = copy.deepcopy(self._binaryClassifier)\n\n #- turn into a binary labeled data\n dset = []\n for msg in messageList:\n binaryLabel = 'pos' if cat in msg['categories'] else 'neg'\n dset.append((msg, binaryLabel))\n\n #- save stat\n nPos = countTruth(lambda x: x[1] == 'pos', dset)\n nNeg = countTruth(lambda x: x[1] == 'neg', dset)\n assert(len(dset) == nPos + nNeg)\n\n v = float(nPos) / (nPos + nNeg)\n mvAcc = max([v, 1 - v])\n logger.info(\n ' nPos,nNeg = (%d / %d), majority vote acc = %.3f',\n nPos,\n nNeg,\n mvAcc)\n\n statDic = {'nPos': nPos, 'nNeg': nNeg, 'majority vote acc': mvAcc}\n\n #--- run cross validation to estimate performance\n cvResDic = {}\n bContinue = False\n didCV = False\n if (doCV):\n try:\n cvResDic = dssgRunCV(self._binaryClassifier, dset)\n strList = (\n 'nFolds',\n 'mean of accuracy',\n '95% confidence interval',\n 'precision',\n 'recall',\n 'f1')\n msg = '%2d-CV: %s = %.3f, %s = [%.3f, %.3f]\\n' % \\\n (cvResDic[strList[0]], strList[1], cvResDic[strList[1]], strList[\n 2], cvResDic[strList[2]][0], cvResDic[strList[2]][1])\n for i in [1, 3, 4, 5]:\n msg += ' %s = %.3f' % (\n strList[i],\n cvResDic[strList[i]])\n if (i != 5):\n msg += '\\n'\n didCV = True\n except TooSkewedLabelsException:\n msg = 'CV accuracy estimate is not available due to skewed labels. Skipping'\n\n logger.info(' ' + msg)\n\n statDic['CV stat'] = cvResDic\n trainStats[cat] = statDic\n\n #--- build a classifier using all data.\n if (isinstance(binaryClassifier, DssgBinaryClassifierAdaptiveInterpolation) or\n isinstance(binaryClassifier, DssgBinaryClassifierAdaptiveSVC)):\n binaryClassifier.train(dset)\n else:\n if (nPos == 0 or nNeg == 0):\n #- when only one label presents, create a majority vote classifier\n mvClassifier = DssgBinaryClassifierMajorityVote()\n mvClassifier.train(dset)\n binaryClassifier = mvClassifier\n else:\n binaryClassifier.train(dset)\n\n #- report vocabulary\n if (isinstance(binaryClassifier, DssgBinaryClassifierAdaptiveInterpolation) or isinstance(binaryClassifier, DssgBinaryClassifierAdaptiveSVC) or isinstance(binaryClassifier, DssgBinaryClassifierMajorityVote)):\n logger.info(\n ' Can\\'t get nVoca since the classifier is: %s',\n repr(binaryClassifier))\n else:\n nVoca = len(binaryClassifier._vectorizer.getFeatureNameList())\n logger.info(' nVoca = %d', nVoca)\n if (isinstance(binaryClassifier._vectorizer, DssgMultiVectorizer)):\n logger.info(\n ' Vectorizer: %s',\n repr(binaryClassifier._vectorizer))\n\n #- add classifier to classifier dictionary.\n classifierDic[cat] = binaryClassifier\n\n logger.info(' type = %s', str(type(binaryClassifier)))\n if (didCV):\n totNTP += statDic['CV stat']['nTP']\n totNFP += statDic['CV stat']['nFP']\n totNTN += statDic['CV stat']['nTN']\n totNFN += statDic['CV stat']['nFN']\n\n if (doCV):\n didCVCategoryList = []\n for cat, v in trainStats.iteritems():\n if (len(v['CV stat']) != 0):\n didCVCategoryList.append(cat)\n logger.info('DID CV for categories: %s', str(didCVCategoryList))\n\n meanF1 = np.mean(\n np.array(map(lambda cat: trainStats[cat]['CV stat']['f1'], didCVCategoryList)))\n logger.info('Overall mean F1 = %.3f', meanF1)\n\n totPrecision = float(totNTP) / (totNTP + totNFP)\n totRecall = float(totNTP) / (totNTP + totNFN)\n logger.info(\n 'Overall aggregate prec = %.3f, recall = %.3f, F1 = %.3f',\n totPrecision, totRecall, sp.stats.hmean([totPrecision, totRecall]))\n\n self._classifierDic = classifierDic\n self._categoryList = categoryList\n self._trainStats = trainStats\n pass", "metadata": "root.DssgCategoryClassifier.train", "header": "['class', 'DssgCategoryClassifier', '(', 'object', ')', ':', '___EOS___']", "index": 560 } ]

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[ { "content": "def upload(sts, path, name):\n ret = sts.get_pending_fw()\n if ret != '':\n print('Deleting exsisting FW on appliance: ', ret['fileName'])\n sts.delete_appliance_fw()\n f, e = os.path.splitext(name)\n ret = sts.upload_fw(path, name)\n print('Upploaded FW: %s Version: %s Reboot Required: %s' % (name,\n ret['version'], ret['rebootRequired']))\n ret = sts.get_pending_fw()\n if ret == '':\n print('ERROR: Can not locate fw upgrade')\n sys.exit()\n print(ret['fileName'])\n ret = sts.upgrade_appliance_fw(ret['fileName'])\n pprint(ret)", "metadata": "root.upload", "header": "['module', '___EOS___']", "index": 66 } ]

[ { "span": "f,", "start_line": 71, "start_column": 4, "end_line": 71, "end_column": 5 }, { "span": "e ", "start_line": 71, "start_column": 7, "end_line": 71, "end_column": 8 } ]

[]

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[ { "content": " def test_getTransactionId(self):\n app = \"testapp\"\n id = self.zk.get_transaction_id(app)\n self.assertTrue(id > 0)", "metadata": "root.TestZKTransaction.test_getTransactionId", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 12 }, { "content": " def test_locksimple(self):\n app = \"testapp\"\n key = \"root\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_locksimple", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 17 }, { "content": " def test_lockpathkey(self):\n app = \"testapp\"\n key = \"/root/child\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_lockpathkey", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 27 }, { "content": " def test_lockspecialcharapp(self):\n app = \"!@#$%^&*()-=_+[]{}\\\\|~`;:\\\"',.<>/?\"\n key = \"!@#$%^&*()-=_+[]{}\\\\|~`;:\\\"',.<>/?\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_lockspecialcharapp", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 37 }, { "content": " def test_locklongkey(self):\n app = \"testapp\"\n key = \"/root/child/looooooooooooooooooooooooooooooooooooooong\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_locklongkey", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 47 }, { "content": " def test_locktwice(self):\n app = \"testapp\"\n key = \"root\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_locktwice", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 57 }, { "content": " def test_lockdifferentkey(self):\n app = \"testapp\"\n key = \"root\"\n key2 = \"root2\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n try:\n ret = self.zk.acquire_lock(app, txid, key2)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_DIFFERENT_ROOTKEY, e.getType())\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_lockdifferentkey", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 69 }, { "content": " def test_lockafterrelease(self):\n app = \"testapp\"\n key = \"root\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)\n try:\n ret = self.zk.acquire_lock(app, txid, key)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_INVALID, e.getType())", "metadata": "root.TestZKTransaction.test_lockafterrelease", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 86 }, { "content": " def test_lock1000(self):\n app = \"testapp\"\n key = \"root\"\n for ii in range(1,1000):\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_lock1000", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 113 }, { "content": " def test_releasewithoutlock(self):\n app = \"testapp\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.release_lock(app, txid)\n self.assertFalse(ret)", "metadata": "root.TestZKTransaction.test_releasewithoutlock", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 135 }, { "content": " def test_releasedifferentkey(self):\n app = \"testapp\"\n key = \"root\"\n key2 = \"root2\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n try:\n ret = self.zk.release_lock(app, txid, key2)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_DIFFERENT_ROOTKEY, e.getType())\n ret = self.zk.release_lock(app, txid, key)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.test_releasedifferentkey", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 142 }, { "content": " def test_generateid(self):\n app = \"testapp\"\n key = \"root\"\n (id, block) = self.zk.generateIDBlock(app, key)\n print \"id=%d, block=%d\" % (id, block)\n self.assertTrue(id >= 0)\n self.assertTrue(block > 0)", "metadata": "root.TestZKTransaction.test_generateid", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 159 }, { "content": " def test_generateid_pathkey(self):\n app = \"testapp\"\n key = \"/root/child\"\n (id, block) = self.zk.generateIDBlock(app, key)\n print \"id=%d, block=%d\" % (id, block)\n self.assertTrue(id >= 0)\n self.assertTrue(block > 0)", "metadata": "root.TestZKTransaction.test_generateid_pathkey", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 167 }, { "content": " def test_generateid_specialcharacterkey(self):\n app = \"testapp\"\n key = \"!@#$%^&*()-=_+[]{}\\\\|~`;:\\\"',.<>/?\"\n (id, block) = self.zk.generateIDBlock(app, key)\n print \"id=%d, block=%d\" % (id, block)\n self.assertTrue(id >= 0)\n self.assertTrue(block > 0)", "metadata": "root.TestZKTransaction.test_generateid_specialcharacterkey", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 175 }, { "content": " def test_generateid_twoblocks(self):\n app = \"testapp\"\n key = \"root\"\n (id, block) = self.zk.generateIDBlock(app, key)\n print \"id=%d, block=%d\" % (id, block)\n self.assertTrue(id >= 0)\n self.assertTrue(block > 0)\n (nextid, block) = self.zk.generateIDBlock(app, key)\n print \"id=%d, block=%d\" % (nextid, block)\n self.assertTrue(nextid >= 0)\n self.assertTrue(nextid > id)\n self.assertTrue(block > 0)", "metadata": "root.TestZKTransaction.test_generateid_twoblocks", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 183 }, { "content": " def __increaseA(self):\n app = \"testapp\"\n key = \"roota\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n while not self.zk.acquire_lock(app, txid, key):\n time.sleep(0.1)\n print \"start increaseA %s\" % threading.currentThread()\n tmp = self.valueA\n # make conflict between threads.\n time.sleep(0.5)\n self.valueA = tmp + 1\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.__increaseA", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 238 }, { "content": " def __increaseB(self):\n app = \"testapp\"\n key = \"rootb\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n while not self.zk.acquire_lock(app, txid, key):\n time.sleep(0.1)\n print \"start increaseB %s\" % threading.currentThread()\n tmp = self.valueB\n # make conflict between threads.\n# time.sleep(0.5)\n self.valueB = tmp + 1\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.__increaseB", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 253 }, { "content": " def __decreaseA(self):\n app = \"testapp\"\n key = \"roota\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n while not self.zk.acquire_lock(app, txid, key):\n time.sleep(0.1)\n print \"start decreaseA %s\" % threading.currentThread()\n tmp = self.valueA\n # make conflict between threads.\n time.sleep(0.5)\n self.valueA = tmp - 1\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.__decreaseA", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 268 }, { "content": " def __decreaseB(self):\n app = \"testapp\"\n key = \"rootb\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n while not self.zk.acquire_lock(app, txid, key):\n time.sleep(0.1)\n print \"start decreaseB %s\" % threading.currentThread()\n tmp = self.valueB\n # make conflict between threads.\n# time.sleep(0.5)\n self.valueB = tmp - 1\n ret = self.zk.release_lock(app, txid)\n self.assertTrue(ret)", "metadata": "root.TestZKTransaction.__decreaseB", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 283 }, { "content": " def __lockonlyB(self):\n app = \"testapp\"\n key = \"rootb\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n while not self.zk.acquire_lock(app, txid, key):\n time.sleep(0.1)", "metadata": "root.TestZKTransaction.__lockonlyB", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 298 }, { "content": " def test_gcsimple(self):\n # timeout very fast\n# self.zk.stopGC()\n zkappscale.zktransaction.TX_TIMEOUT = 1\n zkappscale.zktransaction.GC_INTERVAL = 1\n# self.zk.setRollbackFunction(self.__rollbackReceiver)\n # restart gc thread\n self.keylist = None\n self.zk.startGC()\n\n app = \"testapp\"\n key = \"gctestkey\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n # wait for gc\n time.sleep(5)\n self.assertTrue(self.zk.is_blacklisted(app, txid))\n try:\n self.zk.release_lock(app, txid, key)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_EXPIRED, e.getType())\n try:\n self.zk.acquire_lock(app, txid, key)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_EXPIRED, e.getType())\n\n# self.assertEqual(txid, self.txid)\n# self.assertEqual(key, self.rootkey)\n# self.assertEqual([], self.keylist)\n\n # revert settings\n# self.zk.stopGC()\n zkappscale.zktransaction.TX_TIMEOUT = 30\n zkappscale.zktransaction.GC_INTERVAL = 30\n# self.zk.setRollbackFunction(None)\n self.zk.startGC()", "metadata": "root.TestZKTransaction.test_gcsimple", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 306 }, { "content": " def test_gcwithkeylist(self):\n # timeout very fast\n# self.zk.stopGC()\n zkappscale.zktransaction.TX_TIMEOUT = 1\n zkappscale.zktransaction.GC_INTERVAL = 1\n# self.zk.setRollbackFunction(self.__rollbackReceiver)\n # restart gc thread\n self.keylist = None\n self.zk.startGC()\n\n app = \"testapp\"\n key = \"gctestkey\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n vid = 100L\n self.zk.register_updated_key(app, txid, vid, key + \"/a\")\n # wait for gc\n time.sleep(5)\n self.assertTrue(self.zk.is_blacklisted(app, txid))\n try:\n self.zk.release_lock(app, txid, key)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_EXPIRED, e.getType())\n try:\n self.zk.acquire_lock(app, txid, key)\n self.fail()\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_EXPIRED, e.getType())\n\n# self.assertEqual(app, self.app_id)\n# self.assertEqual(txid, self.txid)\n# self.assertEqual(key, self.rootkey)\n# self.assertTrue(self.keylist.index(\"a\") >= 0)\n# self.assertTrue(self.keylist.index(\"b\") >= 0)\n\n # revert settings\n# self.zk.stopGC()\n zkappscale.zktransaction.TX_TIMEOUT = 30\n zkappscale.zktransaction.GC_INTERVAL = 30\n# self.zk.setRollbackFunction(None)\n self.zk.startGC()", "metadata": "root.TestZKTransaction.test_gcwithkeylist", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 349 }, { "content": " def test_rollback(self):\n app = \"testapp\"\n key = \"root\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n ret = self.zk.notify_failed_transaction(app, txid)\n self.assertTrue(ret)\n self.assertTrue(self.zk.is_blacklisted(app, txid))\n try:\n ret = self.zk.release_lock(app, txid)\n self.fail\n except zkappscale.zktransaction.ZKTransactionException as e:\n print e\n self.assertEqual(zkappscale.zktransaction.ZKTransactionException.TYPE_EXPIRED, e.getType())", "metadata": "root.TestZKTransaction.test_rollback", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 435 }, { "content": " def test_updateafterrollback(self):\n app = \"testapp\"\n key = \"root\"\n txid = self.zk.get_transaction_id(app)\n self.assertTrue(txid > 0)\n ret = self.zk.acquire_lock(app, txid, key)\n self.assertTrue(ret)\n vid = 0L\n self.zk.register_updated_key(app, txid, vid, key + \"/a\")\n ret = self.zk.notify_failed_transaction(app, txid)\n self.assertTrue(ret)\n self.assertTrue(self.zk.is_blacklisted(app, txid))\n\n # update value after rollback\n txid2 = self.zk.get_transaction_id(app)\n self.assertTrue(txid2 > 0)\n ret = self.zk.acquire_lock(app, txid2, key)\n self.assertTrue(ret)\n # get previous valid id\n ret = self.zk.get_valid_transaction_id(app, txid, key + \"/a\")\n self.assertEqual(vid, ret)\n # update previous valid id\n vid = 100L\n self.zk.register_updated_key(app, txid2, vid, key + \"/a\")\n # try to get updated previous valid id\n ret = self.zk.get_valid_transaction_id(app, txid, key + \"/a\")\n self.assertEqual(vid, ret)\n self.assertTrue(self.zk.release_lock(app, txid2))", "metadata": "root.TestZKTransaction.test_updateafterrollback", "header": "['class', 'TestZKTransaction', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 452 } ]

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[]

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[ { "content": "import collada\nimport sys\nimport traceback\n\nprint 'Attempting to load file %s' % sys.argv[1]\n\ntry:\n col = collada.Collada(sys.argv[1], \\\n ignore=[collada.DaeUnsupportedError, collada.DaeBrokenRefError])\nexcept:\n traceback.print_exc()\n print\n print \"Failed to load collada file.\"\n sys.exit(1)\n\nprint\nprint 'Successfully loaded collada file.'\nprint 'There were %d errors' % len(col.errors)\n\nfor e in col.errors:\n print e\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "except:", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 7 } ]

[]

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[ { "content": " def next(self):\n retval = self.func(self.obj)\n if retval == None:\n raise StopIteration()\n return retval", "metadata": "root.DataIterator.next", "header": "['class', 'DataIterator', '(', 'object', ')', ':', '___EOS___']", "index": 74 }, { "content": " def __init__(self, connection, statement, *types, **kwargs):\n global statement_number\n if connection == None or connection.c == None:\n raise InterfaceError(\"connection not provided\")\n try:\n statement_number_lock.acquire()\n self._statement_number = statement_number\n statement_number += 1\n finally:\n statement_number_lock.release()\n self.c = connection.c\n self._portal_name = None\n self._statement_name = kwargs.get(\"statement_name\", \"pg8000_statement_%s\" % self._statement_number)\n self._row_desc = None\n self._cached_rows = []\n self._ongoing_row_count = 0\n self._command_complete = True\n self._parse_row_desc = self.c.parse(self._statement_name, statement, types)\n self._lock = threading.RLock()", "metadata": "root.PreparedStatement.__init__", "header": "['class', 'PreparedStatement', '(', 'object', ')', ':', '___NEWLINE___', '___NL___', '##', '___NL___', '# Determines the number of rows to read from the database server at once.', '___NL___', '# Reading more rows increases performance at the cost of memory. The', '___NL___', '# default value is 100 rows. The affect of this parameter is transparent.', '___NL___', '# That is, the library reads more rows when the cache is empty', '___NL___', '# automatically.', '___NL___', '# <p>', '___NL___', '# Stability: Added in v1.00, stability guaranteed for v1.xx. It is', '___NL___', '# possible that implementation changes in the future could cause this', '___NL___', '# parameter to be ignored.', '___NL___', '___EOS___']", "index": 120 }, { "content": " def _getRowDescription(self):\n if self._row_desc == None:\n return None\n return self._row_desc.fields", "metadata": "root.PreparedStatement._getRowDescription", "header": "['class', 'PreparedStatement', '(', 'object', ')', ':', '___NEWLINE___', '___NL___', '##', '___NL___', '# Determines the number of rows to read from the database server at once.', '___NL___', '# Reading more rows increases performance at the cost of memory. The', '___NL___', '# default value is 100 rows. The affect of this parameter is transparent.', '___NL___', '# That is, the library reads more rows when the cache is empty', '___NL___', '# automatically.', '___NL___', '# <p>', '___NL___', '# Stability: Added in v1.00, stability guaranteed for v1.xx. It is', '___NL___', '# possible that implementation changes in the future could cause this', '___NL___', '# parameter to be ignored.', '___NL___', '___EOS___']", "index": 148 }, { "content": " def read_dict(self):\n row = self._fetch()\n if row == None:\n return row\n retval = {}\n for i in range(len(self._row_desc.fields)):\n col_name = self._row_desc.fields[i]['name']\n if retval.has_key(col_name):\n raise InterfaceError(\"cannot return dict of row when two columns have the same name (%r)\" % (col_name,))\n retval[col_name] = row[i]\n return retval", "metadata": "root.PreparedStatement.read_dict", "header": "['class', 'PreparedStatement', '(', 'object', ')', ':', '___NEWLINE___', '___NL___', '##', '___NL___', '# Determines the number of rows to read from the database server at once.', '___NL___', '# Reading more rows increases performance at the cost of memory. The', '___NL___', '# default value is 100 rows. The affect of this parameter is transparent.', '___NL___', '# That is, the library reads more rows when the cache is empty', '___NL___', '# automatically.', '___NL___', '# <p>', '___NL___', '# Stability: Added in v1.00, stability guaranteed for v1.xx. It is', '___NL___', '# possible that implementation changes in the future could cause this', '___NL___', '# parameter to be ignored.', '___NL___', '___EOS___']", "index": 251 }, { "content": " def __init__(self, connection, statement):\n if connection == None or connection.c == None:\n raise InterfaceError(\"connection not provided\")\n self.c = connection.c\n self._row_desc = None\n self._cached_rows = []\n self._ongoing_row_count = -1\n self._command_complete = True\n self.statement = statement\n self._lock = threading.RLock()", "metadata": "root.SimpleStatement.__init__", "header": "['class', 'SimpleStatement', '(', 'PreparedStatement', ')', ':', '___EOS___']", "index": 299 }, { "content": " def require_stmt(func):\n def retval(self, *args, **kwargs):\n if self._stmt == None:\n raise ProgrammingError(\"attempting to use unexecuted cursor\")\n return func(self, *args, **kwargs)\n return retval", "metadata": "root.Cursor.require_stmt", "header": "['class', 'Cursor', '(', 'object', ')', ':', '___EOS___']", "index": 365 }, { "content": " def _getRowDescription(self):\n if self._stmt == None:\n return None\n return self._stmt.row_description", "metadata": "root.Cursor._getRowDescription", "header": "['class', 'Cursor', '(', 'object', ')', ':', '___EOS___']", "index": 373 }, { "content": "class Connection(Cursor):\n\n ##\n # An event handler that is fired when NOTIFY occurs for a notification that\n # has been LISTEN'd for. The value of this property is a\n # util.MulticastDelegate. A callback can be added by using\n # connection.NotificationReceived += SomeMethod. The method will be called\n # with a single argument, an object that has properties: backend_pid,\n # condition, and additional_info. Callbacks can be removed with the -=\n # operator.\n # <p>\n # Stability: Added in v1.03, stability guaranteed for v1.xx.\n NotificationReceived = property(\n lambda self: getattr(self.c, \"NotificationReceived\"),\n lambda self, value: setattr(self.c, \"NotificationReceived\", value)\n )\n\n ##\n # An event handler that is fired when the database server issues a notice.\n # The value of this property is a util.MulticastDelegate. A callback can\n # be added by using connection.NotificationReceived += SomeMethod. The\n # method will be called with a single argument, an object that has\n # properties: severity, code, msg, and possibly others (detail, hint,\n # position, where, file, line, and routine). Callbacks can be removed with\n # the -= operator.\n # <p>\n # Stability: Added in v1.03, stability guaranteed for v1.xx.\n NoticeReceived = property(\n lambda self: getattr(self.c, \"NoticeReceived\"),\n lambda self, value: setattr(self.c, \"NoticeReceived\", value)\n )\n\n ##\n # An event handler that is fired when a runtime configuration option is\n # changed on the server. The value of this property is a\n # util.MulticastDelegate. A callback can be added by using\n # connection.NotificationReceived += SomeMethod. Callbacks can be removed\n # with the -= operator. The method will be called with a single argument,\n # an object that has properties \"key\" and \"value\".\n # <p>\n # Stability: Added in v1.03, stability guaranteed for v1.xx.\n ParameterStatusReceived = property(\n lambda self: getattr(self.c, \"ParameterStatusReceived\"),\n lambda self, value: setattr(self.c, \"ParameterStatusReceived\", value)\n )\n\n ##\n # Begins a new transaction.\n # <p>\n # Stability: Added in v1.00, stability guaranteed for v1.xx.\n\n\n ##\n # Commits the running transaction.\n # <p>\n # Stability: Added in v1.00, stability guaranteed for v1.xx.\n\n ##\n # Rolls back the running transaction.\n # <p>\n # Stability: Added in v1.00, stability guaranteed for v1.xx.\n\n ##\n # Closes an open connection.\n\n is_closed = property(lambda self: self.c == None)\n\n ##\n # Return the fileno of the underlying socket for this connection.\n # <p>\n # Stability: Added in v1.07, stability guaranteed for v1.xx.\n\n ##\n # Poll the underlying socket for this connection and sync if there is data\n # waiting to be read. This has the effect of flushing asynchronous\n # messages from the backend. Returns True if messages were read, False\n # otherwise.\n # <p>\n # Stability: Added in v1.07, stability guaranteed for v1.xx.\n\n ##\n # Return the server_version as reported from the connected server.\n # Raises InterfaceError if no version has been reported from the server.\n", "metadata": "root.Connection", "header": "['module', '___EOS___']", "index": 522 } ]

[ { "span": "retval == None:", "start_line": 76, "start_column": 11, "end_line": 76, "end_column": 25 }, { "span": "connection == None ", "start_line": 122, "start_column": 11, "end_line": 122, "end_column": 29 }, { "span": "connection.c == None:", "start_line": 122, "start_column": 33, "end_line": 122, "end_column": 53 }, { "span": "self._row_desc == None:", "start_line": 149, "start_column": 11, "end_line": 149, "end_column": 33 }, { "span": "row == None:", "start_line": 253, "start_column": 11, "end_line": 253, "end_column": 22 }, { "span": "connection == None ", "start_line": 300, "start_column": 11, "end_line": 300, "end_column": 29 }, { "span": "connection.c == None:", "start_line": 300, "start_column": 33, "end_line": 300, "end_column": 53 }, { "span": "self._stmt == None:", "start_line": 367, "start_column": 15, "end_line": 367, "end_column": 33 }, { "span": "self._stmt == None:", "start_line": 374, "start_column": 11, "end_line": 374, "end_column": 29 }, { "span": "self.c == None)", "start_line": 632, "start_column": 38, "end_line": 632, "end_column": 52 } ]

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[ { "content": "# import re\nimport os\nimport json\n\nresources = {}\n# Explanation: http://wiki.dbpedia.org/Downloads2015-04\n# Link to this set: http://downloads.dbpedia.org/2015-04/core-i18n/en/instance-types_en.nt.bz2\nwith open('/Users/pascal/Downloads/instance_types_en.nt') as f: \n for line in f:\n try:\n parts = line.split()\n first_part = parts[0]\n if first_part.count('/') == 4:\n name = first_part.split('/')[-1].replace('_', ' ').lower()[:-1]\n if len(name.split()) > 3:\n continue\n pos = name.find(' ')\n if pos > -1:\n name = name[:pos] \n if 'ontologydesignpatterns' in parts[2]: \n continue\n if 'w3.org' in parts[2]: \n continue\n if name not in resources: \n resources[name] = set() \n resources[name].add(parts[2].split('/')[-1][:-1]) \n except IndexError:\n pass \n\n# resources start with 'http://dbpedia.org/resource/'\n\n# types = set()\n# for name in resources:\n# m = re.search(r'(\\(.+\\))', name)\n# if m:\n# types.add(m.groups()[0].lower()) \n\nstripped_resources = {}\nfor x in resources:\n if any([y in x for y in '0123456789']): \n if '%' not in x: \n continue\n pos = x.find('(') \n if pos > -1:\n stripped_resources[x[:pos].strip()] = list(resources[x])\n else: \n stripped_resources[x.strip()] = list(resources[x])\n\n####################################################################################################################### \n\nfname = os.path.join(os.path.dirname(__file__), 'dbpedia.json')\nwith open(fname, 'w') as f: \n json.dump(stripped_resources, f)\n\n# from ZODB.FileStorage import FileStorage\n# from ZODB.DB import DB\n\n# import transaction\n# from BTrees.OOBTree import OOBTree\n \n# storage = FileStorage('/Users/pascal/GDrive/appear/Data.fs')\n# db = DB(storage)\n# connection = db.open()\n# root = connection.root()\n\n# root['dbpedia'] = OOBTree(stripped_resources)\n# transaction.commit()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "'w3.org' in parts[2]:", "start_line": 21, "start_column": 19, "end_line": 21, "end_column": 39 } ]

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[ { "content": " def run(self, sync):\n start_time = time.time()\n app = sync.app\n remote_change = sync.get('changes/%s?o=DETAILED_LABELS&o=ALL_REVISIONS&o=ALL_COMMITS&o=MESSAGES&o=DETAILED_ACCOUNTS&o=CURRENT_ACTIONS&o=ALL_FILES' % self.change_id)\n # Perform subqueries this task will need outside of the db session\n for remote_commit, remote_revision in remote_change.get('revisions', {}).items():\n remote_comments_data = sync.get('changes/%s/revisions/%s/comments' % (self.change_id, remote_commit))\n remote_revision['_gertty_remote_comments_data'] = remote_comments_data\n remote_conflicts = sync.query(['q=status:open+is:mergeable+conflicts:%s' %\n remote_change['_number']])\n fetches = collections.defaultdict(list)\n parent_commits = set()\n with app.db.getSession() as session:\n change = session.getChangeByID(self.change_id)\n account = session.getAccountByID(remote_change['owner']['_account_id'],\n name=remote_change['owner'].get('name'),\n username=remote_change['owner'].get('username'),\n email=remote_change['owner'].get('email'))\n if not change:\n project = session.getProjectByName(remote_change['project'])\n created = dateutil.parser.parse(remote_change['created'])\n updated = dateutil.parser.parse(remote_change['updated'])\n change = project.createChange(remote_change['id'], account, remote_change['_number'],\n remote_change['branch'], remote_change['change_id'],\n remote_change['subject'], created,\n updated, remote_change['status'],\n topic=remote_change.get('topic'))\n self.log.info(\"Created new change %s in local DB.\", change.id)\n result = ChangeAddedEvent(change)\n else:\n result = ChangeUpdatedEvent(change)\n app.project_cache.clear(change.project)\n self.results.append(result)\n change.owner = account\n if change.status != remote_change['status']:\n change.status = remote_change['status']\n result.status_changed = True\n if remote_change.get('starred'):\n change.starred = True\n else:\n change.starred = False\n change.subject = remote_change['subject']\n change.updated = dateutil.parser.parse(remote_change['updated'])\n change.topic = remote_change.get('topic')\n unseen_conflicts = [x.id for x in change.conflicts]\n for remote_conflict in remote_conflicts:\n conflict_id = remote_conflict['id']\n conflict = session.getChangeByID(conflict_id)\n if not conflict:\n self.log.info(\"Need to sync conflicting change %s for change %s.\",\n conflict_id, change.number)\n sync.submitTask(SyncChangeTask(conflict_id, priority=self.priority))\n else:\n if conflict not in change.conflicts:\n self.log.info(\"Added conflict %s for change %s in local DB.\",\n conflict.number, change.number)\n change.addConflict(conflict)\n self.results.append(ChangeUpdatedEvent(conflict))\n if conflict_id in unseen_conflicts:\n unseen_conflicts.remove(conflict_id)\n for conflict_id in unseen_conflicts:\n conflict = session.getChangeByID(conflict_id)\n self.log.info(\"Deleted conflict %s for change %s in local DB.\",\n conflict.number, change.number)\n change.delConflict(conflict)\n self.results.append(ChangeUpdatedEvent(conflict))\n repo = gitrepo.get_repo(change.project.name, app.config)\n new_revision = False\n for remote_commit, remote_revision in remote_change.get('revisions', {}).items():\n revision = session.getRevisionByCommit(remote_commit)\n # TODO: handle multiple parents\n url = sync.app.config.git_url + change.project.name\n if 'anonymous http' in remote_revision['fetch']:\n ref = remote_revision['fetch']['anonymous http']['ref']\n url = remote_revision['fetch']['anonymous http']['url']\n auth = False\n elif 'http' in remote_revision['fetch']:\n auth = True\n ref = remote_revision['fetch']['http']['ref']\n url = list(urlparse.urlsplit(sync.app.config.url + change.project.name))\n url[1] = '%s:%s@%s' % (\n urlparse.quote_plus(sync.app.config.username),\n urlparse.quote_plus(sync.app.config.password), url[1])\n url = urlparse.urlunsplit(url)\n elif 'ssh' in remote_revision['fetch']:\n ref = remote_revision['fetch']['ssh']['ref']\n url = remote_revision['fetch']['ssh']['url']\n auth = False\n elif 'git' in remote_revision['fetch']:\n ref = remote_revision['fetch']['git']['ref']\n url = remote_revision['fetch']['git']['url']\n auth = False\n else:\n if len(remote_revision['fetch']):\n errMessage = \"No supported fetch method found. Server offers: %s\" % (\n ', '.join(remote_revision['fetch'].keys()))\n else:\n errMessage = \"The server is missing the download-commands plugin.\"\n raise Exception(errMessage)\n if (not revision) or self.force_fetch:\n fetches[url].append('+%(ref)s:%(ref)s' % dict(ref=ref))\n if not revision:\n revision = change.createRevision(remote_revision['_number'],\n remote_revision['commit']['message'], remote_commit,\n remote_revision['commit']['parents'][0]['commit'],\n auth, ref)\n self.log.info(\"Created new revision %s for change %s revision %s in local DB.\",\n revision.key, self.change_id, remote_revision['_number'])\n new_revision = True\n revision.message = remote_revision['commit']['message']\n actions = remote_revision.get('actions', {})\n revision.can_submit = 'submit' in actions\n # TODO: handle multiple parents\n if revision.parent not in parent_commits:\n parent_revision = session.getRevisionByCommit(revision.parent)\n if not parent_revision and change.status not in CLOSED_STATUSES:\n sync._syncChangeByCommit(revision.parent, self.priority)\n self.log.debug(\"Change %s revision %s needs parent commit %s synced\" %\n (change.id, remote_revision['_number'], revision.parent))\n parent_commits.add(revision.parent)\n result.updateRelatedChanges(session, change)\n\n f = revision.getFile('/COMMIT_MSG')\n if f is None:\n f = revision.createFile('/COMMIT_MSG', None,\n None, None, None)\n for remote_path, remote_file in remote_revision['files'].items():\n f = revision.getFile(remote_path)\n if f is None:\n if remote_file.get('binary'):\n inserted = deleted = None\n else:\n inserted = remote_file.get('lines_inserted', 0)\n deleted = remote_file.get('lines_deleted', 0)\n f = revision.createFile(remote_path, remote_file.get('status', 'M'),\n remote_file.get('old_path'),\n inserted, deleted)\n\n remote_comments_data = remote_revision['_gertty_remote_comments_data']\n for remote_file, remote_comments in remote_comments_data.items():\n for remote_comment in remote_comments:\n account = session.getAccountByID(remote_comment['author']['_account_id'],\n name=remote_comment['author'].get('name'),\n username=remote_comment['author'].get('username'),\n email=remote_comment['author'].get('email'))\n comment = session.getCommentByID(remote_comment['id'])\n if not comment:\n # Normalize updated -> created\n created = dateutil.parser.parse(remote_comment['updated'])\n parent = False\n if remote_comment.get('side', '') == 'PARENT':\n parent = True\n fileobj = revision.getFile(remote_file)\n if fileobj is None:\n fileobj = revision.createFile(remote_file, 'M')\n comment = fileobj.createComment(remote_comment['id'], account,\n remote_comment.get('in_reply_to'),\n created,\n parent, remote_comment.get('line'),\n remote_comment['message'])\n self.log.info(\"Created new comment %s for revision %s in local DB.\",\n comment.key, revision.key)\n else:\n if comment.author != account:\n comment.author = account\n new_message = False\n for remote_message in remote_change.get('messages', []):\n if 'author' in remote_message:\n account = session.getAccountByID(remote_message['author']['_account_id'],\n name=remote_message['author'].get('name'),\n username=remote_message['author'].get('username'),\n email=remote_message['author'].get('email'))\n if account.username != app.config.username:\n new_message = True\n else:\n account = session.getSystemAccount()\n message = session.getMessageByID(remote_message['id'])\n if not message:\n revision = session.getRevisionByNumber(change, remote_message.get('_revision_number', 1))\n if revision:\n # Normalize date -> created\n created = dateutil.parser.parse(remote_message['date'])\n message = revision.createMessage(remote_message['id'], account, created,\n remote_message['message'])\n self.log.info(\"Created new review message %s for revision %s in local DB.\", message.key, revision.key)\n else:\n self.log.info(\"Unable to create new review message for revision %s because it is not in local DB (draft?).\", remote_message.get('_revision_number'))\n else:\n if message.author != account:\n message.author = account\n remote_approval_entries = {}\n remote_label_entries = {}\n user_voted = False\n for remote_label_name, remote_label_dict in remote_change.get('labels', {}).items():\n for remote_approval in remote_label_dict.get('all', []):\n if remote_approval.get('value') is None:\n continue\n remote_approval['category'] = remote_label_name\n key = '%s~%s' % (remote_approval['category'], remote_approval['_account_id'])\n remote_approval_entries[key] = remote_approval\n if remote_approval['_account_id'] == sync.account_id and int(remote_approval['value']) != 0:\n user_voted = True\n for key, value in remote_label_dict.get('values', {}).items():\n # +1: \"LGTM\"\n label = dict(value=key,\n description=value,\n category=remote_label_name)\n key = '%s~%s~%s' % (label['category'], label['value'], label['description'])\n remote_label_entries[key] = label\n remote_approval_keys = set(remote_approval_entries.keys())\n remote_label_keys = set(remote_label_entries.keys())\n local_approvals = {}\n local_labels = {}\n user_votes = {}\n for approval in change.approvals:\n if approval.draft and not new_revision:\n # If we have a new revision, we need to delete\n # draft local approvals because they can no longer\n # be uploaded. Otherwise, keep them because we\n # may be about to upload a review. Ignoring an\n # approval here means it will not be deleted.\n # Also keep track of these approvals so we can\n # determine whether we should hold the change\n # later.\n user_votes[approval.category] = approval.value\n # Count draft votes as having voted for the\n # purposes of deciding whether to clear the\n # reviewed flag later.\n user_voted = True\n continue\n key = '%s~%s' % (approval.category, approval.reviewer.id)\n if key in local_approvals:\n # Delete duplicate approvals.\n session.delete(approval)\n else:\n local_approvals[key] = approval\n local_approval_keys = set(local_approvals.keys())\n for label in change.labels:\n key = '%s~%s~%s' % (label.category, label.value, label.description)\n local_labels[key] = label\n local_label_keys = set(local_labels.keys())\n\n for key in local_approval_keys-remote_approval_keys:\n session.delete(local_approvals[key])\n\n for key in local_label_keys-remote_label_keys:\n session.delete(local_labels[key])\n\n for key in remote_approval_keys-local_approval_keys:\n remote_approval = remote_approval_entries[key]\n account = session.getAccountByID(remote_approval['_account_id'],\n name=remote_approval.get('name'),\n username=remote_approval.get('username'),\n email=remote_approval.get('email'))\n change.createApproval(account,\n remote_approval['category'],\n remote_approval['value'])\n self.log.info(\"Created approval for change %s in local DB.\", change.id)\n user_value = user_votes.get(remote_approval['category'], 0)\n if user_value > 0 and remote_approval['value'] < 0:\n # Someone left a negative vote after the local\n # user created a draft positive vote. Hold the\n # change so that it doesn't look like the local\n # user is ignoring negative feedback.\n if not change.held:\n change.held = True\n result.held_changed = True\n self.log.info(\"Setting change %s to held due to negative review after positive\", change.id)\n\n for key in remote_label_keys-local_label_keys:\n remote_label = remote_label_entries[key]\n change.createLabel(remote_label['category'],\n remote_label['value'],\n remote_label['description'])\n\n for key in remote_approval_keys.intersection(local_approval_keys):\n local_approval = local_approvals[key]\n remote_approval = remote_approval_entries[key]\n local_approval.value = remote_approval['value']\n # For the side effect of updating account info:\n account = session.getAccountByID(remote_approval['_account_id'],\n name=remote_approval.get('name'),\n username=remote_approval.get('username'),\n email=remote_approval.get('email'))\n\n remote_permitted_entries = {}\n for remote_label_name, remote_label_values in remote_change.get('permitted_labels', {}).items():\n for remote_label_value in remote_label_values:\n remote_label = dict(category=remote_label_name,\n value=remote_label_value)\n key = '%s~%s' % (remote_label['category'], remote_label['value'])\n remote_permitted_entries[key] = remote_label\n remote_permitted_keys = set(remote_permitted_entries.keys())\n local_permitted = {}\n for permitted in change.permitted_labels:\n key = '%s~%s' % (permitted.category, permitted.value)\n local_permitted[key] = permitted\n local_permitted_keys = set(local_permitted.keys())\n\n for key in local_permitted_keys-remote_permitted_keys:\n session.delete(local_permitted[key])\n\n for key in remote_permitted_keys-local_permitted_keys:\n remote_permitted = remote_permitted_entries[key]\n change.createPermittedLabel(remote_permitted['category'],\n remote_permitted['value'])\n\n if not user_voted:\n # Only consider changing the reviewed state if we don't have a vote\n if new_revision or new_message:\n if change.reviewed:\n change.reviewed = False\n result.review_flag_changed = True\n app.project_cache.clear(change.project)\n for url, refs in fetches.items():\n self.log.debug(\"Fetching from %s with refs %s\", url, refs)\n try:\n repo.fetch(url, refs)\n except Exception:\n # Backwards compat with GitPython before the multi-ref fetch\n # patch.\n # (https://github.com/gitpython-developers/GitPython/pull/170)\n for ref in refs:\n self.log.debug(\"git fetch %s %s\" % (url, ref))\n repo.fetch(url, ref)\n end_time = time.time()\n total_time = end_time - start_time\n self.log.info(\"Synced change %s in %0.5f seconds.\", self.change_id, total_time)", "metadata": "root.SyncChangeTask.run", "header": "['class', 'SyncChangeTask', '(', 'Task', ')', ':', '___EOS___']", "index": 538 }, { "content": " def run(self, sync):\n app = sync.app\n with app.db.getSession() as session:\n projects = session.getProjects(subscribed=True)\n for project in projects:\n try:\n missing = False\n try:\n repo = gitrepo.get_repo(project.name, app.config)\n except gitrepo.GitCloneError:\n missing = True\n if missing or app.fetch_missing_refs:\n sync.submitTask(CheckRevisionsTask(project.key,\n priority=LOW_PRIORITY))\n except Exception:\n self.log.exception(\"Exception checking repo %s\" %\n (project.name,))", "metadata": "root.CheckReposTask.run", "header": "['class', 'CheckReposTask', '(', 'Task', ')', ':', '___NEWLINE___', '# on startup, check all projects', '___NL___', '# for any subscribed project withot a local repo or if', '___NL___', '# --fetch-missing-refs is supplied, check all local changes for', '___NL___', '# missing refs, and sync the associated changes', '___NL___', '___EOS___']", "index": 880 } ]

[ { "span": "account ", "start_line": 818, "start_column": 16, "end_line": 818, "end_column": 23 }, { "span": "repo ", "start_line": 888, "start_column": 20, "end_line": 888, "end_column": 24 } ]

[]

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[ { "content": "#\n# growler/middleware/logger.py\n#\n# flake8: noqa\n#\n\nimport logging\nimport asyncio\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Logger:\n\n # Not pep8 but much better!\n DEFAULT = '/033[30m'\n RED = '/033[31m'\n GREEN = '/033[32m'\n YELLOW = '/033[33m'\n BLUE = '/033[34m'\n MAGENTA = '/033[35m'\n CYAN = '/033[36m'\n WHITE = '/033[37m'\n\n\n\n\n\n\n", "metadata": "root.Logger", "header": "['module', '___EOS___']", "index": 10 }, { "content": " @classmethod\n def c(cls, color, msg):\n return \"%s%s%s\" % (color, msg, cls.DEFAULT)", "metadata": "root.Logger.c", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 22 }, { "content": " def __init__(self):\n pass", "metadata": "root.Logger.__init__", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 26 }, { "content": " def info(self, message):\n logging.info(c(self.CYAN, \" info \", message))", "metadata": "root.Logger.info", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 29 }, { "content": " def warn(self, message):\n logging.warn(c(self.YELLOW, \" WARNING \", message))", "metadata": "root.Logger.warn", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 32 }, { "content": " def error(self, message):\n logging.error(\" ERROR \", message)", "metadata": "root.Logger.error", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 35 }, { "content": " def critical_error(self, message):\n logging.error(\" ERROR \", message)", "metadata": "root.Logger.critical_error", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 38 }, { "content": " def __call__(self, req, res):\n logging.info(\"Connection from {}\".format(req.ip))\n req.log = self", "metadata": "root.Logger.__call__", "header": "['class', 'Logger', ':', '___NEWLINE___', '___NL___', '# Not pep8 but much better!', '___NL___', '___EOS___']", "index": 41 } ]

[ { "span": "import asyncio", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 14 } ]

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[ { "content": " def _do_links(self, text):\n \"\"\"Turn Markdown link shortcuts into XHTML <a> and <img> tags.\n\n This is a combination of Markdown.pl's _DoAnchors() and\n _DoImages(). They are done together because that simplified the\n approach. It was necessary to use a different approach than\n Markdown.pl because of the lack of atomic matching support in\n Python's regex engine used in $g_nested_brackets.\n \"\"\"\n MAX_LINK_TEXT_SENTINEL = 3000 # markdown2 issue 24\n\n # `anchor_allowed_pos` is used to support img links inside\n # anchors, but not anchors inside anchors. An anchor's start\n # pos must be `>= anchor_allowed_pos`.\n anchor_allowed_pos = 0\n\n curr_pos = 0\n while True: # Handle the next link.\n # The next '[' is the start of:\n # - an inline anchor: [text](url \"title\")\n # - a reference anchor: [text][id]\n # - an inline img: ![text](url \"title\")\n # - a reference img: ![text][id]\n # - a footnote ref: [^id]\n # (Only if 'footnotes' extra enabled)\n # - a footnote defn: [^id]: ...\n # (Only if 'footnotes' extra enabled) These have already\n # been stripped in _strip_footnote_definitions() so no\n # need to watch for them.\n # - a link definition: [id]: url \"title\"\n # These have already been stripped in\n # _strip_link_definitions() so no need to watch for them.\n # - not markup: [...anything else...\n try:\n start_idx = text.index('[', curr_pos)\n except ValueError:\n break\n text_length = len(text)\n\n # Find the matching closing ']'.\n # Markdown.pl allows *matching* brackets in link text so we\n # will here too. Markdown.pl *doesn't* currently allow\n # matching brackets in img alt text -- we'll differ in that\n # regard.\n bracket_depth = 0\n for p in range(start_idx+1, min(start_idx+MAX_LINK_TEXT_SENTINEL,\n text_length)):\n ch = text[p]\n if ch == ']':\n bracket_depth -= 1\n if bracket_depth < 0:\n break\n elif ch == '[':\n bracket_depth += 1\n else:\n # Closing bracket not found within sentinel length.\n # This isn't markup.\n curr_pos = start_idx + 1\n continue\n link_text = text[start_idx+1:p]\n\n # Possibly a footnote ref?\n if \"footnotes\" in self.extras and link_text.startswith(\"^\"):\n normed_id = re.sub(r'\\W', '-', link_text[1:])\n if normed_id in self.footnotes:\n self.footnote_ids.append(normed_id)\n result = '<sup class=\"footnote-ref\" id=\"fnref-%s\">' \\\n '<a href=\"#fn-%s\">%s</a></sup>' \\\n % (normed_id, normed_id, len(self.footnote_ids))\n text = text[:start_idx] + result + text[p+1:]\n else:\n # This id isn't defined, leave the markup alone.\n curr_pos = p+1\n continue\n\n # Now determine what this is by the remainder.\n p += 1\n if p == text_length:\n return text\n\n # Inline anchor or img?\n if text[p] == '(': # attempt at perf improvement\n url, title, url_end_idx = self._extract_url_and_title(text, p)\n if url is not None:\n # Handle an inline anchor or img.\n is_img = start_idx > 0 and text[start_idx-1] == \"!\"\n if is_img:\n start_idx -= 1\n\n # We've got to encode these to avoid conflicting\n # with italics/bold.\n url = url.replace('*', self._escape_table['*']) \\\n .replace('_', self._escape_table['_'])\n if title:\n title_str = ' title=\"%s\"' % (\n _xml_escape_attr(title)\n .replace('*', self._escape_table['*'])\n .replace('_', self._escape_table['_']))\n else:\n title_str = ''\n if is_img:\n img_class_str = self._html_class_str_from_tag(\"img\")\n result = '<img src=\"%s\" alt=\"%s\"%s%s%s' \\\n % (url.replace('\"', '&quot;'),\n _xml_escape_attr(link_text),\n title_str, img_class_str, self.empty_element_suffix)\n if \"smarty-pants\" in self.extras:\n result = result.replace('\"', self._escape_table['\"'])\n curr_pos = start_idx + len(result)\n text = text[:start_idx] + result + text[url_end_idx:]\n elif start_idx >= anchor_allowed_pos:\n result_head = '<a href=\"%s\"%s>' % (url, title_str)\n result = '%s%s</a>' % (result_head, link_text)\n if \"smarty-pants\" in self.extras:\n result = result.replace('\"', self._escape_table['\"'])\n # <img> allowed from curr_pos on, <a> from\n # anchor_allowed_pos on.\n curr_pos = start_idx + len(result_head)\n anchor_allowed_pos = start_idx + len(result)\n text = text[:start_idx] + result + text[url_end_idx:]\n else:\n # Anchor not allowed here.\n curr_pos = start_idx + 1\n continue\n\n # Reference anchor or img?\n else:\n match = self._tail_of_reference_link_re.match(text, p)\n if match:\n # Handle a reference-style anchor or img.\n is_img = start_idx > 0 and text[start_idx-1] == \"!\"\n if is_img:\n start_idx -= 1\n link_id = match.group(\"id\").lower()\n if not link_id:\n link_id = link_text.lower() # for links like [this][]\n if link_id in self.urls:\n url = self.urls[link_id]\n # We've got to encode these to avoid conflicting\n # with italics/bold.\n url = url.replace('*', self._escape_table['*']) \\\n .replace('_', self._escape_table['_'])\n title = self.titles.get(link_id)\n if title:\n before = title\n title = _xml_escape_attr(title) \\\n .replace('*', self._escape_table['*']) \\\n .replace('_', self._escape_table['_'])\n title_str = ' title=\"%s\"' % title\n else:\n title_str = ''\n if is_img:\n img_class_str = self._html_class_str_from_tag(\"img\")\n result = '<img src=\"%s\" alt=\"%s\"%s%s%s' \\\n % (url.replace('\"', '&quot;'),\n link_text.replace('\"', '&quot;'),\n title_str, img_class_str, self.empty_element_suffix)\n if \"smarty-pants\" in self.extras:\n result = result.replace('\"', self._escape_table['\"'])\n curr_pos = start_idx + len(result)\n text = text[:start_idx] + result + text[match.end():]\n elif start_idx >= anchor_allowed_pos:\n result = '<a href=\"%s\"%s>%s</a>' \\\n % (url, title_str, link_text)\n result_head = '<a href=\"%s\"%s>' % (url, title_str)\n result = '%s%s</a>' % (result_head, link_text)\n if \"smarty-pants\" in self.extras:\n result = result.replace('\"', self._escape_table['\"'])\n # <img> allowed from curr_pos on, <a> from\n # anchor_allowed_pos on.\n curr_pos = start_idx + len(result_head)\n anchor_allowed_pos = start_idx + len(result)\n text = text[:start_idx] + result + text[match.end():]\n else:\n # Anchor not allowed here.\n curr_pos = start_idx + 1\n else:\n # This id isn't defined, leave the markup alone.\n curr_pos = match.end()\n continue\n\n # Otherwise, it isn't markup.\n curr_pos = start_idx + 1\n\n return text", "metadata": "root.Markdown._do_links", "header": "['class', 'Markdown', '(', 'object', ')', ':', '___NEWLINE___', '# The dict of \"extras\" to enable in processing -- a mapping of', '___NL___', '# extra name to argument for the extra. Most extras do not have an', '___NL___', '# argument, in which case the value is None.', '___NL___', '#', '___NL___', '# This can be set via (a) subclassing and (b) the constructor', '___NL___', '# \"extras\" argument.', '___NL___', '___EOS___']", "index": 1191 } ]

[ { "span": "result ", "start_line": 1353, "start_column": 28, "end_line": 1353, "end_column": 34 } ]

[ { "span": "result ", "start_line": 1356, "start_column": 28, "end_line": 1356, "end_column": 34 } ]

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[ { "content": "#!/usr/bin/python2.7\n# -*- coding: utf-8 -*-\n# vim:ts=4:sw=4:softtabstop=4:smarttab:expandtab\n\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n\n# http://www.apache.org/licenses/LICENSE-2.0\n\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nfrom __future__ import print_function\nfrom __future__ import unicode_literals\nfrom __future__ import division\n\nimport unittest\n\nfrom pycopia import proctools\nfrom pycopia import crontab\nfrom pycopia import expect\nfrom pycopia import netcat\nfrom pycopia import proctools\n#from pycopia import redir\nfrom pycopia import rsynclib\nfrom pycopia import sshlib\nfrom pycopia import sudo\n#from pycopia import xselection\n\n\n\n\n\nif __name__ == '__main__':\n unittest.main()\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _sub_function():\n from pycopia import scheduler\n scheduler.sleep(5)\n return None", "metadata": "root._sub_function", "header": "['module', '___EOS___']", "index": 33 }, { "content": "def _co_function():\n import sys\n from pycopia import scheduler\n sys.stdout.write(\"hello from co_function\\n\")\n scheduler.sleep(5)\n return None", "metadata": "root._co_function", "header": "['module', '___EOS___']", "index": 38 }, { "content": "class ProcessTests(unittest.TestCase):\n\n\n\n\n# def test_pipeline(self):\n# ptest = proctools.spawnpipe(\"cat /etc/hosts | sort\")\n# hosts = ptest.read()\n# self.assertTrue(bool(hosts))\n# self.assertFalse(bool(ptest.readerr()))\n# ptest.close()\n# es = ptest.stat()\n# self.assertTrue(es)\n\n\n", "metadata": "root.ProcessTests", "header": "['module', '___EOS___']", "index": 45 }, { "content": " def setUp(self):\n pass", "metadata": "root.ProcessTests.setUp", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 46 }, { "content": " def test_spawnpipe(self):\n ls = proctools.spawnpipe(\"ls /usr/bin\")\n files = ls.read()\n self.assertTrue(files)\n self.assertFalse(ls.readerr())\n ls.close()\n es = ls.wait()\n self.assertTrue(es)", "metadata": "root.ProcessTests.test_spawnpipe", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 49 }, { "content": " def test_lserror(self):\n ls = proctools.spawnpipe(\"ls /usr/binxx\", merge=0)\n print(ls.read())\n print(\"errors:\")\n print(ls.readerr())\n ls.close()\n ls.wait()\n es = ls.stat()\n self.assertFalse(es)", "metadata": "root.ProcessTests.test_lserror", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 58 }, { "content": " def test_readaline(self):\n lspm = proctools.spawnpipe(\"ls /bin\")\n lines = lspm.readlines()\n self.assertTrue(lines)\n lspm.close()\n es = lspm.stat()\n self.assertTrue(es)", "metadata": "root.ProcessTests.test_readaline", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 68 }, { "content": " def test_subprocess(self):\n sub = proctools.subprocess(_sub_function)\n es = sub.wait()\n self.assertTrue(es)", "metadata": "root.ProcessTests.test_subprocess", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 85 }, { "content": " def test_coprocess(self):\n sub = proctools.coprocess(_co_function)\n line = sub.readline()\n es = sub.wait()\n self.assertTrue(es)", "metadata": "root.ProcessTests.test_coprocess", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 90 }, { "content": " def XXXtest_sudo(self):\n pw = sudo.getpw()\n proc = sudo.sudo(\"/bin/ifconfig -a\", password=pw)\n print(proc.read())\n print(repr(proc.readerr()))\n proc.wait()\n sudo.sudo_reset()", "metadata": "root.ProcessTests.XXXtest_sudo", "header": "['class', 'ProcessTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 96 } ]

[ { "span": "from pycopia import crontab", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 27 }, { "span": "from pycopia import expect", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 26 }, { "span": "from pycopia import netcat", "start_line": 25, "start_column": 0, "end_line": 25, "end_column": 26 }, { "span": "from pycopia import rsynclib", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 28 }, { "span": "from pycopia import sshlib", "start_line": 29, "start_column": 0, "end_line": 29, "end_column": 26 } ]

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[ { "content": " def compute(self):\n machine = self.get_machine()\n jm = self.job_monitor()\n id = self.signature\n job = jm.getCache(id)\n if not job:\n remote = self.get_input('Remote Location')\n local = self.get_input('Local File')\n override = self.force_get_input('Override', False)\n if '://' not in remote:\n remote = self.add_prefix(remote, machine)\n if not int(self.call_hdfs('dfs -test -e ' + remote +\n '; echo $?', machine)):\n if override:\n self.call_hdfs('dfs -rm -r ' + remote, machine)\n else:\n raise ModuleError(self, 'Remote entry already exists')\n tempfile = machine.remote.send_command('mktemp -u').strip()\n result = machine.sendfile(local.name, tempfile)\n self.call_hdfs('dfs -put %s %s' % (tempfile, remote), machine)\n result = machine.remote.rm(tempfile,force=True,recursively=True)\n d = {'remote':remote,'local':local.name}\n self.set_job_machine(d, machine)\n jm.setCache(id, d, self.job_name())\n job = jm.getJob(id)\n self.set_output('Remote Location', job.parameters['remote'])\n self.set_output('Machine', machine)", "metadata": "root.HDFSPut.compute", "header": "['class', 'HDFSPut', '(', 'HadoopBaseModule', ')', ':', '___EOS___']", "index": 67 }, { "content": " def compute(self):\n machine = self.get_machine()\n jm = self.job_monitor()\n id = self.signature\n job = jm.getCache(id)\n if not job:\n remote = self.get_input('Remote Location')\n local = self.get_input('Local File')\n override = self.force_get_input('Override', False)\n if '://' not in remote:\n remote = self.add_prefix(remote, machine)\n if os.path.exists(local.name):\n if override==False:\n raise ModuleError(self, 'Output already exists')\n else:\n if os.path.isdir(local.name):\n shutil.rmtree(local.name)\n else:\n os.unlink(local.name)\n\n tempfile = machine.remote.send_command('mktemp -d -u').strip()\n result = self.call_hdfs('dfs -get %s %s' % (remote, tempfile), machine)\n # too slow with many files\n #res = machine.send_command(\"get -r %s %s\" % (tempfile, local.name) )\n # tar files to increase speed\n result = machine.local.send_command('mkdir %s'%local.name)\n result = machine.sync(local.name,\n tempfile,\n mode=machine.MODE_REMOTE_LOCAL,\n use_tar=True)\n result = machine.remote.rm(tempfile,force=True,recursively=True)\n d = {'remote':remote,'local':local.name}\n self.set_job_machine(d, machine)\n jm.setCache(id, d, self.job_name())\n job = jm.getCache(id)\n self.set_output('Local File', PathObject(job.parameters['local']))\n self.set_output('Machine', machine)", "metadata": "root.HDFSGet.compute", "header": "['class', 'HDFSGet', '(', 'HadoopBaseModule', ')', ':', '___EOS___']", "index": 115 } ]

[ { "span": "result ", "start_line": 85, "start_column": 12, "end_line": 85, "end_column": 18 }, { "span": "result ", "start_line": 136, "start_column": 12, "end_line": 136, "end_column": 18 }, { "span": "result ", "start_line": 140, "start_column": 12, "end_line": 140, "end_column": 18 }, { "span": "result ", "start_line": 141, "start_column": 12, "end_line": 141, "end_column": 18 } ]

[ { "span": "result ", "start_line": 87, "start_column": 12, "end_line": 87, "end_column": 18 }, { "span": "result ", "start_line": 145, "start_column": 12, "end_line": 145, "end_column": 18 } ]

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[ { "content": "import core.modules\nimport core.modules.module_registry\nfrom core.modules.vistrails_module import Module, ModuleError\n\nimport scipy\nimport numpy\nfrom scipy import sparse\n\nfrom Array import *\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class MatrixModule(object):\n my_namespace = 'scipy|matrix'", "metadata": "root.MatrixModule", "header": "['module', '___EOS___']", "index": 10 }, { "content": "class MatrixOp(object):\n my_namespace = 'scipy|matrix|operation'", "metadata": "root.MatrixOp", "header": "['module', '___EOS___']", "index": 13 }, { "content": "class Matrix(MatrixModule, Module):\n \"\"\" Container class for the scipy.sparse.csc_matrix class \"\"\"\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.Matrix", "header": "['module', '___EOS___']", "index": 16 }, { "content": " def __init__(self):\n Module.__init__(self)\n self.matrix = None", "metadata": "root.Matrix.__init__", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 18 }, { "content": " def get_shape(self):\n return self.matrix.shape", "metadata": "root.Matrix.get_shape", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 22 }, { "content": " def get_conjugate(self):\n return self.matrix.conjugate()", "metadata": "root.Matrix.get_conjugate", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 25 }, { "content": " def get_column(self, colId):\n return self.matrix.getcol(colId)", "metadata": "root.Matrix.get_column", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 28 }, { "content": " def get_row(self, rowId):\n return self.matrix.getrow(rowId)", "metadata": "root.Matrix.get_row", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 31 }, { "content": " def set_diagonal(self, vals):\n self.matrix.setdiag(vals)", "metadata": "root.Matrix.set_diagonal", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 34 }, { "content": " def toarray(self):\n return self.matrix.toarray()", "metadata": "root.Matrix.toarray", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 37 }, { "content": " def transpose(self):\n return self.matrix.transpose()", "metadata": "root.Matrix.transpose", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 40 }, { "content": " def get_num_elements(self):\n return self.matrix.getnnz()", "metadata": "root.Matrix.get_num_elements", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 43 }, { "content": " def get_max_elements(self):\n return self.matrix.nzmax", "metadata": "root.Matrix.get_max_elements", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 46 }, { "content": " def get_reals(self):\n return self.matrix._real()", "metadata": "root.Matrix.get_reals", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 49 }, { "content": " def get_imaginaries(self):\n return self.matrix._imag()", "metadata": "root.Matrix.get_imaginaries", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 52 }, { "content": " def get_matrix(self):\n return self.matrix", "metadata": "root.Matrix.get_matrix", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 55 }, { "content": " def set_matrix(self, mat):\n self.matrix = mat", "metadata": "root.Matrix.set_matrix", "header": "['class', 'Matrix', '(', 'MatrixModule', ',', 'Module', ')', ':', '___EOS___']", "index": 58 }, { "content": "class MatrixMultiply(MatrixOp, Module):\n \"\"\" Multiply two matrices together \"\"\"\n", "metadata": "root.MatrixMultiply", "header": "['module', '___EOS___']", "index": 61 }, { "content": " def compute(self):\n a = self.get_input(\"Matrix1\")\n b = self.get_input(\"Matrix2\")\n out = Matrix()\n out.set_matrix(a.get_matrix() * b.get_matrix())\n\n self.set_output(\"Matrix Output\", out)", "metadata": "root.MatrixMultiply.compute", "header": "['class', 'MatrixMultiply', '(', 'MatrixOp', ',', 'Module', ')', ':', '___EOS___']", "index": 63 }, { "content": " @classmethod\n def register(cls, reg, basic):\n reg.add_module(cls, namespace=cls.my_namespace)\n reg.add_input_port(cls, \"Matrix1\", (Matrix, 'Input Matrix 1'))\n reg.add_input_port(cls, \"Matrix2\", (Matrix, 'Input Matrix 2'))\n reg.add_output_port(cls, \"Matrix Output\", (Matrix, 'Output Matrix'))", "metadata": "root.MatrixMultiply.register", "header": "['class', 'MatrixMultiply', '(', 'MatrixOp', ',', 'Module', ')', ':', '___EOS___']", "index": 71 }, { "content": "class MatrixConjugate(MatrixOp, Module):\n \"\"\" Get the complex conjugate of the input matrix. \"\"\"\n", "metadata": "root.MatrixConjugate", "header": "['module', '___EOS___']", "index": 78 }, { "content": " def compute(self):\n a = self.get_input(\"Matrix\")\n b = a.get_conjugate().copy()\n out = Matrix()\n out.set_matrix(b)\n self.set_output(\"Output\", out)", "metadata": "root.MatrixConjugate.compute", "header": "['class', 'MatrixConjugate', '(', 'MatrixOp', ',', 'Module', ')', ':', '___EOS___']", "index": 80 }, { "content": " @classmethod\n def register(cls, reg, basic):\n reg.add_module(cls, namespace=cls.my_namespace)\n reg.add_input_port(cls, \"Matrix\", (Matrix, 'Input Matrix'))\n reg.add_output_port(cls, \"Output\", (Matrix, 'Output Matrix'))", "metadata": "root.MatrixConjugate.register", "header": "['class', 'MatrixConjugate', '(', 'MatrixOp', ',', 'Module', ')', ':', '___EOS___']", "index": 87 }, { "content": "class MatrixToArray(MatrixOp, Module):\n \"\"\" Convert a SciPy matrix to a Numpy Array \"\"\"\n", "metadata": "root.MatrixToArray", "header": "['module', '___EOS___']", "index": 93 }, { "content": " def compute(self):\n m = self.get_input(\"Matrix\")\n a = m.toarray()\n out = NDArray()\n out.set_array(a)\n self.set_output(\"Output Array\", out)", "metadata": "root.MatrixToArray.compute", "header": "['class', 'MatrixToArray', '(', 'MatrixOp', ',', 'Module', ')', ':', '___EOS___']", "index": 95 }, { "content": " @classmethod\n def register(cls, reg, basic):\n reg.add_module(cls, namespace=cls.my_namespace)\n reg.add_input_port(cls, \"Matrix\", (Matrix, 'Input Matrix'))\n reg.add_output_port(cls, \"Output Array\", (NDArray, 'Output Array'))", "metadata": "root.MatrixToArray.register", "header": "['class', 'MatrixToArray', '(', 'MatrixOp', ',', 'Module', ')', ':', '___EOS___']", "index": 102 } ]

[ { "span": "import core.modules", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 19 }, { "span": "import core.modules.module_registry", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 35 }, { "span": "from core.modules.vistrails_module import Module, ModuleError", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 61 }, { "span": "import scipy", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 12 }, { "span": "import numpy", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 12 }, { "span": "from scipy import sparse", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 24 } ]

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[ { "content": "\"\"\"\nKenshoto's Elf parser\n\nThis package will let you use programatic ninja-fu\nwhen trying to parse Elf binaries. The API is based\naround several objects representing constructs in the\nElf binary format. The Elf object itself contains\nparsed metadata and lists of things like section headers\nand relocation entries. Additionally, most of the\nobjects implement repr() in some form or another which\nallows you a bunch of readelf-like functionality.\n\n*Eventually* this API will allow you to modify Elf binaries\nand spit them back out in working order (not complete, you\nmay notice some of the initial code).\n\nSend bug reports to Invisigoth or Metr0.\n\n\"\"\"\n# Copyright (C) 2007 Invisigoth - See LICENSE file for details\nimport os\nimport sys\nimport struct\nimport traceback\nimport zlib\n\nfrom stat import *\nfrom Elf.elf_lookup import *\nimport vstruct\nimport vstruct.defs.elf as vs_elf\n\nverbose = False\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n \n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from stat import *", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 18 } ]

[]

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[ { "content": " def test_eofRemote(self):\n self.sock.dataReceived(\n struct.pack('!BBH', 4, 2, 34)\n + socket.inet_aton('1.2.3.4')\n + 'fooBAR'\n + '\\0')\n sent = self.sock.transport.value()\n self.sock.transport.clear()\n\n # connect\n incoming = self.sock.driver_listen.buildProtocol(('1.2.3.4', 5345))\n self.assertNotIdentical(incoming, None)\n incoming.transport = StringTCPTransport()\n incoming.connectionMade()\n\n # now we should have the second reply packet\n sent = self.sock.transport.value()\n self.sock.transport.clear()\n self.assertEqual(sent,\n struct.pack('!BBH', 0, 90, 0)\n + socket.inet_aton('0.0.0.0'))\n self.assert_(not self.sock.transport.stringTCPTransport_closing)\n\n # pass some data through\n self.sock.dataReceived('hello, world')\n self.assertEqual(incoming.transport.value(),\n 'hello, world')\n\n # now close it from the server side\n incoming.transport.loseConnection()\n incoming.connectionLost('fake reason')", "metadata": "root.Bind.test_eofRemote", "header": "['class', 'Bind', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 414 }, { "content": " def test_eofLocal(self):\n self.sock.dataReceived(\n struct.pack('!BBH', 4, 2, 34)\n + socket.inet_aton('1.2.3.4')\n + 'fooBAR'\n + '\\0')\n sent = self.sock.transport.value()\n self.sock.transport.clear()\n\n # connect\n incoming = self.sock.driver_listen.buildProtocol(('1.2.3.4', 5345))\n self.assertNotIdentical(incoming, None)\n incoming.transport = StringTCPTransport()\n incoming.connectionMade()\n\n # now we should have the second reply packet\n sent = self.sock.transport.value()\n self.sock.transport.clear()\n self.assertEqual(sent,\n struct.pack('!BBH', 0, 90, 0)\n + socket.inet_aton('0.0.0.0'))\n self.assert_(not self.sock.transport.stringTCPTransport_closing)\n\n # pass some data through\n self.sock.dataReceived('hello, world')\n self.assertEqual(incoming.transport.value(),\n 'hello, world')\n\n # now close it from the client side\n self.sock.connectionLost('fake reason')", "metadata": "root.Bind.test_eofLocal", "header": "['class', 'Bind', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 446 }, { "content": " def test_badSource(self):\n self.sock.dataReceived(\n struct.pack('!BBH', 4, 2, 34)\n + socket.inet_aton('1.2.3.4')\n + 'fooBAR'\n + '\\0')\n sent = self.sock.transport.value()\n self.sock.transport.clear()\n\n # connect from WRONG address\n incoming = self.sock.driver_listen.buildProtocol(('1.6.6.6', 666))\n self.assertIdentical(incoming, None)\n\n # Now we should have the second reply packet and it should\n # be a failure. The connection should be closing.\n sent = self.sock.transport.value()\n self.sock.transport.clear()\n self.assertEqual(sent,\n struct.pack('!BBH', 0, 91, 0)\n + socket.inet_aton('0.0.0.0'))\n self.assert_(self.sock.transport.stringTCPTransport_closing)", "metadata": "root.Bind.test_badSource", "header": "['class', 'Bind', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 477 } ]

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[ { "content": " def clean(self):\n # Check that both passwords (if present) are the same\n password = self.cleaned_data.get('password', None)\n confirm_password = self.cleaned_data.get('confirm_password', None)\n if password and confirm_password and (password != confirm_password):\n raise forms.ValidationError(\"Passwords don't match\")\n # Remove fields that are not in the Model to avoid any mismatch when synchronizing\n d = dict(self.cleaned_data)\n if \"confirm_password\" in d:\n del d[\"confirm_password\"]\n p = self._meta.model(**d)\n return self.cleaned_data", "metadata": "root.xmlrpcServerProxyForm.clean", "header": "['class', 'xmlrpcServerProxyForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 51 } ]

[ { "span": "p ", "start_line": 61, "start_column": 8, "end_line": 61, "end_column": 9 } ]

[]

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[ { "content": "class DbShell(cmd.Cmd):\n _history_path = os.path.expanduser('~/.dbsh_history')\n yes_args = ('on', 'yes')\n no_args = ('off', 'no')\n # sql commands that are commonly at the start of a sql command\n sqlstarters = ['alter', 'create', 'delete', 'drop', 'insert into',\n 'select', 'update']\n # additional sql keywords\n sqlkeywords = ['database', 'from', 'left', 'limit', 'index',\n 'join', 'null', 'outer', 'table', 'trigger',\n 'using', 'values', 'view']\n\n prompt = 'dbsh> '\n multiline_prompt = ' ...> '\n doc_header = \"Documented commands (type .help <topic>):\"\n intro = \"\"\"dbstore sql shell.\ntype \".quit\" to exit, \".help\" for help\"\"\"\n identchars = cmd.IDENTCHARS + '.'\n default_width = 10\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n # funtions defined below\n schemaBits = ('tables', 'triggers', 'functions', 'sequences',\n 'triggers')\n\n\n\n # headers\n\n\n do__head = do__headers\n help__head = help__headers\n complete__headers = complete__yesno\n complete__head = complete__yesno\n\n # pager\n\n\n complete__pager = complete__yesno\n\n # stats\n\n\n complete__stats = complete__yesno\n\n # mode\n\n modes = ('column', 'list')\n\n\n\n do__head = do__headers\n help__head = help__headers\n complete__head = complete__headers\n\n # width\n\n\n complete__width = complete__noop\n\n # quit\n\n\n complete__quit = complete__noop\n\n # reset\n\n\n complete__reset = complete__noop\n\n # help (mostly builtin)\n\n\n complete__help = cmd.Cmd.complete_help", "metadata": "root.DbShell", "header": "['module', '___EOS___']", "index": 32 } ]

[ { "span": "do__head ", "start_line": 380, "start_column": 4, "end_line": 380, "end_column": 12 }, { "span": "help__head ", "start_line": 381, "start_column": 4, "end_line": 381, "end_column": 14 }, { "span": "complete__head ", "start_line": 383, "start_column": 4, "end_line": 383, "end_column": 18 } ]

[ { "span": "do__head ", "start_line": 439, "start_column": 4, "end_line": 439, "end_column": 12 }, { "span": "help__head ", "start_line": 440, "start_column": 4, "end_line": 440, "end_column": 14 }, { "span": "complete__head ", "start_line": 441, "start_column": 4, "end_line": 441, "end_column": 18 } ]

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[ { "content": "\"\"\"RAND Health Insurance Experiment Data\"\"\"\n\n__docformat__ = 'restructuredtext'\n\nCOPYRIGHT = \"\"\"This is in the public domain.\"\"\"\nTITLE = __doc__\nSOURCE = \"\"\"\nThe data was collected by the RAND corporation as part of the Health\nInsurance Experiment (HIE).\n\nhttp://www.rand.org/health/projects/hie.html\n\nThis data was used in::\n\n Cameron, A.C. amd Trivedi, P.K. 2005. `Microeconometrics: Methods\n and Applications,` Cambridge: New York.\n\nAnd was obtained from: <http://cameron.econ.ucdavis.edu/mmabook/mmadata.html>\n\nSee randhie/src for the original data and description. The data included\nhere contains only a subset of the original data. The data varies slightly\ncompared to that reported in Cameron and Trivedi.\n\"\"\"\n\nDESCRSHORT = \"\"\"The RAND Co. Health Insurance Experiment Data\"\"\"\n\nDESCRLONG = \"\"\"\"\"\"\n\nNOTE = \"\"\"::\n\n Number of observations - 20,190\n Number of variables - 10\n Variable name definitions::\n\n mdvis - Number of outpatient visits to an MD\n lncoins - ln(coinsurance + 1), 0 <= coninsurance <= 100\n idp - 1 if individual deductible plan, 0 otherwise\n lpi - ln(max(1, annual participation incentive payment))\n fmde - 0 if idp = 1; ln(max(1, MDE/(0.01 coinsurance))) otherwise\n physlm - 1 if the person has a physical limitation\n disea - number of chronic diseases\n hlthg - 1 if self-rated health is good\n hlthf - 1 if self-rated health is fair\n hlthp - 1 if self-rated health is poor\n (Omitted category is excellent self-rated health)\n\"\"\"\n\nfrom numpy import recfromtxt, column_stack, array\nfrom statsmodels.datasets import utils as du\nfrom os.path import dirname, abspath\n\nPATH = '%s/%s' % (dirname(abspath(__file__)), 'randhie.csv')\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def load():\n \"\"\"\n Loads the RAND HIE data and returns a Dataset class.\n\n ----------\n endog - response variable, mdvis\n exog - design\n\n Returns\n Load instance:\n a class of the data with array attrbutes 'endog' and 'exog'\n \"\"\"\n data = _get_data()\n return du.process_recarray(data, endog_idx=0, dtype=float)", "metadata": "root.load", "header": "['module', '___EOS___']", "index": 53 }, { "content": "def load_pandas():\n \"\"\"\n Loads the RAND HIE data and returns a Dataset class.\n\n ----------\n endog - response variable, mdvis\n exog - design\n\n Returns\n Load instance:\n a class of the data with array attrbutes 'endog' and 'exog'\n \"\"\"\n from pandas import read_csv\n data = read_csv(PATH)\n return du.process_recarray_pandas(data, endog_idx=0)", "metadata": "root.load_pandas", "header": "['module', '___EOS___']", "index": 68 }, { "content": "def _get_data():\n with open(PATH, \"rb\") as f:\n data = recfromtxt(f, delimiter=\",\", names=True, dtype=float)\n return data", "metadata": "root._get_data", "header": "['module', '___EOS___']", "index": 84 } ]

[ { "span": "from numpy import recfromtxt, column_stack, array", "start_line": 47, "start_column": 0, "end_line": 47, "end_column": 49 } ]

[]

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[ { "content": "#!/usr/bin/env python\n\n\"\"\"\nPython interface to CUSPARSE functions.\n\nNote: this module does not explicitly depend on PyCUDA.\n\"\"\"\n\nimport atexit\nimport ctypes.util\nimport platform\nfrom string import Template\nimport sys\nimport warnings\n\nimport numpy as np\n\nimport cuda\n\n# Load library:\n_version_list = [7.5, 7.0, 6.5, 6.0, 5.5, 5.0, 4.0]\nif 'linux' in sys.platform:\n _libcusparse_libname_list = ['libcusparse.so'] + \\\n ['libcusparse.so.%s' % v for v in _version_list]\nelif sys.platform == 'darwin':\n _libcusparse_libname_list = ['libcusparse.dylib']\nelif sys.platform == 'win32':\n if platform.machine().endswith('64'):\n _libcusparse_libname_list = ['cusparse.dll'] + \\\n ['cusparse64_%s.dll' % int(10*v) for v in _version_list]\n else:\n _libcusparse_libname_list = ['cusparse.dll'] + \\\n ['cusparse32_%s.dll' % int(10*v) for v in _version_list]\nelse:\n raise RuntimeError('unsupported platform')\n\n# Print understandable error message when library cannot be found:\n_libcusparse = None\nfor _libcusparse_libname in _libcusparse_libname_list:\n try:\n if sys.platform == 'win32':\n _libcusparse = ctypes.windll.LoadLibrary(_libcusparse_libname)\n else:\n _libcusparse = ctypes.cdll.LoadLibrary(_libcusparse_libname)\n except OSError:\n pass\n else:\n break\nif _libcusparse == None:\n OSError('CUDA sparse library not found')\n\n\n\n\n\n\n\n\n\n\ncusparseExceptions = {\n 1: cusparseStatusNotInitialized,\n 2: cusparseStatusAllocFailed,\n 3: cusparseStatusInvalidValue,\n 4: cusparseStatusArchMismatch,\n 5: cusparseStatusMappingError,\n 6: cusparseStatusExecutionFailed,\n 7: cusparseStatusInternalError,\n 8: cusparseStatusMatrixTypeNotSupported,\n }\n\n# Matrix types:\nCUSPARSE_MATRIX_TYPE_GENERAL = 0\nCUSPARSE_MATRIX_TYPE_SYMMETRIC = 1\nCUSPARSE_MATRIX_TYPE_HERMITIAN = 2\nCUSPARSE_MATRIX_TYPE_TRIANGULAR = 3\n\nCUSPARSE_FILL_MODE_LOWER = 0\nCUSPARSE_FILL_MODE_UPPER = 1\n\n# Whether or not a matrix' diagonal entries are unity:\nCUSPARSE_DIAG_TYPE_NON_UNIT = 0\nCUSPARSE_DIAG_TYPE_UNIT = 1\n\n# Matrix index bases:\nCUSPARSE_INDEX_BASE_ZERO = 0\nCUSPARSE_INDEX_BASE_ONE = 1\n\n# Operation types:\nCUSPARSE_OPERATION_NON_TRANSPOSE = 0\nCUSPARSE_OPERATION_TRANSPOSE = 1\nCUSPARSE_OPERATION_CONJUGATE_TRANSPOSE = 2\n\n# Whether or not to parse elements of a dense matrix row or column-wise.\nCUSPARSE_DIRECTION_ROW = 0\nCUSPARSE_DIRECTION_COLUMN = 1\n\n# Helper functions:\n\n\n_libcusparse.cusparseCreate.restype = int\n_libcusparse.cusparseCreate.argtypes = [ctypes.c_void_p]\n\n_libcusparse.cusparseDestroy.restype = int\n_libcusparse.cusparseDestroy.argtypes = [ctypes.c_int]\n\n_libcusparse.cusparseGetVersion.restype = int\n_libcusparse.cusparseGetVersion.argtypes = [ctypes.c_int,\n ctypes.c_void_p]\n\n_libcusparse.cusparseSetStream.restype = int\n_libcusparse.cusparseSetStream.argtypes = [ctypes.c_int,\n ctypes.c_int]\n\n_libcusparse.cusparseCreateMatDescr.restype = int\n_libcusparse.cusparseCreateMatDescr.argtypes = [cusparseMatDescr]\n\n_libcusparse.cusparseDestroyMatDescr.restype = int\n_libcusparse.cusparseDestroyMatDescr.argtypes = [ctypes.c_int]\n\n_libcusparse.cusparseSetMatType.restype = int\n_libcusparse.cusparseSetMatType.argtypes = [cusparseMatDescr,\n ctypes.c_int]\n\n_libcusparse.cusparseGetMatType.restype = int\n_libcusparse.cusparseGetMatType.argtypes = [cusparseMatDescr] \n\n# Format conversion functions:\n_libcusparse.cusparseSnnz.restype = int\n_libcusparse.cusparseSnnz.argtypes = [ctypes.c_int,\n ctypes.c_int,\n ctypes.c_int,\n ctypes.c_int,\n cusparseMatDescr,\n ctypes.c_void_p,\n ctypes.c_int,\n ctypes.c_void_p,\n ctypes.c_void_p]\n\n_libcusparse.cusparseSdense2csr.restype = int\n_libcusparse.cusparseSdense2csr.argtypes = [ctypes.c_int,\n ctypes.c_int,\n ctypes.c_int,\n cusparseMatDescr,\n ctypes.c_void_p,\n ctypes.c_int,\n ctypes.c_void_p,\n ctypes.c_void_p,\n ctypes.c_void_p,\n ctypes.c_void_p]\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class cusparseError(Exception):\n \"\"\"CUSPARSE error\"\"\"\n pass", "metadata": "root.cusparseError", "header": "['module', '___EOS___']", "index": 51 }, { "content": "class cusparseStatusNotInitialized(cusparseError):\n \"\"\"CUSPARSE library not initialized\"\"\"\n pass", "metadata": "root.cusparseStatusNotInitialized", "header": "['module', '___EOS___']", "index": 55 }, { "content": "class cusparseStatusAllocFailed(cusparseError):\n \"\"\"CUSPARSE resource allocation failed\"\"\"\n pass", "metadata": "root.cusparseStatusAllocFailed", "header": "['module', '___EOS___']", "index": 59 }, { "content": "class cusparseStatusInvalidValue(cusparseError):\n \"\"\"Unsupported value passed to the function\"\"\"\n pass", "metadata": "root.cusparseStatusInvalidValue", "header": "['module', '___EOS___']", "index": 63 }, { "content": "class cusparseStatusArchMismatch(cusparseError):\n \"\"\"Function requires a feature absent from the device architecture\"\"\"\n pass", "metadata": "root.cusparseStatusArchMismatch", "header": "['module', '___EOS___']", "index": 67 }, { "content": "class cusparseStatusMappingError(cusparseError):\n \"\"\"An access to GPU memory space failed\"\"\"\n pass", "metadata": "root.cusparseStatusMappingError", "header": "['module', '___EOS___']", "index": 71 }, { "content": "class cusparseStatusExecutionFailed(cusparseError):\n \"\"\"GPU program failed to execute\"\"\"\n pass", "metadata": "root.cusparseStatusExecutionFailed", "header": "['module', '___EOS___']", "index": 75 }, { "content": "class cusparseStatusInternalError(cusparseError):\n \"\"\"An internal CUSPARSE operation failed\"\"\"\n pass", "metadata": "root.cusparseStatusInternalError", "header": "['module', '___EOS___']", "index": 79 }, { "content": "class cusparseStatusMatrixTypeNotSupported(cusparseError):\n \"\"\"The matrix type is not supported by this function\"\"\"\n pass", "metadata": "root.cusparseStatusMatrixTypeNotSupported", "header": "['module', '___EOS___']", "index": 83 }, { "content": "class cusparseMatDescr(ctypes.Structure):\n _fields_ = [\n ('MatrixType', ctypes.c_int),\n ('FillMode', ctypes.c_int),\n ('DiagType', ctypes.c_int),\n ('IndexBase', ctypes.c_int)\n ]", "metadata": "root.cusparseMatDescr", "header": "['module', '___EOS___']", "index": 125 }, { "content": "def cusparseCheckStatus(status):\n \"\"\"\n Raise CUSPARSE exception\n\n Raise an exception corresponding to the specified CUSPARSE error\n code.\n\n Parameters\n ----------\n status : int\n CUSPARSE error code.\n\n See Also\n --------\n cusparseExceptions\n\n \"\"\"\n\n if status != 0:\n try:\n raise cusparseExceptions[status]\n except KeyError:\n raise cusparseError", "metadata": "root.cusparseCheckStatus", "header": "['module', '___EOS___']", "index": 133 }, { "content": "def cusparseCreate():\n \"\"\"\n Initialize CUSPARSE.\n\n Initializes CUSPARSE and creates a handle to a structure holding\n the CUSPARSE library context.\n\n Returns\n -------\n handle : int\n CUSPARSE library context.\n\n \"\"\"\n\n handle = ctypes.c_int()\n status = _libcusparse.cusparseCreate(ctypes.byref(handle))\n cusparseCheckStatus(status)\n return handle.value", "metadata": "root.cusparseCreate", "header": "['module', '___EOS___']", "index": 159 }, { "content": "def cusparseDestroy(handle):\n \"\"\"\n Release CUSPARSE resources.\n\n Releases hardware resources used by CUSPARSE\n\n Parameters\n ----------\n handle : int\n CUSPARSE library context.\n\n \"\"\"\n\n status = _libcusparse.cusparseDestroy(handle)\n cusparseCheckStatus(status)", "metadata": "root.cusparseDestroy", "header": "['module', '___EOS___']", "index": 180 }, { "content": "def cusparseGetVersion(handle):\n \"\"\"\n Return CUSPARSE library version.\n\n Returns the version number of the CUSPARSE library.\n\n Parameters\n ----------\n handle : int\n CUSPARSE library context.\n\n Returns\n -------\n version : int\n CUSPARSE library version number.\n\n \"\"\"\n\n version = ctypes.c_int()\n status = _libcusparse.cusparseGetVersion(handle,\n ctypes.byref(version))\n cusparseCheckStatus(status)\n return version.value", "metadata": "root.cusparseGetVersion", "header": "['module', '___EOS___']", "index": 199 }, { "content": "def cusparseSetStream(handle, id):\n \"\"\"\n Sets the CUSPARSE stream in which kernels will run.\n\n Parameters\n ----------\n handle : int\n CUSPARSE library context.\n id : int\n Stream ID.\n\n \"\"\"\n\n status = _libcusparse.cusparseSetStream(handle, id)\n cusparseCheckStatus(status)", "metadata": "root.cusparseSetStream", "header": "['module', '___EOS___']", "index": 226 }, { "content": "def cusparseCreateMatDescr():\n \"\"\"\n Initialize a sparse matrix descriptor.\n\n Initializes the `MatrixType` and `IndexBase` fields of the matrix\n descriptor to the default values `CUSPARSE_MATRIX_TYPE_GENERAL`\n and `CUSPARSE_INDEX_BASE_ZERO`.\n\n Returns\n -------\n desc : cusparseMatDescr\n Matrix descriptor.\n\n \"\"\"\n\n desc = cusparseMatrixDesc()\n status = _libcusparse.cusparseCreateMatDescr(ctypes.byref(desc))\n cusparseCheckStatus(status)\n return desc", "metadata": "root.cusparseCreateMatDescr", "header": "['module', '___EOS___']", "index": 244 }, { "content": "def cusparseDestroyMatDescr(desc):\n \"\"\"\n Releases the memory allocated for the matrix descriptor.\n\n Parameters\n ----------\n desc : cusparseMatDescr\n Matrix descriptor.\n\n \"\"\"\n\n status = _libcusparse.cusparseDestroyMatDescr(desc)\n cusparseCheckStatus(status)", "metadata": "root.cusparseDestroyMatDescr", "header": "['module', '___EOS___']", "index": 266 }, { "content": "def cusparseSetMatType(desc, type):\n \"\"\"\n Sets the matrix type of the specified matrix.\n\n Parameters\n ----------\n desc : cusparseMatDescr\n Matrix descriptor.\n type : int\n Matrix type.\n\n \"\"\"\n\n status = _libcusparse.cusparseSetMatType(desc, type)\n cusparseCheckStatus(status)", "metadata": "root.cusparseSetMatType", "header": "['module', '___EOS___']", "index": 283 }, { "content": "def cusparseGetMatType(desc):\n \"\"\"\n Gets the matrix type of the specified matrix.\n\n Parameters\n ----------\n desc : cusparseMatDescr\n Matrix descriptor.\n\n Returns\n -------\n type : int\n Matrix type.\n\n \"\"\"\n\n return _libcusparse.cusparseGetMatType(desc)", "metadata": "root.cusparseGetMatType", "header": "['module', '___EOS___']", "index": 301 }, { "content": "def cusparseSnnz(handle, dirA, m, n, descrA, A, lda, \n nnzPerRowColumn, nnzTotalDevHostPtr):\n \"\"\"\n Compute number of non-zero elements per row, column, or dense matrix.\n\n Parameters\n ----------\n handle : int\n CUSPARSE library context.\n dirA : int\n Data direction of elements.\n m : int\n Rows in A.\n n : int\n Columns in A.\n descrA : cusparseMatDescr\n Matrix descriptor.\n A : pycuda.gpuarray.GPUArray\n Dense matrix of dimensions (lda, n).\n lda : int\n Leading dimension of A.\n \n Returns\n -------\n nnzPerRowColumn : pycuda.gpuarray.GPUArray\n Array of length m or n containing the number of \n non-zero elements per row or column, respectively.\n nnzTotalDevHostPtr : pycuda.gpuarray.GPUArray\n Total number of non-zero elements in device or host memory.\n\n \"\"\"\n\n # Unfinished:\n nnzPerRowColumn = gpuarray.empty()\n nnzTotalDevHostPtr = gpuarray.empty()\n\n status = _libcusparse.cusparseSnnz(handle, dirA, m, n, \n descrA, int(A), lda,\n int(nnzPerRowColumn), int(nnzTotalDevHostPtr))\n cusparseCheckStatus(status)\n return nnzPerVector, nnzHost", "metadata": "root.cusparseSnnz", "header": "['module', '___EOS___']", "index": 330 }, { "content": "def cusparseSdense2csr(handle, m, n, descrA, A, lda, \n nnzPerRow, csrValA, csrRowPtrA, csrColIndA):\n # Unfinished\n pass", "metadata": "root.cusparseSdense2csr", "header": "['module', '___EOS___']", "index": 383 } ]

[ { "span": "import atexit", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 13 }, { "span": "from string import Template", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 27 }, { "span": "import warnings", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 15 }, { "span": "import numpy as np", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 18 }, { "span": "import cuda", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 11 } ]

[]

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[ { "content": " def process_extra(self, bundle, request, **kwargs):\n patch_dict = json.loads(request.POST.items()[0][0])\n\n if patch_dict.has_key('delete_interface') and patch_dict.has_key('interface'):\n patch_dict.pop('delete_interface')\n sys = bundle.obj\n interface = patch_dict.pop('interface', None)\n if sys and interface:\n sys.delete_adapter(interface)\n\n if patch_dict.has_key('update_interface') and patch_dict.has_key('interface'):\n patch_dict.pop('update_interface')\n sys = bundle.obj\n if 'interface' in patch_dict:\n sys.update_adapter(**patch_dict)\n\n ## Entry point for adding a new adapter by mac address via the rest API\n if patch_dict.has_key('mac'):\n\n enable_dns = True\n enable_private = True\n enable_public = False\n sys = bundle.obj\n range = patch_dict.pop('range', None)\n fqdn = patch_dict.pop('fqdn', None)\n ip_str = patch_dict.pop('ip_address', None)\n interface = patch_dict.pop('interface', None)\n domain = patch_dict.pop('domain', 'mozilla.com')\n from core.lib.utils import create_ipv4_intr_from_range\n mac = patch_dict['mac']\n if interface:\n interface_type, primary, alias = SystemResource.extract_nic_attrs(interface)\n else:\n interface_type, primary, alias = sys.get_next_adapter()\n\n if not fqdn:\n domain_parsed = \".\".join(sys.hostname.split('.')[1:]) + '.' + domain\n domain_name = domain_parsed.lower()\n label = sys.hostname.split('.')[0]\n else:\n domain_parsed = \".\".join(fqdn.split('.')[1:])\n domain_name = domain_parsed.lower()\n label = fqdn.split('.')[0]\n\n\n if range:\n range_start_str = range.split(',')[0]\n range_end_str = range.split(',')[1]\n s, errors = create_ipv4_intr_from_range(label, domain_name, sys, mac, range_start_str, range_end_str)\n if ip_str:\n domain = Domain.objects.filter(name=domain_parsed)[0]\n s = StaticInterface(label=label, mac=mac, domain=domain, ip_str=ip_str, ip_type='4', system=sys)\n try:\n if s:\n s.save()\n s.update_attrs()\n if enable_dns and enable_public:\n private = View.objects.get(name='private')\n s.views.add(private)\n s.save()\n\n elif enable_dns and enable_private and not enable_public:\n private = View.objects.get(name='private')\n s.views.add(private)\n s.save()\n\n if interface:\n interface_type, primary, alias = SystemResource.extract_nic_attrs(interface)\n else:\n interface_type, primary, alias = sys.get_next_adapter()\n\n s.attrs.primary = primary\n s.attrs.interface_type = interface_type\n s.attrs.alias = alias\n else:\n print 'We failed'\n bundle.errors['error_message'] = \"Unable to create adapter for unknown reason\"\n raise ValidationError(join(e.messages))\n except ValidationError, e:\n bundle.errors['error_message'] = \" \".join(e.messages)\n raise ValidationError(join(e.messages))\n except Exception, e:\n print e", "metadata": "root.SystemResource.process_extra", "header": "['class', 'SystemResource', '(', 'CustomAPIResource', ')', ':', '___EOS___']", "index": 133 } ]

[ { "span": "interface_type,", "start_line": 164, "start_column": 16, "end_line": 164, "end_column": 30 }, { "span": "primary,", "start_line": 164, "start_column": 32, "end_line": 164, "end_column": 39 }, { "span": "alias ", "start_line": 164, "start_column": 41, "end_line": 164, "end_column": 46 }, { "span": "interface_type,", "start_line": 166, "start_column": 16, "end_line": 166, "end_column": 30 }, { "span": "primary,", "start_line": 166, "start_column": 32, "end_line": 166, "end_column": 39 }, { "span": "alias ", "start_line": 166, "start_column": 41, "end_line": 166, "end_column": 46 } ]

[ { "span": "interface_type,", "start_line": 200, "start_column": 24, "end_line": 200, "end_column": 38 }, { "span": "primary,", "start_line": 200, "start_column": 40, "end_line": 200, "end_column": 47 }, { "span": "alias ", "start_line": 200, "start_column": 49, "end_line": 200, "end_column": 54 }, { "span": "interface_type,", "start_line": 202, "start_column": 24, "end_line": 202, "end_column": 38 }, { "span": "primary,", "start_line": 202, "start_column": 40, "end_line": 202, "end_column": 47 }, { "span": "alias ", "start_line": 202, "start_column": 49, "end_line": 202, "end_column": 54 } ]

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"\\u", "next", "\\u", "adapter_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "s_", "._", "attrs_", "._", "primary_", "=_", "primary_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "s_", "._", "attrs_", "._", "interface", "\\u", "type_", "=_", "interface", "\\u", "type_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "s_", "._", "attrs_", "._", "alias_", "=_", "alias_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "else_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " ", "_", "print_", "'", "We", " ", "fail", "ed", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "bundle_", "._", "errors_", "[_", "'", "error", "\\u", "message", "'_", "]_", "=_", "\"", "Una", "ble", " ", "to", " ", "create", " ", "adapter", " ", "for", " ", "unknown", " ", "reason", "\"_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "raise_", "Validat", "ion", "Error_", "(_", "join_", "(_", "e_", "._", "messages_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", "Validat", "ion", "Error_", ",_", "e_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "bundle_", "._", "errors_", "[_", "'", "error", "\\u", "message", "'_", "]_", "=_", "\"", " ", "\"_", "._", "join_", "(_", "e_", "._", "messages_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "raise_", "Validat", "ion", "Error_", "(_", "join_", "(_", "e_", "._", "messages_", ")_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", "Exception_", ",_", "e_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "print_", "e_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]

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[ { "content": " def __del__(self):\n if _debug:\n print 'del avbin source'\n try:\n if self._video_stream:\n av.avbin_close_stream(self._video_stream)\n if self._audio_stream:\n av.avbin_close_stream(self._audio_stream)\n av.avbin_close_file(self._file)\n except:\n pass", "metadata": "root.AVbinSource.__del__", "header": "['class', 'AVbinSource', '(', 'StreamingSource', ')', ':', '___EOS___']", "index": 317 } ]

[ { "span": "except:", "start_line": 326, "start_column": 8, "end_line": 326, "end_column": 15 } ]

[]

[ "[CLS]_", "Except", "_", "block_", "handles_", "'", "Base", "Except", "ion", "'_", "[SEP]_", "class_", "AV", "bin", "Source_", "(_", "Stream", "ing", "Source_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "\\u\\u", "del\\u\\u_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "\\u", "debug_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "print_", "'", "del", " ", "av", "bin", " ", "source", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "if_", "self_", "._", "\\u", "video", "\\u", "stream_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "av_", "._", "av", "bin", "\\u", "close", "\\u", "stream_", "(_", "self_", "._", "\\u", "video", "\\u", "stream_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "if_", "self_", "._", "\\u", "audio", "\\u", "stream_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "av_", "._", "av", "bin", "\\u", "close", "\\u", "stream_", "(_", "self_", "._", "\\u", "audio", "\\u", "stream_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "av_", "._", "av", "bin", "\\u", "close", "\\u", "file_", "(_", "self_", "._", "\\u", "file_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "pass_", "\\u\\u\\uNEWLINE\\u\\u\\u_" ]

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[ { "content": "def isDBPort(host, port, db, timeout=10):\n if host == JSONFILE_HOSTNAME:\n return True\n # determine if postgres port\n t = 2\n while t < timeout:\n try:\n conn = urllib.request.urlopen(\"http://{0}:{1}/{2}/status\".format(host, port or '80', db))\n return True # success but doesn't need password\n except HTTPError:\n return False # success, this is really a postgres socket, wants user name\n except URLError:\n return False # something is there but not postgres\n except socket.timeout:\n t = t + 2 # relax - try again with longer timeout\n return False", "metadata": "root.isDBPort", "header": "['module', '___EOS___']", "index": 69 }, { "content": " def insertFiling(self, rssItem, g):\n self.showStatus(\"insert filing\")\n # accession graph -> document vertices\n new_filing = {'documents': []}\n if self.modelXbrl.modelDocument.creationSoftwareComment:\n new_filing['creation_software'] = self.modelXbrl.modelDocument.creationSoftwareComment\n datetimeNow = datetime.datetime.now()\n datetimeNowStr = XmlUtil.dateunionValue(datetimeNow)\n entryUri = modelObjectDocumentUri(self.modelXbrl)\n if rssItem is not None: # sec accession\n # set self.\n new_filing['filingType'] = \"SEC filing\"\n # for an RSS Feed entry from SEC, use rss item's accession information\n new_filing['filingNumber'] = filingNumber = rssItem.accessionNumber\n new_filing['acceptedTimestamp'] = XmlUtil.dateunionValue(rssItem.acceptanceDatetime)\n new_filing['filingDate'] = XmlUtil.dateunionValue(rssItem.filingDate)\n new_filing['entityId'] = rssItem.cikNumber\n new_filing['entityName'] = rssItem.companyName\n new_filing['SICCode'] = rssItem.assignedSic \n new_filing['SECHtmlUrl'] = rssItem.htmlUrl \n new_filing['entryUrl'] = rssItem.url\n self.filingURI = rssItem.htmlUrl\n else:\n # not an RSS Feed item, make up our own accession ID (the time in seconds of epoch)\n intNow = int(time.time())\n new_filing['filingNumber'] = filingNumber = str(intNow)\n self.filingId = int(time.time()) # only available if entered from an SEC filing\n new_filing['filingType'] = \"independent filing\"\n new_filing['acceptedTimestamp'] = datetimeNowStr\n new_filing['filingDate'] = datetimeNowStr\n new_filing['entryUrl'] = UrlUtil.ensureUrl(self.modelXbrl.fileSource.url)\n self.filingURI = filingNumber\n \n g[FILINGS][self.filingURI] = new_filing\n self.filing = new_filing\n \n # for now only one report per filing (but SEC may have multiple in future, such as form SD)\n self.reportURI = modelObjectDocumentUri(self.modelXbrl)\n self.report = {'filing': self.filingURI,\n 'aspectProxies': {},\n 'relationshipSets': {},\n 'dataPoints': {},\n 'messages': {}}\n new_filing['reports'] = {self.reportURI: self.report}\n \n # relationshipSets are a dts property\n self.relationshipSets = [(arcrole, ELR, linkqname, arcqname)\n for arcrole, ELR, linkqname, arcqname in self.modelXbrl.baseSets.keys()\n if ELR and (arcrole.startswith(\"XBRL-\") or (linkqname and arcqname))]", "metadata": "root.XbrlSemanticJsonDatabaseConnection.insertFiling", "header": "['class', 'XbrlSemanticJsonDatabaseConnection', '(', ')', ':', '___EOS___']", "index": 296 }, { "content": " def insertDataDictionary(self):\n # separate graph\n # document-> dataTypeSet -> dataType\n # do all schema dataTypeSet vertices\n \n self.type_id = {}\n self.aspect_id = {}\n self.aspect_proxy = {}\n self.aspect_proxy_uri = {}\n self.roleType_id = {}\n self.arcroleType_id = {}\n \n \n '''\n if any((not self.document_isNew[modelDocument.uri])\n for modelDocument in self.modelXbrl.urlDocs.values()):\n conceptsUsed = self.conceptsUsed()\n '''\n conceptsUsed = self.conceptsUsed()\n \n for modelDocument in self.modelXbrl.urlDocs.values():\n self.showStatus(\"insert DataDictionary \" + modelDocument.basename)\n docUri = modelObjectDocumentUri(modelDocument)\n document = self.documents[docUri]\n # don't re-output existing documents\n if modelDocument.type == Type.SCHEMA:\n isNewDocument = True # self.document_isNew[modelDocument.uri]\n modelConcepts = [modelConcept\n for modelConcept in self.modelXbrl.qnameConcepts.values()\n if modelConcept.modelDocument is modelDocument and\n (isNewDocument or modelConcept in conceptsUsed)]\n if docUri not in self.existingDocumentUris:\n # adding document as new\n document['dataTypes'] = dataTypes = {}\n for modelType in self.modelXbrl.qnameTypes.values():\n if modelType.modelDocument is modelDocument:\n dataTypes[modelType.name] = dataType = {\n 'dataType': modelObjectNameUri(modelType),\n 'document': modelObjectDocumentUri(modelType),\n 'url': modelObjectUri(modelType),\n 'namespaceURI': modelType.qname.namespaceURI,\n 'localName': modelType.name,\n }\n xbrliBaseType = modelType.baseXbrliTypeQname\n if not isinstance(xbrliBaseType, (tuple,list)):\n xbrliBaseType = (xbrliBaseType,)\n for baseType in xbrliBaseType:\n if baseType is not None:\n dataType['baseType'] = qnameUri(baseType)\n if baseType.namespaceURI == \"http://www.w3.org/2001/XMLSchema\":\n dataType['baseXsdType'] = qnameUri(baseType)\n \n typeDerivedFrom = modelType.typeDerivedFrom\n if not isinstance(typeDerivedFrom, (tuple,list)): # list if a union\n typeDerivedFrom = (typeDerivedFrom,)\n for dt in typeDerivedFrom:\n if dt is not None:\n dataType['derivedFrom'] = modelObjectNameUri(dt)\n \n for prop in ('isTextBlock', 'isDomainItemType'):\n propertyValue = getattr(modelType, prop, None)\n if propertyValue:\n dataType[prop] = propertyValue\n document['aspects'] = aspects = {}\n for modelConcept in modelConcepts:\n aspects[modelConcept.name] = aspect = {\n 'document': modelObjectDocumentUri(modelConcept),\n 'url': modelObjectUri(modelConcept),\n 'namespaceURI': modelConcept.qname.namespaceURI,\n 'localName': modelConcept.name,\n 'isAbstract': modelConcept.isAbstract\n }\n if modelConcept.periodType:\n aspect['periodType'] = modelConcept.periodType\n if modelConcept.balance:\n aspect['balance'] = modelConcept.balance\n \n for prop in ('isItem', 'isTuple', 'isLinkPart', \n 'isNumeric', 'isMonetary', 'isExplicitDimension', \n 'isDimensionItem', 'isPrimaryItem',\n 'isTypedDimension', 'isDomainMember', 'isHypercubeItem',\n 'isShares', 'isTextBlock', 'isNillable'):\n propertyValue = getattr(modelConcept, prop, None)\n if propertyValue:\n aspect[prop] = propertyValue\n \n conceptType = modelConcept.type\n if conceptType is not None:\n aspect['dataType'] = modelObjectNameUri(conceptType)\n \n substitutionGroup = modelConcept.substitutionGroup\n if substitutionGroup is not None:\n aspect['substitutionGroup'] = modelObjectNameUri(substitutionGroup)\n document['roleTypes'] = roleTypes = {}\n for modelRoleTypes in self.modelXbrl.roleTypes.values():\n for modelRoleType in modelRoleTypes:\n roleTypes[modelRoleType.roleURI] = roleType = {\n 'document': modelObjectDocumentUri(modelRoleType),\n 'url': modelObjectUri(modelRoleType),\n 'roleURI': modelRoleType.roleURI,\n 'definition': modelRoleType.definition,\n 'usedOn': [modelObjectUri(self.modelXbrl.qnameConcepts[qn]) \n for qn in modelRoleType.usedOns]\n }\n document['arcroleTypes'] = arcroleTypes = {}\n for modelArcroleTypes in self.modelXbrl.arcroleTypes.values():\n for modelArcroleType in modelArcroleTypes:\n arcroleTypes[modelRoleType.roleURI] = arcroleType = {\n 'document': modelObjectDocumentUri(modelArcroleType),\n 'url': modelObjectUri(modelArcroleType),\n 'arcroleURI': modelArcroleType.roleURI,\n 'definition': modelArcroleType.definition,\n 'usedOn': [modelObjectUri(self.modelXbrl.qnameConcepts[qn]) \n for qn in modelArcroleType.usedOns],\n 'cyclesAllowed': modelArcroleType.cyclesAllowed\n }\n\n activity = \"Insert data dictionary types, aspects, roles, and arcroles for \" + modelDocument.uri", "metadata": "root.XbrlSemanticJsonDatabaseConnection.insertDataDictionary", "header": "['class', 'XbrlSemanticJsonDatabaseConnection', '(', ')', ':', '___EOS___']", "index": 420 }, { "content": " def insertDataPoints(self):\n # separate graph\n # document-> dataTypeSet -> dataType\n self.showStatus(\"insert DataPoints\")\n \n # note these initial aspects Qnames used also must be in conceptsUsed above\n dimensions = [] # index by hash of dimension\n dimensionIds = {} # index for dimension\n if self.modelXbrl.modelDocument.type in (Type.INSTANCE, Type.INLINEXBRL):\n contextAspectValueSelections = {} # contexts processed already\n unitIDs = set() # units processed already\n periodProxies = {}\n entityIdentifierAspectProxies = {}\n dataPoints = self.report['dataPoints']\n for fact in self.modelXbrl.factsInInstance:\n self.insertAspectProxies( (fact.qname,) )\n factId = XmlUtil.elementFragmentIdentifier(fact)\n dataPoints[factId] = dataPoint = {\n 'document': modelObjectDocumentUri(fact),\n 'id': factId,\n 'sourceLine': fact.sourceline,\n 'dataPointUrl': modelObjectUri(fact),\n 'baseItem': self.aspectQnameProxyId(fact.qname)\n }\n \n context = fact.context\n concept = fact.concept\n if context is not None:\n if context.entityIdentifier not in entityIdentifierAspectProxies:\n entityScheme, entityIdentifier = context.entityIdentifier\n entityIdentifierAspectProxy = \"{}/{}\".format(\n qnamePrefix_Name(XbrlConst.qnXbrliIdentifier),\n entityIdentifier)\n e = self.insertAspectProxy(XbrlConst.qnXbrliIdentifier, entityIdentifierAspectProxy)\n e['scheme'] = entityScheme\n e['identifier'] = entityIdentifier\n entityIdentifierAspectProxies[context.entityIdentifier] = entityIdentifierAspectProxy\n else:\n entityIdentifierAspectProxy = entityIdentifierAspectProxies[context.entityIdentifier]\n dataPoint['entityIdentifier'] = entityIdentifierAspectProxy\n\n if context.isForeverPeriod:\n period = \"forever\"\n if context.isInstantPeriod:\n endDate = XmlUtil.dateunionValue(context.instantDatetime, subtractOneDay=True).replace(':','_')\n period = \"instant/{}\".format(endDate)\n else:\n startDate = XmlUtil.dateunionValue(context.startDatetime).replace(':','_')\n endDate = XmlUtil.dateunionValue(context.endDatetime, subtractOneDay=True).replace(':','_') \n period = \"duration/{}/{}\".format(startDate, endDate)\n if period not in periodProxies:\n periodProxy = \"{}/{}\".format(\n qnamePrefix_Name(XbrlConst.qnXbrliPeriod),\n period)\n p = self.insertAspectProxy(XbrlConst.qnXbrliPeriod, periodProxy)\n p['isForever'] = context.isForeverPeriod\n p['isInstant'] = context.isInstantPeriod\n if context.isStartEndPeriod:\n d = context.startDatetime\n if d.hour == 0 and d.minute == 0 and d.second == 0:\n d = d.date()\n p['startDate'] = d\n if context.isStartEndPeriod or context.isInstantPeriod:\n d = context.endDatetime\n if d.hour == 0 and d.minute == 0 and d.second == 0:\n d = (d - datetime.timedelta(1)).date()\n p['endDate'] = d\n periodProxies[period] = periodProxy\n else:\n periodProxy = periodProxies[period]\n dataPoint['period'] = periodProxy\n \n dataPoint['contextUrl'] = modelObjectUri(context)\n dataPoint['contextId'] = context.id\n if context.id not in contextAspectValueSelections:\n contextAspectValueSelections[context.id] = contextAspectValueSelection = []\n \n for dimVal in context.qnameDims.values():\n dim = qnamePrefix_Name(dimVal.dimensionQname)\n if dimVal.isExplicit:\n self.insertAspectProxies( (dimVal.memberQname,) ) # need imediate use of proxy\n v = self.aspectQnameProxyId(dimVal.memberQname)\n else:\n v = dimVal.typedMember.stringValue\n dimProxy = \"{}/{}\".format(dim, v)\n d = self.insertAspectProxy(dimVal.dimensionQname, dimProxy)\n contextAspectValueSelection.append(dimProxy)\n d['aspect'] = dim\n if dimVal.isExplicit:\n d['aspectValue'] = v\n else:\n d['typedValue'] = v\n else:\n contextAspectValueSelection = contextAspectValueSelections[context.id]\n dataPoint['aspectValueSelections'] = contextAspectValueSelection\n if fact.isNumeric:\n if fact.precision == \"INF\":\n dataPoint['precision'] = \"INF\"\n elif fact.precision is not None:\n dataPoint['precision'] = fact.precision\n if fact.decimals == \"INF\":\n dataPoint['decimals'] = \"INF\"\n elif fact.decimals is not None:\n dataPoint['decimals'] = fact.decimals\n if fact.unit is not None:\n unit = fact.unit\n unitProxy = \"{}/{}\".format(\n qnamePrefix_Name(XbrlConst.qnXbrliUnit),\n unit.id)\n dataPoint['unit'] = unitProxy\n if unit.id not in unitIDs:\n unitIDs.add(unit.id)\n u = self.insertAspectProxy(XbrlConst.qnXbrliUnit, unitProxy)\n u['unitId'] = unit.id\n \n mults, divs = unit.measures\n u['multiplyMeasures'] = [qnameUri(qn) for qn in mults]\n if divs:\n u['divideMeasures'] = [qnameUri(qn) for qn in divs]\n if fact.xmlLang is None and fact.concept is not None and fact.concept.baseXsdType is not None:\n dataPoint['value'] = fact.xValue\n # The insert with base XSD type but no language\n elif fact.xmlLang is not None:\n # assuming string type with language\n dataPoint['language'] = fact.xmlLang\n dataPoint['value'] = fact.value\n else:\n # Otherwise insert as plain liternal with no language or datatype\n dataPoint['value'] = fact.value\n \n if fact.modelTupleFacts:\n dataPoint['tuple'] = [XmlUtil.elementFragmentIdentifier(tupleFact)\n for tupleFact in fact.modelTupleFacts]", "metadata": "root.XbrlSemanticJsonDatabaseConnection.insertDataPoints", "header": "['class', 'XbrlSemanticJsonDatabaseConnection', '(', ')', ':', '___EOS___']", "index": 594 }, { "content": " def insertRelationshipSets(self):\n self.showStatus(\"insert relationship sets\")\n aspectQnamesUsed = set()\n for i, relationshipSetKey in enumerate(self.relationshipSets):\n arcrole, linkrole, linkqname, arcqname = relationshipSetKey\n if linkqname:\n aspectQnamesUsed.add(linkqname)\n if arcqname:\n aspectQnamesUsed.add(arcqname)\n self.insertAspectProxies(aspectQnamesUsed)\n \n relationshipSets = self.report['relationshipSets']\n relSetIds = {}\n for i, relationshipSetKey in enumerate(self.relationshipSets):\n arcrole, linkrole, linkqname, arcqname = relationshipSetKey\n if arcrole not in (\"XBRL-formulae\", \"Table-rendering\", \"XBRL-footnotes\") and linkrole and linkqname and arcqname:\n # skip paths and qnames for now (add later for non-SEC)\n relSetId = \"{}/{}\".format(\n os.path.basename(arcrole),\n os.path.basename(linkrole))\n relSetIds[relationshipSetKey] = relSetId\n relationshipSets[relSetId] = relationshipSet = {\n 'arcrole': arcrole,\n 'linkrole': linkrole,\n 'arcname': self.aspectQnameProxyId(arcqname),\n 'linkname': self.aspectQnameProxyId(linkqname),\n 'report': self.reportURI,\n 'roots': [],\n 'relationships': []\n }\n \n # do tree walk to build relationships with depth annotated, no targetRole navigation\n relE = [] # fromV, toV, label\n resources = set()\n aspectQnamesUsed = set()\n resourceIDs = {} # index by object\n \n def walkTree(rels, parentRelId, seq, depth, relationshipSetKey, relationshipSet, visited, relSetId, doVertices):\n for rel in rels:\n if rel not in visited:\n visited.add(rel)\n \n if not doVertices:\n _relProp = {'seq': seq,\n 'depth': depth,\n 'order': rel.orderDecimal,\n 'priority': rel.priority,\n 'relSetId': relSetId\n }\n if isinstance(rel.fromModelObject, ModelConcept):\n if doVertices:\n aspectQnamesUsed.add(rel.fromModelObject.qname)\n sourceUri = True\n else:\n sourceQname = rel.fromModelObject.qname\n sourceUri = self.aspectQnameProxyId(sourceQname)\n sourceId = qnamePrefix_Name(rel.fromModelObject.qname)\n else:\n sourceUri = None # tbd\n toModelObject = rel.toModelObject\n if isinstance(toModelObject, ModelConcept):\n if doVertices:\n aspectQnamesUsed.add(toModelObject.qname)\n targetUri = True\n else:\n targetUri = self.aspectQnameProxyId(toModelObject.qname)\n targetId = qnamePrefix_Name(toModelObject.qname)\n elif isinstance(toModelObject, ModelResource):\n if doVertices:\n resources.add(toModelObject)\n targetUri = 0 # just can't be None, but doesn't matter on doVertices pass\n else:\n if rel.preferredLabel:\n _relProp['preferredLabel'] = rel.preferredLabel\n if rel.arcrole in (XbrlConst.all, XbrlConst.notAll):\n _relProp['cubeClosed'] = rel.closed\n elif rel.arcrole in (XbrlConst.dimensionDomain, XbrlConst.domainMember):\n _relProp['aspectValueUsable'] = rel.usable\n elif rel.arcrole == XbrlConst.summationItem:\n _relProp['weight'] = rel.weightDecimal\n if relationshipSet.arcrole == \"XBRL-dimensions\":\n _relProp['arcrole'] = rel.arcrole\n if toModelObject.role:\n _relProp['resourceRole'] = toModelObject.role\n targetUri = modelObjectUri(toModelObject)\n targetId = toModelObject.modelDocument.basename + '#' + XmlUtil.elementFragmentIdentifier(toModelObject)\n else:\n targetUri = None # tbd\n if sourceUri is not None and targetUri is not None:\n targetRelSetId = relSetId\n targetRelSetKey = relationshipSetKey\n if relationshipSet.arcrole == \"XBRL-dimensions\" and rel.targetRole:\n targetRelSet = self.modelXbrl.relationshipSet(relationshipSet.arcrole, rel.targetRole)\n for i, relSetKey in enumerate(self.relationshipSets):\n arcrole, ELR, linkqname, arcqname = relSetKey\n if arcrole == \"XBRL-dimensions\" and ELR == rel.targetRole:\n targetRelationshipSetId = relSetIds[relSetKey]\n targetRelSetKey = relSetKey\n break\n if not doVertices:\n _relProp['targetLinkrole'] = rel.targetRole\n _relProp['targetRelSet'] = targetRelationshipSetId\n else:\n targetRelSetKey = relationshipSetKey\n targetRelSet = relationshipSet\n if doVertices:\n relId = None\n else:\n _relProp['from'] = sourceUri\n _relProp['fromQname'] = sourceQname\n _relProp['to'] = targetUri\n _arcrole = os.path.basename(rel.arcrole)\n relId = \"{}/{}/{}/{}\".format(\n _arcrole,\n os.path.basename(rel.linkrole),\n sourceId,\n targetId)\n _relProp['relId'] = relId\n _relProp['relSetKey'] = relationshipSetKey\n\n relE.append(_relProp)\n seq += 1\n seq = walkTree(targetRelSet.fromModelObject(toModelObject), relId, seq, depth+1, targetRelSetKey, targetRelSet, visited, targetRelSetId, doVertices)\n visited.remove(rel)\n return seq\n \n\n for doVertices in range(1,-1,-1): # pass 0 = vertices, pass 1 = edges\n for i, relationshipSetKey in enumerate(self.relationshipSets):\n arcrole, linkrole, linkqname, arcqname = relationshipSetKey\n if arcrole not in (\"XBRL-formulae\", \"Table-rendering\", \"XBRL-footnotes\") and linkrole and linkqname and arcqname: \n relSetId = relSetIds[relationshipSetKey]\n relationshipSet = self.modelXbrl.relationshipSet(*relationshipSetKey)\n seq = 1 \n for rootConcept in relationshipSet.rootConcepts:\n seq = walkTree(relationshipSet.fromModelObject(rootConcept), None, seq, 1, relationshipSetKey, relationshipSet, set(), relSetId, doVertices)\n if doVertices:\n if resources:\n for resource in resources:\n resourceUri = modelObjectUri(resource)\n r = {'url': resourceUri,\n 'value': resource.stringValue\n }\n if resource.xmlLang:\n r['language'] = resource.xmlLang\n if resource.role:\n r['role'] = resource.role\n self.documents[modelObjectDocumentUri(resource)]['resources'][\n XmlUtil.elementFragmentIdentifier(resource)] = r\n \n self.insertAspectProxies(aspectQnamesUsed)\n else:\n for j, rel in enumerate(relE):\n relId = rel['relId']\n relSetId = rel['relSetId']\n relSet = relationshipSets[relSetId]\n r = dict((k,v)\n for k,v in rel.items()\n if k not in ('relId', 'relPredicate', 'relSetId', 'relSetKey', 'fromQname'))\n relSet['relationships'].append(r)\n if rel.get('depth', 0) == 1:\n relSet['roots'].append(r)\n sourceQname = rel['fromQname']\n if sourceQname in self.aspect_proxy:\n self.aspect_proxy[sourceQname] \\\n .setdefault('relationships', {}) \\\n .setdefault(rel['relSetId'], []) \\\n .append(rel['to'])\n \n # TBD: do we want to link resources to the dts (by role, class, or otherwise?)\n \n resourceIDs.clear() # dereferemce objects\n resources = None", "metadata": "root.XbrlSemanticJsonDatabaseConnection.insertRelationshipSets", "header": "['class', 'XbrlSemanticJsonDatabaseConnection', '(', ')', ':', '___EOS___']", "index": 733 }, { "content": " def insertValidationResults(self):\n logEntries = []\n for handler in logging.getLogger(\"arelle\").handlers:\n if hasattr(handler, \"dbHandlerLogEntries\"):\n logEntries = handler.dbHandlerLogEntries()\n break\n \n messages = []\n messageRefs = [] # direct link to objects\n for i, logEntry in enumerate(logEntries):\n messageId = \"message/{}\".format(i+1)\n self.report['messages'][messageId] = m = {\n 'code': logEntry['code'],\n 'level': logEntry['level'],\n 'value': logEntry['message']['text'],\n 'report': self.reportURI,\n 'messageId': messageId\n }\n # capture message ref's\n for ref in logEntry['refs']:\n modelObject = self.modelXbrl.modelObject(ref.get('objectId',''))\n # for now just find a concept\n aspectObj = None\n if isinstance(modelObject, ModelFact):\n factId = XmlUtil.elementFragmentIdentifier(modelObject)\n dataPoint = self.report['dataPoints'][factId]\n dataPoint.setdefault('messages', []).append(messageId)\n elif isinstance(modelObject, ModelConcept):\n # be sure there's a proxy\n self.insertAspectProxies( (modelObject.qname,)) # need imediate use of proxy\n self.aspectQnameProxy(modelObject.qname).setdefault('messages', []).append(messageId)\n elif isinstance(modelObject, ModelRelationship):\n ''' TBD\n sourceId = qnamePrefix_Name(modelObject.fromModelObject.qname)\n toModelObject = modelObject.toModelObject\n if isinstance(toModelObject, ModelConcept):\n targetId = qnamePrefix_Name(toModelObject.qname)\n elif isinstance(toModelObject, ModelResource):\n targetId = toModelObject.modelDocument.basename + '#' + XmlUtil.elementFragmentIdentifier(toModelObject)\n else:\n continue\n objUri = URIRef(\"{}/Relationship/{}/{}/{}/{}\".format(\n self.reportURI, \n os.path.basename(modelObject.arcrole),\n os.path.basename(modelObject.linkrole),\n sourceId,\n targetId) )\n '''\n else:\n continue\n \n if messages:\n self.showStatus(\"insert validation messages\")", "metadata": "root.XbrlSemanticJsonDatabaseConnection.insertValidationResults", "header": "['class', 'XbrlSemanticJsonDatabaseConnection', '(', ')', ':', '___EOS___']", "index": 907 } ]

[ { "span": "conn ", "start_line": 76, "start_column": 12, "end_line": 76, "end_column": 16 }, { "span": "entryUri ", "start_line": 304, "start_column": 8, "end_line": 304, "end_column": 16 }, { "span": "filingNumber ", "start_line": 309, "start_column": 41, "end_line": 309, "end_column": 53 }, { "span": "roleType ", "start_line": 516, "start_column": 63, "end_line": 516, "end_column": 71 }, { "span": "arcroleType ", "start_line": 527, "start_column": 66, "end_line": 527, "end_column": 77 }, { "span": "activity ", "start_line": 537, "start_column": 20, "end_line": 537, "end_column": 28 }, { "span": "dimensions ", "start_line": 600, "start_column": 8, "end_line": 600, "end_column": 18 }, { "span": "dimensionIds ", "start_line": 601, "start_column": 8, "end_line": 601, "end_column": 20 }, { "span": "concept ", "start_line": 620, "start_column": 16, "end_line": 620, "end_column": 23 }, { "span": "relId ", "start_line": 886, "start_column": 20, "end_line": 886, "end_column": 25 }, { "span": "messageRefs ", "start_line": 915, "start_column": 8, "end_line": 915, "end_column": 19 }, { "span": "m ", "start_line": 918, "start_column": 49, "end_line": 918, "end_column": 50 }, { "span": "aspectObj ", "start_line": 929, "start_column": 16, "end_line": 929, "end_column": 25 } ]

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[ { "content": " def test_not_matching_origins(self):\n for resp in self.iter_responses('/test_list',origin=\"http://bazz.com\"):\n self.assertFalse(ACL_ORIGIN in resp.headers)", "metadata": "root.AppExtensionRegexp.test_not_matching_origins", "header": "['class', 'AppExtensionRegexp', '(', 'AppConfigTest', ')', ':', '___EOS___']", "index": 110 }, { "content": " def test_unexposed(self):\n for resp in self.iter_responses('/test_unexposed', origin='http://foo.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertFalse(ACL_ORIGIN in resp.headers)", "metadata": "root.AppExtensionList.test_unexposed", "header": "['class', 'AppExtensionList', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 189 }, { "content": " def test_exposed(self):\n for path in '/api/v1/foo', '/api/v1/bar':\n for resp in self.iter_responses(path, origin='http://bar.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertEqual(resp.headers.get(ACL_ORIGIN), 'http://bar.com')\n self.assertEqual(resp.headers.get(ACL_EXPOSE_HEADERS),\n 'X-Total-Count')\n for resp in self.iter_responses(path, origin='http://foo.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertFalse(ACL_ORIGIN in resp.headers)\n self.assertFalse(ACL_EXPOSE_HEADERS in resp.headers)", "metadata": "root.AppExtensionString.test_exposed", "header": "['class', 'AppExtensionString', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 220 }, { "content": " def test_unexposed(self):\n for resp in self.iter_responses('/', origin='http://bar.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertFalse(ACL_ORIGIN in resp.headers)\n self.assertFalse(ACL_EXPOSE_HEADERS in resp.headers)", "metadata": "root.AppExtensionString.test_unexposed", "header": "['class', 'AppExtensionString', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 232 }, { "content": " def test_override(self):\n for resp in self.iter_responses('/api/v1/special', origin='http://foo.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertEqual(resp.headers.get(ACL_ORIGIN), 'http://foo.com')\n\n self.assertFalse(ACL_EXPOSE_HEADERS in resp.headers)\n\n for resp in self.iter_responses('/api/v1/special', origin='http://bar.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertFalse(ACL_ORIGIN in resp.headers)\n self.assertFalse(ACL_EXPOSE_HEADERS in resp.headers)", "metadata": "root.AppExtensionString.test_override", "header": "['class', 'AppExtensionString', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 238 }, { "content": " def test_default(self):\n '''\n By default match all.\n '''\n\n self.app = Flask(__name__)\n CORS(self.app)\n\n @self.app.route('/')\n def index():\n return 'Welcome'\n\n for resp in self.iter_responses('/', origin='http://foo.com'):\n self.assertEqual(resp.status_code, 200)\n self.assertTrue(ACL_ORIGIN in resp.headers)", "metadata": "root.AppExtensionDefault.test_default", "header": "['class', 'AppExtensionDefault', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 262 }, { "content": " def test_index(self):\n '''\n If regex does not match, do not set CORS\n '''\n for resp in self.iter_responses('/', origin='http://foo.bar'):\n self.assertFalse(ACL_ORIGIN in resp.headers)", "metadata": "root.AppExtensionExampleApp.test_index", "header": "['class', 'AppExtensionExampleApp', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 298 }, { "content": " def test_wildcard(self):\n '''\n Match anything matching the path /api/* with an origin\n of 'http://blah.com' or 'http://foo.bar'\n '''\n for origin in ['http://foo.bar', 'http://blah.com']:\n for resp in self.iter_responses('/api/foo', origin=origin):\n self.assertTrue(ACL_ORIGIN in resp.headers)\n self.assertEqual(origin, resp.headers.get(ACL_ORIGIN))", "metadata": "root.AppExtensionExampleApp.test_wildcard", "header": "['class', 'AppExtensionExampleApp', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 305 }, { "content": " def test_exact_match(self):\n '''\n Match anything matching the path /api/* with an origin\n of 'http://blah.com' or 'http://foo.bar'\n '''\n for origin in ['http://foo.bar', 'http://blah.com']:\n for resp in self.iter_responses('/api/', origin=origin):\n self.assertTrue(ACL_ORIGIN in resp.headers)\n self.assertEqual(origin, resp.headers.get(ACL_ORIGIN))", "metadata": "root.AppExtensionExampleApp.test_exact_match", "header": "['class', 'AppExtensionExampleApp', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 315 }, { "content": " def test_compiled_regex(self):\n '''\n Ensure we do not error if the user sepcifies an bad regular\n expression.\n '''\n import re\n self.app = Flask(__name__)\n CORS(self.app, resources=re.compile('/api/.*'))\n\n @self.app.route('/')\n def index():\n return 'Welcome'\n\n @self.app.route('/api/v1')\n def example():\n return 'Welcome'\n\n for resp in self.iter_responses('/'):\n self.assertFalse(ACL_ORIGIN in resp.headers)\n\n for resp in self.iter_responses('/api/v1', origin='http://foo.com'):\n self.assertTrue(ACL_ORIGIN in resp.headers)", "metadata": "root.AppExtensionCompiledRegexp.test_compiled_regex", "header": "['class', 'AppExtensionCompiledRegexp', '(', 'FlaskCorsTestCase', ')', ':', '___EOS___']", "index": 327 } ]

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[ { "content": "# -*- coding: utf-8 -*-\n\n'''\n Specto Add-on\n Copyright (C) 2015 lambda\n\n This program is free software: you can redistribute it and/or modify\n it under the terms of the GNU General Public License as published by\n the Free Software Foundation, either version 3 of the License, or\n (at your option) any later version.\n\n This program is distributed in the hope that it will be useful,\n but WITHOUT ANY WARRANTY; without even the implied warranty of\n MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n GNU General Public License for more details.\n\n You should have received a copy of the GNU General Public License\n along with this program. If not, see <http://www.gnu.org/licenses/>.\n'''\n\n\nimport re,hashlib,time, json\n\ntry:\n from sqlite3 import dbapi2 as database\nexcept:\n from pysqlite2 import dbapi2 as database\n\nfrom resources.lib.libraries import control\n\n\n\n\n\n\n#def getMovieSource(self, title, year, imdb, source, call):\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def get(function, timeout, *args, **table):\n try:\n response = None\n\n f = repr(function)\n f = re.sub('.+\\smethod\\s|.+function\\s|\\sat\\s.+|\\sof\\s.+', '', f)\n\n a = hashlib.md5()\n for i in args: a.update(str(i))\n a = str(a.hexdigest())\n except:\n pass\n\n try:\n table = table['table']\n except:\n table = 'rel_list'\n\n try:\n control.makeFile(control.dataPath)\n dbcon = database.connect(control.cacheFile)\n dbcur = dbcon.cursor()\n dbcur.execute(\"SELECT * FROM %s WHERE func = '%s' AND args = '%s'\" % (table, f, a))\n match = dbcur.fetchone()\n\n response = eval(match[2].encode('utf-8'))\n\n t1 = int(match[3])\n t2 = int(time.time())\n update = (abs(t2 - t1) / 3600) >= int(timeout)\n if update == False:\n return response\n except:\n pass\n\n try:\n r = function(*args)\n if (r == None or r == []) and not response == None:\n return response\n elif (r == None or r == []):\n return r\n except:\n return\n\n try:\n r = repr(r)\n t = int(time.time())\n dbcur.execute(\"CREATE TABLE IF NOT EXISTS %s (\"\"func TEXT, \"\"args TEXT, \"\"response TEXT, \"\"added TEXT, \"\"UNIQUE(func, args)\"\");\" % table)\n dbcur.execute(\"DELETE FROM %s WHERE func = '%s' AND args = '%s'\" % (table, f, a))\n dbcur.execute(\"INSERT INTO %s Values (?, ?, ?, ?)\" % table, (f, a, r, t))\n dbcon.commit()\n except:\n pass\n\n try:\n return eval(r.encode('utf-8'))\n except:\n pass", "metadata": "root.get", "header": "['module', '___EOS___']", "index": 31 }, { "content": "def clear(table=None):\n try:\n control.idle()\n\n if table == None: table = ['rel_list', 'rel_lib']\n elif not type(table) == list: table = [table]\n\n yes = control.yesnoDialog(control.lang(30401).encode('utf-8'), '', '')\n if not yes: return\n\n dbcon = database.connect(control.cacheFile)\n dbcur = dbcon.cursor()\n\n for t in table:\n try:\n dbcur.execute(\"DROP TABLE IF EXISTS %s\" % t)\n dbcur.execute(\"VACUUM\")\n dbcon.commit()\n except:\n pass\n\n control.infoDialog(control.lang(30402).encode('utf-8'))\n except:\n pass", "metadata": "root.clear", "header": "['module', '___EOS___']", "index": 91 }, { "content": "def get_cached_url(self, url, data='', cache_limit=8):\n try:\n dbcon = database.connect(control.sourcescachedUrl)\n dbcur = dbcon.cursor()\n\n #dbcur.execute(\n # \"CREATE TABLE IF NOT EXISTS rel_url (\"\"source TEXT, \"\"imdb_id TEXT, \"\"season TEXT, \"\"episode TEXT, \"\"rel_url TEXT, \"\"UNIQUE(source, imdb_id, season, episode)\"\");\")\n dbcur.execute(\n \"CREATE TABLE IF NOT EXISTS url_cache (url VARCHAR(255) NOT NULL, data VARCHAR(255), response, res_header, timestamp, PRIMARY KEY(url, data))\")\n except:\n pass\n\n try:\n if data is None: data = ''\n html = ''\n res_header = []\n created = 0\n now = time.time()\n age = now - created\n limit = 60 * 60 * cache_limit\n dbcur.execute('SELECT timestamp, response, res_header FROM url_cache WHERE url = %s and data=%s' % (url,data))\n rows = dbcur.fetchall()\n control.log('DB ROWS: Url: %s, ' % (rows))\n\n if rows:\n created = float(rows[0][0])\n res_header = json.loads(rows[0][2])\n age = now - created\n if age < limit:\n html = rows[0][1]\n control.log('DB Cache: Url: %s, Data: %s, Cache Hit: %s, created: %s, age: %.2fs (%.2fh), limit: %ss' % (\n url, data, bool(html), created, age, age / (60 * 60), limit))\n return created, res_header, html\n except:\n return", "metadata": "root.get_cached_url", "header": "['module', '___EOS___']", "index": 118 }, { "content": "def cache_url(self, url, body, data=None, res_header=None):\n try:\n dbcon = database.connect(control.sourcescachedUrl)\n dbcur = dbcon.cursor()\n dbcur.execute(\n \"CREATE TABLE IF NOT EXISTS url_cache (url VARCHAR(255) NOT NULL, data VARCHAR(255), response, res_header, timestamp, PRIMARY KEY(url, data))\")\n except:\n pass\n try:\n now = time.time()\n if data is None: data = ''\n if res_header is None: res_header = []\n res_header = json.dumps(res_header)\n # truncate data if running mysql and greater than col size\n sql = \"REPLACE INTO url_cache (url, data, response, res_header, timestamp) VALUES(?, ?, ?, ?, ?)\" % (url, data, body, res_header, now)\n #dbcur.execute(\"DELETE FROM url_cache WHERE func = '%s' AND args = '%s'\" % (table, f, a))\n #dbcur.execute(\"INSERT INTO %s Values (?, ?, ?, ?)\" % table, (f, a, r, t))\n dbcur.execute(sql)\n dbcon.commit()\n except:\n pass", "metadata": "root.cache_url", "header": "['module', '___EOS___']", "index": 155 }, { "content": "def timeout(function, *args, **table):\n try:\n response = None\n\n f = repr(function)\n f = re.sub('.+\\smethod\\s|.+function\\s|\\sat\\s.+|\\sof\\s.+', '', f)\n\n a = hashlib.md5()\n for i in args: a.update(str(i))\n a = str(a.hexdigest())\n except:\n pass\n\n try:\n table = table['table']\n except:\n table = 'rel_list'\n\n try:\n control.makeFile(control.dataPath)\n dbcon = database.connect(control.cacheFile)\n dbcur = dbcon.cursor()\n dbcur.execute(\"SELECT * FROM %s WHERE func = '%s' AND args = '%s'\" % (table, f, a))\n match = dbcur.fetchone()\n return int(match[3])\n except:\n return", "metadata": "root.timeout", "header": "['module', '___EOS___']", "index": 177 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2 ]

[ { "content": "# vim: tabstop=4 shiftwidth=4 softtabstop=4\n\n# Copyright 2011 OpenStack LLC.\n# All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\"); you may\n# not use this file except in compliance with the License. You may obtain\n# a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS, WITHOUT\n# WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the\n# License for the specific language governing permissions and limitations\n# under the License.\n\nimport json\nimport os.path\nimport webob\nfrom lxml import etree\n\nfrom nova import context\nfrom nova import test\nfrom nova.api import openstack\nfrom nova.api.openstack import extensions\nfrom nova.api.openstack import flavors\nfrom nova.api.openstack import wsgi\nfrom nova.api.openstack import xmlutil\nfrom nova.tests.api.openstack import fakes\n\nNS = \"{http://docs.openstack.org/compute/api/v1.1}\"\nATOMNS = \"{http://www.w3.org/2005/Atom}\"\nresponse_body = \"Try to say this Mr. Knox, sir...\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class StubController(object):\n\n", "metadata": "root.StubController", "header": "['module', '___EOS___']", "index": 36 }, { "content": " def __init__(self, body):\n self.body = body", "metadata": "root.StubController.__init__", "header": "['class', 'StubController', '(', 'object', ')', ':', '___EOS___']", "index": 38 }, { "content": " def index(self, req):\n return self.body", "metadata": "root.StubController.index", "header": "['class', 'StubController', '(', 'object', ')', ':', '___EOS___']", "index": 41 }, { "content": "class StubExtensionManager(object):\n\n\n\n\n\n\n", "metadata": "root.StubExtensionManager", "header": "['module', '___EOS___']", "index": 45 }, { "content": " def __init__(self, resource_ext=None, action_ext=None, request_ext=None):\n self.resource_ext = resource_ext\n self.action_ext = action_ext\n self.request_ext = request_ext", "metadata": "root.StubExtensionManager.__init__", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 47 }, { "content": " def get_name(self):\n return \"Tweedle Beetle Extension\"", "metadata": "root.StubExtensionManager.get_name", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 52 }, { "content": " def get_alias(self):\n return \"TWDLBETL\"", "metadata": "root.StubExtensionManager.get_alias", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 55 }, { "content": " def get_description(self):\n return \"Provides access to Tweedle Beetles\"", "metadata": "root.StubExtensionManager.get_description", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 58 }, { "content": " def get_resources(self):\n resource_exts = []\n if self.resource_ext:\n resource_exts.append(self.resource_ext)\n return resource_exts", "metadata": "root.StubExtensionManager.get_resources", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 61 }, { "content": " def get_actions(self):\n action_exts = []\n if self.action_ext:\n action_exts.append(self.action_ext)\n return action_exts", "metadata": "root.StubExtensionManager.get_actions", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 67 }, { "content": " def get_request_extensions(self):\n request_extensions = []\n if self.request_ext:\n request_extensions.append(self.request_ext)\n return request_extensions", "metadata": "root.StubExtensionManager.get_request_extensions", "header": "['class', 'StubExtensionManager', '(', 'object', ')', ':', '___EOS___']", "index": 73 }, { "content": "class ExtensionControllerTest(test.TestCase):\n\n\n\n\n\n", "metadata": "root.ExtensionControllerTest", "header": "['module', '___EOS___']", "index": 80 }, { "content": " def setUp(self):\n super(ExtensionControllerTest, self).setUp()\n ext_path = os.path.join(os.path.dirname(__file__), \"extensions\")\n self.flags(osapi_extensions_path=ext_path)\n self.ext_list = [\n \"Createserverext\",\n \"FlavorExtraSpecs\",\n \"FlavorExtraData\",\n \"Floating_ips\",\n \"Fox In Socks\",\n \"Hosts\",\n \"Keypairs\",\n \"Multinic\",\n \"Quotas\",\n \"Rescue\",\n \"SecurityGroups\",\n \"SimpleTenantUsage\",\n \"VSAs\",\n \"VirtualInterfaces\",\n \"Volumes\",\n \"VolumeTypes\",\n ]\n self.ext_list.sort()", "metadata": "root.ExtensionControllerTest.setUp", "header": "['class', 'ExtensionControllerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 82 }, { "content": " def test_list_extensions_json(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/123/extensions\")\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n\n # Make sure we have all the extensions.\n data = json.loads(response.body)\n names = [x['name'] for x in data['extensions']]\n names.sort()\n self.assertEqual(names, self.ext_list)\n\n # Make sure that at least Fox in Sox is correct.\n (fox_ext, ) = [\n x for x in data['extensions'] if x['alias'] == 'FOXNSOX']\n self.assertEqual(fox_ext, {\n 'namespace': 'http://www.fox.in.socks/api/ext/pie/v1.0',\n 'name': 'Fox In Socks',\n 'updated': '2011-01-22T13:25:27-06:00',\n 'description': 'The Fox In Socks Extension',\n 'alias': 'FOXNSOX',\n 'links': []\n },\n )", "metadata": "root.ExtensionControllerTest.test_list_extensions_json", "header": "['class', 'ExtensionControllerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 106 }, { "content": " def test_get_extension_json(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/123/extensions/FOXNSOX\")\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n\n data = json.loads(response.body)\n self.assertEqual(data['extension'], {\n \"namespace\": \"http://www.fox.in.socks/api/ext/pie/v1.0\",\n \"name\": \"Fox In Socks\",\n \"updated\": \"2011-01-22T13:25:27-06:00\",\n \"description\": \"The Fox In Socks Extension\",\n \"alias\": \"FOXNSOX\",\n \"links\": []})", "metadata": "root.ExtensionControllerTest.test_get_extension_json", "header": "['class', 'ExtensionControllerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 132 }, { "content": " def test_get_non_existing_extension_json(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/123/extensions/4\")\n response = request.get_response(ext_midware)\n self.assertEqual(404, response.status_int)", "metadata": "root.ExtensionControllerTest.test_get_non_existing_extension_json", "header": "['class', 'ExtensionControllerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 148 }, { "content": " def test_list_extensions_xml(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/123/extensions\")\n request.accept = \"application/xml\"\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n print response.body\n\n root = etree.XML(response.body)\n self.assertEqual(root.tag.split('extensions')[0], NS)\n\n # Make sure we have all the extensions.\n exts = root.findall('{0}extension'.format(NS))\n self.assertEqual(len(exts), len(self.ext_list))\n\n # Make sure that at least Fox in Sox is correct.\n (fox_ext, ) = [x for x in exts if x.get('alias') == 'FOXNSOX']\n self.assertEqual(fox_ext.get('name'), 'Fox In Socks')\n self.assertEqual(fox_ext.get('namespace'),\n 'http://www.fox.in.socks/api/ext/pie/v1.0')\n self.assertEqual(fox_ext.get('updated'), '2011-01-22T13:25:27-06:00')\n self.assertEqual(fox_ext.findtext('{0}description'.format(NS)),\n 'The Fox In Socks Extension')\n\n xmlutil.validate_schema(root, 'extensions')", "metadata": "root.ExtensionControllerTest.test_list_extensions_xml", "header": "['class', 'ExtensionControllerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 155 }, { "content": " def test_get_extension_xml(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/123/extensions/FOXNSOX\")\n request.accept = \"application/xml\"\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n xml = response.body\n print xml\n\n root = etree.XML(xml)\n self.assertEqual(root.tag.split('extension')[0], NS)\n self.assertEqual(root.get('alias'), 'FOXNSOX')\n self.assertEqual(root.get('name'), 'Fox In Socks')\n self.assertEqual(root.get('namespace'),\n 'http://www.fox.in.socks/api/ext/pie/v1.0')\n self.assertEqual(root.get('updated'), '2011-01-22T13:25:27-06:00')\n self.assertEqual(root.findtext('{0}description'.format(NS)),\n 'The Fox In Socks Extension')\n\n xmlutil.validate_schema(root, 'extension')", "metadata": "root.ExtensionControllerTest.test_get_extension_xml", "header": "['class', 'ExtensionControllerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 182 }, { "content": "class ResourceExtensionTest(test.TestCase):\n\n\n\n", "metadata": "root.ResourceExtensionTest", "header": "['module', '___EOS___']", "index": 205 }, { "content": " def setUp(self):\n super(ResourceExtensionTest, self).setUp()\n ext_path = os.path.join(os.path.dirname(__file__), \"extensions\")\n self.flags(osapi_extensions_path=ext_path)", "metadata": "root.ResourceExtensionTest.setUp", "header": "['class', 'ResourceExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 207 }, { "content": " def test_no_extension_present(self):\n manager = StubExtensionManager(None)\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app, manager)\n request = webob.Request.blank(\"/blah\")\n response = request.get_response(ext_midware)\n self.assertEqual(404, response.status_int)", "metadata": "root.ResourceExtensionTest.test_no_extension_present", "header": "['class', 'ResourceExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 212 }, { "content": " def test_get_resources(self):\n res_ext = extensions.ResourceExtension('tweedles',\n StubController(response_body))\n manager = StubExtensionManager(res_ext)\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app, manager)\n request = webob.Request.blank(\"/123/tweedles\")\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n self.assertEqual(response_body, response.body)", "metadata": "root.ResourceExtensionTest.test_get_resources", "header": "['class', 'ResourceExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 220 }, { "content": " def test_get_resources_with_controller(self):\n res_ext = extensions.ResourceExtension('tweedles',\n StubController(response_body))\n manager = StubExtensionManager(res_ext)\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app, manager)\n request = webob.Request.blank(\"/123/tweedles\")\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n self.assertEqual(response_body, response.body)", "metadata": "root.ResourceExtensionTest.test_get_resources_with_controller", "header": "['class', 'ResourceExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 231 }, { "content": "class InvalidExtension(object):\n", "metadata": "root.InvalidExtension", "header": "['module', '___EOS___']", "index": 243 }, { "content": " def get_alias(self):\n return \"THIRD\"", "metadata": "root.InvalidExtension.get_alias", "header": "['class', 'InvalidExtension', '(', 'object', ')', ':', '___EOS___']", "index": 245 }, { "content": "class ExtensionManagerTest(test.TestCase):\n\n response_body = \"Try to say this Mr. Knox, sir...\"\n\n\n", "metadata": "root.ExtensionManagerTest", "header": "['module', '___EOS___']", "index": 249 }, { "content": " def setUp(self):\n super(ExtensionManagerTest, self).setUp()\n ext_path = os.path.join(os.path.dirname(__file__), \"extensions\")\n self.flags(osapi_extensions_path=ext_path)", "metadata": "root.ExtensionManagerTest.setUp", "header": "['class', 'ExtensionManagerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 253 }, { "content": " def test_get_resources(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/123/foxnsocks\")\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n self.assertEqual(response_body, response.body)", "metadata": "root.ExtensionManagerTest.test_get_resources", "header": "['class', 'ExtensionManagerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 258 }, { "content": " def test_invalid_extensions(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n ext_mgr = ext_midware.ext_mgr\n ext_mgr.add_extension(InvalidExtension())\n self.assertTrue('FOXNSOX' in ext_mgr.extensions)\n self.assertTrue('THIRD' not in ext_mgr.extensions)", "metadata": "root.ExtensionManagerTest.test_invalid_extensions", "header": "['class', 'ExtensionManagerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 266 }, { "content": "class ActionExtensionTest(test.TestCase):\n\n\n\n\n", "metadata": "root.ActionExtensionTest", "header": "['module', '___EOS___']", "index": 275 }, { "content": " def setUp(self):\n super(ActionExtensionTest, self).setUp()\n ext_path = os.path.join(os.path.dirname(__file__), \"extensions\")\n self.flags(osapi_extensions_path=ext_path)", "metadata": "root.ActionExtensionTest.setUp", "header": "['class', 'ActionExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 277 }, { "content": " def _send_server_action_request(self, url, body):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(url)\n request.method = 'POST'\n request.content_type = 'application/json'\n request.body = json.dumps(body)\n response = request.get_response(ext_midware)\n return response", "metadata": "root.ActionExtensionTest._send_server_action_request", "header": "['class', 'ActionExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 282 }, { "content": " def test_extended_action(self):\n body = dict(add_tweedle=dict(name=\"test\"))\n url = \"/123/servers/1/action\"\n response = self._send_server_action_request(url, body)\n self.assertEqual(200, response.status_int)\n self.assertEqual(\"Tweedle Beetle Added.\", response.body)\n\n body = dict(delete_tweedle=dict(name=\"test\"))\n response = self._send_server_action_request(url, body)\n self.assertEqual(200, response.status_int)\n self.assertEqual(\"Tweedle Beetle Deleted.\", response.body)", "metadata": "root.ActionExtensionTest.test_extended_action", "header": "['class', 'ActionExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 292 }, { "content": " def test_invalid_action_body(self):\n body = dict(blah=dict(name=\"test\")) # Doesn't exist\n url = \"/123/servers/1/action\"\n response = self._send_server_action_request(url, body)\n self.assertEqual(400, response.status_int)", "metadata": "root.ActionExtensionTest.test_invalid_action_body", "header": "['class', 'ActionExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 304 }, { "content": " def test_invalid_action(self):\n body = dict(blah=dict(name=\"test\"))\n url = \"/123/fdsa/1/action\"\n response = self._send_server_action_request(url, body)\n self.assertEqual(404, response.status_int)", "metadata": "root.ActionExtensionTest.test_invalid_action", "header": "['class', 'ActionExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 310 }, { "content": "class RequestExtensionTest(test.TestCase):\n\n\n", "metadata": "root.RequestExtensionTest", "header": "['module', '___EOS___']", "index": 317 }, { "content": " def setUp(self):\n super(RequestExtensionTest, self).setUp()\n ext_path = os.path.join(os.path.dirname(__file__), \"extensions\")\n self.flags(osapi_extensions_path=ext_path)", "metadata": "root.RequestExtensionTest.setUp", "header": "['class', 'RequestExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 319 }, { "content": " def test_get_resources_with_stub_mgr(self):\n\n def _req_handler(req, res):\n # only handle JSON responses\n data = json.loads(res.body)\n data['flavor']['googoose'] = req.GET.get('chewing')\n res.body = json.dumps(data)\n return res\n\n req_ext = extensions.RequestExtension('GET',\n '/v1.1/123/flavors/:(id)',\n _req_handler)\n\n manager = StubExtensionManager(None, None, req_ext)\n app = fakes.wsgi_app()\n ext_midware = extensions.ExtensionMiddleware(app, manager)\n request = webob.Request.blank(\"/v1.1/123/flavors/1?chewing=bluegoo\")\n request.environ['api.version'] = '1.1'\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n response_data = json.loads(response.body)\n self.assertEqual('bluegoo', response_data['flavor']['googoose'])", "metadata": "root.RequestExtensionTest.test_get_resources_with_stub_mgr", "header": "['class', 'RequestExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 324 }, { "content": " def test_get_resources_with_mgr(self):\n\n app = fakes.wsgi_app()\n ext_midware = extensions.ExtensionMiddleware(app)\n request = webob.Request.blank(\"/v1.1/123/flavors/1?chewing=newblue\")\n request.environ['api.version'] = '1.1'\n response = request.get_response(ext_midware)\n self.assertEqual(200, response.status_int)\n response_data = json.loads(response.body)\n self.assertEqual('newblue', response_data['flavor']['googoose'])\n self.assertEqual(\"Pig Bands!\", response_data['big_bands'])", "metadata": "root.RequestExtensionTest.test_get_resources_with_mgr", "header": "['class', 'RequestExtensionTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 347 }, { "content": "class ExtensionsXMLSerializerTest(test.TestCase):\n\n", "metadata": "root.ExtensionsXMLSerializerTest", "header": "['module', '___EOS___']", "index": 360 }, { "content": " def test_serialize_extenstion(self):\n serializer = extensions.ExtensionsXMLSerializer()\n data = {'extension': {\n 'name': 'ext1',\n 'namespace': 'http://docs.rack.com/servers/api/ext/pie/v1.0',\n 'alias': 'RS-PIE',\n 'updated': '2011-01-22T13:25:27-06:00',\n 'description': 'Adds the capability to share an image.',\n 'links': [{'rel': 'describedby',\n 'type': 'application/pdf',\n 'href': 'http://docs.rack.com/servers/api/ext/cs.pdf'},\n {'rel': 'describedby',\n 'type': 'application/vnd.sun.wadl+xml',\n 'href': 'http://docs.rack.com/servers/api/ext/cs.wadl'}]}}\n\n xml = serializer.serialize(data, 'show')\n print xml\n root = etree.XML(xml)\n ext_dict = data['extension']\n self.assertEqual(root.findtext('{0}description'.format(NS)),\n ext_dict['description'])\n\n for key in ['name', 'namespace', 'alias', 'updated']:\n self.assertEqual(root.get(key), ext_dict[key])\n\n link_nodes = root.findall('{0}link'.format(ATOMNS))\n self.assertEqual(len(link_nodes), 2)\n for i, link in enumerate(ext_dict['links']):\n for key, value in link.items():\n self.assertEqual(link_nodes[i].get(key), value)\n\n xmlutil.validate_schema(root, 'extension')", "metadata": "root.ExtensionsXMLSerializerTest.test_serialize_extenstion", "header": "['class', 'ExtensionsXMLSerializerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 362 }, { "content": " def test_serialize_extensions(self):\n serializer = extensions.ExtensionsXMLSerializer()\n data = {\"extensions\": [{\n \"name\": \"Public Image Extension\",\n \"namespace\": \"http://foo.com/api/ext/pie/v1.0\",\n \"alias\": \"RS-PIE\",\n \"updated\": \"2011-01-22T13:25:27-06:00\",\n \"description\": \"Adds the capability to share an image.\",\n \"links\": [{\"rel\": \"describedby\",\n \"type\": \"application/pdf\",\n \"type\": \"application/vnd.sun.wadl+xml\",\n \"href\": \"http://foo.com/api/ext/cs-pie.pdf\"},\n {\"rel\": \"describedby\",\n \"type\": \"application/vnd.sun.wadl+xml\",\n \"href\": \"http://foo.com/api/ext/cs-pie.wadl\"}]},\n {\"name\": \"Cloud Block Storage\",\n \"namespace\": \"http://foo.com/api/ext/cbs/v1.0\",\n \"alias\": \"RS-CBS\",\n \"updated\": \"2011-01-12T11:22:33-06:00\",\n \"description\": \"Allows mounting cloud block storage.\",\n \"links\": [{\"rel\": \"describedby\",\n \"type\": \"application/pdf\",\n \"href\": \"http://foo.com/api/ext/cs-cbs.pdf\"},\n {\"rel\": \"describedby\",\n \"type\": \"application/vnd.sun.wadl+xml\",\n \"href\": \"http://foo.com/api/ext/cs-cbs.wadl\"}]}]}\n\n xml = serializer.serialize(data, 'index')\n print xml\n root = etree.XML(xml)\n ext_elems = root.findall('{0}extension'.format(NS))\n self.assertEqual(len(ext_elems), 2)\n for i, ext_elem in enumerate(ext_elems):\n ext_dict = data['extensions'][i]\n self.assertEqual(ext_elem.findtext('{0}description'.format(NS)),\n ext_dict['description'])\n\n for key in ['name', 'namespace', 'alias', 'updated']:\n self.assertEqual(ext_elem.get(key), ext_dict[key])\n\n link_nodes = ext_elem.findall('{0}link'.format(ATOMNS))\n self.assertEqual(len(link_nodes), 2)\n for i, link in enumerate(ext_dict['links']):\n for key, value in link.items():\n self.assertEqual(link_nodes[i].get(key), value)\n\n xmlutil.validate_schema(root, 'extensions')", "metadata": "root.ExtensionsXMLSerializerTest.test_serialize_extensions", "header": "['class', 'ExtensionsXMLSerializerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 395 } ]

[ { "span": "from nova import context", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 24 }, { "span": "from nova.api.openstack import flavors", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 38 }, { "span": "from nova.api.openstack import wsgi", "start_line": 27, "start_column": 0, "end_line": 27, "end_column": 35 } ]

[]

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"\\u\\u\\uNL\\u\\u\\u_", "#", " ", " ", " ", " ", "License", " ", "for", " ", "the", " ", "specific", " ", "language", " ", "govern", "ing", " ", "permissi", "ons", " ", "and", " ", "limit", "ations_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", " ", " ", " ", "under", " ", "the", " ", "License", "._", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "import_", "json_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "os_", "._", "path_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "import_", "webob_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "lxml_", "import_", "etree_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "from_", "nova_", "import_", "context_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "nova_", "import_", "test_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "nova_", "._", "api_", "import_", "openstack_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "nova_", "._", "api_", "._", "openstack_", "import_", "extensions_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "from_", "nova_", "._", "api_", "._", "openstack_", "import_", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "from django.shortcuts import render\nfrom django.core import serializers\nfrom django.http import HttpResponse\nfrom django.contrib.auth.models import User\nfrom django.contrib.auth import authenticate, login, logout\nfrom django.contrib.auth.decorators import login_required\nfrom django.conf import settings\nfrom registrar.models import Course\nfrom registrar.models import Student\nfrom registrar.models import Assignment\nfrom registrar.models import AssignmentSubmission\nfrom registrar.models import EssayQuestion\nfrom registrar.models import EssaySubmission\nfrom registrar.models import MultipleChoiceQuestion\nfrom registrar.models import MultipleChoiceSubmission\nfrom registrar.models import ResponseQuestion\nfrom registrar.models import ResponseSubmission\nfrom registrar.models import TrueFalseQuestion\nfrom registrar.models import TrueFalseSubmission\nimport json\nimport datetime\n\n# Forms\nfrom student.forms import EssaySubmissionForm\nfrom student.forms import AssignmentSubmissionForm\n\n\n# Private Functions\n\n\n\n# Public Functions\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n#-------------------#\n# Private Functions #\n#-------------------#\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def get_submitted_assignments(course, student):\n # Fetch all the assignments for this course.\n try:\n assignments = Assignment.objects.filter(course=course).order_by('assignment_num')\n except Assignment.DoesNotExist:\n assignment = None\n \n # Fetch all submitted assignments\n try:\n submitted_assignments = AssignmentSubmission.objects.filter(\n assignment__course=course,\n student=student\n )\n except AssignmentSubmission.DoesNotExist:\n submitted_assignments = None\n\n # If the submissions & assignment counts do not equal, then we have to\n # iterate through all the assignments and create the missing 'submission'\n # entries for our system.\n if len(assignments) != len(submitted_assignments):\n for assignment in assignments:\n found_assignment = False\n for submitted_assignment in submitted_assignments:\n if assignment.assignment_id == submitted_assignment.assignment_id:\n found_assignment = True\n if not found_assignment:\n submission = AssignmentSubmission.objects.create(\n student=student,\n assignment=assignment,\n )\n submission.save()\n # Once we saved the data, we will have to fetch the results again.\n submitted_assignments = AssignmentSubmission.objects.filter(\n assignment__course=course,\n student=student\n )\n return submitted_assignments", "metadata": "root.get_submitted_assignments", "header": "['module', '___EOS___']", "index": 29 }, { "content": "@login_required(login_url='/landpage')\ndef assignments_page(request, course_id):\n course = Course.objects.get(id=course_id)\n student = Student.objects.get(user=request.user)\n return render(request, 'course/assignment/assignments_view.html',{\n 'course' : course,\n 'submitted_assignments': get_submitted_assignments(course, student),\n 'user' : request.user,\n 'tab' : 'assignments',\n 'subtab' : '',\n 'HAS_ADVERTISMENT': settings.APPLICATION_HAS_ADVERTISMENT,\n 'local_css_urls' : settings.SB_ADMIN_2_CSS_LIBRARY_URLS,\n 'local_js_urls' : settings.SB_ADMIN_2_JS_LIBRARY_URLS,\n })", "metadata": "root.assignments_page", "header": "['module', '___EOS___']", "index": 71 }, { "content": "@login_required(login_url='/landpage')\ndef assignments_table(request, course_id):\n course = Course.objects.get(id=course_id)\n student = Student.objects.get(user=request.user)\n return render(request, 'course/assignment/assignments_table.html',{\n 'course' : course,\n 'user' : request.user,\n 'submitted_assignments': get_submitted_assignments(course, student),\n 'ESSAY_QUESTION_TYPE' : settings.ESSAY_QUESTION_TYPE,\n 'MULTIPLECHOICE_QUESTION_TYPE' : settings.MULTIPLECHOICE_QUESTION_TYPE,\n 'TRUEFALSE_QUESTION_TYPE' : settings.TRUEFALSE_QUESTION_TYPE,\n 'RESPONSE_QUESTION_TYPE' : settings.RESPONSE_QUESTION_TYPE,\n })", "metadata": "root.assignments_table", "header": "['module', '___EOS___']", "index": 87 }, { "content": "@login_required(login_url='/landpage')\ndef assignment_page(request, course_id, assignment_id):\n course = Course.objects.get(id=course_id)\n student = Student.objects.get(user=request.user)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n \n # Load all essay type questions for this assignment.\n try:\n e_questions = EssayQuestion.objects.filter(assignment=assignment).order_by('question_num')\n except EssayQuestion.DoesNotExist:\n e_questions = None\n try:\n e_submissions = EssaySubmission.objects.filter(question__assignment=assignment, student=student)\n except EssayQuestion.DoesNotExist:\n e_submissions = None\n\n # Load all multiple-choice type questions/submissions for this assignment.\n try:\n mc_questions = MultipleChoiceQuestion.objects.filter(assignment=assignment).order_by('question_num')\n except MultipleChoiceQuestion.DoesNotExist:\n mc_questions = None\n try:\n mc_submissions = MultipleChoiceSubmission.objects.filter(question__assignment=assignment, student=student)\n except MultipleChoiceSubmission.DoesNotExist:\n mc_submissions = None\n\n # Load all true/false type questions/submissions for this assignment.\n try:\n tf_questions = TrueFalseQuestion.objects.filter(assignment=assignment).order_by('question_num')\n except TrueFalseQuestion.DoesNotExist:\n tf_questions = None\n try:\n tf_submissions = TrueFalseSubmission.objects.filter(question__assignment=assignment, student=student)\n except tf_submissions.DoesNotExist:\n tf_submissions = None\n\n # Load all response type questions for this assignment.\n try:\n r_questions = ResponseQuestion.objects.filter(assignment=assignment).order_by('question_num')\n except ResponseQuestion.DoesNotExist:\n r_questions = None\n try:\n r_submissions = ResponseSubmission.objects.filter(question__assignment=assignment, student=student)\n except ResponseQuestion.DoesNotExist:\n r_submissions = None\n\n return render(request, 'course/assignment/question_view.html',{\n 'student': student,\n 'course': course,\n 'assignment': assignment,\n 'e_questions': e_questions,\n 'e_submissions': e_submissions,\n 'mc_questions': mc_questions,\n 'mc_submissions': mc_submissions,\n 'tf_questions': tf_questions,\n 'tf_submissions': tf_submissions,\n 'r_questions': r_questions,\n 'r_submissions': r_submissions,\n 'ESSAY_QUESTION_TYPE': settings.ESSAY_QUESTION_TYPE,\n 'MULTIPLECHOICE_QUESTION_TYPE': settings.MULTIPLECHOICE_QUESTION_TYPE,\n 'TRUEFALSE_QUESTION_TYPE': settings.TRUEFALSE_QUESTION_TYPE,\n 'RESPONSE_QUESTION_TYPE': settings.RESPONSE_QUESTION_TYPE,\n 'user': request.user,\n 'tab': 'assignment',\n 'HAS_ADVERTISMENT': settings.APPLICATION_HAS_ADVERTISMENT,\n 'local_css_urls': settings.SB_ADMIN_2_CSS_LIBRARY_URLS,\n 'local_js_urls': settings.SB_ADMIN_2_JS_LIBRARY_URLS,\n })", "metadata": "root.assignment_page", "header": "['module', '___EOS___']", "index": 102 }, { "content": "@login_required()\ndef delete_assignment(request, course_id):\n response_data = {'status' : 'failed', 'message' : 'unknown error with deletion'}\n if request.is_ajax():\n if request.method == 'POST':\n assignment_id = int(request.POST['assignment_id'])\n course = Course.objects.get(id=course_id)\n student = Student.objects.get(user=request.user)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n\n # Set 'is_finished' to false to indicate we need to take the\n # assignment all over.\n try:\n submission = AssignmentSubmission.objects.get(\n student=student,\n assignment=assignment,\n )\n submission.is_finished = False\n submission.save()\n except AssignmentSubmission.DoesNotExist:\n return HttpResponse(json.dumps({\n 'status' : 'failed',\n 'message' : 'record does not exist'\n }), content_type=\"application/json\")\n\n # Delete all previous entries.\n try:\n e_submissions = EssaySubmission.objects.filter(question__assignment=assignment, student=student)\n e_submissions.delete()\n except EssayQuestion.DoesNotExist:\n pass\n try:\n mc_submissions = MultipleChoiceSubmission.objects.filter(question__assignment=assignment, student=student)\n mc_submissions.delete()\n except MultipleChoiceSubmission.DoesNotExist:\n pass\n try:\n tf_submissions = TrueFalseSubmission.objects.filter(question__assignment=assignment, student=student)\n tf_submissions.delete()\n except tf_submissions.DoesNotExist:\n pass\n try:\n r_submissions = ResponseSubmission.objects.filter(question__assignment=assignment, student=student)\n r_submissions.delete()\n except ResponseQuestion.DoesNotExist:\n pass\n\n response_data = {'status' : 'success', 'message' : 'assignment was deleted'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.delete_assignment", "header": "['module', '___EOS___']", "index": 173 }, { "content": "@login_required()\ndef submit_e_assignment_answer(request, course_id, assignment_id):\n response_data = {'status' : 'failed', 'message' : 'error submitting'}\n if request.is_ajax():\n if request.method == 'POST':\n # Extract parameters from post\n question_id = int(request.POST['question_id'])\n try:\n file = request.FILES[\"file\"]\n except:\n response_data = {'status' : 'failed', 'message' : 'missing file'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")\n \n # Fetch from database\n course = Course.objects.get(id=course_id)\n student = Student.objects.get(user=request.user)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n\n # Fetch question and error if not found.\n try:\n question = EssayQuestion.objects.get(\n assignment=assignment,\n question_id=question_id,\n )\n except MultipleChoiceQuestion.DoesNotExist:\n response_data = {'status' : 'failed', 'message' : 'cannot find question'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")\n\n try:\n submission = EssaySubmission.objects.get(\n student=student,\n question=question,\n )\n except EssaySubmission.DoesNotExist:\n submission = EssaySubmission.objects.create(\n student=student,\n question=question,\n )\n submission.file = file\n submission.save()\n response_data = {'status' : 'success', 'message' : 'submitted'}\n\n# form = EssaySubmissionForm(instance=submission, files=request.FILES)\n# if form.is_valid():\n# form.save() # Save the form contents to the model\n# response_data = {'status' : 'success', 'message' : 'submitted'}\n# else:\n# response_data = {'status' : 'failed', 'message' : json.dumps(form.errors)}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.submit_e_assignment_answer", "header": "['module', '___EOS___']", "index": 224 }, { "content": "@login_required()\ndef submit_mc_assignment_answer(request, course_id, assignment_id):\n if request.is_ajax():\n if request.method == 'POST':\n # Extract parameters from post\n question_id = int(request.POST['question_id'])\n answer = request.POST['answer']\n \n # Fetch from database\n course = Course.objects.get(id=course_id)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n student = Student.objects.get(user=request.user)\n \n # Fetch question and error if not found.\n try:\n question = MultipleChoiceQuestion.objects.get(\n assignment=assignment,\n question_id=question_id,\n )\n except MultipleChoiceQuestion.DoesNotExist:\n response_data = {'status' : 'failed', 'message' : 'cannot find question'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")\n\n # Fetch submission and create new submission if not found.\n try:\n submission = MultipleChoiceSubmission.objects.get(\n student=student,\n question=question,\n )\n except MultipleChoiceSubmission.DoesNotExist:\n submission = MultipleChoiceSubmission.objects.create(\n student=student,\n question=question,\n )\n\n # Save answer\n if answer == 'A':\n submission.a = not submission.a\n if answer == 'B':\n submission.b = not submission.b\n if answer == 'C':\n submission.c = not submission.c\n if answer == 'D':\n submission.d = not submission.d\n if answer == 'E':\n submission.e = not submission.e\n if answer == 'F':\n submission.f = not submission.f\n submission.save()\n \n # Caclulate score\n total = 6\n correct = 0\n if submission.a == submission.question.a_is_correct:\n correct += 1;\n if submission.b == submission.question.b_is_correct:\n correct += 1;\n if submission.c == submission.question.c_is_correct:\n correct += 1;\n if submission.d == submission.question.d_is_correct:\n correct += 1;\n if submission.e == submission.question.e_is_correct:\n correct += 1;\n if submission.f == submission.question.f_is_correct:\n correct += 1;\n\n # If all choices have been correctly selected, then give full credit.\n if total == correct:\n submission.marks = submission.question.marks\n else:\n submission.marks = 0\n submission.save()\n \n # Return success results\n response_data = {'status' : 'success', 'message' : 'submitted'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")\n\n response_data = {'status' : 'failed', 'message' : 'error submitting'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.submit_mc_assignment_answer", "header": "['module', '___EOS___']", "index": 275 }, { "content": "@login_required()\ndef submit_tf_assignment_answer(request, course_id, assignment_id):\n if request.is_ajax():\n if request.method == 'POST':\n # Extract parameters from post\n question_id = int(request.POST['question_id'])\n answer = request.POST['answer']\n \n # Fetch from database\n course = Course.objects.get(id=course_id)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n student = Student.objects.get(user=request.user)\n\n # Fetch question and error if not found.\n try:\n question = TrueFalseQuestion.objects.get(\n assignment=assignment,\n question_id=question_id,\n )\n except MultipleChoiceQuestion.DoesNotExist:\n response_data = {'status' : 'failed', 'message' : 'cannot find question'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")\n\n # Fetch submission and create new submission if not found.\n try:\n submission = TrueFalseSubmission.objects.get(\n student=student,\n question_id=question_id,\n )\n except TrueFalseSubmission.DoesNotExist:\n submission = TrueFalseSubmission.objects.create(\n student=student,\n question_id=question_id,\n )\n\n # Process the answer\n submission.answer = answer == \"true\"\n submission.save()\n \n # Calculate the marks\n if submission.answer == submission.question.answer:\n submission.marks = submission.question.marks\n else:\n submission.marks = 0\n submission.save()\n\n response_data = {'status' : 'success', 'message' : 'submitted'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.submit_tf_assignment_answer", "header": "['module', '___EOS___']", "index": 356 }, { "content": "@login_required()\ndef submit_r_assignment_answer(request, course_id, assignment_id):\n if request.is_ajax():\n if request.method == 'POST':\n # Extract parameters from post\n question_id = int(request.POST['question_id'])\n answer = request.POST['answer']\n \n # Fetch from database\n course = Course.objects.get(id=course_id)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n student = Student.objects.get(user=request.user)\n \n # Fetch question and error if not found.\n try:\n question = ResponseQuestion.objects.get(\n assignment=assignment,\n question_id=question_id,\n )\n except ResponseQuestion.DoesNotExist:\n response_data = {'status' : 'failed', 'message' : 'cannot find question'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")\n \n # Fetch submission and create new submission if not found.\n try:\n submission = ResponseSubmission.objects.get(\n student=student,\n question_id=question_id,\n )\n except ResponseSubmission.DoesNotExist:\n submission = ResponseSubmission.objects.create(\n student=student,\n question_id=question_id,\n )\n \n # Process the answer\n # Return success results\n submission.answer = answer\n submission.save()\n \n response_data = {'status' : 'success', 'message' : 'submitted'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.submit_r_assignment_answer", "header": "['module', '___EOS___']", "index": 406 }, { "content": "@login_required()\ndef submit_assignment(request, course_id, assignment_id):\n if request.is_ajax():\n if request.method == 'POST':\n # Fetch from database\n course = Course.objects.get(id=course_id)\n assignment = Assignment.objects.get(assignment_id=assignment_id)\n student = Student.objects.get(user=request.user)\n\n # Defensive Code: Prevent submitting assignment with missing questions\n #TODO: IMPL\n\n # Fetch submission and create new submission if not found.\n try:\n submission = AssignmentSubmission.objects.get(\n student=student,\n assignment=assignment,\n )\n except AssignmentSubmission.DoesNotExist:\n submission = AssignmentSubmission.objects.create(\n student=student,\n assignment=assignment,\n )\n submission.is_finished = True\n submission.save()\n \n # Compute the final score of the assignment\n compute_score(student, assignment, submission)\n \n response_data = {'status' : 'success', 'message' : 'submitted'}\n return HttpResponse(json.dumps(response_data), content_type=\"application/json\")", "metadata": "root.submit_assignment", "header": "['module', '___EOS___']", "index": 450 }, { "content": "def compute_score(student, assignment, submission):\n submission.total_marks = 0\n submission.earned_marks = 0\n\n # Essay Submission(s)\n e_submissions = EssaySubmission.objects.filter(\n student=student,\n question__assignment=assignment,\n )\n for e_submission in e_submissions:\n submission.total_marks += e_submission.question.marks\n submission.earned_marks += e_submission.marks\n\n # Multiple Choice Submission(s)\n mc_submissions = MultipleChoiceSubmission.objects.filter(\n student=student,\n question__assignment=assignment,\n )\n for mc_submission in mc_submissions:\n submission.total_marks += mc_submission.question.marks\n submission.earned_marks += mc_submission.marks\n\n # True / False Submission(s)\n tf_submissions = TrueFalseSubmission.objects.filter(\n student=student,\n question__assignment=assignment,\n )\n for tf_submission in tf_submissions:\n submission.total_marks += tf_submission.question.marks\n submission.earned_marks += tf_submission.marks\n\n # Response Submission(s)\n r_submissions = ResponseSubmission.objects.filter(\n student=student,\n question__assignment=assignment,\n )\n for r_submission in r_submissions:\n submission.total_marks += r_submission.question.marks\n submission.earned_marks += r_submission.marks\n\n # Compute Percent\n try:\n submission.percent = round((submission.earned_marks / submission.total_marks) * 100)\n except ZeroDivisionError:\n submission.percent = 0\n\n # Save calculation\n submission.save()", "metadata": "root.compute_score", "header": "['module', '___EOS___']", "index": 487 } ]

[ { "span": "from django.core import serializers", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 35 }, { "span": "from django.contrib.auth.models import User", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 43 }, { "span": "from django.contrib.auth import authenticate, login, logout", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 59 }, { "span": "import datetime", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 15 }, { "span": "from student.forms import EssaySubmissionForm", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 45 }, { "span": "from student.forms import AssignmentSubmissionForm", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 50 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def testIsPackageUploadNecessaryWhenHashMissing(self):\n \"\"\"Test _IsPackageUploadNecessary().\"\"\"\n filename = '/tmp/pkgname.dmg'\n upload_pkginfo = self.mox.CreateMockAnything()\n upload_pkginfo_dict = {\n 'installer_item_size': 1,\n 'installer_item_hash': 'foobar',\n }\n cur_pkginfo = 'xml pkginfo data'\n pkginfo_plist = self.mox.CreateMockAnything()\n mock_mpip = self.mox.CreateMockAnything()\n pkginfo_dict = {'foo': 'bar'}\n\n self.mox.StubOutWithMock(self.client, 'GetPackageInfo')\n self.stubs.Set(client, 'plist', self.mox.CreateMock(client.plist))\n\n self.client.GetPackageInfo(filename).AndReturn(cur_pkginfo)\n client.plist.MunkiPackageInfoPlist(cur_pkginfo).AndReturn(mock_mpip)\n mock_mpip.Parse().AndReturn(None)\n mock_mpip.GetContents().AndReturn(pkginfo_dict)\n\n client.plist.MunkiPackageInfoPlist(upload_pkginfo).AndReturn(mock_mpip)\n mock_mpip.Parse().AndReturn(None)\n mock_mpip.GetContents().AndReturn(upload_pkginfo_dict)\n\n self.mox.ReplayAll()\n self.assertTrue(\n self.client._IsPackageUploadNecessary(filename, upload_pkginfo))\n self.mox.VerifyAll()", "metadata": "root.SimianClient.testIsPackageUploadNecessaryWhenHashMissing", "header": "['class', 'SimianClient', '(', 'mox', '.', 'MoxTestBase', ')', ':', '___EOS___']", "index": 273 }, { "content": " def testIsPackageUploadNecessaryWhenHashDifferent(self):\n \"\"\"Test _IsPackageUploadNecessary().\"\"\"\n filename = '/tmp/pkgname.dmg'\n orig_sha256_hash = 'haha hash 2'\n upload_pkginfo = self.mox.CreateMockAnything()\n upload_pkginfo_dict = {\n 'installer_item_size': 1,\n 'installer_item_hash': 'not %s' % orig_sha256_hash,\n }\n cur_pkginfo = 'xml pkginfo data'\n pkginfo_plist = self.mox.CreateMockAnything()\n mock_mpip = self.mox.CreateMockAnything()\n pkginfo_dict = {'installer_item_hash': orig_sha256_hash}\n\n self.mox.StubOutWithMock(self.client, 'GetPackageInfo')\n self.stubs.Set(client, 'plist', self.mox.CreateMock(client.plist))\n\n self.client.GetPackageInfo(filename).AndReturn(cur_pkginfo)\n client.plist.MunkiPackageInfoPlist(cur_pkginfo).AndReturn(mock_mpip)\n mock_mpip.Parse().AndReturn(None)\n mock_mpip.GetContents().AndReturn(pkginfo_dict)\n\n client.plist.MunkiPackageInfoPlist(upload_pkginfo).AndReturn(mock_mpip)\n mock_mpip.Parse().AndReturn(None)\n mock_mpip.GetContents().AndReturn(upload_pkginfo_dict)\n\n self.mox.ReplayAll()\n self.assertTrue(\n self.client._IsPackageUploadNecessary(filename, upload_pkginfo))\n self.mox.VerifyAll()", "metadata": "root.SimianClient.testIsPackageUploadNecessaryWhenHashDifferent", "header": "['class', 'SimianClient', '(', 'mox', '.', 'MoxTestBase', ')', ':', '___EOS___']", "index": 303 }, { "content": " def testIsPackageUploadNecessaryWhenHashSame(self):\n \"\"\"Test _IsPackageUploadNecessary().\"\"\"\n filename = '/tmp/pkgname.dmg'\n orig_sha256_hash = 'haha hash 2'\n upload_pkginfo = self.mox.CreateMockAnything()\n upload_pkginfo_dict = {\n 'uninstaller_item_size': 1,\n 'uninstaller_item_hash': orig_sha256_hash,\n }\n cur_pkginfo = 'xml pkginfo data'\n pkginfo_plist = self.mox.CreateMockAnything()\n mock_mpip = self.mox.CreateMockAnything()\n pkginfo_dict = {'uninstaller_item_hash': orig_sha256_hash}\n\n self.mox.StubOutWithMock(self.client, 'GetPackageInfo')\n self.stubs.Set(client, 'plist', self.mox.CreateMock(client.plist))\n\n self.client.GetPackageInfo(filename).AndReturn(cur_pkginfo)\n client.plist.MunkiPackageInfoPlist(cur_pkginfo).AndReturn(mock_mpip)\n mock_mpip.Parse().AndReturn(None)\n mock_mpip.GetContents().AndReturn(pkginfo_dict)\n\n client.plist.MunkiPackageInfoPlist(upload_pkginfo).AndReturn(mock_mpip)\n mock_mpip.Parse().AndReturn(None)\n mock_mpip.GetContents().AndReturn(upload_pkginfo_dict)\n\n self.mox.ReplayAll()\n self.assertFalse(\n self.client._IsPackageUploadNecessary(filename, upload_pkginfo))\n self.mox.VerifyAll()", "metadata": "root.SimianClient.testIsPackageUploadNecessaryWhenHashSame", "header": "['class', 'SimianClient', '(', 'mox', '.', 'MoxTestBase', ')', ':', '___EOS___']", "index": 334 }, { "content": " def testUploadMunkiPackageWhenNotReadOnlyDiskImage(self):\n \"\"\"Test UploadMunkiPackage().\"\"\"\n filename = '/tmp/filename'\n description = 'desc'\n display_name = 'dn'\n catalogs = 'catalogs'\n manifests = 'manifests'\n install_types = 'install_types'\n pkginfo = self.mox.CreateMockAnything()\n pkginfo_hooks = None\n pkginfo_dict = {\n 'installer_item_size': 'size',\n 'installer_item_hash': 'hash',\n }\n response = 'http response'\n\n self.mox.StubOutWithMock(self.client, '_IsDiskImageReadOnly')\n self.mox.StubOutWithMock(self.client, '_LoadPackageInfo')\n self.mox.StubOutWithMock(self.client, 'UploadPackage')\n\n self.client._IsDiskImageReadOnly(filename).AndReturn(False)\n\n self.mox.ReplayAll()\n self.assertRaises(\n client.client.SimianClientError,\n self.client.UploadMunkiPackage,\n filename, description, display_name, catalogs, manifests,\n install_types, pkginfo_hooks=pkginfo_hooks)\n self.mox.VerifyAll()", "metadata": "root.SimianClient.testUploadMunkiPackageWhenNotReadOnlyDiskImage", "header": "['class', 'SimianClient', '(', 'mox', '.', 'MoxTestBase', ')', ':', '___EOS___']", "index": 365 }, { "content": " def testUploadMunkiPackageWhenHookFalse(self):\n \"\"\"Test UploadMunkiPackage().\"\"\"\n filename = '/tmp/filename'\n description = 'desc'\n display_name = 'dn'\n catalogs = 'catalogs'\n manifests = 'manifests'\n install_types = 'install_types'\n pkginfo = self.mox.CreateMockAnything()\n pkginfo_hooks = [self.mox.CreateMockAnything()]\n pkginfo_dict = {\n 'installer_item_size': 'size',\n 'installer_item_hash': 'hash',\n }\n response = 'http response'\n\n self.mox.StubOutWithMock(self.client, '_IsDiskImageReadOnly')\n self.mox.StubOutWithMock(self.client, '_LoadPackageInfo')\n self.mox.StubOutWithMock(self.client, 'UploadPackage')\n\n self.client._IsDiskImageReadOnly(filename).AndReturn(True)\n self.client._LoadPackageInfo(\n filename, description, display_name, catalogs).AndReturn(pkginfo)\n pkginfo_hooks[0](pkginfo).AndReturn(False)\n pkginfo.Validate().AndReturn(None)\n\n self.mox.ReplayAll()\n self.assertRaises(\n client.client.SimianClientError,\n self.client.UploadMunkiPackage,\n filename, description, display_name, catalogs, manifests, install_types,\n pkginfo_hooks=pkginfo_hooks)\n self.mox.VerifyAll()", "metadata": "root.SimianClient.testUploadMunkiPackageWhenHookFalse", "header": "['class', 'SimianClient', '(', 'mox', '.', 'MoxTestBase', ')', ':', '___EOS___']", "index": 533 } ]

[ { "span": "pkginfo_plist ", "start_line": 282, "start_column": 4, "end_line": 282, "end_column": 17 }, { "span": "pkginfo_plist ", "start_line": 313, "start_column": 4, "end_line": 313, "end_column": 17 }, { "span": "pkginfo_plist ", "start_line": 344, "start_column": 4, "end_line": 344, "end_column": 17 }, { "span": "pkginfo ", "start_line": 373, "start_column": 4, "end_line": 373, "end_column": 11 }, { "span": "pkginfo_dict ", "start_line": 375, "start_column": 4, "end_line": 375, "end_column": 16 }, { "span": "response ", "start_line": 379, "start_column": 4, "end_line": 379, "end_column": 12 }, { "span": "pkginfo_dict ", "start_line": 543, "start_column": 4, "end_line": 543, "end_column": 16 }, { "span": "response ", "start_line": 547, "start_column": 4, "end_line": 547, "end_column": 12 } ]

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[ { "content": "from copy import deepcopy, copy\nimport logging\nfrom treedict import TreeDict\nimport re\nfrom axisproxy import AxisProxy\n \n\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class PModule:\n \"\"\"\n The base class for a processing module.\n \"\"\"\n\n\n\n\n \n\n\n\n\n \n\n\n \n ############################################################\n # Now the initializing and running functions\n\n # The setup function; in case it's not needed\n\n \n\n ############################################################\n # Hash stuff\n\n\n\n \n \n\n \n\n", "metadata": "root.PModule", "header": "['module', '___EOS___']", "index": 6 }, { "content": " @classmethod\n def name(cls):\n \"\"\"\n A convenience function; returns the name of the class.\n \"\"\"\n \n return cls._name", "metadata": "root.PModule.name", "header": "['class', 'PModule', ':', '___EOS___']", "index": 11 }, { "content": " @classmethod\n def preprocessParameters(cls, local_parameters):\n \"\"\"\n Optionally, return a preprocessd version of the parameters with\n unneeded options removed. This allows for a hash to be\n calculated that just works with relevant parameters.\n\n meant to be overwritten.\n \"\"\"\n return local_parameters", "metadata": "root.PModule.preprocessParameters", "header": "['class', 'PModule', ':', '___EOS___']", "index": 19 }, { "content": " @classmethod\n def _preprocessParameters(cls, parameters):\n\n pb = parameters[cls._name]\n\n for t in [[], [pb], [pb,parameters.copy(freeze=True)]]:\n try:\n p = cls.preprocessParameters(*t)\n break\n except TypeError, te:\n\n if \"preprocessParameters\" in str(te):\n continue\n else:\n raise\n\n return p if p is not None else parameters[cls._name]", "metadata": "root.PModule._preprocessParameters", "header": "['class', 'PModule', ':', '___EOS___']", "index": 30 }, { "content": " @classmethod\n def _getDependencies(cls, parameters):\n \n def getDep(dep_type):\n\n # Get the precise dependencies \n dep_attr = dep_type + '_dependencies'\n\n def process_dependency(dl):\n def wrong_type(s):\n raise TypeError(\"'%s' dependency type '%s' for module '%s' not understood\"\n % (dep_type, str(type(s)), cls._name))\n \n def clean(s):\n if type(s) is str:\n return s.strip().lower()\n elif not getattr(s, \"__parameter_container__\", False):\n wrong_type(s)\n return s\n \n if type(dl) is str or getattr(dl, \"__parameter_container__\", False):\n s = [dl]\n elif type(dl) in [list, tuple, set]:\n s = list(dl)\n elif dl is None:\n s = []\n else:\n wrong_type(dl)\n \n s = [clean(se) for se in s]\n\n return [se for se in s if se != \"\"]\n\n if hasattr(cls, dep_attr):\n dependency_function = getattr(cls, dep_attr)\n\n if type(dependency_function) in [list, tuple, set, str]:\n return process_dependency(dependency_function)\n\n null_ = \"_null_\"\n\n deps = null_\n \n pb = parameters[cls._name]\n \n for t in [[], [pb], [pb,parameters]]:\n try:\n deps = dependency_function(*t)\n break\n except TypeError, te:\n\n if dep_attr in str(te):\n continue\n else:\n raise\n\n if deps is null_:\n raise TypeError((\"%s() for %s must be a string, list, tuple, set or \"\n \"take either no parameters, the local parameter \"\n \"tree, or the local and global parameter trees.\")\n % (dep_attr, cls._name))\n\n \n return process_dependency(deps) \n\n else:\n return []\n\n mod_dep = getDep(\"module\")\n res_dep = getDep(\"result\")\n par_dep = getDep(\"parameter\")\n\n return (mod_dep, res_dep, par_dep)", "metadata": "root.PModule._getDependencies", "header": "['class', 'PModule', ':', '___EOS___']", "index": 48 }, { "content": " @classmethod\n def _getVersion(cls):\n \"\"\"\n Returns a number indicating the version of the pmodule for\n caching purposes.\n \"\"\"\n \n if hasattr(cls, \"version\"):\n return cls.version\n else:\n return None", "metadata": "root.PModule._getVersion", "header": "['class', 'PModule', ':', '___EOS___']", "index": 123 }, { "content": " @classmethod\n def _getLogger(cls):\n \"\"\"\n Returns the logger associated with the given manager. Note\n that this is available to subclasses as `self.log` or class\n methods as `cls.log` (the log attribute is given to the module\n by the pmodule decorator)\n \"\"\"\n \n return logging.getLogger(cls._name)", "metadata": "root.PModule._getLogger", "header": "['class', 'PModule', ':', '___EOS___']", "index": 135 }, { "content": " @classmethod\n def __getBinaryAttr(self, attr, parameters):\n \n x = getattr(self, attr)\n\n if x in [True, False]:\n return x\n else:\n pb = parameters[self._name]\n\n for t in [[], [pb], [pb, parameters]]:\n try:\n ret = x(*t)\n break\n except TypeError, te:\n\n if attr in str(te):\n continue\n else:\n raise\n\n if ret not in [True, False]:\n raise TypeError(\"'%s' must evaluate to or \"\n \"return True or False.\" % attr)\n return ret ", "metadata": "root.PModule.__getBinaryAttr", "header": "['class', 'PModule', ':', '___EOS___']", "index": 146 }, { "content": " @classmethod\n def _allowsResultCaching(self, parameters):\n if not self._allowsCaching(parameters):\n return False\n\n if hasattr(self, \"disable_results_caching\"):\n return not self.__getBinaryAttr(\"disable_results_caching\", parameters)\n elif hasattr(self, \"disable_result_caching\"):\n return not self.__getBinaryAttr(\"disable_result_caching\", parameters)\n else:\n return True", "metadata": "root.PModule._allowsResultCaching", "header": "['class', 'PModule', ':', '___EOS___']", "index": 172 }, { "content": " @classmethod\n def _allowsCaching(self, parameters):\n if hasattr(self, \"disable_caching\"):\n return not self.__getBinaryAttr(\"disable_caching\", parameters)\n else:\n return True", "metadata": "root.PModule._allowsCaching", "header": "['class', 'PModule', ':', '___EOS___']", "index": 184 }, { "content": " def _setResults(self, r):\n self.local_results = r", "metadata": "root.PModule._setResults", "header": "['class', 'PModule', ':', '___EOS___']", "index": 191 }, { "content": " def _destroy(self):\n\n # makes the the GC easier\n\n del self.local_results\n del self.modules\n del self.results\n del self.parameters\n del self.p\n self.__container_map.clear()\n\n self.log.debug(\"Module %s destroyed.\" % self._name)\n\n self._pnode = None", "metadata": "root.PModule._destroy", "header": "['class', 'PModule', ':', '___EOS___']", "index": 194 }, { "content": " def __init__(self, pnode, parameters, results, modules):\n\n name = self._name\n \n self._pnode = pnode\n\n self.log.info('Initializing Module %s.' % self._name)\n\n self.parameters = parameters\n self.p = parameters[self._name]\n self.results = results\n self.modules = modules\n\n self.__container_map = {}\n\n # Now, call the per-class setup method\n self.setup()\n\n self.log.debug(\"Module %s set up.\" % self._name)", "metadata": "root.PModule.__init__", "header": "['class', 'PModule', ':', '___EOS___']", "index": 211 }, { "content": " def setup(self):\n \"\"\"\n `setup()` is called whenever the processing module is\n initialized, regardless of whether the results are requested\n or not. It is the proper place to put all code that sets up\n the module and is needed to be accessed from other modules\n\n Any return value is discarded.\n\n Note that :ref:`run` is called only if matching results are\n not in the cache.\n \"\"\"\n \n pass", "metadata": "root.PModule.setup", "header": "['class', 'PModule', ':', '___EOS___']", "index": 232 }, { "content": " @classmethod\n def reportResults(cls, parameters, p, r):\n \"\"\"\n Called after results are either loaded from cache or produced\n by :ref:`run` to allow for reporting information about the\n results to the log. Since this method is a class method, it\n cannot depend on :ref:`setup` or :ref:`run`.\n\n `parameters` is the full parameter tree, `p` is the branch of\n the parameter tree specific to this module, and `r` is the\n result tree produced by a previous call to `run` or loaded\n from cache.\n\n Note that results should normally be reported using the class\n attribute `cls.log`.\n \"\"\"\n \n\tcls.log.debug(\"Null Result Reporting function for %s.\" % cls._name)\n \n pass", "metadata": "root.PModule.reportResults", "header": "['class', 'PModule', ':', '___EOS___']", "index": 247 }, { "content": " def run(self):\n \"\"\"\n The primary method to produce results. It may return either\n None (no results produced) or a TreeDict instance with the\n results stored in it. This TreeDict instance is saved to the\n cache if caching is enabled.\n\n If the class attribute `disable_results_caching` is set to\n True, or the return result is None, then the results are never\n saved to cache and this method is always called when results\n from the module are requested. Otherwise, they are loaded\n from cache if possible.\n \"\"\"\n \n pass", "metadata": "root.PModule.run", "header": "['class', 'PModule', ':', '___EOS___']", "index": 268 }, { "content": " def itemHash(self, *items):\n\t\"\"\"\n\tReturns a hash of arbitrary items. This is intended to be\n\tused for fine-grained control of dependencies on parameters;\n\tthe resulting value can passed to :ref:`inCache`,\n\t:ref:`loadFromCache`, and :ref:`saveToCache`. For example::\n\n key = self.itemHash(self.p.x1, self.p.x2)\n\n if self.inCache(key):\n return self.loadFromCache(key)\n else:\n # process, create obj\n\n self.saveToCache(key, obj)\n\n Note that most of this functionality is provided by specifying\n `items` as a tuple to the key argument of :ref:inCache,\n :ref:loadFromCache, or :ref:saveToCache.\n \n\t\"\"\"\n\n\tt = TreeDict()\n\n\tfor n, it in enumerate(items):\n\t t[\"b%d\" % n] = it\n\n\treturn t.hash()", "metadata": "root.PModule.itemHash", "header": "['class', 'PModule', ':', '___EOS___']", "index": 287 }, { "content": " def _cacheAction(self, action,\n obj_name, key,\n ignore_module,\n ignore_local,\n ignore_dependencies,\n is_disk_writable,\n is_persistent,\n creation_function = None,\n obj = None):\n\n if key is not None:\n key = TreeDict(key = key).hash()\n\n d_key = (obj_name, key, ignore_module, ignore_local,\n ignore_dependencies, is_persistent)\n\n try:\n container = self.__container_map[d_key]\n except KeyError:\n container = self.__container_map[d_key] = self._pnode.getCacheContainer(\n obj_name, key, ignore_module, ignore_local,\n ignore_dependencies, is_disk_writable, is_persistent)\n\n if not is_disk_writable:\n container.disableDiskWriting()\n\n if action == \"query\":\n return container.objectIsLoaded()\n elif action == \"load\":\n if not container.objectIsLoaded():\n if creation_function is None:\n raise RuntimeError(\n \"creation_function must be supplied if the \"\n \"object is not available in the cache.\")\n \n container.setObject(creation_function())\n \n return container.getObject()\n \n elif action == \"save\":\n container.setObject(obj)\n\n elif action == \"key\":\n return container.getKeyAsString()\n \n else:\n assert False", "metadata": "root.PModule._cacheAction", "header": "['class', 'PModule', ':', '___EOS___']", "index": 316 }, { "content": " def inCache(self, obj_name, key = None,\n ignore_module = False,\n ignore_local = False,\n disk_writable = True,\n ignore_dependencies = False):\n \"\"\"\n Returns True if an object with key `obj_name` can be loaded\n from cache and False otherwise.\n\n If `key` is not None, a hash is taken of all the values in\n `key` and appended to `obj_name` to specify the name of the\n object. This is an easy and robust way of specifying\n dependencies on parameters. It can be almost any python\n object (the TreeDict hash() function is used to generate the\n hash).\n \n If `ignore_module` is True, then the specific module is\n ignored when caching the object. This can be used for sharing\n objects between modules (when the existing dependency system\n is inadequate).\n\n If `ignore_local` is True, then the local branch of the\n central parameter tree is ignored in calculating the\n dependencies. This allows for fine-grained control over which\n local parameters the object depends on. For example, perhaps\n an object only depends on the local parameters `x` and `y` and\n results from another module. The proper way to query such an\n object would be::\n\n self.inCache(\\\"myobj\\\", ignore_local = True, key = (self.p.x, self.p.y))\n\n If `ignore_dependencies` is True, then the parameters (and\n PModule versions) of all specified dependencies are ignored\n when generating the key for the queried object. For example,\n if an object only depends on the values of the local parameter\n branch and is independent of the results of dependent modules,\n then it can be stored and loaded from cache more frequently by\n specifying ``ignore_dependencies=True``).\n \n \"\"\"\n\n return self._cacheAction(\"query\", obj_name, key, ignore_module,\n ignore_local, ignore_dependencies, True, True)", "metadata": "root.PModule.inCache", "header": "['class', 'PModule', ':', '___EOS___']", "index": 364 }, { "content": " def loadFromCache(self, obj_name, key = None,\n ignore_module = False,\n ignore_local = False,\n ignore_dependencies = False,\n disk_writable = True,\n persistent = True,\n creation_function = None):\n \"\"\"\n Loads the specific object from the cache if available. If it\n is not available, a RuntimeError is raised.\n\n If `key` is not None, a hash is taken of all the values in\n `key` and appended to `obj_name` to specify the name of the\n object. This is an easy and robust way of specifying\n dependencies on parameters. It can be almost any python\n object (the TreeDict hash() function is used to generate the\n hash).\n\n If `ignore_module` is True, then the specific module is\n ignored when caching the object. This can be used for sharing\n objects between modules (when the existing dependency system\n is inadequate).\n\n If `ignore_local` is True, then the local branch of the\n central parameter tree is ignored in calculating the\n dependencies. This allows for fine-grained control over which\n local parameters the object depends on. For example, perhaps\n an object only depends on the local parameters `x` and `y` and\n results from another module. The proper way to load such an\n object would be::\n\n self.loadFromCache(\\\"myobj\\\", ignore_local = True,\n key = (self.p.x, self.p.y))\n\n If `ignore_dependencies` is True, then the parameters (and\n PModule versions) of all specified dependencies are ignored\n when generating the key for the requested object. For\n example, if an object only depends on the values of the local\n parameter branch and is independent of the results of\n dependent modules, then it can be stored and loaded from cache\n more frequently by specifying ``ignore_dependencies=True``).\n If `persistent` is False, then only one objects with the\n given name ever held in the in-memory cache at a single time.\n If `ignore_module` is True, this holds across modules,\n otherwise, it holds only within this module.\n\n If `disk_writable` is False, then only the internal memory\n cache is used; the object is never written to disk.\n\n If `creation_function` is not None, and the object is not in\n cache, ``creation_function()`` is called to create an instance\n of the object, which is then stored in cache and returned.\n For example, in the following code, the function ``create()``\n is called only if `listobj` is not in the cache::\n\n def run(self):\n\n # ...\n\n def create_listobj():\n return [None]*self.p.list_length\n\n L = self.loadFromCache(\\\"listobj\\\", creation_function = create_listobj)\n \n \"\"\"\n\n return self._cacheAction(\"load\", obj_name, key, ignore_module,\n ignore_local, ignore_dependencies, disk_writable,\n persistent, creation_function = creation_function)", "metadata": "root.PModule.loadFromCache", "header": "['class', 'PModule', ':', '___EOS___']", "index": 408 }, { "content": " def saveToCache(self, obj_name, obj,\n key = None,\n ignore_module = False,\n ignore_local = False,\n ignore_dependencies = False,\n persistent = True,\n disk_writable = True):\n \"\"\"\n Caches the specific object `obj` in the local cache.\n\n If `key` is not None, a hash is taken of all the values in\n `key` and appended to `obj_name` to specify the name of the\n object. This is an easy and robust way of specifying\n dependencies on parameters. It can be almost any python\n object (the TreeDict hash() function is used to generate the\n hash).\n\n If `ignore_module` is True, then the specific module is\n ignored when caching the object. This can be used for sharing\n objects between modules (when the existing dependency system\n is inadequate).\n\n If `ignore_local` is True, then the local branch of the\n central parameter tree is ignored in calculating the\n dependencies. This allows for fine-grained control over which\n local parameters the object depends on. For example, perhaps\n an object only depends on the local parameters `x` and `y` and\n results from another module. The proper way to save such an\n object to the cache would be::\n\n self.saveToCache(\\\"myobj\\\", ignore_local = True,\n key = (self.p.x, self.p.y))\n\n If `ignore_dependencies` is True, then the parameters (and\n PModule versions) of all specified dependencies are ignored\n when generating the key for the requested object. For\n example, if an object only depends on the values of the local\n parameter branch and is independent of the results of\n dependent modules, then it can be saved and loaded from cache\n more frequently by specifying ``ignore_dependencies=True``).\n\n If `persistent` is False, then only one objects with the\n given name ever held in the in-memory cache at a single time.\n If `ignore_module` is True, this holds across modules,\n otherwise, it holds only within this module.\n\n If `disk_writable` is False, then only the internal memory\n cache is used; the object is never written to disk.\n \"\"\"\n\n return self._cacheAction(\n \"save\", obj_name, key, ignore_module, ignore_local,\n ignore_dependencies, disk_writable, persistent, obj=obj)", "metadata": "root.PModule.saveToCache", "header": "['class', 'PModule', ':', '___EOS___']", "index": 478 }, { "content": " def key(self, obj_name = None,\n key = None,\n ignore_module = False,\n ignore_local = False,\n ignore_dependencies = False):\n \"\"\"\n Returns a unique string representing the state of the current\n processing module or a certain object. This string is a\n deterministic hash of the parameters, possibly including\n dependencies, for the processing module. \n\n \"\"\"\n\n return self._cacheAction(\"key\", \"__null__\" if obj_name is None else obj_name,\n key, ignore_module, ignore_local,\n ignore_dependencies, True, True)", "metadata": "root.PModule.key", "header": "['class', 'PModule', ':', '___EOS___']", "index": 532 }, { "content": " def getParameters(self, n):\n \"\"\"\n Returns the parameter tree specified\n \"\"\"\n\n return self._pnode.getSpecific(\"parameters\", n)", "metadata": "root.PModule.getParameters", "header": "['class', 'PModule', ':', '___EOS___']", "index": 549 }, { "content": " def getResults(self, r):\n \"\"\"\n Returns the results from r \n \"\"\"\n\n return self._pnode.getSpecific(\"results\", r)", "metadata": "root.PModule.getResults", "header": "['class', 'PModule', ':', '___EOS___']", "index": 556 }, { "content": " def getModule(self, m):\n \"\"\"\n\n \"\"\"\n\n return self._pnode.getSpecific(\"module\", m)", "metadata": "root.PModule.getModule", "header": "['class', 'PModule', ':', '___EOS___']", "index": 563 } ]

[ { "span": "from copy import deepcopy, copy", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 31 }, { "span": "import re", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 9 }, { "span": "from axisproxy import AxisProxy", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 31 } ]

[]

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[ { "content": "from video import db\nfrom video.models import SupportTicket\ndb.create_all()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from video.models import SupportTicket", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 38 } ]

[]

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[ { "content": "def handle_upload(request):\n if not request.method == \"POST\":\n raise UploadException(\"AJAX request not valid: must be POST\")\n if request.is_ajax():\n # the file is stored raw in the request\n is_raw = True\n filename = request.GET.get('qqfile', False) or request.GET.get('filename', False) or ''\n\n try:\n content_length = int(request.META['CONTENT_LENGTH'])\n except (IndexError, TypeError, ValueError):\n content_length = None\n\n if content_length < 0:\n # This means we shouldn't continue...raise an error.\n raise UploadException(\"Invalid content length: %r\" % content_length)\n\n upload_handlers = request.upload_handlers\n for handler in upload_handlers:\n handler.handle_raw_input(request,\n request.META,\n content_length,\n None,\n None)\n pass\n\n # For compatibility with low-level network APIs (with 32-bit integers),\n # the chunk size should be < 2^31, but still divisible by 4.\n possible_sizes = [x.chunk_size for x in upload_handlers if x.chunk_size]\n chunk_size = min([2 ** 31 - 4] + possible_sizes)\n\n stream = ChunkIter(request, chunk_size)\n counters = [0] * len(upload_handlers)\n\n try:\n for handler in upload_handlers:\n try:\n handler.new_file(None, filename,\n None, content_length, None)\n except StopFutureHandlers:\n break\n\n for chunk in stream:\n for i, handler in enumerate(upload_handlers):\n chunk_length = len(chunk)\n chunk = handler.receive_data_chunk(chunk,\n counters[i])\n counters[i] += chunk_length\n if chunk is None:\n # If the chunk received by the handler is None, then don't continue.\n break\n\n except SkipFile:\n # Just use up the rest of this file...\n exhaust(stream)\n except StopUpload as e:\n if not e.connection_reset:\n exhaust(request)\n else:\n # Make sure that the request data is all fed\n exhaust(request)\n\n # Signal that the upload has completed.\n for handler in upload_handlers:\n retval = handler.upload_complete()\n if retval:\n break\n\n for i, handler in enumerate(upload_handlers):\n file_obj = handler.file_complete(counters[i])\n if file_obj:\n upload = file_obj\n break\n else:\n if len(request.FILES) == 1:\n upload, filename, is_raw = handle_request_files_upload(request)\n else:\n raise UploadException(\"AJAX request not valid: Bad Upload\")\n return upload, filename, is_raw", "metadata": "root.handle_upload", "header": "['module', '___EOS___']", "index": 23 } ]

[ { "span": "pass", "start_line": 47, "start_column": 12, "end_line": 47, "end_column": 16 } ]

[]

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[ { "content": " def phaseN(self, environ, query, server_env, session):\n \"\"\"Step 2: Once the consumer has redirected the user back to the\n callback URL you can request the access token the user has\n approved.\"\"\"\n\n client = session['client']\n logger.debug(\"info: %s\", query)\n logger.debug(\"keyjar: %s\", client.keyjar)\n\n authresp = client.parse_response(AuthorizationResponse, query,\n sformat=\"dict\", keyjar=client.keyjar)\n\n if isinstance(authresp, ErrorResponse):\n return False, \"Access denied\"\n try:\n client.id_token = authresp[\"id_token\"]\n except:\n pass\n # session.session_id = msg[\"state\"]\n\n logger.debug(\"callback environ: %s\", environ)\n\n if self.flow_type == \"code\":\n # get the access token\n try:\n tokenresp = self.get_accesstoken(client, authresp)\n except Exception as err:\n logger.error(\"%s\", err)\n raise\n\n if isinstance(tokenresp, ErrorResponse):\n return (False, \"Invalid response %s.\" % tokenresp[\"error\"])\n\n access_token = tokenresp[\"access_token\"]\n else:\n access_token = authresp[\"access_token\"]\n\n userinfo = self.verify_token(client, access_token)\n\n inforesp = self.get_userinfo(client, authresp, access_token)\n\n if isinstance(inforesp, ErrorResponse):\n return False, \"Invalid response %s.\" % inforesp[\"error\"], session\n\n tot_info = userinfo.update(inforesp.to_dict())\n\n logger.debug(\"UserInfo: %s\", inforesp)\n\n return True, userinfo, access_token, client", "metadata": "root.OpenIDConnect.phaseN", "header": "['class', 'OpenIDConnect', '(', 'object', ')', ':', '___EOS___']", "index": 257 } ]

[ { "span": "tot_info ", "start_line": 301, "start_column": 8, "end_line": 301, "end_column": 16 } ]

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[ { "content": " def test_advanced1_inc_and_set(self):\n \"\"\"\n Test advanced increment and set.\n \"\"\"\n rng = numpy.random.RandomState(seed=utt.fetch_seed())\n all_inputs_var = []\n all_inputs_num = []\n all_outputs_var = []\n all_outputs_num = []\n for set_instead_of_inc in (False, True):\n for inplace in (False, True):\n for data_shape in ((10,), (4, 5), (1, 2, 3), (4, 5, 6, 7)):\n data_n_dims = len(data_shape)\n data_size = numpy.product(data_shape)\n # Corresponding numeric variable.\n data_num_init = numpy.arange(data_size, dtype=self.dtype)\n data_num_init = data_num_init.reshape(data_shape)\n inc_shapes = [data_shape[i:]\n for i in xrange(0, len(data_shape) + 1)]\n # Test broadcasting of y.\n inc_shapes += [(1,) + inc_shapes[-1][1:]]\n for inc_shape in inc_shapes:\n inc_n_dims = len(inc_shape)\n # We copy the numeric value to be 100% sure there is no\n # risk of accidentally sharing it.\n data_num = data_num_init.copy()\n # Symbolic variable to be incremented.\n # We create a new one every time in order not to\n # have duplicated variables in the function's inputs\n data_var = self.type(\n broadcastable=[False] * data_n_dims,\n dtype=self.dtype)()\n # Symbolic variable with rows to be incremented.\n idx_var = theano.tensor.vector(dtype='int64')\n n_to_inc = rng.randint(data_shape[0])\n if (n_to_inc == 1 and\n len(inc_shape) > 0 and\n inc_shape[0] == 1 and\n data_shape[0] > 1):\n n_to_inc = 2\n # Corresponding numeric variable.\n idx_num = rng.randint(0, data_shape[0], n_to_inc)\n idx_num = idx_num.astype('int64')\n # Symbolic variable with increment value.\n inc_var = self.type(\n broadcastable=[False] * inc_n_dims,\n dtype=self.dtype)()\n # Trick for the case where `inc_shape` is the same as\n # `data_shape`: what we actually want is the first\n # shape element to be equal to the number of rows to\n # increment.\n if len(inc_shape) == len(data_shape) and (\n len(inc_shapes) == 0 or inc_shape[0] != 1):\n inc_shape = (n_to_inc,) + inc_shape[1:]\n # The param dtype is needed when inc_shape is empty.\n # By default, it would return a float and rng.uniform\n # with NumPy 1.10 will raise a Deprecation warning.\n inc_size = numpy.product(inc_shape, dtype='int')\n # Corresponding numeric variable.\n inc_num = rng.uniform(size=inc_size).astype(self.dtype)\n inc_num = inc_num.reshape(inc_shape)\n # Result of the incrementation.\n # (i) Theano\n if set_instead_of_inc:\n op = set_subtensor\n else:\n op = inc_subtensor\n output = op(data_var[idx_var], inc_var,\n inplace=inplace)\n # (ii) Numpy (note that Numpy increments only once\n # duplicated indices, so we cannot directly use +=).\n data_copy = data_num.copy()\n for j, idx in enumerate(idx_num):\n if len(inc_shape) == len(data_shape):\n if inc_shape[0] == 1:\n # Allow broadcasting of y[0]\n inc_num0 = inc_num[0]\n if set_instead_of_inc:\n data_copy[idx] = inc_num0\n else:\n data_copy[idx] += inc_num0\n else:\n # Special case where there is no broadcasting.\n if set_instead_of_inc:\n data_copy[idx] = inc_num[j]\n else:\n data_copy[idx] += inc_num[j]\n else:\n if set_instead_of_inc:\n data_copy[idx] = inc_num\n else:\n data_copy[idx] += inc_num\n data_var = theano.In(data_var, mutable=True)\n\n # Remember data for the Theano function (see below).\n all_inputs_var += [data_var, idx_var, inc_var]\n all_inputs_num += [data_num, idx_num, inc_num]\n all_outputs_var.append(output)\n all_outputs_num.append(data_copy)\n if False: # Enable for debugging purpose.\n f = self.function([data_var, idx_var, inc_var],\n output, accept_inplace=inplace,\n op=self.adv_incsub1)\n if inplace:\n # Ensure calling `f` will not alter `data_num`.\n data_num = data_num.copy()\n f_out = f(data_num.copy(), idx_num, inc_num)\n assert numpy.allclose(f_out, data_copy)\n if not inplace:\n # Sanity check: `data_num` should be intact.\n assert (data_num == data_num_init).all()\n\n # Actual test (we compile a single Theano function to make it faster).\n orig_warn = theano.config.warn.gpu_set_subtensor1\n try:\n theano.config.warn.gpu_set_subtensor1 = False\n f = self.function(all_inputs_var, all_outputs_var,\n accept_inplace=True,\n op=self.adv_incsub1,\n N=len(all_outputs_var))\n finally:\n theano.config.warn.gpu_set_subtensor1 = orig_warn\n\n f_outs = f(*all_inputs_num)\n assert len(f_outs) == len(all_outputs_num)\n for f_out, output_num in izip(f_outs, all_outputs_num):\n # NB: if this assert fails, it will probably be easier to debug if\n # you enable the debug code above.\n assert numpy.allclose(f_out, output_num)", "metadata": "root.T_subtensor.test_advanced1_inc_and_set", "header": "['class', 'T_subtensor', '(', 'unittest', '.', 'TestCase', ',', 'utt', '.', 'TestOptimizationMixin', ')', ':', '___EOS___']", "index": 921 } ]

[ { "span": "f = self.function([data_var, idx_var, inc_var],\n output, accept_inplace=inplace,\n op=self.adv_incsub1)", "start_line": 1021, "start_column": 28, "end_line": 1023, "end_column": 66 } ]

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[ { "content": "# encoding: utf8\n\nfrom socket import ntohs\nfrom ctypes import (c_uint, c_void_p, c_uint32, c_char_p, ARRAY, c_uint64, c_int32, c_uint16, c_int,\n c_uint8, c_ulong, c_char, c_ubyte, Structure, c_size_t, c_ssize_t)\nfrom enum import Defaults\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def format_structure(instance):\n \"\"\"\n Returns a string representation for the structure\n \"\"\"\n if hasattr(instance, \"_fields_\"):\n out = []\n for field in instance._fields_:\n out.append(\"[%s: %s]\" % (field[0], getattr(instance, field[0], None)))\n return \"\".join(out)\n else:\n raise ValueError(\"Passed argument is not a structure!\")", "metadata": "root.format_structure", "header": "['module', '___EOS___']", "index": 8 }, { "content": "class PacketHeader(Structure):\n \"\"\"\n typedef struct {\n struct ip *ip_hdr;\n struct tcphdr *tcp_hdr;\n struct udphdr *udp_hdr;\n u_char *payload;\n size_t size_ip;\n size_t size_tcp;\n size_t size_udp;\n size_t size_payload;\n } packet_hdrs_t;\n \"\"\"\n _fields_ = [\n (\"ip_hdr\", c_void_p),\n (\"tcp_hdr\", c_void_p),\n (\"udp_hdr\", c_void_p),\n (\"payload\", c_char_p),\n (\"size_ip\", c_ulong),\n (\"size_tcp\", c_ulong),\n (\"size_udp\", c_ulong),\n (\"size_payload\", c_ulong),\n ]", "metadata": "root.PacketHeader", "header": "['module', '___EOS___']", "index": 21 }, { "content": "class IpHeader(Structure):\n \"\"\"\n Ctypes structure for IPv4 header definition.\n struct ip {\n u_char\tip_vhl;\t\t\t/* version << 4 | header length >> 2 */\n u_char\tip_tos;\t\t\t/* type of service */\n u_short\tip_len;\t\t\t/* total length */\n u_short\tip_id;\t\t\t/* identification */\n u_short\tip_off;\t\t\t/* fragment offset field */\n u_char\tip_ttl;\t\t\t/* time to live */\n u_char\tip_p;\t\t\t/* protocol */\n u_short\tip_sum;\t\t\t/* checksum */\n struct\tin_addr ip_src,ip_dst;\t/* source and dest address */\n };\n \"\"\"\n _fields_ = [\n (\"ip_vhl\", c_uint8),\n (\"ip_tos\", c_uint8),\n (\"ip_len\", c_uint16),\n (\"ip_id\", c_uint16),\n (\"ip_off\", c_uint16),\n (\"ip_ttl\", c_uint8),\n (\"ip_p\", c_uint8),\n (\"ip_sum\", c_uint16),\n (\"ip_src\", c_uint32),\n (\"ip_dst\", c_uint32),\n ]\n\n\n", "metadata": "root.IpHeader", "header": "['module', '___EOS___']", "index": 46 }, { "content": " def get_total_length(self):\n return ntohs(self.ip_len)", "metadata": "root.IpHeader.get_total_length", "header": "['class', 'IpHeader', '(', 'Structure', ')', ':', '___EOS___']", "index": 74 }, { "content": " def get_header_length(self):\n return (self.ip_vhl & 0x0f) * 4", "metadata": "root.IpHeader.get_header_length", "header": "['class', 'IpHeader', '(', 'Structure', ')', ':', '___EOS___']", "index": 77 }, { "content": " def __str__(self):\n return format_structure(self)", "metadata": "root.IpHeader.__str__", "header": "['class', 'IpHeader', '(', 'Structure', ')', ':', '___EOS___']", "index": 80 }, { "content": "class ProcInfo(Structure):\n \"\"\"\n typedef struct {\n pid_t pid;\n pid_t epid;\n char comm[MAX_COMM_LEN];\n } proc_info_t;\n \"\"\"\n MAXCOMLEN = 32\n _fields_ = [\n (\"pid\", c_int32),\n (\"epid\", c_int32),\n (\"comm\", c_char * MAXCOMLEN),\n ]\n", "metadata": "root.ProcInfo", "header": "['module', '___EOS___']", "index": 84 }, { "content": " def __str__(self):\n return format_structure(self)", "metadata": "root.ProcInfo.__str__", "header": "['class', 'ProcInfo', '(', 'Structure', ')', ':', '___EOS___']", "index": 99 }, { "content": "class DivertHandleRaw(Structure):\n \"\"\"\n typedef struct {\n u_int32_t flags;\n int divert_fd;\n int kext_fd;\n int ipfw_id;\n int divert_port;\n int pipe_fd[2];\n int exit_fd[2];\n u_char *divert_buffer;\n size_t bufsize;\n packet_buf_t *thread_buffer;\n size_t thread_buffer_size;\n u_int64_t num_unknown;\n u_int64_t num_diverted;\n divert_error_handler_t err_handler;\n divert_callback_t callback;\n void *callback_args;\n volatile u_char is_looping;\n char *ipfw_filter;\n char errmsg[DIVERT_ERRBUF_SIZE];\n } divert_t;\n \"\"\"\n _fields_ = [\n (\"flags\", c_uint32),\n (\"divert_fd\", c_int),\n (\"kext_fd\", c_int),\n (\"ipfw_id\", c_int),\n (\"divert_port\", c_int),\n (\"pipe_fd\", c_int * 2),\n (\"exit_fd\", c_int * 2),\n (\"divert_buffer\", c_char_p),\n (\"bufsize\", c_size_t),\n (\"thread_buffer\", c_void_p),\n (\"thread_buffer_size\", c_size_t),\n (\"num_unknown\", c_uint64),\n (\"num_diverted\", c_uint64),\n (\"err_handler\", c_void_p),\n (\"callback\", c_void_p),\n (\"callback_args\", c_void_p),\n (\"is_looping\", c_ubyte),\n (\"ipfw_filter\", c_char_p),\n (\"errmsg\", c_char * Defaults.DIVERT_ERRBUF_SIZE)\n ]\n", "metadata": "root.DivertHandleRaw", "header": "['module', '___EOS___']", "index": 103 }, { "content": " def __str__(self):\n return format_structure(self)", "metadata": "root.DivertHandleRaw.__str__", "header": "['class', 'DivertHandleRaw', '(', 'Structure', ')', ':', '___EOS___']", "index": 149 } ]

[ { "span": "from ctypes import (c_uint, c_void_p, c_uint32, c_char_p, ARRAY, c_uint64, c_int32, c_uint16, c_int,\n c_uint8, c_ulong, c_char, c_ubyte, Structure, c_size_t, c_ssize_t)", "start_line": 3, "start_column": 0, "end_line": 4, "end_column": 86 } ]

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[ { "content": "def import_sources( source_list, o ):\n \"\"\"Import Verilog source from all Verilog files source_list, as well\n as any source files specified by `include within those files.\n \"\"\"\n\n if not source_list:\n return\n\n # For now we assume the first file in the sources_list is top?\n\n top_verilog_file = source_list[0]\n\n # All verilog includes are relative to the root of the PyMTL project.\n # We identify the root of the PyMTL project by looking for the special\n # .pymtl-python-path file.\n\n _path = os.path.dirname( top_verilog_file )\n special_file_found = False\n include_path = os.path.dirname( os.path.abspath( top_verilog_file ) )\n while include_path != \"/\":\n if os.path.exists( include_path + os.path.sep + \".pymtl-python-path\" ):\n special_file_found = True\n sys.path.insert(0,include_path)\n break\n include_path = os.path.dirname(include_path)\n\n # If we could not find the special .pymtl-python-path file, then assume\n # the include directory is the same as the directory that contains the\n # verilog file.\n\n if not special_file_found:\n include_path = os.path.dirname( os.path.abspath( top_verilog_file ) )\n\n # Regex to extract verilog filenames from `include statements\n\n include_re = re.compile( r'\"(?P<filename>[\\w/\\.-]*)\"' )\n\n # Iterate through all source files and add any `include files to the\n # list of source files to import.\n\n output_verilog_file( o, include_path, source_list[0] )\n\n # for verilog_file in source_list:\n #\n # print(verilog_file)\n # with open( verilog_file, 'r' ) as fp:\n # for line in fp:\n # if '`include' in line:\n # filename = include_re.search( line ).group( 'filename' )\n # fullname = os.path.join( include_path, filename )\n # if fullname not in source_list:\n # source_list.append( fullname )\n\n # Iterate through all source files in reverse order and write out all\n # source code from imported/`included verilog files. Do this in reverse\n # order to (hopefully) resolve any `define dependencies, and remove any\n # lines with `include statements.\n\n # for verilog_file in reversed( source_list ):\n #\n # # We remove the include directory from the verilog file name to make\n # # error reporting by Verilator more succinct. -cbatten\n #\n # short_verilog_file = verilog_file\n # if verilog_file.startswith( include_path+\"/\" ):\n # short_verilog_file = verilog_file[len(include_path+\"/\"):]\n #\n # src = '`line 1 \"{}\" 0\\n'.format( short_verilog_file )\n #\n # with open( verilog_file, 'r' ) as fp:\n # for line in fp:\n # if '`include' not in line:\n # src += line\n # else:\n # src += \"// \" + line\n #\n # print( src, file=o )", "metadata": "root.import_sources", "header": "['module', '___EOS___']", "index": 237 } ]

[ { "span": "_path ", "start_line": 253, "start_column": 2, "end_line": 253, "end_column": 7 }, { "span": "include_re ", "start_line": 272, "start_column": 2, "end_line": 272, "end_column": 12 } ]

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[ { "content": " def test_register_publisher(self):\n \"\"\" Register a publisher on a clean topic with a good msg type \"\"\"\n topic = \"/test_register_publisher\"\n msg_type = \"std_msgs/String\"\n client = \"client_test_register_publisher\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n\n manager.unregister(client, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_publisher", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 22 }, { "content": " def test_register_publisher_multiclient(self):\n topic = \"/test_register_publisher_multiclient\"\n msg_type = \"std_msgs/String\"\n client1 = \"client_test_register_publisher_1\"\n client2 = \"client_test_register_publisher_2\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client1, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.register(client2, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client1, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client2, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_publisher_multiclient", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 38 }, { "content": " def test_register_publisher_conflicting_types(self):\n topic = \"/test_register_publisher_conflicting_types\"\n msg_type = \"std_msgs/String\"\n msg_type_bad = \"std_msgs/Int32\"\n client = \"client_test_register_publisher_conflicting_types\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n\n self.assertRaises(TypeConflictException, manager.register, \"client2\", topic, msg_type_bad)", "metadata": "root.TestPublisherManager.test_register_publisher_conflicting_types", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 59 }, { "content": " def test_register_multiple_publishers(self):\n topic1 = \"/test_register_multiple_publishers1\"\n topic2 = \"/test_register_multiple_publishers2\"\n msg_type = \"std_msgs/String\"\n client = \"client_test_register_multiple_publishers\"\n\n self.assertFalse(topic1 in manager._publishers)\n self.assertFalse(topic2 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic1))\n self.assertFalse(self.is_topic_published(topic2))\n manager.register(client, topic1, msg_type)\n self.assertTrue(topic1 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic1))\n self.assertFalse(topic2 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic2))\n manager.register(client, topic2, msg_type)\n self.assertTrue(topic1 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic1))\n self.assertTrue(topic2 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic2))\n\n manager.unregister(client, topic1)\n self.assertFalse(topic1 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic1))\n self.assertTrue(topic2 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic2))\n\n manager.unregister(client, topic2)\n self.assertFalse(topic1 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic1))\n self.assertFalse(topic2 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic2))", "metadata": "root.TestPublisherManager.test_register_multiple_publishers", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 73 }, { "content": " def test_register_no_msgtype(self):\n topic = \"/test_register_no_msgtype\"\n client = \"client_test_register_no_msgtype\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n self.assertRaises(TopicNotEstablishedException, manager.register, client, topic)", "metadata": "root.TestPublisherManager.test_register_no_msgtype", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 106 }, { "content": " def test_register_infer_topictype(self):\n topic = \"/test_register_infer_topictype\"\n client = \"client_test_register_infer_topictype\"\n\n self.assertFalse(self.is_topic_published(topic))\n\n rospy.Publisher(topic, String)\n\n self.assertTrue(self.is_topic_published(topic))\n self.assertFalse(topic in manager._publishers)\n manager.register(client, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n\n manager.unregister(client, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_infer_topictype", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 114 }, { "content": " def test_register_multiple_notopictype(self):\n topic = \"/test_register_multiple_notopictype\"\n msg_type = \"std_msgs/String\"\n client1 = \"client_test_register_multiple_notopictype_1\"\n client2 = \"client_test_register_multiple_notopictype_2\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client1, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.register(client2, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client1, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client2, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_multiple_notopictype", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 132 }, { "content": " def test_publish_not_registered(self):\n topic = \"/test_publish_not_registered\"\n msg = {\"data\": \"test publish not registered\"}\n client = \"client_test_publish_not_registered\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n self.assertRaises(TopicNotEstablishedException, manager.publish, client, topic, msg)", "metadata": "root.TestPublisherManager.test_publish_not_registered", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 153 } ]

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[]

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[ { "content": "import threading\nfrom cgi import escape as html_escape\n\nfrom core.models import *\nfrom core.models import Site\nfrom django import forms\nfrom django.contrib import admin, messages\nfrom django.contrib.admin.widgets import (AdminTextareaWidget,\n FilteredSelectMultiple)\nfrom django.contrib.auth.admin import UserAdmin\nfrom django.contrib.auth.forms import (AdminPasswordChangeForm,\n ReadOnlyPasswordHashField)\nfrom django.contrib.auth.models import Group\nfrom django.contrib.auth.signals import user_logged_in\nfrom django.contrib.contenttypes import generic\nfrom django.core.exceptions import PermissionDenied, ValidationError\nfrom django.core.urlresolvers import NoReverseMatch, resolve, reverse\nfrom django.forms.utils import flatatt, to_current_timezone\nfrom django.utils import timezone\nfrom django.utils.encoding import force_text, python_2_unicode_compatible\nfrom django.utils.html import conditional_escape, format_html\nfrom django.utils.safestring import mark_safe\nfrom django.utils.text import capfirst\nfrom openstack.manager import OpenStackManager\nfrom suit.widgets import LinkedSelect\n\n# thread locals necessary to work around a django-suit issue\n_thread_locals = threading.local()\n\nICON_URLS = {\"success\": \"/static/admin/img/icon_success.gif\",\n \"clock\": \"/static/admin/img/icon_clock.gif\",\n \"error\": \"/static/admin/img/icon_error.gif\"}\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# class ContainerPortInline(XOSTabularInline):\n# fields = ['backend_status_icon', 'network', 'container', 'ip', 'mac', 'segmentation_id']\n# readonly_fields = (\"backend_status_icon\", \"ip\", \"mac\", \"segmentation_id\")\n# model = Port\n# selflink_fieldname = \"network\"\n# extra = 0\n# verbose_name_plural = \"Ports\"\n# verbose_name = \"Port\"\n# suit_classes = 'suit-tab suit-tab-ports'\n\n# class ContainerAdmin(XOSBaseAdmin):\n# fieldsets = [\n# ('Container Details', {'fields': ['backend_status_text', 'slice', 'node', 'docker_image', 'volumes', 'no_sync'], 'classes': ['suit-tab suit-tab-general'], })\n# ]\n# readonly_fields = ('backend_status_text', )\n# list_display = ['backend_status_icon', 'id']\n# list_display_links = ('backend_status_icon', 'id', )\n#\n# suit_form_tabs =(('general', 'Container Details'), ('ports', 'Ports'))\n#\n# inlines = [TagInline, ContainerPortInline]\n#\n# def formfield_for_foreignkey(self, db_field, request, **kwargs):\n# if db_field.name == 'slice':\n# kwargs['queryset'] = Slice.select_by_user(request.user)\n#\n# return super(ContainerAdmin, self).formfield_for_foreignkey(db_field, request, **kwargs)\n#\n# def queryset(self, request):\n# # admins can see all instances. Users can only see instances of\n# # the slices they belong to.\n# return Container.select_by_user(request.user)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# register a signal that caches the user's credentials when they log in\n\n\nuser_logged_in.connect(cache_credentials)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n# Now register the new UserAdmin...\nadmin.site.register(User, UserAdmin)\n# ... and, since we're not using Django's builtin permissions,\n# unregister the Group model from admin.\n# admin.site.unregister(Group)\n\n# When debugging it is often easier to see all the classes, but for regular use\n# only the top-levels should be displayed\nshowAll = False\n\nadmin.site.register(Deployment, DeploymentAdmin)\nadmin.site.register(Controller, ControllerAdmin)\nadmin.site.register(Site, SiteAdmin)\nadmin.site.register(Slice, SliceAdmin)\nadmin.site.register(Service, ServiceAdmin)\n#admin.site.register(Reservation, ReservationAdmin)\nadmin.site.register(Network, NetworkAdmin)\nadmin.site.register(Port, PortAdmin)\nadmin.site.register(Router, RouterAdmin)\nadmin.site.register(NetworkTemplate, NetworkTemplateAdmin)\nadmin.site.register(Program, ProgramAdmin)\n#admin.site.register(Account, AccountAdmin)\n#admin.site.register(Invoice, InvoiceAdmin)\n\nif True:\n admin.site.register(NetworkParameterType, NetworkParameterTypeAdmin)\n admin.site.register(ServiceClass, ServiceClassAdmin)\n admin.site.register(Tag, TagAdmin)\n admin.site.register(ControllerRole)\n admin.site.register(SiteRole)\n admin.site.register(SliceRole)\n admin.site.register(Node, NodeAdmin)\n admin.site.register(NodeLabel, NodeLabelAdmin)\n #admin.site.register(SlicePrivilege, SlicePrivilegeAdmin)\n #admin.site.register(SitePrivilege, SitePrivilegeAdmin)\n admin.site.register(Instance, InstanceAdmin)\n admin.site.register(Image, ImageAdmin)\n admin.site.register(DashboardView, DashboardViewAdmin)\n admin.site.register(Flavor, FlavorAdmin)\n admin.site.register(TenantRoot, TenantRootAdmin)\n admin.site.register(TenantRootRole, TenantRootRoleAdmin)\n admin.site.register(TenantRole, TenantRoleAdmin)\n admin.site.register(TenantAttribute, TenantAttributeAdmin)\n admin.site.register(AddressPool, AddressPoolAdmin)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def backend_icon(obj):\n (icon, tooltip) = obj.get_backend_icon()\n\n icon_url = ICON_URLS.get(icon, \"unknown\")\n\n (exponent, last_success, last_failure, failures) = obj.get_backend_details()\n\n # FIXME: Need to clean this up by separating Javascript from Python\n if (obj.pk):\n script = \"\"\"\n <script type=\"text/javascript\">$(document).ready(function () {$(\"#show_details_%d\").click(function () {$(\"#status%d\").dialog({modal: true, height: 200, width: 200 });});});</script>\n \"\"\" % (obj.pk, obj.pk)\n\n div = \"\"\"\n <div style=\"display:none;\" id=\"status%d\" title=\"Details\">\n <p>Backoff Exponent: %r</p>\n <p>Last Success: %r</p>\n <p>Failures: %r</p>\n <p>Last Failure: %r</p>\n </div>\n \"\"\" % (obj.pk, exponent, last_success, failures, last_failure)\n a = '<a id=\"show_details_%d\" href=\"#\">' % obj.pk\n astop = '</a>'\n else:\n div = ''\n script = ''\n a = ''\n astop = ''\n\n if tooltip:\n return '%s %s <span style=\"min-width:16px;\" title=\"%s\">%s<img src=\"%s\">%s</span>' % (script, div, tooltip, a, icon_url, astop)\n else:\n return '<span style=\"min-width:16px;\"><img src=\"%s\"></span>' % icon_url", "metadata": "root.backend_icon", "header": "['module', '___EOS___']", "index": 34 }, { "content": "def backend_text(obj):\n (icon, tooltip) = obj.get_backend_icon()\n icon_url = ICON_URLS.get(icon, \"unknown\")\n\n return '<img src=\"%s\"> %s' % (icon_url, tooltip)", "metadata": "root.backend_text", "header": "['module', '___EOS___']", "index": 69 }, { "content": "class UploadTextareaWidget(AdminTextareaWidget):\n", "metadata": "root.UploadTextareaWidget", "header": "['module', '___EOS___']", "index": 76 }, { "content": " def render(self, name, value, attrs=None):\n if value is None:\n value = ''\n final_attrs = self.build_attrs(attrs, name=name)\n return format_html('<input type=\"file\" style=\"width: 0; height: 0\" id=\"btn_upload_%s\" onChange=\"uploadTextarea(event,\\'%s\\');\">'\n '<button onClick=\"$(\\'#btn_upload_%s\\').click(); return false;\">Upload</button>'\n '<br><textarea{0}>\\r\\n{1}</textarea>' % (\n attrs[\"id\"], attrs[\"id\"], attrs[\"id\"]),\n flatatt(final_attrs),\n force_text(value))", "metadata": "root.UploadTextareaWidget.render", "header": "['class', 'UploadTextareaWidget', '(', 'AdminTextareaWidget', ')', ':', '___EOS___']", "index": 78 }, { "content": "class SliderWidget(forms.HiddenInput):\n", "metadata": "root.SliderWidget", "header": "['module', '___EOS___']", "index": 90 }, { "content": " def render(self, name, value, attrs=None):\n if value is None:\n value = '0'\n final_attrs = self.build_attrs(attrs, name=name)\n attrs = attrs or attrs[:]\n attrs[\"name\"] = name\n attrs[\"value\"] = value\n html = \"\"\"<div style=\"width:640px\"><span id=\"%(id)s_label\">%(value)s</span><div id=\"%(id)s_slider\" style=\"float:right;width:610px;margin-top:5px\"></div></div>\n <script>\n $(function() {\n $(\"#%(id)s_slider\").slider({\n value: %(value)s,\n slide: function(event, ui) { $(\"#%(id)s\").val( ui.value ); $(\"#%(id)s_label\").html(ui.value); },\n });\n });\n </script>\n <input type=\"hidden\" id=\"%(id)s\" name=\"%(name)s\" value=\"%(value)s\"></input>\n \"\"\" % attrs\n html = html.replace(\"{\", \"{{\").replace(\"}\", \"}}\")\n return format_html(html,\n flatatt(final_attrs),\n force_text(value))", "metadata": "root.SliderWidget.render", "header": "['class', 'SliderWidget', '(', 'forms', '.', 'HiddenInput', ')', ':', '___EOS___']", "index": 92 }, { "content": "class PlainTextWidget(forms.HiddenInput):\n input_type = 'hidden'\n", "metadata": "root.PlainTextWidget", "header": "['module', '___EOS___']", "index": 116 }, { "content": " def render(self, name, value, attrs=None):\n if value is None:\n value = ''\n return mark_safe(str(value) + super(PlainTextWidget, self).render(name, value, attrs))", "metadata": "root.PlainTextWidget.render", "header": "['class', 'PlainTextWidget', '(', 'forms', '.', 'HiddenInput', ')', ':', '___EOS___']", "index": 119 }, { "content": "class XOSAdminMixin(object):\n # call save_by_user and delete_by_user instead of save and delete\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n backend_status_icon.short_description = \"\"\n\n", "metadata": "root.XOSAdminMixin", "header": "['module', '___EOS___']", "index": 125 }, { "content": " def has_add_permission(self, request, obj=None):\n return (not self.__user_is_readonly(request))", "metadata": "root.XOSAdminMixin.has_add_permission", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 128 }, { "content": " def has_delete_permission(self, request, obj=None):\n return (not self.__user_is_readonly(request))", "metadata": "root.XOSAdminMixin.has_delete_permission", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 131 }, { "content": " def save_model(self, request, obj, form, change):\n if self.__user_is_readonly(request):\n # this 'if' might be redundant if save_by_user is implemented right\n raise PermissionDenied\n\n # reset exponential backoff\n if hasattr(obj, \"backend_register\"):\n obj.backend_register = \"{}\"\n\n obj.caller = request.user\n # update openstack connection to use this site/tenant\n obj.save_by_user(request.user)", "metadata": "root.XOSAdminMixin.save_model", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 134 }, { "content": " def delete_model(self, request, obj):\n obj.delete_by_user(request.user)", "metadata": "root.XOSAdminMixin.delete_model", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 147 }, { "content": " def save_formset(self, request, form, formset, change):\n instances = formset.save(commit=False)\n for instance in instances:\n instance.caller = request.user\n instance.save_by_user(request.user)\n\n # BUG in django 1.7? Objects are not deleted by formset.save if\n # commit is False. So let's delete them ourselves.\n #\n # code from forms/models.py save_existing_objects()\n try:\n forms_to_delete = formset.deleted_forms\n except AttributeError:\n forms_to_delete = []\n if formset.initial_forms:\n for form in formset.initial_forms:\n obj = form.instance\n if form in forms_to_delete:\n if obj.pk is None:\n continue\n formset.deleted_objects.append(obj)\n obj.delete()\n\n formset.save_m2m()", "metadata": "root.XOSAdminMixin.save_formset", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 150 }, { "content": " def get_actions(self, request):\n actions = super(XOSAdminMixin, self).get_actions(request)\n\n if self.__user_is_readonly(request):\n if 'delete_selected' in actions:\n del actions['delete_selected']\n\n return actions", "metadata": "root.XOSAdminMixin.get_actions", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 175 }, { "content": " def url_for_model_changelist(self, request, model):\n # used in add_extra_context\n return reverse('admin:%s_%s_changelist' % (model._meta.app_label, model._meta.model_name), current_app=model._meta.app_label)", "metadata": "root.XOSAdminMixin.url_for_model_changelist", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 184 }, { "content": " def add_extra_context(self, request, extra_context):\n # allow custom application breadcrumb url and name\n extra_context[\"custom_app_breadcrumb_url\"] = getattr(\n self, \"custom_app_breadcrumb_url\", None)\n extra_context[\"custom_app_breadcrumb_name\"] = getattr(\n self, \"custom_app_breadcrumb_name\", None)\n extra_context[\"custom_changelist_breadcrumb_url\"] = getattr(\n self, \"custom_changelist_breadcrumb_url\", None)\n\n # for Service admins to render their Administration page\n if getattr(self, \"extracontext_registered_admins\", False):\n admins = []\n for model, model_admin in admin.site._registry.items():\n if model == self.model:\n continue\n if model._meta.app_label == self.model._meta.app_label:\n info = {\"app\": model._meta.app_label,\n \"model\": model._meta.model_name,\n \"name\": capfirst(model._meta.verbose_name_plural),\n \"url\": self.url_for_model_changelist(request, model)}\n admins.append(info)\n extra_context[\"registered_admins\"] = admins", "metadata": "root.XOSAdminMixin.add_extra_context", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 188 }, { "content": " def change_view(self, request, object_id, extra_context=None):\n extra_context = extra_context or {}\n\n if self.__user_is_readonly(request):\n if not hasattr(self, \"readonly_save\"):\n # save the original readonly fields\n self.readonly_save = self.readonly_fields\n self.inlines_save = self.inlines\n if hasattr(self, \"user_readonly_fields\"):\n self.readonly_fields = self.user_readonly_fields\n if hasattr(self, \"user_readonly_inlines\"):\n self.inlines = self.user_readonly_inlines\n else:\n if hasattr(self, \"readonly_save\"):\n # restore the original readonly fields\n self.readonly_fields = self.readonly_save\n if hasattr(self, \"inlines_save\"):\n self.inlines = self.inlines_save\n\n self.add_extra_context(request, extra_context)\n\n try:\n return super(XOSAdminMixin, self).change_view(request, object_id, extra_context=extra_context)\n except PermissionDenied:\n pass\n except ValidationError as e:\n if (e.params is None):\n # Validation errors that don't reference a specific field will\n # often throw a non-descriptive 500 page to the user. The code\n # below will cause an error message to be printed and the\n # page refreshed instead.\n # As a side-effect it turns the request back into a 'GET' which\n # may wipe anything the user had changed on the page. But, at\n # least the user gets a real error message.\n # TODO: revisit this and display some kind of error view\n request.method = 'GET'\n messages.error(request, e.message)\n return super(XOSAdminMixin, self).change_view(request, object_id, extra_context=extra_context)\n else:\n raise\n if request.method == 'POST':\n raise PermissionDenied\n request.readonly = True\n return super(XOSAdminMixin, self).change_view(request, object_id, extra_context=extra_context)", "metadata": "root.XOSAdminMixin.change_view", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 211 }, { "content": " def changelist_view(self, request, extra_context=None):\n extra_context = extra_context or {}\n\n self.add_extra_context(request, extra_context)\n\n return super(XOSAdminMixin, self).changelist_view(request, extra_context=extra_context)", "metadata": "root.XOSAdminMixin.changelist_view", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 256 }, { "content": " def add_view(self, request, form_url='', extra_context=None):\n extra_context = extra_context or {}\n\n self.add_extra_context(request, extra_context)\n\n return super(XOSAdminMixin, self).add_view(request, form_url, extra_context=extra_context)", "metadata": "root.XOSAdminMixin.add_view", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 263 }, { "content": " def __user_is_readonly(self, request):\n return request.user.isReadOnlyUser()", "metadata": "root.XOSAdminMixin.__user_is_readonly", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 270 }, { "content": " def backend_status_text(self, obj):\n return mark_safe(backend_text(obj))", "metadata": "root.XOSAdminMixin.backend_status_text", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 273 }, { "content": " def backend_status_icon(self, obj):\n return mark_safe(backend_icon(obj))", "metadata": "root.XOSAdminMixin.backend_status_icon", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 276 }, { "content": " def get_form(self, request, obj=None, **kwargs):\n # Save obj and request in thread-local storage, so suit_form_tabs can\n # use it to determine whether we're in edit or add mode, and can\n # determine whether the user is an admin.\n _thread_locals.request = request\n _thread_locals.obj = obj\n return super(XOSAdminMixin, self).get_form(request, obj, **kwargs)", "metadata": "root.XOSAdminMixin.get_form", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 280 }, { "content": " def get_inline_instances(self, request, obj=None):\n inlines = super(XOSAdminMixin, self).get_inline_instances(request, obj)\n\n # inlines that should only be shown to an admin user\n if request.user.is_admin:\n for inline_class in getattr(self, \"admin_inlines\", []):\n inlines.append(inline_class(self.model, self.admin_site))\n\n return inlines", "metadata": "root.XOSAdminMixin.get_inline_instances", "header": "['class', 'XOSAdminMixin', '(', 'object', ')', ':', '___NEWLINE___', '# call save_by_user and delete_by_user instead of save and delete', '___NL___', '___EOS___']", "index": 288 }, { "content": "class ReadOnlyAwareAdmin(XOSAdminMixin, admin.ModelAdmin):\n # Note: Make sure XOSAdminMixin is listed before\n # admin.ModelAdmin in the class declaration.\n\n pass", "metadata": "root.ReadOnlyAwareAdmin", "header": "['module', '___EOS___']", "index": 299 }, { "content": "class XOSBaseAdmin(ReadOnlyAwareAdmin):\n save_on_top = False", "metadata": "root.XOSBaseAdmin", "header": "['module', '___EOS___']", "index": 306 }, { "content": "class SingletonAdmin (ReadOnlyAwareAdmin):\n", "metadata": "root.SingletonAdmin", "header": "['module', '___EOS___']", "index": 310 }, { "content": " def has_add_permission(self, request):\n if not super(SingletonAdmin, self).has_add_permission(request):\n return False\n\n num_objects = self.model.objects.count()\n if num_objects >= 1:\n return False\n else:\n return True", "metadata": "root.SingletonAdmin.has_add_permission", "header": "['class', 'SingletonAdmin', '(', 'ReadOnlyAwareAdmin', ')', ':', '___EOS___']", "index": 312 }, { "content": "class ServiceAppAdmin (SingletonAdmin):\n extracontext_registered_admins = True", "metadata": "root.ServiceAppAdmin", "header": "['module', '___EOS___']", "index": 323 }, { "content": "class XOSTabularInline(admin.TabularInline):\n\n\n\n\n\n\n\n selflink.allow_tags = True\n selflink.short_description = \"Details\"\n\n\n\n backend_status_icon.short_description = \"\"", "metadata": "root.XOSTabularInline", "header": "['module', '___EOS___']", "index": 327 }, { "content": " def __init__(self, *args, **kwargs):\n super(XOSTabularInline, self).__init__(*args, **kwargs)\n\n # InlineModelAdmin as no get_fields() method, so in order to add\n # the selflink field, we override __init__ to modify self.fields and\n # self.readonly_fields.\n\n self.setup_selflink()", "metadata": "root.XOSTabularInline.__init__", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 329 }, { "content": " @property\n def selflink_model(self):\n if hasattr(self, \"selflink_fieldname\"):\n \"\"\" self.selflink_model can be defined to punch through a relation\n to its target object. For example, in SliceNetworkInline, set\n selflink_model = \"network\", and the URL will lead to the Network\n object instead of trying to bring up a change view of the\n SliceNetwork object.\n \"\"\"\n return getattr(self.model, self.selflink_fieldname).field.rel.to\n else:\n return self.model", "metadata": "root.XOSTabularInline.selflink_model", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 338 }, { "content": " @property\n def selflink_reverse_path(self):\n return \"admin:%s_change\" % (self.selflink_model._meta.db_table)", "metadata": "root.XOSTabularInline.selflink_reverse_path", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 351 }, { "content": " def get_change_url(self, id):\n \"\"\" Get the URL to a change form in the admin for this model \"\"\"\n reverse_path = self.selflink_reverse_path # \"admin:%s_change\" % (self.selflink_model._meta.db_table)\n try:\n url = reverse(reverse_path, args=(id,))\n except NoReverseMatch:\n return None\n\n return url", "metadata": "root.XOSTabularInline.get_change_url", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 355 }, { "content": " def setup_selflink(self):\n url = self.get_change_url(0)\n\n # We don't have an admin for this object, so don't create the\n # selflink.\n if (url == None):\n return\n\n # Since we need to add \"selflink\" to the field list, we need to create\n # self.fields if it is None.\n if (self.fields is None):\n self.fields = []\n for f in self.model._meta.fields:\n if f.editable and f.name != \"id\":\n self.fields.append(f.name)\n\n self.fields = tuple(self.fields) + (\"selflink\", )\n\n if self.readonly_fields is None:\n self.readonly_fields = ()\n\n self.readonly_fields = tuple(self.readonly_fields) + (\"selflink\", )", "metadata": "root.XOSTabularInline.setup_selflink", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 365 }, { "content": " def selflink(self, obj):\n if hasattr(self, \"selflink_fieldname\"):\n obj = getattr(obj, self.selflink_fieldname)\n\n if obj.id:\n url = self.get_change_url(obj.id)\n return \"<a href='%s'>Details</a>\" % str(url)\n else:\n return \"Not present\"", "metadata": "root.XOSTabularInline.selflink", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 388 }, { "content": " def has_add_permission(self, request):\n return not request.user.isReadOnlyUser()", "metadata": "root.XOSTabularInline.has_add_permission", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 401 }, { "content": " def get_readonly_fields(self, request, obj=None):\n readonly_fields = list(self.readonly_fields)[:]\n if request.user.isReadOnlyUser():\n for field in self.fields:\n if not field in readonly_fields:\n readonly_fields.append(field)\n return readonly_fields", "metadata": "root.XOSTabularInline.get_readonly_fields", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 404 }, { "content": " def backend_status_icon(self, obj):\n return mark_safe(backend_icon(obj))", "metadata": "root.XOSTabularInline.backend_status_icon", "header": "['class', 'XOSTabularInline', '(', 'admin', '.', 'TabularInline', ')', ':', '___EOS___']", "index": 412 }, { "content": "class PlStackGenericTabularInline(generic.GenericTabularInline):\n\n\n\n backend_status_icon.short_description = \"\"", "metadata": "root.PlStackGenericTabularInline", "header": "['module', '___EOS___']", "index": 417 }, { "content": " def has_add_permission(self, request):\n return not request.user.isReadOnlyUser()", "metadata": "root.PlStackGenericTabularInline.has_add_permission", "header": "['class', 'PlStackGenericTabularInline', '(', 'generic', '.', 'GenericTabularInline', ')', ':', '___EOS___']", "index": 419 }, { "content": " def get_readonly_fields(self, request, obj=None):\n readonly_fields = list(self.readonly_fields)[:]\n if request.user.isReadOnlyUser():\n for field in self.fields:\n if not field in readonly_fields:\n readonly_fields.append(field)\n return readonly_fields", "metadata": "root.PlStackGenericTabularInline.get_readonly_fields", "header": "['class', 'PlStackGenericTabularInline', '(', 'generic', '.', 'GenericTabularInline', ')', ':', '___EOS___']", "index": 422 }, { "content": " def backend_status_icon(self, obj):\n return mark_safe(backend_icon(obj))", "metadata": "root.PlStackGenericTabularInline.backend_status_icon", "header": "['class', 'PlStackGenericTabularInline', '(', 'generic', '.', 'GenericTabularInline', ')', ':', '___EOS___']", "index": 430 }, { "content": "class ReservationInline(XOSTabularInline):\n model = Reservation\n extra = 0\n suit_classes = 'suit-tab suit-tab-reservations'\n", "metadata": "root.ReservationInline", "header": "['module', '___EOS___']", "index": 435 }, { "content": " def queryset(self, request):\n return Reservation.select_by_user(request.user)", "metadata": "root.ReservationInline.queryset", "header": "['class', 'ReservationInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 440 }, { "content": "class TagInline(PlStackGenericTabularInline):\n model = Tag\n extra = 0\n suit_classes = 'suit-tab suit-tab-tags'\n fields = ['service', 'name', 'value']\n", "metadata": "root.TagInline", "header": "['module', '___EOS___']", "index": 444 }, { "content": " def queryset(self, request):\n return Tag.select_by_user(request.user)", "metadata": "root.TagInline.queryset", "header": "['class', 'TagInline', '(', 'PlStackGenericTabularInline', ')', ':', '___EOS___']", "index": 450 }, { "content": "class InstanceInline(XOSTabularInline):\n model = Instance\n fields = ['backend_status_icon', 'all_ips_string', 'instance_id',\n 'instance_name', 'slice', 'deployment', 'flavor', 'image', 'node']\n extra = 0\n max_num = 0\n readonly_fields = ['backend_status_icon', 'all_ips_string', 'instance_id',\n 'instance_name', 'slice', 'deployment', 'flavor', 'image', 'node']\n suit_classes = 'suit-tab suit-tab-instances'\n\n", "metadata": "root.InstanceInline", "header": "['module', '___EOS___']", "index": 454 }, { "content": " def queryset(self, request):\n return Instance.select_by_user(request.user)", "metadata": "root.InstanceInline.queryset", "header": "['class', 'InstanceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 464 }, { "content": " def formfield_for_foreignkey(self, db_field, request=None, **kwargs):\n if db_field.name == 'deployment':\n kwargs['queryset'] = Deployment.select_by_acl(request.user).filter(\n sitedeployments__nodes__isnull=False).distinct()\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"instance_deployment_changed(this);\"})\n if db_field.name == 'flavor':\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"instance_flavor_changed(this);\"})\n\n field = super(InstanceInline, self).formfield_for_foreignkey(\n db_field, request, **kwargs)\n\n return field", "metadata": "root.InstanceInline.formfield_for_foreignkey", "header": "['class', 'InstanceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 467 }, { "content": "class CordInstanceInline(XOSTabularInline):\n model = Instance\n fields = ['backend_status_icon', 'all_ips_string', 'instance_id',\n 'instance_name', 'slice', 'flavor', 'image', 'node']\n extra = 0\n readonly_fields = ['backend_status_icon',\n 'all_ips_string', 'instance_id', 'instance_name']\n suit_classes = 'suit-tab suit-tab-instances'\n\n", "metadata": "root.CordInstanceInline", "header": "['module', '___EOS___']", "index": 483 }, { "content": " def queryset(self, request):\n return Instance.select_by_user(request.user)", "metadata": "root.CordInstanceInline.queryset", "header": "['class', 'CordInstanceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 492 }, { "content": " def formfield_for_foreignkey(self, db_field, request=None, **kwargs):\n if db_field.name == 'deployment':\n\n kwargs['queryset'] = Deployment.select_by_acl(request.user).filter(\n sitedeployments__nodes__isnull=False).distinct()\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"instance_deployment_changed(this);\"})\n if db_field.name == 'flavor':\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"instance_flavor_changed(this);\"})\n\n field = super(CordInstanceInline, self).formfield_for_foreignkey(\n db_field, request, **kwargs)\n\n return field", "metadata": "root.CordInstanceInline.formfield_for_foreignkey", "header": "['class', 'CordInstanceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 495 }, { "content": "class SiteInline(XOSTabularInline):\n model = Site\n extra = 0\n suit_classes = 'suit-tab suit-tab-sites'\n", "metadata": "root.SiteInline", "header": "['module', '___EOS___']", "index": 512 }, { "content": " def queryset(self, request):\n return Site.select_by_user(request.user)", "metadata": "root.SiteInline.queryset", "header": "['class', 'SiteInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 517 }, { "content": "class SiteHostsNodesInline(SiteInline):\n", "metadata": "root.SiteHostsNodesInline", "header": "['module', '___EOS___']", "index": 521 }, { "content": " def queryset(self, request):\n return Site.select_by_user(request.user).filter(hosts_nodes=True)", "metadata": "root.SiteHostsNodesInline.queryset", "header": "['class', 'SiteHostsNodesInline', '(', 'SiteInline', ')', ':', '___EOS___']", "index": 523 }, { "content": "class SiteHostsUsersInline(SiteInline):\n", "metadata": "root.SiteHostsUsersInline", "header": "['module', '___EOS___']", "index": 527 }, { "content": " def queryset(self, request):\n return Site.select_by_user(request.user).filter(hosts_users=True)", "metadata": "root.SiteHostsUsersInline.queryset", "header": "['class', 'SiteHostsUsersInline', '(', 'SiteInline', ')', ':', '___EOS___']", "index": 529 }, { "content": "class UserInline(XOSTabularInline):\n model = User\n fields = ['backend_status_icon', 'email', 'firstname', 'lastname']\n readonly_fields = ('backend_status_icon', )\n extra = 0\n suit_classes = 'suit-tab suit-tab-users'\n", "metadata": "root.UserInline", "header": "['module', '___EOS___']", "index": 533 }, { "content": " def queryset(self, request):\n return User.select_by_user(request.user)", "metadata": "root.UserInline.queryset", "header": "['class', 'UserInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 540 }, { "content": "class SliceInline(XOSTabularInline):\n model = Slice\n fields = ['backend_status_icon', 'name', 'site', 'serviceClass', 'service']\n readonly_fields = ('backend_status_icon', )\n extra = 0\n suit_classes = 'suit-tab suit-tab-slices'\n", "metadata": "root.SliceInline", "header": "['module', '___EOS___']", "index": 544 }, { "content": " def queryset(self, request):\n return Slice.select_by_user(request.user)", "metadata": "root.SliceInline.queryset", "header": "['class', 'SliceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 551 }, { "content": "class NodeInline(XOSTabularInline):\n model = Node\n extra = 0\n suit_classes = 'suit-tab suit-tab-nodes'\n fields = ['backend_status_icon', 'name', 'site_deployment']\n readonly_fields = ('backend_status_icon', )", "metadata": "root.NodeInline", "header": "['module', '___EOS___']", "index": 555 }, { "content": "class DeploymentPrivilegeInline(XOSTabularInline):\n model = DeploymentPrivilege\n extra = 0\n suit_classes = 'suit-tab suit-tab-deploymentprivileges'\n fields = ['backend_status_icon', 'user', 'role', 'deployment']\n readonly_fields = ('backend_status_icon', )\n", "metadata": "root.DeploymentPrivilegeInline", "header": "['module', '___EOS___']", "index": 563 }, { "content": " def queryset(self, request):\n return DeploymentPrivilege.select_by_user(request.user)", "metadata": "root.DeploymentPrivilegeInline.queryset", "header": "['class', 'DeploymentPrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 570 }, { "content": "class ControllerSiteInline(XOSTabularInline):\n model = ControllerSite\n extra = 0\n suit_classes = 'suit-tab suit-tab-admin-only'\n fields = ['controller', 'site', 'tenant_id']", "metadata": "root.ControllerSiteInline", "header": "['module', '___EOS___']", "index": 574 }, { "content": "class SitePrivilegeInline(XOSTabularInline):\n model = SitePrivilege\n extra = 0\n suit_classes = 'suit-tab suit-tab-siteprivileges'\n fields = ['backend_status_icon', 'user', 'site', 'role']\n readonly_fields = ('backend_status_icon', )\n\n", "metadata": "root.SitePrivilegeInline", "header": "['module', '___EOS___']", "index": 581 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'site':\n kwargs['queryset'] = Site.select_by_user(request.user)\n\n if db_field.name == 'user':\n kwargs['queryset'] = User.select_by_user(request.user)\n return super(SitePrivilegeInline, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SitePrivilegeInline.formfield_for_foreignkey", "header": "['class', 'SitePrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 588 }, { "content": " def queryset(self, request):\n return SitePrivilege.select_by_user(request.user)", "metadata": "root.SitePrivilegeInline.queryset", "header": "['class', 'SitePrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 596 }, { "content": "class ServicePrivilegeInline(XOSTabularInline):\n model = ServicePrivilege\n extra = 0\n suit_classes = 'suit-tab suit-tab-serviceprivileges'\n fields = ['backend_status_icon', 'user', 'service', 'role']\n readonly_fields = ('backend_status_icon', )\n\n", "metadata": "root.ServicePrivilegeInline", "header": "['module', '___EOS___']", "index": 600 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'service':\n kwargs['queryset'] = Service.select_by_user(request.user)\n if db_field.name == 'user':\n kwargs['queryset'] = User.select_by_user(request.user)\n return super(ServicePrivilegeInline, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.ServicePrivilegeInline.formfield_for_foreignkey", "header": "['class', 'ServicePrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 607 }, { "content": " def queryset(self, request):\n return ServicePrivilege.select_by_user(request.user)", "metadata": "root.ServicePrivilegeInline.queryset", "header": "['class', 'ServicePrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 614 }, { "content": "class SiteDeploymentInline(XOSTabularInline):\n model = SiteDeployment\n extra = 0\n suit_classes = 'suit-tab suit-tab-sitedeployments'\n fields = ['backend_status_icon', 'deployment', 'site', 'controller']\n readonly_fields = ('backend_status_icon', )\n\n", "metadata": "root.SiteDeploymentInline", "header": "['module', '___EOS___']", "index": 618 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'site':\n kwargs['queryset'] = Site.select_by_user(request.user)\n\n if db_field.name == 'deployment':\n kwargs['queryset'] = Deployment.select_by_user(request.user)\n\n if db_field.name == 'controller':\n if len(resolve(request.path).args) > 0:\n kwargs['queryset'] = Controller.select_by_user(request.user).filter(\n deployment__id=int(resolve(request.path).args[0]))\n\n return super(SiteDeploymentInline, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SiteDeploymentInline.formfield_for_foreignkey", "header": "['class', 'SiteDeploymentInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 625 }, { "content": " def queryset(self, request):\n return SiteDeployment.select_by_user(request.user)", "metadata": "root.SiteDeploymentInline.queryset", "header": "['class', 'SiteDeploymentInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 639 }, { "content": "class SlicePrivilegeInline(XOSTabularInline):\n model = SlicePrivilege\n suit_classes = 'suit-tab suit-tab-sliceprivileges'\n extra = 0\n fields = ('backend_status_icon', 'user', 'slice', 'role')\n readonly_fields = ('backend_status_icon', )\n\n", "metadata": "root.SlicePrivilegeInline", "header": "['module', '___EOS___']", "index": 643 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'slice':\n kwargs['queryset'] = Slice.select_by_user(request.user)\n if db_field.name == 'user':\n # all users are available to be granted SlicePrivilege\n kwargs['queryset'] = User.objects.all()\n\n return super(SlicePrivilegeInline, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SlicePrivilegeInline.formfield_for_foreignkey", "header": "['class', 'SlicePrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 650 }, { "content": " def queryset(self, request):\n return SlicePrivilege.select_by_user(request.user)", "metadata": "root.SlicePrivilegeInline.queryset", "header": "['class', 'SlicePrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 659 }, { "content": "class SliceNetworkInline(XOSTabularInline):\n model = Network.slices.through\n selflink_fieldname = \"network\"\n extra = 0\n verbose_name = \"Network Connection\"\n verbose_name_plural = \"Network Connections\"\n suit_classes = 'suit-tab suit-tab-slicenetworks'\n fields = ['backend_status_icon', 'network']\n readonly_fields = ('backend_status_icon', )", "metadata": "root.SliceNetworkInline", "header": "['module', '___EOS___']", "index": 663 }, { "content": "class ImageDeploymentsInline(XOSTabularInline):\n model = ImageDeployments\n extra = 0\n verbose_name = \"Image Deployments\"\n verbose_name_plural = \"Image Deployments\"\n suit_classes = 'suit-tab suit-tab-imagedeployments'\n fields = ['backend_status_icon', 'image', 'deployment']\n readonly_fields = ['backend_status_icon']", "metadata": "root.ImageDeploymentsInline", "header": "['module', '___EOS___']", "index": 674 }, { "content": "class ControllerImagesInline(XOSTabularInline):\n model = ControllerImages\n extra = 0\n verbose_name = \"Controller Images\"\n verbose_name_plural = \"Controller Images\"\n suit_classes = 'suit-tab suit-tab-admin-only'\n fields = ['backend_status_icon', 'image', 'controller', 'glance_image_id']\n readonly_fields = ['backend_status_icon', 'glance_image_id']", "metadata": "root.ControllerImagesInline", "header": "['module', '___EOS___']", "index": 684 }, { "content": "class SliceRoleAdmin(XOSBaseAdmin):\n model = SliceRole\n pass", "metadata": "root.SliceRoleAdmin", "header": "['module', '___EOS___']", "index": 694 }, { "content": "class SiteRoleAdmin(XOSBaseAdmin):\n model = SiteRole\n pass", "metadata": "root.SiteRoleAdmin", "header": "['module', '___EOS___']", "index": 699 }, { "content": "class DeploymentAdminForm(forms.ModelForm):\n images = forms.ModelMultipleChoiceField(\n queryset=Image.objects.all(),\n required=False,\n help_text=\"Select which images should be deployed on this deployment\",\n widget=FilteredSelectMultiple(\n verbose_name=('Images'), is_stacked=False\n )\n )\n flavors = forms.ModelMultipleChoiceField(\n queryset=Flavor.objects.all(),\n required=False,\n help_text=\"Select which flavors should be usable on this deployment\",\n widget=FilteredSelectMultiple(\n verbose_name=('Flavors'), is_stacked=False\n )\n )\n\n class Meta:\n model = Deployment\n many_to_many = [\"flavors\", ]\n\n\n", "metadata": "root.DeploymentAdminForm", "header": "['module', '___EOS___']", "index": 704 }, { "content": " def __init__(self, *args, **kwargs):\n request = kwargs.pop('request', None)\n super(DeploymentAdminForm, self).__init__(*args, **kwargs)\n\n self.fields['accessControl'].initial = \"allow site \" + \\\n request.user.site.name\n\n if self.instance and self.instance.pk:\n self.fields['images'].initial = [\n x.image for x in self.instance.imagedeployments.all()]\n self.fields['flavors'].initial = self.instance.flavors.all()", "metadata": "root.DeploymentAdminForm.__init__", "header": "['class', 'DeploymentAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 726 }, { "content": " def manipulate_m2m_objs(self, this_obj, selected_objs, all_relations, relation_class, local_attrname, foreign_attrname):\n \"\"\" helper function for handling m2m relations from the MultipleChoiceField\n\n this_obj: the source object we want to link from\n\n selected_objs: a list of destination objects we want to link to\n\n all_relations: the full set of relations involving this_obj, including ones we don't want\n\n relation_class: the class that implements the relation from source to dest\n\n local_attrname: field name representing this_obj in relation_class\n\n foreign_attrname: field name representing selected_objs in relation_class\n\n This function will remove all newobjclass relations from this_obj\n that are not contained in selected_objs, and add any relations that\n are in selected_objs but don't exist in the data model yet.\n \"\"\"\n\n existing_dest_objs = []\n for relation in list(all_relations):\n if getattr(relation, foreign_attrname) not in selected_objs:\n # print \"deleting site\", sdp.site\n relation.delete()\n else:\n existing_dest_objs.append(getattr(relation, foreign_attrname))\n\n for dest_obj in selected_objs:\n if dest_obj not in existing_dest_objs:\n # print \"adding site\", site\n kwargs = {foreign_attrname: dest_obj, local_attrname: this_obj}\n relation = relation_class(**kwargs)\n relation.save()", "metadata": "root.DeploymentAdminForm.manipulate_m2m_objs", "header": "['class', 'DeploymentAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 738 }, { "content": " def save(self, commit=True):\n deployment = super(DeploymentAdminForm, self).save(commit=False)\n\n if commit:\n deployment.save()\n # this has to be done after save() if/when a deployment is first\n # created\n deployment.flavors = self.cleaned_data['flavors']\n\n if deployment.pk:\n # save_m2m() doesn't seem to work with 'through' relations. So we\n # create/destroy the through models ourselves. There has to be\n # a better way...\n\n self.manipulate_m2m_objs(deployment, self.cleaned_data[\n 'images'], deployment.imagedeployments.all(), ImageDeployments, \"deployment\", \"image\")\n # manipulate_m2m_objs doesn't work for Flavor/Deployment relationship\n # so well handle that manually here\n for flavor in deployment.flavors.all():\n if getattr(flavor, 'name') not in self.cleaned_data['flavors']:\n deployment.flavors.remove(flavor)\n for flavor in self.cleaned_data['flavors']:\n if flavor not in deployment.flavors.all():\n flavor.deployments.add(deployment)\n\n self.save_m2m()\n\n return deployment", "metadata": "root.DeploymentAdminForm.save", "header": "['class', 'DeploymentAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 773 }, { "content": "class DeploymentAdminROForm(DeploymentAdminForm):\n", "metadata": "root.DeploymentAdminROForm", "header": "['module', '___EOS___']", "index": 803 }, { "content": " def save(self, commit=True):\n raise PermissionDenied", "metadata": "root.DeploymentAdminROForm.save", "header": "['class', 'DeploymentAdminROForm', '(', 'DeploymentAdminForm', ')', ':', '___EOS___']", "index": 805 }, { "content": "class SiteAssocInline(XOSTabularInline):\n model = Site.deployments.through\n extra = 0\n suit_classes = 'suit-tab suit-tab-sites'", "metadata": "root.SiteAssocInline", "header": "['module', '___EOS___']", "index": 809 }, { "content": "class DeploymentAdmin(XOSBaseAdmin):\n model = Deployment\n fieldList = ['backend_status_text', 'name',\n 'images', 'flavors', 'accessControl']\n fieldsets = [\n (None, {'fields': fieldList, 'classes': ['suit-tab suit-tab-general']})]\n # node no longer directly connected to deployment\n #inlines = [DeploymentPrivilegeInline,NodeInline,TagInline,ImageDeploymentsInline]\n inlines = [DeploymentPrivilegeInline, TagInline,\n ImageDeploymentsInline, SiteDeploymentInline]\n list_display = ['backend_status_icon', 'name']\n list_display_links = ('backend_status_icon', 'name', )\n readonly_fields = ('backend_status_text', )\n\n user_readonly_fields = ['name']\n\n # nodes no longer direclty connected to deployments\n suit_form_tabs = (('general', 'Deployment Details'),\n ('deploymentprivileges', 'Privileges'), ('sitedeployments', 'Sites'))\n", "metadata": "root.DeploymentAdmin", "header": "['module', '___EOS___']", "index": 815 }, { "content": " def get_form(self, request, obj=None, **kwargs):\n if request.user.isReadOnlyUser() or not request.user.is_admin:\n kwargs[\"form\"] = DeploymentAdminROForm\n else:\n kwargs[\"form\"] = DeploymentAdminForm\n adminForm = super(DeploymentAdmin, self).get_form(\n request, obj, **kwargs)\n\n # from stackexchange: pass the request object into the form\n\n class AdminFormMetaClass(adminForm):\n\n def __new__(cls, *args, **kwargs):\n kwargs['request'] = request\n return adminForm(*args, **kwargs)\n\n return AdminFormMetaClass", "metadata": "root.DeploymentAdmin.get_form", "header": "['class', 'DeploymentAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 835 }, { "content": "class ControllerAdminForm(forms.ModelForm):\n backend_disabled = forms.BooleanField(required=False)\n\n class Meta:\n model = Controller\n\n", "metadata": "root.ControllerAdminForm", "header": "['module', '___EOS___']", "index": 854 }, { "content": " def __init__(self, *args, **kwargs):\n request = kwargs.pop('request', None)\n super(ControllerAdminForm, self).__init__(*args, **kwargs)\n\n if self.instance and self.instance.pk:\n self.fields['backend_disabled'].initial = self.instance.get_backend_register(\n 'disabled', False)\n else:\n # defaults when adding new controller\n self.fields['backend_disabled'].initial = False", "metadata": "root.ControllerAdminForm.__init__", "header": "['class', 'ControllerAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 860 }, { "content": " def save(self, commit=True):\n self.instance.set_backend_register(\n \"disabled\", self.cleaned_data[\"backend_disabled\"])\n return super(ControllerAdminForm, self).save(commit=commit)", "metadata": "root.ControllerAdminForm.save", "header": "['class', 'ControllerAdminForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 871 }, { "content": "class ControllerAdmin(XOSBaseAdmin):\n model = Controller\n fieldList = ['deployment', 'name', 'backend_type', 'backend_disabled', 'version', 'auth_url', 'admin_user',\n 'admin_tenant', 'admin_password', 'domain', 'rabbit_host', 'rabbit_user', 'rabbit_password']\n fieldsets = [\n (None, {'fields': fieldList, 'classes': ['suit-tab suit-tab-general']})]\n inlines = [ControllerSiteInline] # ,ControllerImagesInline]\n list_display = ['backend_status_icon', 'name', 'version', 'backend_type']\n list_display_links = ('backend_status_icon', 'name', )\n readonly_fields = ('backend_status_text',)\n form = ControllerAdminForm\n\n user_readonly_fields = []\n\n\n\n", "metadata": "root.ControllerAdmin", "header": "['module', '___EOS___']", "index": 877 }, { "content": " def save_model(self, request, obj, form, change):\n # update openstack connection to use this site/tenant\n obj.save_by_user(request.user)", "metadata": "root.ControllerAdmin.save_model", "header": "['class', 'ControllerAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 891 }, { "content": " def delete_model(self, request, obj):\n obj.delete_by_user(request.user)", "metadata": "root.ControllerAdmin.delete_model", "header": "['class', 'ControllerAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 895 }, { "content": " def queryset(self, request):\n return Controller.select_by_user(request.user)", "metadata": "root.ControllerAdmin.queryset", "header": "['class', 'ControllerAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 898 }, { "content": " @property\n def suit_form_tabs(self):\n tabs = [('general', 'Controller Details'),\n ]\n\n request = getattr(_thread_locals, \"request\", None)\n if request and request.user.is_admin:\n tabs.append(('admin-only', 'Admin-Only'))\n\n return tabs", "metadata": "root.ControllerAdmin.suit_form_tabs", "header": "['class', 'ControllerAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 901 }, { "content": "class TenantAttributeAdmin(XOSBaseAdmin):\n model = TenantAttribute\n list_display = ('backend_status_icon', 'tenant', 'name', 'value')\n list_display_links = ('backend_status_icon', 'name')\n fieldList = ('backend_status_text', 'tenant', 'name', 'value', )\n fieldsets = [\n (None, {'fields': fieldList, 'classes': ['suit-tab suit-tab-general']})]\n readonly_fields = ('backend_status_text', )\n\n suit_form_tabs = (('general', 'Tenant Root Details'),\n )", "metadata": "root.TenantAttributeAdmin", "header": "['module', '___EOS___']", "index": 913 }, { "content": "class TenantAttrAsTabInline(XOSTabularInline):\n model = TenantAttribute\n fields = ['name', 'value']\n extra = 0\n suit_classes = 'suit-tab suit-tab-tenantattrs'", "metadata": "root.TenantAttrAsTabInline", "header": "['module', '___EOS___']", "index": 926 }, { "content": "class TenantRootRoleAdmin(XOSBaseAdmin):\n model = TenantRootRole\n fields = ('role',)", "metadata": "root.TenantRootRoleAdmin", "header": "['module', '___EOS___']", "index": 933 }, { "content": "class TenantRootTenantInline(XOSTabularInline):\n model = Tenant\n fields = ['provider_service', 'subscriber_root']\n extra = 0\n suit_classes = 'suit-tab suit-tab-tenantroots'\n fk_name = 'subscriber_root'\n verbose_name = 'subscribed tenant'\n verbose_name_plural = 'subscribed tenants'\n\n # def queryset(self, request):\n # qs = super(TenantRootTenantInline, self).queryset(request)\n # return qs.filter(kind=\"coarse\")", "metadata": "root.TenantRootTenantInline", "header": "['module', '___EOS___']", "index": 938 }, { "content": "class TenantRootPrivilegeInline(XOSTabularInline):\n model = TenantRootPrivilege\n extra = 0\n suit_classes = 'suit-tab suit-tab-tenantrootprivileges'\n fields = ['backend_status_icon', 'user', 'role', 'tenant_root']\n readonly_fields = ('backend_status_icon', )\n", "metadata": "root.TenantRootPrivilegeInline", "header": "['module', '___EOS___']", "index": 952 }, { "content": " def queryset(self, request):\n return TenantRootPrivilege.select_by_user(request.user)", "metadata": "root.TenantRootPrivilegeInline.queryset", "header": "['class', 'TenantRootPrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 959 }, { "content": "class TenantRootAdmin(XOSBaseAdmin):\n model = TenantRoot\n list_display = ('backend_status_icon', 'name', 'kind')\n list_display_links = ('backend_status_icon', 'name')\n fieldList = ('backend_status_text', 'name', 'kind', )\n fieldsets = [\n (None, {'fields': fieldList, 'classes': ['suit-tab suit-tab-general']})]\n inlines = (TenantRootTenantInline, TenantRootPrivilegeInline)\n readonly_fields = ('backend_status_text', )\n\n suit_form_tabs = (('general', 'Tenant Root Details'),\n ('tenantroots', 'Tenancy'),\n ('tenantrootprivileges', 'Privileges')\n )", "metadata": "root.TenantRootAdmin", "header": "['module', '___EOS___']", "index": 963 }, { "content": "class TenantRoleAdmin(XOSBaseAdmin):\n \"\"\"Admin for TenantRoles.\"\"\"\n model = TenantRole\n fields = ('role',)", "metadata": "root.TenantRoleAdmin", "header": "['module', '___EOS___']", "index": 979 }, { "content": "class TenantPrivilegeInline(XOSTabularInline):\n \"\"\"Inline for adding a TenantPrivilege to a Tenant.\"\"\"\n model = TenantPrivilege\n extra = 0\n suit_classes = 'suit-tab suit-tab-tenantprivileges'\n fields = ['backend_status_icon', 'user', 'role', 'tenant']\n readonly_fields = ('backend_status_icon', )\n", "metadata": "root.TenantPrivilegeInline", "header": "['module', '___EOS___']", "index": 985 }, { "content": " def queryset(self, request):\n return TenantPrivilege.select_by_user(request.user)", "metadata": "root.TenantPrivilegeInline.queryset", "header": "['class', 'TenantPrivilegeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 993 }, { "content": "class ProviderTenantInline(XOSTabularInline):\n model = CoarseTenant\n fields = ['provider_service', 'subscriber_service', 'connect_method']\n extra = 0\n suit_classes = 'suit-tab suit-tab-servicetenants'\n fk_name = 'provider_service'\n verbose_name = 'provided tenant'\n verbose_name_plural = 'provided tenants'\n", "metadata": "root.ProviderTenantInline", "header": "['module', '___EOS___']", "index": 997 }, { "content": " def queryset(self, request):\n qs = super(ProviderTenantInline, self).queryset(request)\n return qs.filter(kind=\"coarse\")", "metadata": "root.ProviderTenantInline.queryset", "header": "['class', 'ProviderTenantInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 1006 }, { "content": "class SubscriberTenantInline(XOSTabularInline):\n model = CoarseTenant\n fields = ['provider_service', 'subscriber_service', 'connect_method']\n extra = 0\n suit_classes = 'suit-tab suit-tab-servicetenants'\n fk_name = 'subscriber_service'\n verbose_name = 'subscribed tenant'\n verbose_name_plural = 'subscribed tenants'\n", "metadata": "root.SubscriberTenantInline", "header": "['module', '___EOS___']", "index": 1011 }, { "content": " def queryset(self, request):\n qs = super(SubscriberTenantInline, self).queryset(request)\n return qs.filter(kind=\"coarse\")", "metadata": "root.SubscriberTenantInline.queryset", "header": "['class', 'SubscriberTenantInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 1020 }, { "content": "class ServiceAttrAsTabInline(XOSTabularInline):\n model = ServiceAttribute\n fields = ['name', 'value']\n extra = 0\n suit_classes = 'suit-tab suit-tab-serviceattrs'", "metadata": "root.ServiceAttrAsTabInline", "header": "['module', '___EOS___']", "index": 1025 }, { "content": "class ServiceAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"name\", \"kind\",\n \"versionNumber\", \"enabled\", \"published\")\n list_display_links = ('backend_status_icon', 'name', )\n fieldList = [\"backend_status_text\", \"name\", \"kind\", \"description\", \"versionNumber\", \"enabled\", \"published\",\n \"view_url\", \"icon_url\", \"public_key\", \"private_key_fn\", \"service_specific_attribute\", \"service_specific_id\"]\n fieldsets = [\n (None, {'fields': fieldList, 'classes': ['suit-tab suit-tab-general']})]\n inlines = [ServiceAttrAsTabInline, SliceInline, ProviderTenantInline,\n SubscriberTenantInline, ServicePrivilegeInline]\n readonly_fields = ('backend_status_text', )\n\n user_readonly_fields = fieldList\n\n suit_form_tabs = (('general', 'Service Details'),\n ('slices', 'Slices'),\n ('serviceattrs', 'Additional Attributes'),\n ('servicetenants', 'Tenancy'),\n ('serviceprivileges', 'Privileges')\n )", "metadata": "root.ServiceAdmin", "header": "['module', '___EOS___']", "index": 1032 }, { "content": "class SiteNodeInline(XOSTabularInline):\n model = Node\n fields = ['name', 'site_deployment']\n extra = 0\n suit_classes = 'suit-tab suit-tab-nodes'\n", "metadata": "root.SiteNodeInline", "header": "['module', '___EOS___']", "index": 1054 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n # only display site deployments associated with this site\n if db_field.name == 'site_deployment':\n kwargs['queryset'] = SiteDeployment.objects.filter(\n site__id=int(request.path.split('/')[-2]))\n\n return super(SiteNodeInline, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SiteNodeInline.formfield_for_foreignkey", "header": "['class', 'SiteNodeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 1060 }, { "content": "class SiteAdmin(XOSBaseAdmin):\n #fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\n fieldList = ['backend_status_text', 'name', 'site_url', 'enabled',\n 'login_base', 'location', 'is_public', 'hosts_nodes', 'hosts_users']\n fieldsets = [\n (None, {'fields': fieldList, 'classes': [\n 'suit-tab suit-tab-general']}),\n #('Deployment Networks', {'fields': ['deployments'], 'classes':['suit-tab suit-tab-deployments']}),\n ]\n #readonly_fields = ['backend_status_text', 'accountLink']\n readonly_fields = ['backend_status_text']\n\n #user_readonly_fields = ['name', 'deployments','site_url', 'enabled', 'is_public', 'login_base', 'accountLink']\n user_readonly_fields = ['name', 'deployments', 'site_url',\n 'enabled', 'is_public', 'login_base', 'hosts_nodes', 'hosts_users']\n\n list_display = ('backend_status_icon', 'name',\n 'login_base', 'site_url', 'enabled')\n list_display_links = ('backend_status_icon', 'name', )\n filter_horizontal = ('deployments',)\n inlines = [SliceInline, UserInline, TagInline,\n SitePrivilegeInline, SiteNodeInline]\n admin_inlines = [ControllerSiteInline]\n search_fields = ['name']\n\n\n\n\n accountLink.allow_tags = True\n accountLink.short_description = \"Billing\"\n\n", "metadata": "root.SiteAdmin", "header": "['module', '___EOS___']", "index": 1069 }, { "content": " @property\n def suit_form_tabs(self):\n tabs = [('general', 'Site Details'),\n ('users', 'Users'),\n ('siteprivileges', 'Privileges'),\n ('slices', 'Slices'),\n ('nodes', 'Nodes'),\n ]\n\n request = getattr(_thread_locals, \"request\", None)\n if request and request.user.is_admin:\n tabs.append(('admin-only', 'Admin-Only'))\n\n return tabs", "metadata": "root.SiteAdmin.suit_form_tabs", "header": "['class', 'SiteAdmin', '(', 'XOSBaseAdmin', ')', ':', '___NEWLINE___', \"#fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\", '___NL___', '___EOS___']", "index": 1094 }, { "content": " def queryset(self, request):\n return Site.select_by_user(request.user)", "metadata": "root.SiteAdmin.queryset", "header": "['class', 'SiteAdmin', '(', 'XOSBaseAdmin', ')', ':', '___NEWLINE___', \"#fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\", '___NL___', '___EOS___']", "index": 1109 }, { "content": " def get_formsets(self, request, obj=None):\n for inline in self.get_inline_instances(request, obj):\n # hide MyInline in the add view\n if obj is None:\n continue\n if isinstance(inline, InstanceInline):\n inline.model.caller = request.user\n yield inline.get_formset(request, obj)", "metadata": "root.SiteAdmin.get_formsets", "header": "['class', 'SiteAdmin', '(', 'XOSBaseAdmin', ')', ':', '___NEWLINE___', \"#fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\", '___NL___', '___EOS___']", "index": 1112 }, { "content": " def accountLink(self, obj):\n link_obj = obj.accounts.all()\n if link_obj:\n reverse_path = \"admin:core_account_change\"\n url = reverse(reverse_path, args=(link_obj[0].id,))\n return \"<a href='%s'>%s</a>\" % (url, \"view billing details\")\n else:\n return \"no billing data for this site\"", "metadata": "root.SiteAdmin.accountLink", "header": "['class', 'SiteAdmin', '(', 'XOSBaseAdmin', ')', ':', '___NEWLINE___', \"#fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\", '___NL___', '___EOS___']", "index": 1121 }, { "content": " def save_model(self, request, obj, form, change):\n # update openstack connection to use this site/tenant\n obj.save_by_user(request.user)", "metadata": "root.SiteAdmin.save_model", "header": "['class', 'SiteAdmin', '(', 'XOSBaseAdmin', ')', ':', '___NEWLINE___', \"#fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\", '___NL___', '___EOS___']", "index": 1132 }, { "content": " def delete_model(self, request, obj):\n obj.delete_by_user(request.user)", "metadata": "root.SiteAdmin.delete_model", "header": "['class', 'SiteAdmin', '(', 'XOSBaseAdmin', ')', ':', '___NEWLINE___', \"#fieldList = ['backend_status_text', 'name', 'site_url', 'enabled', 'is_public', 'login_base', 'accountLink','location']\", '___NL___', '___EOS___']", "index": 1136 }, { "content": "class SitePrivilegeAdmin(XOSBaseAdmin):\n fieldList = ['backend_status_text', 'user', 'site', 'role']\n fieldsets = [\n (None, {'fields': fieldList, 'classes': ['collapse']})\n ]\n readonly_fields = ('backend_status_text', )\n list_display = ('backend_status_icon', 'user', 'site', 'role')\n list_display_links = list_display\n user_readonly_fields = fieldList\n user_readonly_inlines = []\n\n", "metadata": "root.SitePrivilegeAdmin", "header": "['module', '___EOS___']", "index": 1140 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'site':\n if not request.user.is_admin:\n # only show sites where user is an admin or pi\n sites = set()\n for site_privilege in SitePrivilege.objects.filer(user=request.user):\n if site_privilege.role.role_type in ['admin', 'pi']:\n sites.add(site_privilege.site)\n kwargs['queryset'] = Site.objects.filter(site__in=list(sites))\n\n if db_field.name == 'user':\n if not request.user.is_admin:\n # only show users from sites where caller has admin or pi role\n roles = Role.objects.filter(role_type__in=['admin', 'pi'])\n site_privileges = SitePrivilege.objects.filter(\n user=request.user).filter(role__in=roles)\n sites = [site_privilege.site for site_privilege in site_privileges]\n site_privileges = SitePrivilege.objects.filter(site__in=sites)\n emails = [\n site_privilege.user.email for site_privilege in site_privileges]\n users = User.objects.filter(email__in=emails)\n kwargs['queryset'] = users\n\n return super(SitePrivilegeAdmin, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SitePrivilegeAdmin.formfield_for_foreignkey", "header": "['class', 'SitePrivilegeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1151 }, { "content": " def queryset(self, request):\n # admins can see all privileges. Users can only see privileges at sites\n # where they have the admin role or pi role.\n qs = super(SitePrivilegeAdmin, self).queryset(request)\n # if not request.user.is_admin:\n # roles = Role.objects.filter(role_type__in=['admin', 'pi'])\n # site_privileges = SitePrivilege.objects.filter(user=request.user).filter(role__in=roles)\n # login_bases = [site_privilege.site.login_base for site_privilege in site_privileges]\n # sites = Site.objects.filter(login_base__in=login_bases)\n # qs = qs.filter(site__in=sites)\n return qs", "metadata": "root.SitePrivilegeAdmin.queryset", "header": "['class', 'SitePrivilegeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1176 }, { "content": "class SliceForm(forms.ModelForm):\n\n class Meta:\n model = Slice\n widgets = {\n 'service': LinkedSelect\n }\n", "metadata": "root.SliceForm", "header": "['module', '___EOS___']", "index": 1189 }, { "content": " def clean(self):\n cleaned_data = super(SliceForm, self).clean()\n name = cleaned_data.get('name')\n site = cleaned_data.get('site')\n slice_id = self.instance.id\n if not site and slice_id:\n site = Slice.objects.get(id=slice_id).site\n if (not isinstance(site, Site)):\n # previous code indicates 'site' could be a site_id and not a site?\n site = Slice.objects.get(id=site.id)\n if not name.startswith(site.login_base):\n raise forms.ValidationError(\n 'slice name must begin with %s' % site.login_base)\n return cleaned_data", "metadata": "root.SliceForm.clean", "header": "['class', 'SliceForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1197 }, { "content": "class ControllerSliceInline(XOSTabularInline):\n model = ControllerSlice\n extra = 0\n verbose_name = \"Controller Slices\"\n verbose_name_plural = \"Controller Slices\"\n suit_classes = 'suit-tab suit-tab-admin-only'\n fields = ['backend_status_icon', 'controller', 'tenant_id']\n readonly_fields = ('backend_status_icon', 'controller')", "metadata": "root.ControllerSliceInline", "header": "['module', '___EOS___']", "index": 1213 }, { "content": "class SliceAdmin(XOSBaseAdmin):\n form = SliceForm\n fieldList = ['backend_status_text', 'site', 'name', 'serviceClass', 'enabled',\n 'description', 'service', 'slice_url', 'max_instances', \"default_isolation\", \"network\"]\n fieldsets = [('Slice Details', {'fields': fieldList, 'classes': [\n 'suit-tab suit-tab-general']}), ]\n readonly_fields = ('backend_status_text', )\n list_display = ('backend_status_icon', 'name', 'site',\n 'serviceClass', 'slice_url', 'max_instances')\n list_display_links = ('backend_status_icon', 'name', )\n normal_inlines = [SlicePrivilegeInline, InstanceInline,\n TagInline, ReservationInline, SliceNetworkInline]\n inlines = normal_inlines\n admin_inlines = [ControllerSliceInline]\n suit_form_includes = (('slice_instance_tab.html', 'bottom', 'instances'),)\n\n user_readonly_fields = fieldList\n\n\n\n\n\n\n\n\n", "metadata": "root.SliceAdmin", "header": "['module', '___EOS___']", "index": 1223 }, { "content": " @property\n def suit_form_tabs(self):\n tabs = [('general', 'Slice Details'),\n ('slicenetworks', 'Networks'),\n ('sliceprivileges', 'Privileges'),\n ('instances', 'Instances'),\n #('reservations','Reservations'),\n ('tags', 'Tags'),\n ]\n\n request = getattr(_thread_locals, \"request\", None)\n if request and request.user.is_admin:\n tabs.append(('admin-only', 'Admin-Only'))\n\n return tabs", "metadata": "root.SliceAdmin.suit_form_tabs", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1241 }, { "content": " def add_view(self, request, form_url='', extra_context=None):\n # Ugly hack for CORD\n self.inlines = self.normal_inlines\n # revert to default read-only fields\n self.readonly_fields = ('backend_status_text',)\n return super(SliceAdmin, self).add_view(request, form_url, extra_context=extra_context)", "metadata": "root.SliceAdmin.add_view", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1257 }, { "content": " def change_view(self, request, object_id, form_url='', extra_context=None):\n # cannot change the site of an existing slice so make the site field\n # read only\n if object_id:\n self.readonly_fields = ('backend_status_text', 'site')\n\n return super(SliceAdmin, self).change_view(request, object_id, form_url)", "metadata": "root.SliceAdmin.change_view", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1264 }, { "content": " def render_change_form(self, request, context, add=False, change=False, form_url='', obj=None):\n deployment_nodes = []\n for node in Node.objects.all():\n deployment_nodes.append(\n (node.site_deployment.deployment.id, node.id, node.name))\n\n deployment_flavors = []\n for flavor in Flavor.objects.all():\n for deployment in flavor.deployments.all():\n deployment_flavors.append(\n (deployment.id, flavor.id, flavor.name))\n\n deployment_images = []\n for image in Image.objects.all():\n for deployment_image in image.imagedeployments.all():\n deployment_images.append(\n (deployment_image.deployment.id, image.id, image.name))\n\n site_login_bases = []\n for site in Site.objects.all():\n site_login_bases.append((site.id, site.login_base))\n\n context[\"deployment_nodes\"] = deployment_nodes\n context[\"deployment_flavors\"] = deployment_flavors\n context[\"deployment_images\"] = deployment_images\n context[\"site_login_bases\"] = site_login_bases\n return super(SliceAdmin, self).render_change_form(request, context, add, change, form_url, obj)", "metadata": "root.SliceAdmin.render_change_form", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1272 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'site':\n kwargs['queryset'] = Site.select_by_user(\n request.user).filter(hosts_users=True)\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"update_slice_prefix(this, $($(this).closest('fieldset')[0]).find('.field-name input')[0].id)\"})\n\n return super(SliceAdmin, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SliceAdmin.formfield_for_foreignkey", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1300 }, { "content": " def queryset(self, request):\n # admins can see all keys. Users can only see slices they belong to.\n return Slice.select_by_user(request.user)", "metadata": "root.SliceAdmin.queryset", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1309 }, { "content": " def get_formsets(self, request, obj=None):\n for inline in self.get_inline_instances(request, obj):\n # hide MyInline in the add view\n if obj is None:\n continue\n if isinstance(inline, InstanceInline):\n inline.model.caller = request.user\n yield inline.get_formset(request, obj)", "metadata": "root.SliceAdmin.get_formsets", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1313 }, { "content": " def add_extra_context(self, request, extra_context):\n super(SliceAdmin, self).add_extra_context(request, extra_context)\n # set context[\"slice_id\"] to the PK passed in the URL to this view\n if len(request.resolver_match.args) > 0:\n extra_context[\"slice_id\"] = request.resolver_match.args[0]", "metadata": "root.SliceAdmin.add_extra_context", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1322 }, { "content": " def UNUSED_get_inline_instances(self, request, obj=None):\n # HACK for CORD to do something special on vcpe slice page\n # this was a good idea, but failed miserably, as something still\n # expects there to be a deployment field.\n # XXX this approach is better than clobbering self.inlines, so\n # try to make this work post-demo.\n if (obj is not None) and (obj.name == \"mysite_vcpe\"):\n cord_vcpe_inlines = [SlicePrivilegeInline, CordInstanceInline,\n TagInline, ReservationInline, SliceNetworkInline]\n\n inlines = []\n for inline_class in cord_vcpe_inlines:\n inlines.append(inline_class(self.model, self.admin_site))\n else:\n inlines = super(SliceAdmin, self).get_inline_instances(\n request, obj)\n\n return inlines", "metadata": "root.SliceAdmin.UNUSED_get_inline_instances", "header": "['class', 'SliceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1328 }, { "content": "class SlicePrivilegeAdmin(XOSBaseAdmin):\n fieldsets = [\n (None, {'fields': ['backend_status_text', 'user', 'slice', 'role']})\n ]\n readonly_fields = ('backend_status_text', )\n list_display = ('backend_status_icon', 'user', 'slice', 'role')\n list_display_links = list_display\n\n user_readonly_fields = ['user', 'slice', 'role']\n user_readonly_inlines = []\n\n\n\n", "metadata": "root.SlicePrivilegeAdmin", "header": "['module', '___EOS___']", "index": 1348 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'slice':\n kwargs['queryset'] = Slice.select_by_user(request.user)\n\n if db_field.name == 'user':\n kwargs['queryset'] = User.select_by_user(request.user)\n\n return super(SlicePrivilegeAdmin, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.SlicePrivilegeAdmin.formfield_for_foreignkey", "header": "['class', 'SlicePrivilegeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1359 }, { "content": " def queryset(self, request):\n # admins can see all memberships. Users can only see memberships of\n # slices where they have the admin role.\n return SlicePrivilege.select_by_user(request.user)", "metadata": "root.SlicePrivilegeAdmin.queryset", "header": "['class', 'SlicePrivilegeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1368 }, { "content": " def save_model(self, request, obj, form, change):\n # update openstack connection to use this site/tenant\n auth = request.session.get('auth', {})\n auth['tenant'] = obj.slice.slicename\n obj.os_manager = OpenStackManager(auth=auth, caller=request.user)\n obj.save()", "metadata": "root.SlicePrivilegeAdmin.save_model", "header": "['class', 'SlicePrivilegeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1373 }, { "content": " def delete_model(self, request, obj):\n # update openstack connection to use this site/tenant\n auth = request.session.get('auth', {})\n auth['tenant'] = obj.slice.slicename\n obj.os_manager = OpenStackManager(auth=auth, caller=request.user)\n obj.delete()", "metadata": "root.SlicePrivilegeAdmin.delete_model", "header": "['class', 'SlicePrivilegeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1380 }, { "content": "class ImageAdmin(XOSBaseAdmin):\n\n fieldsets = [('Image Details',\n {'fields': ['backend_status_text', 'name', 'kind', 'disk_format', 'container_format', 'tag', 'path'],\n 'classes': ['suit-tab suit-tab-general']})\n ]\n readonly_fields = ('backend_status_text', )\n\n suit_form_tabs = (('general', 'Image Details'), ('instances', 'Instances'),\n ('imagedeployments', 'Deployments'), ('admin-only', 'Admin-Only'))\n\n inlines = [InstanceInline, ControllerImagesInline]\n\n user_readonly_fields = ['name', 'disk_format',\n 'container_format', 'tag', 'path']\n\n list_display = ['backend_status_icon', 'name', 'kind']\n list_display_links = ('backend_status_icon', 'name', )", "metadata": "root.ImageAdmin", "header": "['module', '___EOS___']", "index": 1388 }, { "content": "class NodeForm(forms.ModelForm):\n nodelabels = forms.ModelMultipleChoiceField(\n queryset=NodeLabel.objects.all(),\n required=False,\n help_text=\"Select which labels apply to this node\",\n widget=FilteredSelectMultiple(\n verbose_name=('Labels'), is_stacked=False\n )\n )\n\n class Meta:\n model = Node\n widgets = {\n 'site': LinkedSelect,\n 'deployment': LinkedSelect\n }\n\n", "metadata": "root.NodeForm", "header": "['module', '___EOS___']", "index": 1408 }, { "content": " def __init__(self, *args, **kwargs):\n request = kwargs.pop('request', None)\n super(NodeForm, self).__init__(*args, **kwargs)\n\n if self.instance and self.instance.pk:\n self.fields['nodelabels'].initial = self.instance.nodelabels.all()", "metadata": "root.NodeForm.__init__", "header": "['class', 'NodeForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1425 }, { "content": " def save(self, commit=True):\n node = super(NodeForm, self).save(commit=False)\n\n node.nodelabels = self.cleaned_data['nodelabels']\n\n if commit:\n node.save()\n\n return node", "metadata": "root.NodeForm.save", "header": "['class', 'NodeForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1432 }, { "content": "class NodeLabelAdmin(XOSBaseAdmin):\n list_display = ('name',)\n list_display_links = ('name', )\n\n fields = ('name', )", "metadata": "root.NodeLabelAdmin", "header": "['module', '___EOS___']", "index": 1443 }, { "content": "class NodeAdmin(XOSBaseAdmin):\n form = NodeForm\n list_display = ('backend_status_icon', 'name', 'site_deployment')\n list_display_links = ('backend_status_icon', 'name', )\n list_filter = ('site_deployment',)\n\n inlines = [TagInline, InstanceInline]\n fieldsets = [('Node Details', {'fields': ['backend_status_text', 'name', 'site_deployment'], 'classes':['suit-tab suit-tab-details']}),\n ('Labels', {'fields': ['nodelabels'], 'classes':['suit-tab suit-tab-labels']})]\n readonly_fields = ('backend_status_text', )\n\n user_readonly_fields = ['name', 'site_deployment']\n user_readonly_inlines = [TagInline, InstanceInline]\n\n suit_form_tabs = (('details', 'Node Details'), ('instances',\n 'Instances'), ('labels', 'Labels'), ('tags', 'Tags'))\n", "metadata": "root.NodeAdmin", "header": "['module', '___EOS___']", "index": 1450 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'site':\n kwargs['queryset'] = Site.select_by_user(\n request.user).filter(hosts_nodes=True)\n\n field = super(NodeAdmin, self).formfield_for_foreignkey(\n db_field, request, **kwargs)\n\n return field", "metadata": "root.NodeAdmin.formfield_for_foreignkey", "header": "['class', 'NodeAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1467 }, { "content": "class InstanceForm(forms.ModelForm):\n\n class Meta:\n model = Instance\n ip = forms.CharField(widget=PlainTextWidget)\n instance_name = forms.CharField(widget=PlainTextWidget)\n widgets = {\n 'ip': PlainTextWidget(),\n 'instance_name': PlainTextWidget(),\n 'instance_id': PlainTextWidget(),\n 'slice': LinkedSelect,\n 'deployment': LinkedSelect,\n 'node': LinkedSelect,\n 'image': LinkedSelect\n }", "metadata": "root.InstanceForm", "header": "['module', '___EOS___']", "index": 1478 }, { "content": "class TagAdmin(XOSBaseAdmin):\n list_display = ['backend_status_icon', 'service',\n 'name', 'value', 'content_type', 'content_object', ]\n list_display_links = list_display\n user_readonly_fields = ['service', 'name',\n 'value', 'content_type', 'content_object', ]\n user_readonly_inlines = []", "metadata": "root.TagAdmin", "header": "['module', '___EOS___']", "index": 1495 }, { "content": "class InstancePortInline(XOSTabularInline):\n fields = ['backend_status_icon', 'network', 'instance', 'ip', 'mac']\n readonly_fields = (\"backend_status_icon\", \"ip\", \"mac\")\n model = Port\n #selflink_fieldname = \"network\"\n extra = 0\n verbose_name_plural = \"Ports\"\n verbose_name = \"Port\"\n suit_classes = 'suit-tab suit-tab-ports'", "metadata": "root.InstancePortInline", "header": "['module', '___EOS___']", "index": 1504 }, { "content": "class InstanceAdmin(XOSBaseAdmin):\n form = InstanceForm\n fieldsets = [\n ('Instance Details', {'fields': ['backend_status_text', 'slice', 'deployment', 'isolation', 'flavor', 'image', 'node',\n 'parent', 'all_ips_string', 'instance_id', 'instance_name', 'ssh_command', ], 'classes': ['suit-tab suit-tab-general'], }),\n ('Container Settings', {'fields': ['volumes'], 'classes': [\n 'suit-tab suit-tab-container'], }),\n ]\n readonly_fields = ('backend_status_text', 'ssh_command', 'all_ips_string')\n list_display = ['backend_status_icon', 'all_ips_string', 'instance_id',\n 'instance_name', 'isolation', 'slice', 'flavor', 'image', 'node', 'deployment']\n list_display_links = ('backend_status_icon',\n 'all_ips_string', 'instance_id', )\n\n suit_form_tabs = (('general', 'Instance Details'), ('ports', 'Ports'),\n ('container', 'Container Settings'), ('tags', 'Tags'))\n\n inlines = [TagInline, InstancePortInline]\n\n user_readonly_fields = ['slice', 'deployment',\n 'node', 'ip', 'instance_name', 'flavor', 'image']\n\n\n\n\n\n\n\n\n # def save_model(self, request, obj, form, change):\n # # update openstack connection to use this site/tenant\n # auth = request.session.get('auth', {})\n # auth['tenant'] = obj.slice.name\n # obj.os_manager = OpenStackManager(auth=auth, caller=request.user)\n # obj.creator = request.user\n # obj.save()\n\n # def delete_model(self, request, obj):\n # # update openstack connection to use this site/tenant\n # auth = request.session.get('auth', {})\n # auth['tenant'] = obj.slice.name\n # obj.os_manager = OpenStackManager(auth=auth, caller=request.user)\n # obj.delete()", "metadata": "root.InstanceAdmin", "header": "['module', '___EOS___']", "index": 1515 }, { "content": " def ssh_command(self, obj):\n ssh_command = obj.get_ssh_command()\n if ssh_command:\n return ssh_command\n else:\n return \"(not available)\"", "metadata": "root.InstanceAdmin.ssh_command", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1537 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'slice':\n kwargs['queryset'] = Slice.select_by_user(request.user)\n\n return super(InstanceAdmin, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.InstanceAdmin.formfield_for_foreignkey", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1544 }, { "content": " def queryset(self, request):\n # admins can see all instances. Users can only see instances of\n # the slices they belong to.\n return Instance.select_by_user(request.user)", "metadata": "root.InstanceAdmin.queryset", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1550 }, { "content": " def add_view(self, request, form_url='', extra_context=None):\n self.readonly_fields = ('backend_status_text',\n 'ssh_command', 'all_ips_string')\n return super(InstanceAdmin, self).add_view(request, form_url, extra_context)", "metadata": "root.InstanceAdmin.add_view", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1555 }, { "content": " def change_view(self, request, object_id, extra_context=None):\n self.readonly_fields = ('backend_status_text', 'ssh_command',\n 'all_ips_string', 'deployment', 'slice', 'flavor', 'image', 'node')\n # for XOSAdminMixin.change_view's user_readonly_fields switching code\n self.readonly_save = self.readonly_fields\n return super(InstanceAdmin, self).change_view(request, object_id, extra_context)", "metadata": "root.InstanceAdmin.change_view", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1560 }, { "content": " def render_change_form(self, request, context, add=False, change=False, form_url='', obj=None):\n deployment_nodes = []\n# for node in Node.objects.all():\n for node in Node.objects.order_by(\"name\"):\n deployment_nodes.append(\n (node.site_deployment.deployment.id, node.id, node.name))\n\n deployment_flavors = []\n for flavor in Flavor.objects.all():\n for deployment in flavor.deployments.all():\n deployment_flavors.append(\n (deployment.id, flavor.id, flavor.name))\n\n deployment_images = []\n for image in Image.objects.all():\n for deployment_image in image.imagedeployments.all():\n deployment_images.append(\n (deployment_image.deployment.id, image.id, image.name))\n\n site_login_bases = []\n for site in Site.objects.all():\n site_login_bases.append((site.id, site.login_base))\n\n context[\"deployment_nodes\"] = deployment_nodes\n context[\"deployment_flavors\"] = deployment_flavors\n context[\"deployment_images\"] = deployment_images\n context[\"site_login_bases\"] = site_login_bases\n return super(InstanceAdmin, self).render_change_form(request, context, add, change, form_url, obj)", "metadata": "root.InstanceAdmin.render_change_form", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1567 }, { "content": " def formfield_for_foreignkey(self, db_field, request=None, **kwargs):\n if db_field.name == 'deployment':\n kwargs['queryset'] = Deployment.select_by_acl(request.user).filter(\n sitedeployments__nodes__isnull=False).distinct()\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"instance_deployment_changed(this);\"})\n if db_field.name == 'flavor':\n kwargs['widget'] = forms.Select(\n attrs={'onChange': \"instance_flavor_changed(this);\"})\n\n field = super(InstanceAdmin, self).formfield_for_foreignkey(\n db_field, request, **kwargs)\n\n return field", "metadata": "root.InstanceAdmin.formfield_for_foreignkey", "header": "['class', 'InstanceAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1596 }, { "content": "class UserCreationForm(forms.ModelForm):\n \"\"\"A form for creating new users. Includes all the required\n fields, plus a repeated password.\"\"\"\n password1 = forms.CharField(label='Password', widget=forms.PasswordInput)\n password2 = forms.CharField(\n label='Password confirmation', widget=forms.PasswordInput)\n\n class Meta:\n model = User\n fields = ('email', 'firstname', 'lastname', 'phone', 'public_key')\n\n", "metadata": "root.UserCreationForm", "header": "['module', '___EOS___']", "index": 1660 }, { "content": " def clean_password2(self):\n # Check that the two password entries match\n password1 = self.cleaned_data.get(\"password1\")\n password2 = self.cleaned_data.get(\"password2\")\n if password1 and password2 and password1 != password2:\n raise forms.ValidationError(\"Passwords don't match\")\n return password2", "metadata": "root.UserCreationForm.clean_password2", "header": "['class', 'UserCreationForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1671 }, { "content": " def save(self, commit=True):\n # Save the provided password in hashed format\n user = super(UserCreationForm, self).save(commit=False)\n user.password = self.cleaned_data[\"password1\"]\n # user.set_password(self.cleaned_data[\"password1\"])\n if commit:\n user.save()\n return user", "metadata": "root.UserCreationForm.save", "header": "['class', 'UserCreationForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1679 }, { "content": "class UserChangeForm(forms.ModelForm):\n \"\"\"A form for updating users. Includes all the fields on\n the user, but replaces the password field with admin's\n password hash display field.\n \"\"\"\n password = ReadOnlyPasswordHashField(label='Password',\n help_text='<a href=\\\"password/\\\">Change Password</a>.')\n\n PROFILE_CHOICES = ((None, '------'), ('regular',\n 'Regular user'), ('cp', 'Content Provider'))\n profile = forms.ChoiceField(\n choices=PROFILE_CHOICES, required=False, label=\"Quick Profile\")\n\n class Meta:\n model = User\n widgets = {'public_key': UploadTextareaWidget, }\n\n", "metadata": "root.UserChangeForm", "header": "['module', '___EOS___']", "index": 1689 }, { "content": " def clean_password(self):\n # Regardless of what the user provides, return the initial value.\n # This is done here, rather than on the field, because the\n # field does not have access to the initial value\n return self.initial[\"password\"]", "metadata": "root.UserChangeForm.clean_password", "header": "['class', 'UserChangeForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1706 }, { "content": " def save(self, *args, **kwargs):\n if self.cleaned_data['profile']:\n self.instance.apply_profile(self.cleaned_data['profile'])\n\n return super(UserChangeForm, self).save(*args, **kwargs)", "metadata": "root.UserChangeForm.save", "header": "['class', 'UserChangeForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1712 }, { "content": "class UserDashboardViewInline(XOSTabularInline):\n model = UserDashboardView\n extra = 0\n suit_classes = 'suit-tab suit-tab-dashboards'\n fields = ['user', 'dashboardView', 'order']", "metadata": "root.UserDashboardViewInline", "header": "['module', '___EOS___']", "index": 1719 }, { "content": "class ControllerUserInline(XOSTabularInline):\n model = ControllerUser\n extra = 0\n suit_classes = 'suit-tab suit-tab-admin-only'\n fields = ['controller', 'user', 'kuser_id']", "metadata": "root.ControllerUserInline", "header": "['module', '___EOS___']", "index": 1726 }, { "content": "class UserAdmin(XOSAdminMixin, UserAdmin):\n # Note: Make sure XOSAdminMixin is listed before\n # admin.ModelAdmin in the class declaration.\n\n class Meta:\n app_label = \"core\"\n\n # The forms to add and change user instances\n form = UserChangeForm\n add_form = UserCreationForm\n\n # The fields to be used in displaying the User model.\n # These override the definitions on the base UserAdmin\n # that reference specific fields on auth.User.\n list_display = ('backend_status_icon', 'email',\n 'firstname', 'lastname', 'site', 'last_login')\n list_display_links = (\"email\",)\n list_filter = ('site',)\n inlines = [SlicePrivilegeInline, SitePrivilegeInline]\n admin_inlines = [ControllerUserInline]\n fieldListLoginDetails = ['backend_status_text', 'email', 'site', 'password', 'is_active',\n 'is_readonly', 'is_admin', 'is_appuser', 'public_key', 'login_page', 'profile']\n fieldListContactInfo = ['firstname', 'lastname', 'phone', 'timezone']\n\n fieldsets = (\n ('Login Details', {'fields': ['backend_status_text', 'email', 'site', 'password', 'is_active',\n 'is_readonly', 'is_admin', 'is_appuser', 'public_key'], 'classes': ['suit-tab suit-tab-general']}),\n ('Contact Information', {'fields': (\n 'firstname', 'lastname', 'phone', 'timezone'), 'classes': ['suit-tab suit-tab-contact']}),\n #('Important dates', {'fields': ('last_login',)}),\n )\n add_fieldsets = (\n (None, {\n 'classes': ('wide',),\n 'fields': ('site', 'email', 'firstname', 'lastname', 'is_admin', 'is_readonly', 'is_appuser', 'phone', 'public_key', 'password1', 'password2')},\n ),\n )\n readonly_fields = ('backend_status_text', )\n search_fields = ('email',)\n ordering = ('email',)\n filter_horizontal = ()\n\n user_readonly_fields = fieldListLoginDetails + fieldListContactInfo\n\n\n\n", "metadata": "root.UserAdmin", "header": "['module', '___EOS___']", "index": 1733 }, { "content": " @property\n def suit_form_tabs(self):\n if getattr(_thread_locals, \"obj\", None) is None:\n return []\n else:\n tabs = [('general', 'Login Details'),\n ('contact', 'Contact Information'),\n ('sliceprivileges', 'Slice Privileges'),\n ('siteprivileges', 'Site Privileges')]\n\n request = getattr(_thread_locals, \"request\", None)\n if request and request.user.is_admin:\n tabs.append(('admin-only', 'Admin-Only'))\n\n return tabs", "metadata": "root.UserAdmin.suit_form_tabs", "header": "['class', 'UserAdmin', '(', 'XOSAdminMixin', ',', 'UserAdmin', ')', ':', '___NEWLINE___', '# Note: Make sure XOSAdminMixin is listed before', '___NL___', '# admin.ModelAdmin in the class declaration.', '___NL___', '___EOS___']", "index": 1777 }, { "content": " def formfield_for_foreignkey(self, db_field, request, **kwargs):\n if db_field.name == 'site':\n kwargs['queryset'] = Site.select_by_user(\n request.user).filter(hosts_users=True)\n\n return super(UserAdmin, self).formfield_for_foreignkey(db_field, request, **kwargs)", "metadata": "root.UserAdmin.formfield_for_foreignkey", "header": "['class', 'UserAdmin', '(', 'XOSAdminMixin', ',', 'UserAdmin', ')', ':', '___NEWLINE___', '# Note: Make sure XOSAdminMixin is listed before', '___NL___', '# admin.ModelAdmin in the class declaration.', '___NL___', '___EOS___']", "index": 1793 }, { "content": " def queryset(self, request):\n return User.select_by_user(request.user)", "metadata": "root.UserAdmin.queryset", "header": "['class', 'UserAdmin', '(', 'XOSAdminMixin', ',', 'UserAdmin', ')', ':', '___NEWLINE___', '# Note: Make sure XOSAdminMixin is listed before', '___NL___', '# admin.ModelAdmin in the class declaration.', '___NL___', '___EOS___']", "index": 1800 }, { "content": " def get_form(self, request, obj=None, **kwargs):\n # copy login details list\n login_details_fields = list(self.fieldListLoginDetails)\n if not request.user.is_admin:\n # only admins can see 'is_admin' and 'is_readonly' fields\n if 'is_admin' in login_details_fields:\n login_details_fields.remove('is_admin')\n if 'is_readonly' in login_details_fields:\n login_details_fields.remove('is_readonly')\n if 'is_appuser' in login_details_fields:\n login_details_fields.remove('is_admin')\n if 'profile' in login_details_fields:\n login_details_fields.remove('profile')\n # if len(request.user.siteprivileges.filter(role__role = 'pi')) > 0:\n # only admins and pis can change a user's site\n # self.readonly_fields = ('backend_status_text', 'site')\n self.fieldsets = (\n ('Login Details', {'fields': login_details_fields,\n 'classes': ['suit-tab suit-tab-general']}),\n ('Contact Information', {\n 'fields': self.fieldListContactInfo, 'classes': ['suit-tab suit-tab-contact']}),\n )\n return super(UserAdmin, self).get_form(request, obj, **kwargs)", "metadata": "root.UserAdmin.get_form", "header": "['class', 'UserAdmin', '(', 'XOSAdminMixin', ',', 'UserAdmin', ')', ':', '___NEWLINE___', '# Note: Make sure XOSAdminMixin is listed before', '___NL___', '# admin.ModelAdmin in the class declaration.', '___NL___', '___EOS___']", "index": 1803 }, { "content": "class ControllerDashboardViewInline(XOSTabularInline):\n model = ControllerDashboardView\n extra = 0\n fields = [\"controller\", \"url\"]\n suit_classes = 'suit-tab suit-tab-controllers'", "metadata": "root.ControllerDashboardViewInline", "header": "['module', '___EOS___']", "index": 1828 }, { "content": "class DashboardViewAdmin(XOSBaseAdmin):\n fieldsets = [('Dashboard View Details',\n {'fields': ['backend_status_text', 'name', 'url', 'enabled', 'deployments'],\n 'classes': ['suit-tab suit-tab-general']})\n ]\n list_display = [\"name\", \"enabled\", \"url\"]\n readonly_fields = ('backend_status_text', )\n inlines = [ControllerDashboardViewInline]\n\n suit_form_tabs = (('general', 'Dashboard View Details'),\n ('controllers', 'Per-controller Dashboard Details'))", "metadata": "root.DashboardViewAdmin", "header": "['module', '___EOS___']", "index": 1835 }, { "content": "class ServiceResourceInline(XOSTabularInline):\n model = ServiceResource\n extra = 0", "metadata": "root.ServiceResourceInline", "header": "['module', '___EOS___']", "index": 1848 }, { "content": "class ServiceClassAdmin(XOSBaseAdmin):\n list_display = ('backend_status_icon', 'name',\n 'commitment', 'membershipFee')\n list_display_links = ('backend_status_icon', 'name', )\n inlines = [ServiceResourceInline]\n\n user_readonly_fields = ['name', 'commitment', 'membershipFee']\n user_readonly_inlines = []", "metadata": "root.ServiceClassAdmin", "header": "['module', '___EOS___']", "index": 1853 }, { "content": "class ReservedResourceInline(XOSTabularInline):\n model = ReservedResource\n extra = 0\n suit_classes = 'suit-tab suit-tab-reservedresources'\n\n", "metadata": "root.ReservedResourceInline", "header": "['module', '___EOS___']", "index": 1863 }, { "content": " def formfield_for_foreignkey(self, db_field, request=None, **kwargs):\n field = super(ReservedResourceInline, self).formfield_for_foreignkey(\n db_field, request, **kwargs)\n\n if db_field.name == 'resource':\n # restrict resources to those that the slice's service class allows\n if request._slice is not None:\n field.queryset = field.queryset.filter(\n serviceClass=request._slice.serviceClass, calendarReservable=True)\n if len(field.queryset) > 0:\n field.initial = field.queryset.all()[0]\n else:\n field.queryset = field.queryset.none()\n elif db_field.name == 'instance':\n # restrict instances to those that belong to the slice\n if request._slice is not None:\n field.queryset = field.queryset.filter(slice=request._slice)\n else:\n field.queryset = field.queryset.none()\n\n return field", "metadata": "root.ReservedResourceInline.formfield_for_foreignkey", "header": "['class', 'ReservedResourceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 1868 }, { "content": " def queryset(self, request):\n return ReservedResource.select_by_user(request.user)", "metadata": "root.ReservedResourceInline.queryset", "header": "['class', 'ReservedResourceInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 1890 }, { "content": "class ReservationChangeForm(forms.ModelForm):\n\n class Meta:\n model = Reservation\n widgets = {\n 'slice': LinkedSelect\n }", "metadata": "root.ReservationChangeForm", "header": "['module', '___EOS___']", "index": 1894 }, { "content": "class ReservationAddForm(forms.ModelForm):\n slice = forms.ModelChoiceField(queryset=Slice.objects.all(), widget=forms.Select(\n attrs={\"onChange\": \"document.getElementById('id_refresh').value=1; submit()\"}))\n refresh = forms.CharField(widget=forms.HiddenInput())\n\n class Media:\n css = {'all': ('xos.css',)} # .field-refresh { display: none; }\n\n\n class Meta:\n model = Reservation\n widgets = {\n 'slice': LinkedSelect\n }", "metadata": "root.ReservationAddForm", "header": "['module', '___EOS___']", "index": 1903 }, { "content": " def clean_slice(self):\n slice = self.cleaned_data.get(\"slice\")\n x = ServiceResource.objects.filter(\n serviceClass=slice.serviceClass, calendarReservable=True)\n if len(x) == 0:\n raise forms.ValidationError(\n \"The slice you selected does not have a service class that allows reservations\")\n return slice", "metadata": "root.ReservationAddForm.clean_slice", "header": "['class', 'ReservationAddForm', '(', 'forms', '.', 'ModelForm', ')', ':', '___EOS___']", "index": 1911 }, { "content": "class ReservationAddRefreshForm(ReservationAddForm):\n \"\"\" This form is displayed when the Reservation Form receives an update\n from the Slice dropdown onChange handler. It doesn't validate the\n data and doesn't save the data. This will cause the form to be\n redrawn.\n \"\"\"\n\n \"\"\" don't validate anything other than slice \"\"\"\n dont_validate_fields = (\"startTime\", \"duration\")\n\n\n \"\"\" don't save anything \"\"\"\n", "metadata": "root.ReservationAddRefreshForm", "header": "['module', '___EOS___']", "index": 1927 }, { "content": " def full_clean(self):\n result = super(ReservationAddForm, self).full_clean()\n\n for fieldname in self.dont_validate_fields:\n if fieldname in self._errors:\n del self._errors[fieldname]\n\n return result", "metadata": "root.ReservationAddRefreshForm.full_clean", "header": "['class', 'ReservationAddRefreshForm', '(', 'ReservationAddForm', ')', ':', '___EOS___']", "index": 1937 }, { "content": " def is_valid(self):\n return False", "metadata": "root.ReservationAddRefreshForm.is_valid", "header": "['class', 'ReservationAddRefreshForm', '(', 'ReservationAddForm', ')', ':', '___EOS___']", "index": 1948 }, { "content": "class ReservationAdmin(XOSBaseAdmin):\n fieldList = ['backend_status_text', 'slice', 'startTime', 'duration']\n fieldsets = [('Reservation Details', {\n 'fields': fieldList, 'classes': ['suit-tab suit-tab-general']})]\n readonly_fields = ('backend_status_text', )\n list_display = ('startTime', 'duration')\n form = ReservationAddForm\n\n suit_form_tabs = (('general', 'Reservation Details'),\n ('reservedresources', 'Reserved Resources'))\n\n inlines = [ReservedResourceInline]\n user_readonly_fields = fieldList\n\n\n\n\n", "metadata": "root.ReservationAdmin", "header": "['module', '___EOS___']", "index": 1952 }, { "content": " def add_view(self, request, form_url='', extra_context=None):\n timezone.activate(request.user.timezone)\n request._refresh = False\n request._slice = None\n if request.method == 'POST':\n # \"refresh\" will be set to \"1\" if the form was submitted due to\n # a change in the Slice dropdown.\n if request.POST.get(\"refresh\", \"1\") == \"1\":\n request._refresh = True\n request.POST[\"refresh\"] = \"0\"\n\n # Keep track of the slice that was selected, so the\n # reservedResource inline can filter items for the slice.\n request._slice = request.POST.get(\"slice\", None)\n if (request._slice is not None):\n request._slice = Slice.objects.get(id=request._slice)\n\n result = super(ReservationAdmin, self).add_view(\n request, form_url, extra_context)\n return result", "metadata": "root.ReservationAdmin.add_view", "header": "['class', 'ReservationAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1966 }, { "content": " def changelist_view(self, request, extra_context=None):\n timezone.activate(request.user.timezone)\n return super(ReservationAdmin, self).changelist_view(request, extra_context)", "metadata": "root.ReservationAdmin.changelist_view", "header": "['class', 'ReservationAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1987 }, { "content": " def get_form(self, request, obj=None, **kwargs):\n request._obj_ = obj\n if obj is not None:\n # For changes, set request._slice to the slice already set in the\n # object.\n request._slice = obj.slice\n self.form = ReservationChangeForm\n else:\n if getattr(request, \"_refresh\", False):\n self.form = ReservationAddRefreshForm\n else:\n self.form = ReservationAddForm\n return super(ReservationAdmin, self).get_form(request, obj, **kwargs)", "metadata": "root.ReservationAdmin.get_form", "header": "['class', 'ReservationAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 1991 }, { "content": " def get_readonly_fields(self, request, obj=None):\n if (obj is not None):\n # Prevent slice from being changed after the reservation has been\n # created.\n return ['slice']\n else:\n return []", "metadata": "root.ReservationAdmin.get_readonly_fields", "header": "['class', 'ReservationAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 2005 }, { "content": " def queryset(self, request):\n return Reservation.select_by_user(request.user)", "metadata": "root.ReservationAdmin.queryset", "header": "['class', 'ReservationAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 2013 }, { "content": "class NetworkParameterTypeAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"name\", )\n list_display_links = ('backend_status_icon', 'name', )\n user_readonly_fields = ['name']\n user_readonly_inlines = []", "metadata": "root.NetworkParameterTypeAdmin", "header": "['module', '___EOS___']", "index": 2017 }, { "content": "class RouterAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"name\", )\n list_display_links = ('backend_status_icon', 'name', )\n user_readonly_fields = ['name']\n user_readonly_inlines = []", "metadata": "root.RouterAdmin", "header": "['module', '___EOS___']", "index": 2024 }, { "content": "class RouterInline(XOSTabularInline):\n model = Router.networks.through\n extra = 0\n verbose_name_plural = \"Routers\"\n verbose_name = \"Router\"\n suit_classes = 'suit-tab suit-tab-routers'", "metadata": "root.RouterInline", "header": "['module', '___EOS___']", "index": 2031 }, { "content": "class NetworkParameterInline(PlStackGenericTabularInline):\n model = NetworkParameter\n extra = 0\n verbose_name_plural = \"Parameters\"\n verbose_name = \"Parameter\"\n suit_classes = 'suit-tab suit-tab-netparams'\n fields = ['backend_status_icon', 'parameter', 'value']\n readonly_fields = ('backend_status_icon', )", "metadata": "root.NetworkParameterInline", "header": "['module', '___EOS___']", "index": 2039 }, { "content": "class NetworkPortInline(XOSTabularInline):\n fields = ['backend_status_icon', 'network', 'instance', 'ip', 'mac']\n readonly_fields = (\"backend_status_icon\", \"ip\", \"mac\")\n model = Port\n #selflink_fieldname = \"instance\"\n extra = 0\n verbose_name_plural = \"Ports\"\n verbose_name = \"Port\"\n suit_classes = 'suit-tab suit-tab-ports'", "metadata": "root.NetworkPortInline", "header": "['module', '___EOS___']", "index": 2049 }, { "content": "class NetworkSlicesInline(XOSTabularInline):\n model = NetworkSlice\n selflink_fieldname = \"slice\"\n extra = 0\n verbose_name_plural = \"Slices\"\n verbose_name = \"Slice\"\n suit_classes = 'suit-tab suit-tab-networkslices'\n fields = ['backend_status_icon', 'network', 'slice']\n readonly_fields = ('backend_status_icon', )", "metadata": "root.NetworkSlicesInline", "header": "['module', '___EOS___']", "index": 2060 }, { "content": "class ControllerNetworkInline(XOSTabularInline):\n model = ControllerNetwork\n extra = 0\n verbose_name_plural = \"Controller Networks\"\n verbose_name = \"Controller Network\"\n suit_classes = 'suit-tab suit-tab-admin-only'\n fields = ['backend_status_icon', 'controller',\n 'net_id', 'subnet_id', 'subnet']\n readonly_fields = ('backend_status_icon', )", "metadata": "root.ControllerNetworkInline", "header": "['module', '___EOS___']", "index": 2071 }, { "content": "class NetworkForm(forms.ModelForm):\n\n class Meta:\n model = Network\n widgets = {\n 'topologyParameters': UploadTextareaWidget,\n 'controllerParameters': UploadTextareaWidget,\n }", "metadata": "root.NetworkForm", "header": "['module', '___EOS___']", "index": 2082 }, { "content": "class NetworkAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"name\", \"subnet\", \"ports\", \"labels\")\n list_display_links = ('backend_status_icon', 'name', )\n readonly_fields = (\"subnet\", )\n inlines = [NetworkParameterInline, NetworkPortInline,\n NetworkSlicesInline, RouterInline]\n admin_inlines = [ControllerNetworkInline]\n\n form = NetworkForm\n\n fieldsets = [\n (None, {'fields': ['backend_status_text', 'name', 'template', 'ports', 'labels',\n 'owner', 'guaranteed_bandwidth', 'permit_all_slices',\n 'permitted_slices', 'network_id', 'router_id', 'subnet_id',\n 'subnet', 'autoconnect'],\n 'classes':['suit-tab suit-tab-general']}),\n (None, {'fields': ['topology_parameters', 'controller_url', 'controller_parameters'],\n 'classes':['suit-tab suit-tab-sdn']}),\n ]\n\n readonly_fields = ('backend_status_text', )\n user_readonly_fields = ['name', 'template', 'ports', 'labels', 'owner', 'guaranteed_bandwidth',\n 'permit_all_slices', 'permitted_slices', 'network_id', 'router_id',\n 'subnet_id', 'subnet', 'autoconnect']\n", "metadata": "root.NetworkAdmin", "header": "['module', '___EOS___']", "index": 2092 }, { "content": " @property\n def suit_form_tabs(self):\n tabs = [('general', 'Network Details'),\n ('sdn', 'SDN Configuration'),\n ('netparams', 'Parameters'),\n ('ports', 'Ports'),\n ('networkslices', 'Slices'),\n ('routers', 'Routers'),\n ]\n\n request = getattr(_thread_locals, \"request\", None)\n if request and request.user.is_admin:\n tabs.append(('admin-only', 'Admin-Only'))\n\n return tabs", "metadata": "root.NetworkAdmin.suit_form_tabs", "header": "['class', 'NetworkAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 2117 }, { "content": "class NetworkTemplateAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"name\",\n \"guaranteed_bandwidth\", \"visibility\")\n list_display_links = ('backend_status_icon', 'name', )\n user_readonly_fields = [\"name\", \"guaranteed_bandwidth\", \"visibility\"]\n user_readonly_inlines = []\n inlines = [NetworkParameterInline, ]\n fieldsets = [\n (None, {'fields': ['name', 'description', 'guaranteed_bandwidth', 'visibility', 'translation', 'access', 'shared_network_name', 'shared_network_id', 'topology_kind', 'controller_kind'],\n 'classes':['suit-tab suit-tab-general']}), ]\n suit_form_tabs = (('general', 'Network Template Details'),\n ('netparams', 'Parameters'))", "metadata": "root.NetworkTemplateAdmin", "header": "['module', '___EOS___']", "index": 2134 }, { "content": "class PortAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"id\", \"ip\")\n list_display_links = ('backend_status_icon', 'id')\n readonly_fields = (\"subnet\", )\n inlines = [NetworkParameterInline]\n\n fieldsets = [\n (None, {'fields': ['backend_status_text', 'network', 'instance', 'ip', 'port_id', 'mac'],\n 'classes':['suit-tab suit-tab-general']}),\n ]\n\n readonly_fields = ('backend_status_text', )\n suit_form_tabs = (('general', 'Port Details'), ('netparams', 'Parameters'))", "metadata": "root.PortAdmin", "header": "['module', '___EOS___']", "index": 2148 }, { "content": "class FlavorAdmin(XOSBaseAdmin):\n list_display = (\"backend_status_icon\", \"name\",\n \"flavor\", \"order\", \"default\")\n list_display_links = (\"backend_status_icon\", \"name\")\n user_readonly_fields = (\"name\", \"flavor\")\n fields = (\"name\", \"description\", \"flavor\", \"order\", \"default\")", "metadata": "root.FlavorAdmin", "header": "['module', '___EOS___']", "index": 2163 }, { "content": "def cache_credentials(sender, user, request, **kwds):\n auth = {'username': request.POST['username'],\n 'password': request.POST['password']}\n request.session['auth'] = auth", "metadata": "root.cache_credentials", "header": "['module', '___EOS___']", "index": 2173 }, { "content": "def dollar_field(fieldName, short_description):\n def newFunc(self, obj):\n try:\n x = \"$ %0.2f\" % float(getattr(obj, fieldName, 0.0))\n except:\n x = getattr(obj, fieldName, 0.0)\n return x\n newFunc.short_description = short_description\n return newFunc", "metadata": "root.dollar_field", "header": "['module', '___EOS___']", "index": 2180 }, { "content": "def right_dollar_field(fieldName, short_description):\n def newFunc(self, obj):\n try:\n #x= '<div align=right style=\"width:6em\">$ %0.2f</div>' % float(getattr(obj, fieldName, 0.0))\n x = '<div align=right>$ %0.2f</div>' % float(\n getattr(obj, fieldName, 0.0))\n except:\n x = getattr(obj, fieldName, 0.0)\n return x\n newFunc.short_description = short_description\n newFunc.allow_tags = True\n return newFunc", "metadata": "root.right_dollar_field", "header": "['module', '___EOS___']", "index": 2191 }, { "content": "class InvoiceChargeInline(XOSTabularInline):\n model = Charge\n extra = 0\n verbose_name_plural = \"Charges\"\n verbose_name = \"Charge\"\n exclude = ['account']\n fields = [\"date\", \"kind\", \"state\", \"object\",\n \"coreHours\", \"dollar_amount\", \"slice\"]\n readonly_fields = [\"date\", \"kind\", \"state\",\n \"object\", \"coreHours\", \"dollar_amount\", \"slice\"]\n can_delete = False\n max_num = 0\n\n dollar_amount = right_dollar_field(\"amount\", \"Amount\")", "metadata": "root.InvoiceChargeInline", "header": "['module', '___EOS___']", "index": 2205 }, { "content": "class InvoiceAdmin(admin.ModelAdmin):\n list_display = (\"date\", \"account\")\n\n inlines = [InvoiceChargeInline]\n\n fields = [\"date\", \"account\", \"dollar_amount\"]\n readonly_fields = [\"date\", \"account\", \"dollar_amount\"]\n\n dollar_amount = dollar_field(\"amount\", \"Amount\")", "metadata": "root.InvoiceAdmin", "header": "['module', '___EOS___']", "index": 2221 }, { "content": "class InvoiceInline(XOSTabularInline):\n model = Invoice\n extra = 0\n verbose_name_plural = \"Invoices\"\n verbose_name = \"Invoice\"\n fields = [\"date\", \"dollar_amount\"]\n readonly_fields = [\"date\", \"dollar_amount\"]\n suit_classes = 'suit-tab suit-tab-accountinvoice'\n can_delete = False\n max_num = 0\n\n dollar_amount = right_dollar_field(\"amount\", \"Amount\")", "metadata": "root.InvoiceInline", "header": "['module', '___EOS___']", "index": 2232 }, { "content": "class PendingChargeInline(XOSTabularInline):\n model = Charge\n extra = 0\n verbose_name_plural = \"Charges\"\n verbose_name = \"Charge\"\n exclude = [\"invoice\"]\n fields = [\"date\", \"kind\", \"state\", \"object\",\n \"coreHours\", \"dollar_amount\", \"slice\"]\n readonly_fields = [\"date\", \"kind\", \"state\",\n \"object\", \"coreHours\", \"dollar_amount\", \"slice\"]\n suit_classes = 'suit-tab suit-tab-accountpendingcharges'\n can_delete = False\n max_num = 0\n\n\n dollar_amount = right_dollar_field(\"amount\", \"Amount\")", "metadata": "root.PendingChargeInline", "header": "['module', '___EOS___']", "index": 2246 }, { "content": " def queryset(self, request):\n qs = super(PendingChargeInline, self).queryset(request)\n qs = qs.filter(state=\"pending\")\n return qs", "metadata": "root.PendingChargeInline.queryset", "header": "['class', 'PendingChargeInline', '(', 'XOSTabularInline', ')', ':', '___EOS___']", "index": 2260 }, { "content": "class PaymentInline(XOSTabularInline):\n model = Payment\n extra = 1\n verbose_name_plural = \"Payments\"\n verbose_name = \"Payment\"\n fields = [\"date\", \"dollar_amount\"]\n readonly_fields = [\"date\", \"dollar_amount\"]\n suit_classes = 'suit-tab suit-tab-accountpayments'\n can_delete = False\n max_num = 0\n\n dollar_amount = right_dollar_field(\"amount\", \"Amount\")", "metadata": "root.PaymentInline", "header": "['module', '___EOS___']", "index": 2268 }, { "content": "class AccountAdmin(admin.ModelAdmin):\n list_display = (\"site\", \"balance_due\")\n\n inlines = [InvoiceInline, PaymentInline, PendingChargeInline]\n\n fieldsets = [\n (None, {'fields': ['site', 'dollar_balance_due', 'dollar_total_invoices', 'dollar_total_payments'], 'classes':['suit-tab suit-tab-general']}), ]\n\n readonly_fields = ['site', 'dollar_balance_due',\n 'dollar_total_invoices', 'dollar_total_payments']\n\n suit_form_tabs = (\n ('general', 'Account Details'),\n ('accountinvoice', 'Invoices'),\n ('accountpayments', 'Payments'),\n ('accountpendingcharges', 'Pending Charges'),\n )\n\n dollar_balance_due = dollar_field(\"balance_due\", \"Balance Due\")\n dollar_total_invoices = dollar_field(\"total_invoices\", \"Total Invoices\")\n dollar_total_payments = dollar_field(\"total_payments\", \"Total Payments\")", "metadata": "root.AccountAdmin", "header": "['module', '___EOS___']", "index": 2282 }, { "content": "class ProgramForm(forms.ModelForm):\n\n class Meta:\n model = Program\n widgets = {\n 'contents': UploadTextareaWidget(attrs={'rows': 20, 'cols': 80, 'class': \"input-xxlarge\"}),\n 'description': forms.Textarea(attrs={'rows': 3, 'cols': 80, 'class': 'input-xxlarge'}),\n 'messages': forms.Textarea(attrs={'rows': 20, 'cols': 80, 'class': 'input-xxlarge'}),\n 'output': forms.Textarea(attrs={'rows': 3, 'cols': 80, 'class': 'input-xxlarge'})\n }", "metadata": "root.ProgramForm", "header": "['module', '___EOS___']", "index": 2305 }, { "content": "class ProgramAdmin(XOSBaseAdmin):\n list_display = (\"name\", \"status\")\n list_display_links = ('name', \"status\")\n\n form = ProgramForm\n\n fieldsets = [\n (None, {'fields': ['name', 'command', 'kind', 'description', 'output', 'status'],\n 'classes':['suit-tab suit-tab-general']}),\n (None, {'fields': ['contents'],\n 'classes':['suit-tab suit-tab-contents']}),\n (None, {'fields': ['messages'],\n 'classes':['suit-tab suit-tab-messages']}),\n ]\n\n readonly_fields = (\"status\",)\n", "metadata": "root.ProgramAdmin", "header": "['module', '___EOS___']", "index": 2317 }, { "content": " @property\n def suit_form_tabs(self):\n tabs = [('general', 'Program Details'),\n ('contents', 'Program Source'),\n ('messages', 'Messages'),\n ]\n\n request = getattr(_thread_locals, \"request\", None)\n if request and request.user.is_admin:\n tabs.append(('admin-only', 'Admin-Only'))\n\n return tabs", "metadata": "root.ProgramAdmin.suit_form_tabs", "header": "['class', 'ProgramAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 2334 }, { "content": "class AddressPoolForm(forms.ModelForm):\n\n class Meta:\n model = Program\n widgets = {\n 'addresses': UploadTextareaWidget(attrs={'rows': 20, 'cols': 80, 'class': \"input-xxlarge\"}),\n }", "metadata": "root.AddressPoolForm", "header": "['module', '___EOS___']", "index": 2348 }, { "content": "class AddressPoolAdmin(XOSBaseAdmin):\n list_display = (\"name\", \"cidr\")\n list_display_links = ('name',)\n\n form = AddressPoolForm\n\n fieldsets = [\n (None, {'fields': ['name', 'cidr', 'gateway_ip', 'gateway_mac', 'addresses', 'inuse', 'service'],\n 'classes':['suit-tab suit-tab-general']}),\n ]\n\n readonly_fields = (\"status\",)\n", "metadata": "root.AddressPoolAdmin", "header": "['module', '___EOS___']", "index": 2357 }, { "content": " @property\n def suit_form_tabs(self):\n tabs = [('general', 'Program Details'),\n ('contents', 'Program Source'),\n ('messages', 'Messages'),\n ]\n\n# request=getattr(_thread_locals, \"request\", None)\n# if request and request.user.is_admin:\n# tabs.append( ('admin-only', 'Admin-Only') )\n\n return tabs", "metadata": "root.AddressPoolAdmin.suit_form_tabs", "header": "['class', 'AddressPoolAdmin', '(', 'XOSBaseAdmin', ')', ':', '___EOS___']", "index": 2370 } ]

[ { "span": "from django.contrib.auth.forms import (AdminPasswordChangeForm,\n ReadOnlyPasswordHashField)", "start_line": 10, "start_column": 0, "end_line": 11, "end_column": 65 }, { "span": "from django.contrib.auth.models import Group", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 44 }, { "span": "from django.forms.utils import flatatt, to_current_timezone", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 59 }, { "span": "from django.utils.encoding import force_text, python_2_unicode_compatible", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 73 }, { "span": "from django.utils.html import conditional_escape, format_html", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 61 } ]

[]

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[ { "content": " def unexpired_acknowledgement(self):\n try:\n return self.unexpired_acknowledgements()[0]\n except:\n return None", "metadata": "root.CheckGroupMixin.unexpired_acknowledgement", "header": "['class', 'CheckGroupMixin', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 216 }, { "content": " def last_result(self):\n try:\n return StatusCheckResult.objects.filter(check=self).order_by('-id').defer('raw_data')[0]\n except:\n return None", "metadata": "root.StatusCheck.last_result", "header": "['class', 'StatusCheck', '(', 'PolymorphicModel', ')', ':', '___EOS___']", "index": 494 }, { "content": " def _run(self):\n result = StatusCheckResult(check=self)\n\n failures = []\n graphite_output = parse_metric(self.metric, mins_to_check=self.frequency)\n\n try:\n result.raw_data = json.dumps(graphite_output['raw'])\n except:\n result.raw_data = graphite_output['raw']\n\n if graphite_output[\"error\"]:\n result.succeeded = False\n result.error = graphite_output[\"error\"]\n return result\n\n if graphite_output['num_series_with_data'] > 0:\n result.average_value = graphite_output['average_value']\n for s in graphite_output['series']:\n if not s[\"values\"]:\n continue\n failure_value = None\n if self.check_type == '<':\n if float(s['min']) < float(self.value):\n failure_value = s['min']\n elif self.check_type == '<=':\n if float(s['min']) <= float(self.value):\n failure_value = s['min']\n elif self.check_type == '>':\n if float(s['max']) > float(self.value):\n failure_value = s['max']\n elif self.check_type == '>=':\n if float(s['max']) >= float(self.value):\n failure_value = s['max']\n elif self.check_type == '==':\n if float(self.value) in s['values']:\n failure_value = float(self.value)\n else:\n raise Exception(u'Check type %s not supported' %\n self.check_type)\n\n if not failure_value is None:\n failures.append((s[\"target\"], failure_value))\n\n if len(failures) > self.allowed_num_failures:\n result.succeeded = False\n elif graphite_output['num_series_with_data'] < self.expected_num_hosts:\n result.succeeded = False\n else:\n result.succeeded = True\n\n if not result.succeeded:\n targets = [s[\"target\"] for s in graphite_output[\"series\"]]\n hosts = minimize_targets(targets)\n hosts_by_target = dict(zip(targets, hosts))\n\n result.error = self.format_error_message(\n failures,\n graphite_output['num_series_with_data'],\n hosts_by_target,\n )\n\n return result", "metadata": "root.GraphiteStatusCheck._run", "header": "['class', 'GraphiteStatusCheck', '(', 'StatusCheck', ')', ':', '___EOS___']", "index": 640 }, { "content": " @property\n def took(self):\n \"\"\"\n Time taken by check in ms\n \"\"\"\n try:\n diff = self.time_complete - self.time\n return (diff.microseconds + (diff.seconds + diff.days * 24 * 3600) * 10**6) / 1000\n except:\n return None", "metadata": "root.StatusCheckResult.took", "header": "['class', 'StatusCheckResult', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 845 } ]

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[ { "content": "\n# Authors: Veeresh Taranalli <veeresht@gmail.com>\n# License: BSD 3-Clause\n\n\"\"\"\n============================================\nChannel Models (:mod:`commpy.channels`)\n============================================\n\n.. autosummary::\n :toctree: generated/\n\n bec -- Binary Erasure Channel.\n bsc -- Binary Symmetric Channel.\n awgn -- Additive White Gaussian Noise Channel.\n\n\"\"\"\n\nfrom numpy import complex, sum, pi, arange, array, size, shape, real, sqrt\nfrom numpy import matrix, sqrt, sum, zeros, concatenate, sinc\nfrom numpy.random import randn, seed, random\n#from scipy.special import gamma, jn\n#from scipy.signal import hamming, convolve, resample\n#from scipy.fftpack import ifft, fftshift, fftfreq\n#from scipy.interpolate import interp1d\n\n__all__=['bec', 'bsc', 'awgn']\n\n\n\n\n\n\n\n\n\n\n# =============================================================================\n# Incomplete code to implement fading channels\n# =============================================================================\n\n#def doppler_jakes(max_doppler, filter_length):\n\n# fs = 32.0*max_doppler\n# ts = 1/fs\n# m = arange(0, filter_length/2)\n\n # Generate the Jakes Doppler Spectrum impulse response h[m]\n# h_jakes_left = (gamma(3.0/4) *\n# pow((max_doppler/(pi*abs((m-(filter_length/2))*ts))), 0.25) *\n# jn(0.25, 2*pi*max_doppler*abs((m-(filter_length/2))*ts)))\n# h_jakes_center = array([(gamma(3.0/4)/gamma(5.0/4)) * pow(max_doppler, 0.5)])\n# h_jakes = concatenate((h_jakes_left[0:filter_length/2-1],\n# h_jakes_center, h_jakes_left[::-1]))\n# h_jakes = h_jakes*hamming(filter_length)\n# h_jakes = h_jakes/(sum(h_jakes**2)**0.5)\n\n# -----------------------------------------------------------------------------\n# jakes_psd_right = (1/(pi*max_doppler*(1-(freqs/max_doppler)**2)**0.5))**0.5\n# zero_pad = zeros([(fft_size-filter_length)/2, ])\n# jakes_psd = concatenate((zero_pad, jakes_psd_right[::-1],\n# jakes_psd_right, zero_pad))\n #print size(jakes_psd)\n# jakes_impulse = real(fftshift(ifft(jakes_psd, fft_size)))\n# h_jakes = jakes_impulse[(fft_size-filter_length)/2 + 1 : (fft_size-filter_length)/2 + filter_length + 1]\n# h_jakes = h_jakes*hamming(filter_length)\n# h_jakes = h_jakes/(sum(h_jakes**2)**0.5)\n# -----------------------------------------------------------------------------\n# return h_jakes\n\n#def rayleigh_channel(ts_input, max_doppler, block_length, path_gains,\n# path_delays):\n\n# fs_input = 1.0/ts_input\n# fs_channel = 32.0*max_doppler\n# ts_channel = 1.0/fs_channel\n# interp_factor = fs_input/fs_channel\n# channel_length = block_length/interp_factor\n# n1 = -10\n# n2 = 10\n\n# filter_length = 1024\n\n # Generate the Jakes Doppler Spectrum impulse response h[m]\n# h_jakes = doppler_jakes(max_doppler, filter_length)\n\n # Generate the complex Gaussian Random Process\n# g_var = 0.5\n# gain_process = zeros([len(path_gains), block_length], dtype=complex)\n# delay_process = zeros([n2+1-n1, len(path_delays)])\n# for k in xrange(len(path_gains)):\n# g = (g_var**0.5) * (randn(channel_length) + 1j*randn(channel_length))\n# g_filt = convolve(g, h_jakes, mode='same')\n# g_filt_interp = resample(g_filt, block_length)\n# gain_process[k,:] = pow(10, (path_gains[k]/10.0)) * g_filt_interp\n# delay_process[:,k] = sinc((path_delays[k]/ts_input) - arange(n1, n2+1))\n\n #channel_matrix = 0\n# channel_matrix = matrix(delay_process)*matrix(gain_process)\n\n# return channel_matrix, gain_process, h_jakes\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def bec(input_bits, p_e):\n \"\"\"\n Binary Erasure Channel.\n\n Parameters\n ----------\n input_bits : 1D ndarray containing {0, 1}\n Input arrary of bits to the channel.\n\n p_e : float in [0, 1]\n Erasure probability of the channel.\n\n Returns\n -------\n output_bits : 1D ndarray containing {0, 1}\n Output bits from the channel.\n \"\"\"\n output_bits = input_bits.copy()\n output_bits[random(len(output_bits)) <= p_e] = -1\n return output_bits", "metadata": "root.bec", "header": "['module', '___EOS___']", "index": 28 }, { "content": "def bsc(input_bits, p_t):\n \"\"\"\n Binary Symmetric Channel.\n\n Parameters\n ----------\n input_bits : 1D ndarray containing {0, 1}\n Input arrary of bits to the channel.\n\n p_t : float in [0, 1]\n Transition/Error probability of the channel.\n\n Returns\n -------\n output_bits : 1D ndarray containing {0, 1}\n Output bits from the channel.\n \"\"\"\n output_bits = input_bits.copy()\n flip_locs = (random(len(output_bits)) <= p_t)\n output_bits[flip_locs] = 1 ^ output_bits[flip_locs]\n return output_bits", "metadata": "root.bsc", "header": "['module', '___EOS___']", "index": 49 }, { "content": "def awgn(input_signal, snr_dB, rate=1.0):\n \"\"\"\n Addditive White Gaussian Noise (AWGN) Channel.\n\n Parameters\n ----------\n input_signal : 1D ndarray of floats\n Input signal to the channel.\n\n snr_dB : float\n Output SNR required in dB.\n\n rate : float\n Rate of the a FEC code used if any, otherwise 1.\n\n Returns\n -------\n output_signal : 1D ndarray of floats\n Output signal from the channel with the specified SNR.\n \"\"\"\n\n avg_energy = sum(input_signal * input_signal)/len(input_signal)\n snr_linear = 10**(snr_dB/10.0)\n noise_variance = avg_energy/(2*rate*snr_linear)\n\n if input_signal.dtype is complex:\n noise = (sqrt(noise_variance) * randn(len(input_signal))) + (sqrt(noise_variance) * randn(len(input_signal))*1j)\n else:\n noise = sqrt(2*noise_variance) * randn(len(input_signal))\n\n output_signal = input_signal + noise\n\n return output_signal", "metadata": "root.awgn", "header": "['module', '___EOS___']", "index": 71 } ]

[ { "span": "from numpy import complex, sum, pi, arange, array, size, shape, real, sqrt", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 74 }, { "span": "from numpy import matrix, sqrt, sum, zeros, concatenate, sinc", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 61 }, { "span": "from numpy.random import randn, seed, random", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 44 } ]

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[ { "content": " def way(self, w):\n is_highway = False\n is_big = False\n name = ''\n highway_type = None\n\n for tag in w.tags:\n if tag.k == 'name':\n name = tag.v\n # and tag.v in ['primary', 'secondary', 'tertiary', 'trunk']\n if tag.k == 'highway':\n highway_type = tag.v\n is_highway = True\n #try:\n # if tag.k == 'lanes' and int(tag.v[len(tag.v)-1]) >= 2:\n # is_big = True\n # # #for t in w.tags:\n # # # print \"tag {} {}\".format(t.k, t.v)\n #except:\n # print(\"exception, weird lanes designation {}\".format(tag.v))\n\n # or not is_big\n if not is_highway:\n return\n \n if not highway_type in self.types:\n self.types.append(highway_type)\n\n way_dict = {'visible': w.visible,\n 'deleted': w.deleted,\n 'uid': w.uid,\n 'highway_type': highway_type,\n 'ends_have_same_id': w.ends_have_same_id(),\n 'id': w.id,\n 'tags':[]}\n for tag in w.tags:\n way_dict['tags'].append((tag.k, tag.v))\n\n try:\n wkb = wkbfab.create_linestring(w)\n except:\n # throws on single point ways\n return\n line = wkblib.loads(wkb, hex=True)\n reverse_points = []\n for point in list(line.coords):\n reverse_points.append([point[1],point[0]])\n way_dict['linestring'] = reverse_points\n self.ways.append(way_dict)", "metadata": "root.WayExtracter.way", "header": "['class', 'WayExtracter', '(', 'o', '.', 'SimpleHandler', ')', ':', '___EOS___']", "index": 51 } ]

[ { "span": "is_big ", "start_line": 53, "start_column": 8, "end_line": 53, "end_column": 14 }, { "span": "name ", "start_line": 59, "start_column": 12, "end_line": 59, "end_column": 16 } ]

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[ { "content": " def execute(self, parameters, messages):\n \"\"\"The source code of the tool.\"\"\"\n\n arcpy.env.workspace = parameters[0].value\n schema_version = parameters[1].value\n\n # Number of low IDs per hi ID\n # Higher batch sizes mean less updating of the table, lower batch sizes more\n # efficient ID usage especially when multiple processes access the table.\n hi_batchsize = parameters[2].value\n\n # Name of the table used to maintain hi/lo counter status per feature class. Value depends on schema version.\n generate_ID_table_name = \"GenerateID\"\n seqnameField = \"name\"\n seqcounterField = \"hi\"\n seqintervalField = \"low\"\n if schema_version == \"1.4\" or schema_version == \"1.5\":\n generate_ID_table_name = \"GenerateId\"\n seqnameField = \"SEQNAME\"\n seqcounterField = \"SEQCOUNTER\"\n seqintervalField = \"SEQINTERV\"\n\n # check whether sequences table has already been created and create if not.\n new_table = None\n counter_tbl_list = arcpy.ListTables(generate_ID_table_name)\n if not counter_tbl_list:\n arcpy.AddMessage(\"Creating new \" + generate_ID_table_name +\" table.\")\n new_table = True\n generate_ID_table = arcpy.CreateTable_management(arcpy.env.workspace, generate_ID_table_name)\n if schema_version == \"1.3\":\n arcpy.AddField_management(generate_ID_table, seqnameField, \"TEXT\", None, None, 50, \"Feature Class Name\", \"NON_NULLABLE\", \"REQUIRED\")\n arcpy.AddField_management(generate_ID_table, seqcounterField, \"LONG\", None, None, None, \"Hi counter\", \"NON_NULLABLE\", \"REQUIRED\")\n arcpy.AddField_management(generate_ID_table, seqintervalField, \"LONG\", None, None, None, \"Low counter\", \"NON_NULLABLE\", \"REQUIRED\")\n if schema_version == \"1.4\" or schema_version == \"1.5\": # identical schema to attribute assistant\n arcpy.AddField_management(generate_ID_table, seqnameField, \"TEXT\", None, None, 50, \"Sequence Name\", \"NON_NULLABLE\", \"NON_REQUIRED\")\n arcpy.AddField_management(generate_ID_table, seqcounterField, \"LONG\", None, None, None, \"Sequence Counter\", \"NON_NULLABLE\", \"NON_REQUIRED\")\n arcpy.AddField_management(generate_ID_table, seqintervalField, \"SHORT\", None, None, None, \"Interval Value\", \"NULLABLE\", \"NON_REQUIRED\")\n arcpy.AddField_management(generate_ID_table, \"COMMENTS\", \"TEXT\", None, None, 255, \"Comments\", \"NULLABLE\", \"NON_REQUIRED\")\n else:\n new_table = False\n generate_ID_table = counter_tbl_list[0]\n\n # go through feature classes to create FIDs where needed.\n fc_list = arcpy.ListFeatureClasses()\n for fc in fc_list:\n arcpy.AddMessage(\"Processing \" + fc)\n counter = 0 # counter in this session, range is always 0 ... [interval - 1]\n baseCount = 0 # value\n interval = hi_batchsize # batchsize/interval size\n\n # if we only created the GenerateID table, we know we have to insert the counter.\n if new_table:\n insert_new_counter_cursor = arcpy.da.InsertCursor(generate_ID_table_name, [seqnameField, seqcounterField, seqintervalField])\n insert_new_counter_cursor.insertRow((fc, 0, hi_batchsize))\n del insert_new_counter_cursor\n\n # check if a counter of fc_name exists and retrieve value\n counterParams = None\n escaped_name = arcpy.AddFieldDelimiters(generate_ID_table_name, seqnameField)\n where_clause = escaped_name + \" = \" + \"'\" + fc + \"'\"\n with arcpy.da.SearchCursor(generate_ID_table_name, [seqnameField, seqcounterField, seqintervalField], where_clause) as rows:\n for counterRow in rows:\n counterParams = counterRow\n break\n\n if counterParams != None:\n baseCount = counterParams[1]\n interval = counterParams[2]\n else:\n # create that counter\n insert_new_counter_cursor = arcpy.da.InsertCursor(generate_ID_table_name, [seqnameField, seqcounterField, seqintervalField])\n insert_new_counter_cursor.insertRow((fc, 0, hi_batchsize))\n del insert_new_counter_cursor\n\n with arcpy.da.SearchCursor(generate_ID_table_name, [seqnameField, seqcounterField, seqintervalField]) as rows:\n for row in rows:\n if row[0] == fc:\n baseCount = row[1]\n interval = row[2]\n break\n\n # increment counter to indicate that it is in active usage\n self.incrementCounter(generate_ID_table_name, seqnameField, seqcounterField, fc, baseCount + interval)\n\n # check if feature class already has a FID, add it if not.\n fid_name = fc + \"FID\"\n fields_list = arcpy.ListFields(fc, fid_name)\n if not fields_list:\n arcpy.AddField_management(fc, fid_name, \"TEXT\", None, None, 50, \"Feature ID\", None, None)\n\n # modify FID of object if required\n with arcpy.da.UpdateCursor(fc, [fid_name]) as rows:\n for row in rows:\n if row[0] == None:\n if counter >= interval:\n # get new baseCount from GenerateId\n arcpy.AddMessage(\"Interval exhausted, getting next Interval.\")\n with arcpy.da.SearchCursor(generate_ID_table_name, [seqcounterField], where_clause) as rows:\n for counterRow in rows:\n baseCount = counterRow[0]\n break\n\n # Reset local counter\n counter = 0\n row[0] = fc + \"/\" + str(baseCount + counter)\n counter += 1\n rows.updateRow(row)\n\n # write back the new counter value to the GenerateID table.\n with arcpy.da.UpdateCursor(generate_ID_table_name, [seqnameField, seqcounterField]) as rows:\n for newRow in rows:\n if newRow[0] == fc:\n newRow[1] = baseCount + counter\n rows.updateRow(newRow)\n break\n\n arcpy.AddMessage(\"Completed adding of Feature IDs.\")\n return", "metadata": "root.FeatureIdGenerator.execute", "header": "['class', 'FeatureIdGenerator', '(', 'object', ')', ':', '___EOS___']", "index": 88 } ]

[ { "span": "row[0] == None:", "start_line": 181, "start_column": 23, "end_line": 181, "end_column": 37 } ]

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[ { "content": "from src.platform.tomcat.authenticate import checkAuth\nfrom src.platform.tomcat.interfaces import TINTERFACES\nfrom auxiliary import Auxiliary\nfrom log import LOG\nimport utility\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Auxiliary:\n \"\"\" Obtain a list of deployed WARs\n \"\"\"\n\n\n", "metadata": "root.Auxiliary", "header": "['module', '___EOS___']", "index": 7 }, { "content": " def __init__(self):\n self.name = 'List deployed WARs'\n self.versions = ['Any']\n self.flag = 'tc-list'", "metadata": "root.Auxiliary.__init__", "header": "['class', 'Auxiliary', ':', '___EOS___']", "index": 11 }, { "content": " def check(self, fingerprint):\n \"\"\"\n \"\"\"\n \n if fingerprint.title == TINTERFACES.MAN:\n return True\n\n return False", "metadata": "root.Auxiliary.check", "header": "['class', 'Auxiliary', ':', '___EOS___']", "index": 16 }, { "content": " def run(self, fingerengine, fingerprint):\n \"\"\" Obtain a list of deployed WARs on a remote Tomcat instance\n \"\"\"\n\n utility.Msg(\"Obtaining deployed applications...\")\n base = \"http://{0}:{1}\".format(fingerengine.options.ip,\n fingerprint.port)\n relative = '/manager/list'\n \n if fingerprint.version in [\"7.0\", \"8.0\"]:\n relative = '/manager/text/list'\n\n url = base + relative\n\n response = utility.requests_get(url)\n if response.status_code == 401:\n utility.Msg('Host %s:%s requires auth, checking...' %\n (fingerengine.options.ip, fingerprint.port), LOG.DEBUG)\n cookies = checkAuth(fingerengine.options.ip, fingerprint.port,\n fingerprint.title, fingerprint.version)\n\n if cookies:\n response = utility.requests_get(url, cookies=cookies[0], \n auth=cookies[1])\n else:\n utility.Msg(\"Could not get auth for %s:%s\" % \n (fingerengine.options.ip, fingerprint.port), LOG.ERROR)\n return\n \n if response.status_code == 200:\n\n apps = response.content.split('\\n')[1:-1]\n for app in apps:\n utility.Msg(\"App found: %s\" % app.split(':', 1)[0])\n\n else:\n utility.Msg(\"Unable to retrieve %s (HTTP %d)\" % (url, \n response.status_code), LOG.DEBUG)", "metadata": "root.Auxiliary.run", "header": "['class', 'Auxiliary', ':', '___EOS___']", "index": 25 } ]

[ { "span": "from auxiliary import Auxiliary", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 31 } ]

[]

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[ { "content": "#\n# ImageViewMpl.py -- a backend for Ginga using a Matplotlib figure\n#\n# This is open-source software licensed under a BSD license.\n# Please see the file LICENSE.txt for details.\n\nimport sys, re\nimport numpy\nimport threading\nimport math\nfrom io import BytesIO\n\n# Matplotlib imports\nimport matplotlib\nfrom matplotlib.image import FigureImage\nfrom matplotlib.figure import Figure\nimport matplotlib.lines as lines\n#from matplotlib.path import Path\n\nfrom ginga import ImageView\nfrom ginga import Mixins, Bindings, colors\nfrom . import transform\nfrom ginga.mplw.CanvasRenderMpl import CanvasRenderer\n\n# Override some matplotlib keyboard UI defaults\nrc = matplotlib.rcParams\n# TODO: figure out how to keep from overriding the user's desirable\n# rcParams\nrc.update(matplotlib.rcParamsDefault)\nrc['keymap.fullscreen'] = 'f' # toggling full screen\nrc['keymap.home'] = 'home' # home or reset mnemonic\nrc['keymap.back'] = 'left' # forward / backward keys to enable\nrc['keymap.forward'] = 'right' # left handed quick navigation\nrc['keymap.pan'] = [] # pan mnemonic\nrc['keymap.zoom'] = [] # zoom mnemonic\nrc['keymap.save'] = 'ctrl+s' # saving current figure\n#rc['keymap.quit'] = 'ctrl+w' # close the current figure\nrc['keymap.grid'] = 'ctrl+g' # switching on/off a grid in current axes\nrc['keymap.yscale'] = [] # toggle scaling of y-axes ('log'/'linear')\nrc['keymap.xscale'] = [] # toggle scaling of x-axes ('log'/'linear')\nrc['keymap.all_axes'] = [] # enable all axes\n\n\n\n\n\n\n\n\n\n#END\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ImageViewMplError(ImageView.ImageViewError):\n pass", "metadata": "root.ImageViewMplError", "header": "['module', '___EOS___']", "index": 43 }, { "content": "class ImageViewMpl(ImageView.ImageViewBase):\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.ImageViewMpl", "header": "['module', '___EOS___']", "index": 46 }, { "content": " def __init__(self, logger=None, rgbmap=None, settings=None):\n ImageView.ImageViewBase.__init__(self, logger=logger,\n rgbmap=rgbmap,\n settings=settings)\n # Our Figure\n self.figure = None\n # Our Axes\n self.ax_img = None\n self.ax_util = None\n # Holds the image on ax_img\n self.mpimage = None\n\n # NOTE: matplotlib manages it's Y coordinates by default with\n # the origin at the bottom (see base class)\n self._originUpper = False\n\n self.img_fg = (1.0, 1.0, 1.0)\n self.img_bg = (0.5, 0.5, 0.5)\n\n self.message = None\n\n self.in_axes = False\n # Matplotlib expects RGBA data for color images\n self._rgb_order = 'RGBA'\n\n self.renderer = CanvasRenderer(self)\n\n # cursors\n self.cursor = {}\n\n # For timing events\n self._msg_timer = None\n self._defer_timer = None\n\n self.t_.setDefaults(show_pan_position=False,\n onscreen_ff='Sans Serif')", "metadata": "root.ImageViewMpl.__init__", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 48 }, { "content": " def set_figure(self, figure):\n \"\"\"Call this with the matplotlib Figure() object.\"\"\"\n self.figure = figure\n\n ax = self.figure.add_axes((0, 0, 1, 1), frame_on=False)\n #ax = fig.add_subplot(111)\n self.ax_img = ax\n # We don't want the axes cleared every time plot() is called\n ax.hold(False)\n # TODO: is this needed, since frame_on == False?\n ax.get_xaxis().set_visible(False)\n ax.get_yaxis().set_visible(False)\n #ax.patch.set_alpha(0.0)\n ax.patch.set_visible(False)\n #ax.autoscale(enable=True, tight=True)\n ax.autoscale(enable=False)\n\n # Add an overlapped axis for drawing graphics\n newax = self.figure.add_axes(self.ax_img.get_position(),\n sharex=ax, sharey=ax,\n frameon=False)\n newax.hold(True)\n newax.autoscale(enable=False)\n newax.get_xaxis().set_visible(False)\n newax.get_yaxis().set_visible(False)\n self.ax_util = newax\n\n # Create timers\n self._msg_timer = None\n self._defer_timer = None\n\n if hasattr(figure.canvas, 'new_timer'):\n self._msg_timer = figure.canvas.new_timer()\n self._msg_timer.single_shot = True\n self._msg_timer.add_callback(self.onscreen_message_off)\n\n self._defer_timer = figure.canvas.new_timer()\n self._defer_timer.single_shot = True\n self._defer_timer.add_callback(self.delayed_redraw)\n\n # marker drawn at the center of the image for debugging\n self.cross1 = lines.Line2D((0.49, 0.51), (0.50, 0.50),\n transform=newax.transAxes,\n color='red', alpha=1.0)\n self.cross2 = lines.Line2D((0.50, 0.50), (0.49, 0.51),\n transform=newax.transAxes,\n color='red', alpha=1.0)\n\n canvas = figure.canvas\n if hasattr(canvas, 'viewer'):\n canvas.set_viewer(self)\n else:\n canvas.mpl_connect(\"resize_event\", self._resize_cb)\n\n # Because we don't know if resize callback works with all backends\n left, bottom, wd, ht = self.ax_img.bbox.bounds\n self.configure_window(wd, ht)", "metadata": "root.ImageViewMpl.set_figure", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 85 }, { "content": " def get_figure(self):\n return self.figure", "metadata": "root.ImageViewMpl.get_figure", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 143 }, { "content": " def set_widget(self, canvas):\n if hasattr(canvas, 'viewer'):\n canvas.set_viewer(self)", "metadata": "root.ImageViewMpl.set_widget", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 146 }, { "content": " def get_widget(self):\n return self.figure.canvas", "metadata": "root.ImageViewMpl.get_widget", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 150 }, { "content": " def get_rgb_order(self):\n return self._rgb_order", "metadata": "root.ImageViewMpl.get_rgb_order", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 153 }, { "content": " def calculate_aspect(self, shape, extent):\n dx = abs(extent[1] - extent[0]) / float(shape[1])\n dy = abs(extent[3] - extent[2]) / float(shape[0])\n return dx / dy", "metadata": "root.ImageViewMpl.calculate_aspect", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 156 }, { "content": " def render_image1(self, rgbobj, dst_x, dst_y):\n \"\"\"Render the image represented by (rgbobj) at dst_x, dst_y\n in the pixel space.\n\n NOTE: this version uses a Figure.FigImage to render the image.\n \"\"\"\n self.logger.debug(\"redraw surface\")\n if self.figure is None:\n return\n ## left, bottom, width, height = self.ax_img.bbox.bounds\n ## self._imgwin_wd, self._imgwin_ht = width, height\n\n # Grab the RGB array for the current image and place it in the\n # matplotlib figure axis\n data = self.getwin_array(order=self._rgb_order)\n\n dst_x = dst_y = 0\n\n # fill background color\n ## rect = self.figure.patch\n ## rect.set_facecolor(self.img_bg)\n\n # attempt 1: using a FigureImage (non-scaled)\n if self.mpimage is None:\n self.mpimage = self.figure.figimage(data, xo=dst_x, yo=dst_y,\n origin='upper')\n\n else:\n # note: this is not a typo--these offsets have a different\n # attribute name than in the constructor ('ox' vs. 'xo')\n self.mpimage.ox = dst_x\n self.mpimage.oy = dst_y\n self.mpimage.set_data(data)", "metadata": "root.ImageViewMpl.render_image1", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 161 }, { "content": " def render_image2(self, rgbobj, dst_x, dst_y):\n \"\"\"Render the image represented by (rgbobj) at dst_x, dst_y\n in the pixel space.\n\n NOTE: this version renders the image in an Axes with imshow().\n \"\"\"\n self.logger.debug(\"redraw surface\")\n if self.figure is None:\n return\n\n ## left, bottom, width, height = self.ax_img.bbox.bounds\n ## self._imgwin_wd, self._imgwin_ht = width, height\n\n # Grab the RGB array for the current image and place it in the\n # matplotlib figure axis\n arr = self.getwin_array(order=self._rgb_order)\n\n # Get the data extents\n x0, y0 = 0, 0\n y1, x1 = arr.shape[:2]\n flipx, flipy, swapxy = self.get_transforms()\n if swapxy:\n x0, x1, y0, y1 = y0, y1, x0, x1\n\n extent = (x0, x1, y1, y0)\n self.logger.debug(\"extent=%s\" % (str(extent)))\n\n # Calculate aspect ratio\n aspect = self.calculate_aspect(arr.shape, extent)\n\n if self.mpimage is None:\n img = self.ax_img.imshow(arr, interpolation='none',\n origin=\"upper\",\n vmin=0, vmax=255,\n extent=extent,\n aspect=aspect)\n self.mpimage = img\n\n else:\n self.mpimage.set_data(arr)\n self.ax_img.set_aspect(aspect)\n self.mpimage.set_extent(extent)\n #self.ax_img.relim()", "metadata": "root.ImageViewMpl.render_image2", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 195 }, { "content": " def render_image(self, rgbobj, dst_x, dst_y):\n\n # Ugly, ugly hack copied from matplotlib.lines to cause line\n # objects to recompute their cached transformed_path\n # Other mpl artists don't seem to have this affliction\n for ax in self.figure.axes:\n if not (ax in (self.ax_img, self.ax_util)):\n if hasattr(ax, \"lines\"):\n for line in ax.lines:\n try:\n line._transformed_path.invalidate()\n except AttributeError:\n pass\n\n # render_image1() currently seems a little faster\n if self.in_axes:\n self.render_image2(rgbobj, dst_x, dst_y)\n else:\n self.render_image1(rgbobj, dst_x, dst_y)\n\n # clear utility axis\n self.ax_util.cla()\n\n # Draw a cross in the center of the window in debug mode\n if self.t_['show_pan_position']:\n self.ax_util.add_line(self.cross1)\n self.ax_util.add_line(self.cross2)\n\n # render message if there is one currently\n if self.message:\n self.draw_message(self.message)\n\n # force an update of the figure\n self.figure.canvas.draw()\n\n # Set the axis limits\n # TODO: should we do this only for those who have autoaxis=True?\n ## wd, ht = self.get_window_size()\n ## x0, y0 = self.get_data_xy(0, 0)\n ## x1, tm = self.get_data_xy(wd-1, 0)\n ## tm, y1 = self.get_data_xy(0, ht-1)\n ## for ax in self.figure.axes:\n ## ax.set_xlim(x0, x1)\n ## ax.set_ylim(y0, y1)", "metadata": "root.ImageViewMpl.render_image", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 239 }, { "content": " def draw_message(self, message):\n # r, g, b = self.img_fg\n self.ax_util.text(0.5, 0.33, message,\n fontsize=24, horizontalalignment='center',\n color='white',\n verticalalignment='center',\n transform=self.ax_util.transAxes)", "metadata": "root.ImageViewMpl.draw_message", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 284 }, { "content": " def configure_window(self, width, height):\n self.configure(width, height)", "metadata": "root.ImageViewMpl.configure_window", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 292 }, { "content": " def _resize_cb(self, event):\n wd, ht = event.width, event.height\n self.logger.debug(\"canvas resized %dx%d\" % (wd, ht))\n self.configure_window(wd, ht)", "metadata": "root.ImageViewMpl._resize_cb", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 295 }, { "content": " def add_axes(self):\n ax = self.figure.add_axes(self.ax_img.get_position(),\n #sharex=self.ax_img, sharey=self.ax_img,\n frameon=False,\n viewer=self,\n projection='ginga')\n ax.get_xaxis().set_visible(False)\n ax.get_yaxis().set_visible(False)\n return ax", "metadata": "root.ImageViewMpl.add_axes", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 300 }, { "content": " def get_png_image_as_buffer(self, output=None):\n ibuf = output\n if ibuf is None:\n ibuf = BytesIO()\n qimg = self.figure.write_to_png(ibuf)\n return ibuf", "metadata": "root.ImageViewMpl.get_png_image_as_buffer", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 310 }, { "content": " def update_image(self):\n pass", "metadata": "root.ImageViewMpl.update_image", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 317 }, { "content": " def set_cursor(self, cursor):\n pass", "metadata": "root.ImageViewMpl.set_cursor", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 320 }, { "content": " def define_cursor(self, ctype, cursor):\n self.cursor[ctype] = cursor", "metadata": "root.ImageViewMpl.define_cursor", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 323 }, { "content": " def get_cursor(self, ctype):\n return self.cursor[ctype]", "metadata": "root.ImageViewMpl.get_cursor", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 326 }, { "content": " def switch_cursor(self, ctype):\n self.set_cursor(self.cursor[ctype])", "metadata": "root.ImageViewMpl.switch_cursor", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 329 }, { "content": " def set_fg(self, r, g, b):\n self.img_fg = (r, g, b)\n self.redraw(whence=3)", "metadata": "root.ImageViewMpl.set_fg", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 332 }, { "content": " def onscreen_message(self, text, delay=None):\n try:\n self._msg_timer.stop()\n except:\n pass\n\n self.message = text\n self.redraw(whence=3)\n\n if delay:\n time_ms = int(delay * 1000.0)\n self._msg_timer.interval = time_ms\n self._msg_timer.start()", "metadata": "root.ImageViewMpl.onscreen_message", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 336 }, { "content": " def onscreen_message_off(self):\n return self.onscreen_message(None)", "metadata": "root.ImageViewMpl.onscreen_message_off", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 350 }, { "content": " def reschedule_redraw(self, time_sec):\n\n if self._defer_timer is None:\n self.delayed_redraw()\n return\n\n try:\n self._defer_timer.stop()\n except:\n pass\n\n time_ms = int(time_sec * 1000)\n try:\n self._defer_timer.interval = time_ms\n self._defer_timer.start()\n\n except Exception as e:\n self.logger.warning(\"Exception starting timer: %s; \"\n \"using unoptomized redraw\" % (str(e)))\n self.delayed_redraw()", "metadata": "root.ImageViewMpl.reschedule_redraw", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 353 }, { "content": " def show_pan_mark(self, tf):\n self.t_.set(show_pan_position=tf)\n self.redraw(whence=3)", "metadata": "root.ImageViewMpl.show_pan_mark", "header": "['class', 'ImageViewMpl', '(', 'ImageView', '.', 'ImageViewBase', ')', ':', '___EOS___']", "index": 374 }, { "content": "class ImageViewEvent(ImageViewMpl):\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.ImageViewEvent", "header": "['module', '___EOS___']", "index": 378 }, { "content": " def __init__(self, logger=None, rgbmap=None, settings=None):\n ImageViewMpl.__init__(self, logger=logger, rgbmap=rgbmap,\n settings=settings)\n\n # last known window mouse position\n self.last_win_x = 0\n self.last_win_y = 0\n # last known data mouse position\n self.last_data_x = 0\n self.last_data_y = 0\n # Does widget accept focus when mouse enters window\n self.enter_focus = self.t_.get('enter_focus', True)\n\n # @$%&^(_)*&^ gnome!!\n self._keytbl = {\n 'shift': 'shift_l',\n 'control': 'control_l',\n 'alt': 'alt_l',\n 'win': 'super_l',\n '`': 'backquote',\n '\"': 'doublequote',\n \"'\": 'singlequote',\n '\\\\': 'backslash',\n ' ': 'space',\n # NOTE: not working\n 'escape': 'escape',\n 'enter': 'return',\n # NOTE: not working\n 'tab': 'tab',\n # NOTE: all Fn keys not working\n 'f1': 'f1',\n 'f2': 'f2',\n 'f3': 'f3',\n 'f4': 'f4',\n 'f5': 'f5',\n 'f6': 'f6',\n 'f7': 'f7',\n 'f8': 'f8',\n 'f9': 'f9',\n 'f10': 'f10',\n 'f11': 'f11',\n 'f12': 'f12',\n }\n\n # Define cursors for pick and pan\n #hand = openHandCursor()\n hand = 0\n self.define_cursor('pan', hand)\n #cross = thinCrossCursor('aquamarine')\n cross = 1\n self.define_cursor('pick', cross)\n\n for name in ('motion', 'button-press', 'button-release',\n 'key-press', 'key-release', 'drag-drop',\n 'scroll', 'map', 'focus', 'enter', 'leave',\n ):\n self.enable_callback(name)", "metadata": "root.ImageViewEvent.__init__", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 380 }, { "content": " def set_figure(self, figure):\n super(ImageViewEvent, self).set_figure(figure)\n\n connect = figure.canvas.mpl_connect\n #connect(\"map_event\", self.map_event)\n #connect(\"focus_in_event\", self.focus_event, True)\n #connect(\"focus_out_event\", self.focus_event, False)\n connect(\"figure_enter_event\", self.enter_notify_event)\n connect(\"figure_leave_event\", self.leave_notify_event)\n #connect(\"axes_enter_event\", self.enter_notify_event)\n #connect(\"axes_leave_event\", self.leave_notify_event)\n connect(\"motion_notify_event\", self.motion_notify_event)\n connect(\"button_press_event\", self.button_press_event)\n connect(\"button_release_event\", self.button_release_event)\n connect(\"key_press_event\", self.key_press_event)\n connect(\"key_release_event\", self.key_release_event)\n connect(\"scroll_event\", self.scroll_event)\n\n # TODO: drag-drop event", "metadata": "root.ImageViewEvent.set_figure", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 438 }, { "content": " def transkey(self, keyname):\n self.logger.debug(\"matplotlib keyname='%s'\" % (keyname))\n if keyname is None:\n return keyname\n try:\n return self._keytbl[keyname.lower()]\n\n except KeyError:\n return keyname", "metadata": "root.ImageViewEvent.transkey", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 458 }, { "content": " def get_keyTable(self):\n return self._keytbl", "metadata": "root.ImageViewEvent.get_keyTable", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 468 }, { "content": " def set_enter_focus(self, tf):\n self.enter_focus = tf", "metadata": "root.ImageViewEvent.set_enter_focus", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 471 }, { "content": " def focus_event(self, event, hasFocus):\n return self.make_callback('focus', hasFocus)", "metadata": "root.ImageViewEvent.focus_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 474 }, { "content": " def enter_notify_event(self, event):\n if self.enter_focus:\n self.focus_event(event, True)\n return self.make_callback('enter')", "metadata": "root.ImageViewEvent.enter_notify_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 477 }, { "content": " def leave_notify_event(self, event):\n self.logger.debug(\"leaving widget...\")\n if self.enter_focus:\n self.focus_event(event, False)\n return self.make_callback('leave')", "metadata": "root.ImageViewEvent.leave_notify_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 482 }, { "content": " def key_press_event(self, event):\n keyname = event.key\n keyname = self.transkey(keyname)\n if keyname is not None:\n self.logger.debug(\"key press event, key=%s\" % (keyname))\n return self.make_ui_callback('key-press', keyname)", "metadata": "root.ImageViewEvent.key_press_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 488 }, { "content": " def key_release_event(self, event):\n keyname = event.key\n keyname = self.transkey(keyname)\n if keyname is not None:\n self.logger.debug(\"key release event, key=%s\" % (keyname))\n return self.make_ui_callback('key-release', keyname)", "metadata": "root.ImageViewEvent.key_release_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 495 }, { "content": " def button_press_event(self, event):\n x, y = event.x, event.y\n button = 0\n if event.button in (1, 2, 3):\n button |= 0x1 << (event.button - 1)\n self.logger.debug(\"button event at %dx%d, button=%x\" % (x, y, button))\n\n data_x, data_y = self.get_data_xy(x, y)\n return self.make_ui_callback('button-press', button, data_x, data_y)", "metadata": "root.ImageViewEvent.button_press_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 502 }, { "content": " def button_release_event(self, event):\n x, y = event.x, event.y\n button = 0\n if event.button in (1, 2, 3):\n button |= 0x1 << (event.button - 1)\n self.logger.debug(\"button release at %dx%d button=%x\" % (x, y, button))\n\n data_x, data_y = self.get_data_xy(x, y)\n return self.make_ui_callback('button-release', button, data_x, data_y)", "metadata": "root.ImageViewEvent.button_release_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 512 }, { "content": " def get_last_win_xy(self):\n return (self.last_win_x, self.last_win_y)", "metadata": "root.ImageViewEvent.get_last_win_xy", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 522 }, { "content": " def get_last_data_xy(self):\n return (self.last_data_x, self.last_data_y)", "metadata": "root.ImageViewEvent.get_last_data_xy", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 525 }, { "content": " def motion_notify_event(self, event):\n button = 0\n x, y = event.x, event.y\n self.last_win_x, self.last_win_y = x, y\n\n if event.button in (1, 2, 3):\n button |= 0x1 << (event.button - 1)\n self.logger.debug(\"motion event at %dx%d, button=%x\" % (x, y, button))\n\n data_x, data_y = self.get_data_xy(x, y)\n self.last_data_x, self.last_data_y = data_x, data_y\n self.logger.debug(\"motion event at DATA %dx%d\" % (data_x, data_y))\n\n return self.make_ui_callback('motion', button, data_x, data_y)", "metadata": "root.ImageViewEvent.motion_notify_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 528 }, { "content": " def scroll_event(self, event):\n x, y = event.x, event.y\n\n # Matplotlib only gives us the number of steps of the scroll,\n # positive for up and negative for down. No horizontal scrolling.\n direction = None\n if event.step > 0:\n direction = 0.0\n elif event.step < 0:\n direction = 180.0\n\n amount = abs(event.step) * 15.0\n\n self.logger.debug(\"scroll deg=%f direction=%f\" % (\n amount, direction))\n\n data_x, data_y = self.get_data_xy(x, y)\n self.last_data_x, self.last_data_y = data_x, data_y\n\n return self.make_ui_callback('scroll', direction, amount,\n data_x, data_y)", "metadata": "root.ImageViewEvent.scroll_event", "header": "['class', 'ImageViewEvent', '(', 'ImageViewMpl', ')', ':', '___EOS___']", "index": 543 }, { "content": "class ImageViewZoom(Mixins.UIMixin, ImageViewEvent):\n\n # class variables for binding map and bindings can be set\n bindmapClass = Bindings.BindingMapper\n bindingsClass = Bindings.ImageViewBindings\n\n\n\n\n\n", "metadata": "root.ImageViewZoom", "header": "['module', '___EOS___']", "index": 565 }, { "content": " @classmethod\n def set_bindingsClass(cls, klass):\n cls.bindingsClass = klass", "metadata": "root.ImageViewZoom.set_bindingsClass", "header": "['class', 'ImageViewZoom', '(', 'Mixins', '.', 'UIMixin', ',', 'ImageViewEvent', ')', ':', '___NEWLINE___', '___NL___', '# class variables for binding map and bindings can be set', '___NL___', '___EOS___']", "index": 571 }, { "content": " @classmethod\n def set_bindmapClass(cls, klass):\n cls.bindmapClass = klass", "metadata": "root.ImageViewZoom.set_bindmapClass", "header": "['class', 'ImageViewZoom', '(', 'Mixins', '.', 'UIMixin', ',', 'ImageViewEvent', ')', ':', '___NEWLINE___', '___NL___', '# class variables for binding map and bindings can be set', '___NL___', '___EOS___']", "index": 575 }, { "content": " def __init__(self, logger=None, rgbmap=None, settings=None,\n bindmap=None, bindings=None):\n ImageViewEvent.__init__(self, logger=logger, rgbmap=rgbmap,\n settings=settings)\n Mixins.UIMixin.__init__(self)\n\n self.ui_setActive(True)\n\n if bindmap is None:\n bindmap = ImageViewZoom.bindmapClass(self.logger)\n self.bindmap = bindmap\n bindmap.register_for_events(self)\n\n if bindings is None:\n bindings = ImageViewZoom.bindingsClass(self.logger)\n self.set_bindings(bindings)", "metadata": "root.ImageViewZoom.__init__", "header": "['class', 'ImageViewZoom', '(', 'Mixins', '.', 'UIMixin', ',', 'ImageViewEvent', ')', ':', '___NEWLINE___', '___NL___', '# class variables for binding map and bindings can be set', '___NL___', '___EOS___']", "index": 579 }, { "content": " def get_bindmap(self):\n return self.bindmap", "metadata": "root.ImageViewZoom.get_bindmap", "header": "['class', 'ImageViewZoom', '(', 'Mixins', '.', 'UIMixin', ',', 'ImageViewEvent', ')', ':', '___NEWLINE___', '___NL___', '# class variables for binding map and bindings can be set', '___NL___', '___EOS___']", "index": 596 }, { "content": " def get_bindings(self):\n return self.bindings", "metadata": "root.ImageViewZoom.get_bindings", "header": "['class', 'ImageViewZoom', '(', 'Mixins', '.', 'UIMixin', ',', 'ImageViewEvent', ')', ':', '___NEWLINE___', '___NL___', '# class variables for binding map and bindings can be set', '___NL___', '___EOS___']", "index": 599 }, { "content": " def set_bindings(self, bindings):\n self.bindings = bindings\n bindings.set_bindings(self)", "metadata": "root.ImageViewZoom.set_bindings", "header": "['class', 'ImageViewZoom', '(', 'Mixins', '.', 'UIMixin', ',', 'ImageViewEvent', ')', ':', '___NEWLINE___', '___NL___', '# class variables for binding map and bindings can be set', '___NL___', '___EOS___']", "index": 602 }, { "content": "class CanvasView(ImageViewZoom):\n\n", "metadata": "root.CanvasView", "header": "['module', '___EOS___']", "index": 607 }, { "content": " def __init__(self, logger=None, settings=None, rgbmap=None,\n bindmap=None, bindings=None):\n ImageViewZoom.__init__(self, logger=logger, settings=settings,\n rgbmap=rgbmap,\n bindmap=bindmap, bindings=bindings)\n\n # Needed for UIMixin to propagate events correctly\n self.objects = [self.private_canvas]", "metadata": "root.CanvasView.__init__", "header": "['class', 'CanvasView', '(', 'ImageViewZoom', ')', ':', '___EOS___']", "index": 609 }, { "content": " def set_canvas(self, canvas, private_canvas=None):\n super(CanvasView, self).set_canvas(canvas,\n private_canvas=private_canvas)\n\n self.objects[0] = self.private_canvas", "metadata": "root.CanvasView.set_canvas", "header": "['class', 'CanvasView', '(', 'ImageViewZoom', ')', ':', '___EOS___']", "index": 618 } ]

[ { "span": "import sys, re", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 14 }, { "span": "import numpy", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 12 }, { "span": "import threading", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 16 }, { "span": "import math", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 11 }, { "span": "from matplotlib.image import FigureImage", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 40 }, { "span": "from matplotlib.figure import Figure", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 36 }, { "span": "from ginga import Mixins, Bindings, colors", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 42 } ]

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[ { "content": " def update_metadata(self, loadbalancer, metadata, node=None):\n \"\"\"\n Updates the existing metadata with the supplied dictionary. If\n 'node' is supplied, the metadata for that node is updated instead\n of for the load balancer.\n \"\"\"\n # Get the existing metadata\n md = self.get_metadata(loadbalancer, raw=True)\n id_lookup = dict([(itm[\"key\"], itm[\"id\"]) for itm in md])\n metadata_list = []\n # Updates must be done individually\n for key, val in metadata.items():\n try:\n meta_id = id_lookup[key]\n if node:\n uri = \"/loadbalancers/%s/nodes/%s/metadata/%s\" % (\n utils.get_id(loadbalancer), utils.get_id(node),\n meta_id)\n else:\n uri = \"/loadbalancers/%s/metadata\" % utils.get_id(loadbalancer)\n req_body = {\"meta\": {\"value\": val}}\n resp, body = self.api.method_put(uri, body=req_body)\n except KeyError:\n # Not an existing key; add to metadata_list\n metadata_list.append({\"key\": key, \"value\": val})\n if metadata_list:\n # New items; POST them\n if node:\n uri = \"/loadbalancers/%s/nodes/%s/metadata\" % (\n utils.get_id(loadbalancer), utils.get_id(node))\n else:\n uri = \"/loadbalancers/%s/metadata\" % utils.get_id(loadbalancer)\n req_body = {\"metadata\": metadata_list}\n resp, body = self.api.method_post(uri, body=req_body)", "metadata": "root.CloudLoadBalancerManager.update_metadata", "header": "['class', 'CloudLoadBalancerManager', '(', 'BaseManager', ')', ':', '___EOS___']", "index": 838 } ]

[ { "span": "resp,", "start_line": 859, "start_column": 16, "end_line": 859, "end_column": 20 }, { "span": "body ", "start_line": 859, "start_column": 22, "end_line": 859, "end_column": 26 } ]

[ { "span": "resp,", "start_line": 871, "start_column": 12, "end_line": 871, "end_column": 16 }, { "span": "body ", "start_line": 871, "start_column": 18, "end_line": 871, "end_column": 22 } ]

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[ { "content": "\"\"\"\nSample JSON responses pulled from Google Places API.\n\"\"\"\n\nPLACES_QUERY_RESPONSE = {\n \"html_attributions\" : [\n \"Listings by \\u003ca href=\\\"http://www.yellowpages.com.au/\\\"\\u003eYellow Pages\\u003c/a\\u003e\"\n ],\n \"results\" : [\n {\n \"geometry\" : {\n \"location\" : {\n \"lat\" : -33.8719830,\n \"lng\" : 151.1990860\n }\n },\n \"icon\" : \"http://maps.gstatic.com/mapfiles/place_api/icons/restaurant-71.png\",\n \"id\" : \"677679492a58049a7eae079e0890897eb953d79b\",\n \"name\" : \"Zaaffran Restaurant - BBQ and GRILL, Darling Harbour\",\n \"rating\" : 3.90,\n \"reference\" : \"CpQBjAAAAFAOaZhKjoDYfDsnISY6p4DKgdtrXTLJBhYsF0WnLBrkLHN3LdLpxc9VsbQKfbtg87nnDsl-SdCKT60Vs4Sxe_lCNCgRBxgq0JBBj8maNZ9pEp_LWjq8O-shdjh-LexdN5o-ZYLVBXhqX2az4TFvuOqme0eRirqMyatKgfn9nuKEkKR2a5tfFQlMfSZSlbyoOxIQVffhpcBqaua-_Yb364wx9xoUC1I-81Wj7aBmSmkctXv_YE7jqgQ\",\n \"place_id\": \"ChIJfZmx2Jxw44kR11GqlDbYxxx\",\n \"types\" : [ \"restaurant\", \"food\", \"establishment\" ],\n \"vicinity\" : \"Harbourside Centre 10 Darling Drive, Darling Harbour, Sydney\"\n },\n {\n \"geometry\" : {\n \"location\" : {\n \"lat\" : -33.8721970,\n \"lng\" : 151.1987820\n }\n },\n \"icon\" : \"http://maps.gstatic.com/mapfiles/place_api/icons/restaurant-71.png\",\n \"id\" : \"27ea39c8fed1c0437069066b8dccf958a2d06f19\",\n \"name\" : \"Criniti's\",\n \"rating\" : 3.10,\n \"reference\" : \"CmRgAAAAm4ajUz0FWaV2gB5mBbdIFhg-Jn98p1AQOrr1QxUWh7Q0nhEUhZL-hY9L4l5ifvRfGttf_gyBpSsGaxMjnr_pcPGUIQKES0vScLQpwM7jsS3BQKB83G9B_SlJFcRuD5dDEhCoNxepsgfJ5YSuXlYjVo9tGhQaKigmZ0WQul__A702AiH3WIy6-A\",\n \"place_id\": \"ChIJfZmx2Jxw44kR11GqlDbYsss\",\n \"types\" : [ \"restaurant\", \"food\", \"establishment\" ],\n \"vicinity\" : \"231/10 Darling Dr, DARLING HARBOUR\"\n },\n {\n \"geometry\" : {\n \"location\" : {\n \"lat\" : -33.8720340,\n \"lng\" : 151.198540\n }\n },\n \"icon\" : \"http://maps.gstatic.com/mapfiles/place_api/icons/restaurant-71.png\",\n \"id\" : 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[ { "content": " def test_11_package_relationship_post(self):\n res = self.c.package_relationship_register_get('annakarenina')\n assert self.c.last_status == 200, self.c.last_status\n assert not self.c.last_message, self.c.last_body\n\n # create relationship\n res = self.c.package_relationship_entity_post('annakarenina', 'child_of', 'warandpeace', 'some comment')\n try:\n assert self.c.last_status == 201, self.c.last_status\n finally:\n self.delete_relationships()", "metadata": "root.TestCkanClient.test_11_package_relationship_post", "header": "['class', 'TestCkanClient', '(', 'CkanServerCase', ')', ':', '___EOS___']", "index": 273 }, { "content": " def test_12_package_relationship_get(self):\n # create relationship\n res = self.c.package_relationship_entity_post('annakarenina', 'child_of', 'warandpeace', 'some comment')\n \n # read relationship\n try:\n res = self.c.package_relationship_register_get('annakarenina')\n assert self.c.last_status == 200, self.c.last_status\n rels = self.c.last_message\n assert len(rels) == 1, rels\n assert rels[0]['subject'] == 'annakarenina', rels[0]\n assert rels[0]['object'] == 'warandpeace', rels[0]\n assert rels[0]['type'] == 'child_of', rels[0]\n assert rels[0]['comment'] == 'some comment', rels[0]\n finally:\n self.delete_relationships()", "metadata": "root.TestCkanClient.test_12_package_relationship_get", "header": "['class', 'TestCkanClient', '(', 'CkanServerCase', ')', ':', '___EOS___']", "index": 285 }, { "content": " def test_13_package_relationship_put(self):\n # create relationship\n res = self.c.package_relationship_entity_post('annakarenina', 'child_of', 'warandpeace', 'some comment')\n # update relationship\n try:\n res = self.c.package_relationship_entity_put('annakarenina', 'child_of', 'warandpeace', 'new comment')\n assert self.c.last_status == 200, self.c.last_status\n\n # read relationship\n res = self.c.package_relationship_register_get('annakarenina')\n assert self.c.last_status == 200, self.c.last_status\n rels = self.c.last_message\n assert len(rels) == 1, rels\n assert rels[0]['comment'] == 'new comment', rels[0]\n finally:\n self.delete_relationships()", "metadata": "root.TestCkanClient.test_13_package_relationship_put", "header": "['class', 'TestCkanClient', '(', 'CkanServerCase', ')', ':', '___EOS___']", "index": 302 }, { "content": " def test_14_package_relationship_delete(self):\n # create relationship\n res = self.c.package_relationship_entity_post('annakarenina', 'child_of', 'warandpeace', 'some comment')\n try:\n self.c.package_relationship_entity_delete('annakarenina',\n 'child_of', 'warandpeace')\n\n # read relationship gives 404\n assert_raises(CkanApiError,\n self.c.package_relationship_register_get,\n 'annakarenina', 'child_of', 'warandpeace')\n assert self.c.last_status == 404, self.c.last_status\n\n # and register of relationships is blank\n res = self.c.package_relationship_register_get('annakarenina', 'relationships', 'warandpeace')\n assert self.c.last_status == 200, self.c.last_status\n assert not res, res\n finally:\n self.delete_relationships()", "metadata": "root.TestCkanClient.test_14_package_relationship_delete", "header": "['class', 'TestCkanClient', '(', 'CkanServerCase', ')', ':', '___EOS___']", "index": 319 } ]

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[ { "content": " @attr('dashboards')\n def test_dash(self):\n graph = {\n \"title\": \"test metric graph\",\n \"definition\":\n {\n \"requests\": [{\"q\": \"testing.metric.1{host:blah.host.1}\"}],\n \"viz\": \"timeseries\",\n }\n }\n\n dash_id = dog.create_dashboard('api dash', 'my api dash', [graph])\n remote_dash = dog.dashboard(dash_id)\n\n eq('api dash', remote_dash['title'])\n eq('my api dash', remote_dash['description'])\n eq(graph['definition']['requests'], remote_dash['graphs'][0]['definition']['requests'])\n\n graph = {\n \"title\": \"updated test metric graph\",\n \"definition\": {\n \"requests\": [{\"q\": \"testing.metric.1{host:blah.host.1}\"}],\n \"viz\": \"timeseries\",\n }\n }\n\n dash_id = dog.update_dashboard(dash_id, 'updated api dash',\n 'my updated api dash', [graph],\n template_variables=['foo', 'bar'])\n\n # Query and ensure all is well.\n remote_dash = dog.dashboard(dash_id)\n\n eq('updated api dash', remote_dash['title'])\n eq('my updated api dash', remote_dash['description'])\n self.assertEqual([\n {'default': None, 'name': 'foo', 'prefix': None},\n {'default': None, 'name': 'bar', 'prefix': None},\n ], remote_dash['template_variables'])\n\n p = graph['definition']['requests']\n eq(p, remote_dash['graphs'][0]['definition']['requests'])\n\n # Query all dashboards and make sure it's in there.\n\n dashes = dog.dashboards()\n ids = [dash[\"id\"] for dash in dashes]\n assert dash_id in ids or str(dash_id) in ids\n\n dog.delete_dashboard(dash_id)\n\n try:\n d = dog.dashboard(dash_id)\n except:\n pass\n else:\n # the previous get *should* throw an exception\n assert False", "metadata": "root.TestDatadog.test_dash", "header": "['class', 'TestDatadog', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 252 }, { "content": " def test_metrics(self):\n now = datetime.datetime.now()\n now_ts = int(time.mktime(now.timetuple()))\n\n dog.metric('test.metric.' + str(now_ts), 1, host=\"test.host.\" + str(now_ts))\n time.sleep(4)\n\n results = dog.search('metrics:test.metric.' + str(now_ts))\n # FIXME mattp: cache issue. move this test to server side.\n #assert len(results['metrics']) == 1, results\n\n matt_series = [\n (int(time.mktime((now - datetime.timedelta(minutes=25)).timetuple())), 5),\n (int(time.mktime((now - datetime.timedelta(minutes=25)).timetuple())) + 1, 15),\n (int(time.mktime((now - datetime.timedelta(minutes=24)).timetuple())), 10),\n (int(time.mktime((now - datetime.timedelta(minutes=23)).timetuple())), 15),\n (int(time.mktime((now - datetime.timedelta(minutes=23)).timetuple())) + 1, 5),\n (int(time.mktime((now - datetime.timedelta(minutes=22)).timetuple())), 5),\n (int(time.mktime((now - datetime.timedelta(minutes=20)).timetuple())), 15),\n (int(time.mktime((now - datetime.timedelta(minutes=18)).timetuple())), 5),\n (int(time.mktime((now - datetime.timedelta(minutes=17)).timetuple())), 5),\n (int(time.mktime((now - datetime.timedelta(minutes=17)).timetuple())) + 1, 15),\n (int(time.mktime((now - datetime.timedelta(minutes=15)).timetuple())), 15),\n (int(time.mktime((now - datetime.timedelta(minutes=15)).timetuple())) + 1, 5),\n (int(time.mktime((now - datetime.timedelta(minutes=14)).timetuple())), 5),\n (int(time.mktime((now - datetime.timedelta(minutes=14)).timetuple())) + 1, 15),\n (int(time.mktime((now - datetime.timedelta(minutes=12)).timetuple())), 15),\n (int(time.mktime((now - datetime.timedelta(minutes=12)).timetuple())) + 1, 5),\n (int(time.mktime((now - datetime.timedelta(minutes=11)).timetuple())), 5),\n ]\n\n dog.metric('matt.metric', matt_series, host=\"matt.metric.host\")\n\n dog.metrics({\n 'test.metric1': [(1000000000, 1), (1000000000, 2)],\n 'test.metric2': [(1000000000, 2), (1000000000, 4)],\n })", "metadata": "root.TestDatadog.test_metrics", "header": "['class', 'TestDatadog', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 316 }, { "content": " def test_user_error(self):\n query = \"avg(last_1h):sum:system.net.bytes_rcvd{host:host0} > 100\"\n\n dog.swallow = True\n dog.json_responses = True\n\n alert = dog.alert(query)\n assert 'id' in alert, alert\n result = dog.update_alert(alert['id'], 'aaa', silenced=True)\n assert 'errors' in result, result\n\n dog.swallow = True\n dog.json_responses = False\n\n alert_id = dog.alert(query)\n assert alert_id == int(alert_id), alert_id\n result = dog.update_alert(alert_id, 'aaa', silenced=True)\n assert 'errors' in result, result\n\n dog.swallow = False\n dog.json_responses = False\n\n alert_id = dog.alert(query)\n assert alert_id == int(alert_id), alert_id\n try:\n result = dog.update_alert(alert_id, 'aaa', silenced=True)\n except ApiError, e:\n pass\n else:\n raise False, \"Should have raised an exception\"", "metadata": "root.TestDatadog.test_user_error", "header": "['class', 'TestDatadog', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 400 }, { "content": " @attr('monitor')\n def test_service_check(self):\n res = dog.service_check('check_pg', 'host0', 1,\n message='PG is WARNING', tags=['db:prod_data'])", "metadata": "root.TestDatadog.test_service_check", "header": "['class', 'TestDatadog', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 710 } ]

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[ { "content": "################################################################################\n#\n# MRC FGU Computational Genomics Group\n#\n# $Id$\n#\n# Copyright (C) 2009 Andreas Heger\n#\n# This program is free software; you can redistribute it and/or\n# modify it under the terms of the GNU General Public License\n# as published by the Free Software Foundation; either version 2\n# of the License, or (at your option) any later version.\n#\n# This program is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n# GNU General Public License for more details.\n#\n# You should have received a copy of the GNU General Public License\n# along with this program; if not, write to the Free Software\n# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.\n#################################################################################\n'''\nStats2Plot.py - \n======================================================\n\n:Author: Andreas Heger\n:Release: $Id$\n:Date: |today|\n:Tags: Python\n\nCode\n----\n\n'''\nimport sys\nimport os\nimport string\nimport re\n\nfrom Rsdb2Plot import Rsdb2Plot\n\n \n \n \n \n \n \n \n\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Rsdb2Plot_test( Rsdb2Plot):\n\n", "metadata": "root.Rsdb2Plot_test", "header": "['module', '___EOS___']", "index": 42 }, { "content": " def __init__( self, grap ):\n Rsdb2Plot.__init__( self, graph )", "metadata": "root.Rsdb2Plot_test.__init__", "header": "['class', 'Rsdb2Plot_test', '(', 'Rsdb2Plot', ')', ':', '___EOS___']", "index": 44 }, { "content": " def ParseColumns( self, columns ):\n return columns", "metadata": "root.Rsdb2Plot_test.ParseColumns", "header": "['class', 'Rsdb2Plot_test', '(', 'Rsdb2Plot', ')', ':', '___EOS___']", "index": 47 }, { "content": "class Rsdb2Plot_clustering ( Rsdb2Plot ):\n\n\n", "metadata": "root.Rsdb2Plot_clustering", "header": "['module', '___EOS___']", "index": 51 }, { "content": " def __init__( self, graph, columns ):\n Rsdb2Plot.__init__( self, graph )\n self.mColumns = columns", "metadata": "root.Rsdb2Plot_clustering.__init__", "header": "['class', 'Rsdb2Plot_clustering', '(', 'Rsdb2Plot', ')', ':', '___EOS___']", "index": 53 }, { "content": " def ParseHeader( self, line ):\n columns = string.split( line[:-1], \"\\t\")\n result = []\n for col in self.mColumns:\n result.append( columns[col] )\n \n self.mGraph.SetLegend( result )", "metadata": "root.Rsdb2Plot_clustering.ParseHeader", "header": "['class', 'Rsdb2Plot_clustering', '(', 'Rsdb2Plot', ')', ':', '___EOS___']", "index": 57 }, { "content": " def ParseColumns( self, columns ):\n result = []\n for col in self.mColumns:\n result.append( columns[col] )\n return result", "metadata": "root.Rsdb2Plot_clustering.ParseColumns", "header": "['class', 'Rsdb2Plot_clustering', '(', 'Rsdb2Plot', ')', ':', '___EOS___']", "index": 65 } ]

[ { "span": "import sys", "start_line": 35, "start_column": 0, "end_line": 35, "end_column": 10 }, { "span": "import os", "start_line": 36, "start_column": 0, "end_line": 36, "end_column": 9 }, { "span": "import re", "start_line": 38, "start_column": 0, "end_line": 38, "end_column": 9 } ]

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[ { "content": " def test_init(self):\n repository = RepositoryFactory()\n form = forms.RepositoryTeamForm(repository=repository)", "metadata": "root.TestRepositoryTeamForm.test_init", "header": "['class', 'TestRepositoryTeamForm', '(', 'TestCase', ')', ':', '___EOS___']", "index": 23 } ]

[ { "span": "form ", "start_line": 25, "start_column": 8, "end_line": 25, "end_column": 12 } ]

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[ { "content": " def scan(self, uri, timeout=None):\n \"\"\"\n Scan the given uri collecting relevant metadata.\n\n :param uri: URI of the resource to scan.\n :type uri: string\n :param timeout: timeout for scanning a URI in ms. Defaults to the\n ``timeout`` value used when creating the scanner.\n :type timeout: int\n :return: A named tuple containing\n ``(uri, tags, duration, seekable, mime)``.\n ``tags`` is a dictionary of lists for all the tags we found.\n ``duration`` is the length of the URI in milliseconds, or\n :class:`None` if the URI has no duration. ``seekable`` is boolean.\n indicating if a seek would succeed.\n \"\"\"\n timeout = int(timeout or self._timeout_ms)\n tags, duration, seekable, mime = None, None, None, None\n pipeline, signals = _setup_pipeline(uri, self._proxy_config)\n\n try:\n _start_pipeline(pipeline)\n tags, mime, have_audio, duration = _process(pipeline, timeout)\n seekable = _query_seekable(pipeline)\n finally:\n signals.clear()\n pipeline.set_state(Gst.State.NULL)\n del pipeline\n\n return _Result(uri, tags, duration, seekable, mime, have_audio)", "metadata": "root.Scanner.scan", "header": "['class', 'Scanner', '(', 'object', ')', ':', '___EOS___']", "index": 41 } ]

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[ { "span": "tags,", "start_line": 63, "start_column": 12, "end_line": 63, "end_column": 16 }, { "span": "mime,", "start_line": 63, "start_column": 18, "end_line": 63, "end_column": 22 }, { "span": "duration ", "start_line": 63, "start_column": 36, "end_line": 63, "end_column": 44 }, { "span": "seekable ", "start_line": 64, "start_column": 12, "end_line": 64, "end_column": 20 } ]

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[ { "content": "import sys\nimport settings\nimport models.data\nimport datetime\nfrom google.appengine.ext import db\nsys.path.insert(0, settings.APP_ROOT_DIR + '/lib')\nfrom graphy.backends import google_chart_api\nfrom graphy import formatters\nfrom graphy import line_chart\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SalesChart(object):\n", "metadata": "root.SalesChart", "header": "['module', '___EOS___']", "index": 10 }, { "content": "\tdef units_chart(self, pid):\n\t\toverall_chart = google_chart_api.LineChart()\n\n\t\tsales_query = db.Query(models.data.Sale)\n\t\tsales_query.filter('pid =', pid)\n\t\tsales_query.order('report_date')\n\t\tsales = []\n\t\tfor sale in sales_query:\n\t\t\tsales.append([sale.income_units, sale.report_date])\n\n\t\tif len(sales) == 0: return (None, None)\n\t\tsales, dates = zip(*sales)\n\n\t\t# Make dates readable\n\t\tdates = [date.strftime('%d %b') for date in dates]\n\n\t\t# Add sales line\n\t\toverall_chart.AddLine(sales, width=line_chart.LineStyle.THICK, label='Sales')\n\n\t\t# Determine if an upgrades line needs to be drawn\n\t\tsales_start = sales_query.get().report_date\n\t\t# Use settings file as the definitive source of upgrade start date because iTunes Connect sometimes reports false upgrade numbers\n\t\tversions = settings.PRODUCTS[pid]['versions']\n\t\tupgrades = []\n\t\tif len(versions) > 1:\n\t\t\t# Convert to datetime to allow for timedelta calculation\n\t\t\tupgrades_start = datetime.datetime.combine(versions[1]['date'], datetime.time(sales_start.hour, sales_start.minute))\n\t\t\tdifference_in_days = (upgrades_start - sales_start).days\n\n\t\t\tupgrades_query = db.Query(models.data.Upgrade)\n\t\t\tupgrades_query.filter('pid =', pid)\n\t\t\tupgrades_query.order('report_date')\n\t\t\tupgrades_query.filter('report_date >', upgrades_start)\n\n\t\t\t# Pad upgrades list with time before upgrade commenced\n\t\t\tfor i in range(0, difference_in_days):\n\t\t\t\tupgrades.append(0)\n\t\t\tfor upgrade in upgrades_query:\n\t\t\t\tupgrades.append(upgrade.income_units)\n\t\t\t# Add upgrades line\n\t\t\toverall_chart.AddLine(upgrades, width=line_chart.LineStyle.THICK, label='Upgrades')\n\n\t\t# Add horizontal labels\n\t\tmax_num_horizontal_labels = 15\n\t\tsegment_gap = 1\n\t\tif len(dates) > max_num_horizontal_labels:\n\t\t\tsegment_gap = len(dates) / max_num_horizontal_labels\n\n\t\toverall_chart.bottom.min = 0\n\t\toverall_chart.bottom.max = max_num_horizontal_labels\n\t\toverall_chart.bottom.labels = dates\n\t\toverall_chart.bottom.labels = dates[::segment_gap]\n\n\t\t# Add vertical labels\n\t\tmax_num_vertical_labels = 15\n\n\t\tmax_sales = 0\n\t\tmin_sales = 0\n\t\tmax_upgrades = 0\n\t\tmin_upgrades = 0\n\t\tif sales:\n\t\t\tmax_sales = max(sales)\n\t\t\tmin_sales = min(sales)\n\t\tif upgrades:\n\t\t\tmax_upgrades = max(upgrades)\n\t\t\tmin_upgrades = min(upgrades)\n\n\t\toverall_chart.left.max = max_upgrades if max_upgrades > max_sales else max_sales\n\t\toverall_chart.left.min = min_upgrades if min_upgrades < min_sales else min_sales\n\t\tvertical_labels = []\n\t\tsegment_gap = overall_chart.left.max / max_num_vertical_labels\n\t\tfor i in range(0, max_num_vertical_labels + 1):\n\t\t\tvertical_labels.append(i * segment_gap)\n\t\t\tif len(vertical_labels) == max_num_vertical_labels + 1: break\n\n\t\toverall_chart.left.labels = vertical_labels\n\t\toverall_chart.bottom.label_gridlines = True\n\n\t\t# Build concentrated chart if there is enough data for one\n\t\tconcentrated_chart = self.concentrated_units_chart(sales, upgrades, dates)\n\t\tif concentrated_chart != None:\n\t\t\tconcentrated_chart = concentrated_chart.display.Url(1000, 300)\n\n\t\treturn (overall_chart.display.Url(1000, 300), concentrated_chart)", "metadata": "root.SalesChart.units_chart", "header": "['class', 'SalesChart', '(', 'object', ')', ':', '___EOS___']", "index": 11 }, { "content": "\tdef concentrated_units_chart(self, sales, upgrades, dates):\n\t\t# Want results for the last 2 weeks\n\t\tconcentrated_result_set_num = 14\n\t\tconcentrated_chart = None\n\t\tif len(sales) > concentrated_result_set_num:\n\t\t\tconcentrated_chart = google_chart_api.LineChart()\n\t\t\t# Slice to create the line for the concentrated chart\n\t\t\tcalc_concentrated_result_set = lambda x: x[len(sales) - concentrated_result_set_num :len(sales)]\n\t\t\tsales_concentrated = calc_concentrated_result_set(sales)\n\t\t\tdates_concentrated = calc_concentrated_result_set(dates)\n\t\t\tupgrades_concentrated = calc_concentrated_result_set(upgrades)\n\n\t\t\tconcentrated_chart.AddLine(sales_concentrated, width=line_chart.LineStyle.THICK, label='Sales')\n\t\t\tif len(upgrades_concentrated) == concentrated_result_set_num - 1:\n\t\t\t\tconcentrated_chart.AddLine(upgrades_concentrated, width=line_chart.LineStyle.THICK, label='Upgrades')\n\n\t\t\tconcentrated_chart.left.min = 0\n\t\t\tmax_upgrades_concentrated = 0\n\t\t\tmax_sales_concentrated = 0\n\t\t\tif upgrades_concentrated:\n\t\t\t\tmax_upgrades_concentrated = max(upgrades_concentrated)\n\t\t\tif sales_concentrated:\n\t\t\t\tmax_sales_concentrated = max(sales_concentrated)\n\n\t\t\tconcentrated_chart.left.max = max_upgrades_concentrated if max_upgrades_concentrated > max_sales_concentrated else max_sales_concentrated\n\t\t\tsegment_gap = concentrated_chart.left.max / concentrated_result_set_num\n\t\t\tconcentrated_vertical_labels = []\n\n\t\t\tfor i in range(0, concentrated_result_set_num + 1):\n\t\t\t\tconcentrated_vertical_labels.append(i * segment_gap)\n\t\t\t\tif len(concentrated_vertical_labels) == concentrated_result_set_num + 1: break\n\t\t\tif concentrated_vertical_labels[-1] < concentrated_chart.left.max:\n\t\t\t\tnew_max = concentrated_vertical_labels[-1] + segment_gap\n\t\t\t\tconcentrated_vertical_labels.append(new_max)\n\t\t\t\tconcentrated_chart.left.max = new_max\n\n\t\t\tconcentrated_chart.left.labels = concentrated_vertical_labels\n\t\t\tconcentrated_chart.bottom.labels = dates_concentrated\n\t\t\tconcentrated_chart.left.label_gridlines = True\n\t\t\tconcentrated_chart.bottom.label_gridlines = True\n\t\t\treturn concentrated_chart\n\t\telse:\n\t\t\treturn None", "metadata": "root.SalesChart.concentrated_units_chart", "header": "['class', 'SalesChart', '(', 'object', ')', ':', '___EOS___']", "index": 96 } ]

[ { "span": "from graphy import formatters", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 29 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "def eddy_correct(param):\n\n sct.printv('\\n\\n\\n\\n===================================================',param.verbose)\n sct.printv(' Running: eddy_correct', param.verbose)\n sct.printv('===================================================\\n',param.verbose)\n\n fname_data = param.fname_data\n min_norm = param.min_norm\n cost_function = param.cost_function_flirt\n verbose = param.verbose\n \n sct.printv(('Input File:'+ param.fname_data),verbose)\n sct.printv(('Bvecs File:' + param.fname_bvecs),verbose)\n \n #Extract path, file and extension\n path_data, file_data, ext_data = sct.extract_fname(fname_data)\n \n if param.mat_eddy=='': param.mat_eddy= 'mat_eddy/'\n if not os.path.exists(param.mat_eddy): os.makedirs(param.mat_eddy)\n mat_eddy = param.mat_eddy\n \n #Schedule file for FLIRT\n schedule_file = path_sct + '/flirtsch/schedule_TxTy_2mmScale.sch'\n sct.printv(('\\n.. Schedule file: '+ schedule_file),verbose)\n\n #Swap X-Y dimension (to have X as phase-encoding direction)\n if param.swapXY==1:\n sct.printv('\\nSwap X-Y dimension (to have X as phase-encoding direction)',verbose)\n fname_data_new = 'tmp.data_swap'\n cmd = fsloutput + 'fslswapdim ' + fname_data + ' -y -x -z ' + fname_data_new\n status, output = sct.run(cmd,verbose)\n sct.printv(('\\n.. updated data file name: '+fname_data_new),verbose)\n else:\n fname_data_new = fname_data\n\n # Get size of data\n sct.printv('\\nGet dimensions data...',verbose)\n nx, ny, nz, nt, px, py, pz, pt = Image(fname_data).dim\n sct.printv('.. '+str(nx)+' x '+str(ny)+' x '+str(nz)+' x '+str(nt),verbose)\n\n # split along T dimension\n sct.printv('\\nSplit along T dimension...',verbose)\n from sct_image import split_data\n im_to_split = Image(fname_data_new+'.nii')\n im_split_list = split_data(im_to_split, 3)\n for im in im_split_list:\n im.save()\n\n # cmd = fsloutput + 'fslsplit ' + fname_data_new + ' ' + file_data + '_T'\n # status, output = sct.run(cmd,verbose)\n\n #Slice-wise or Volume based method\n if param.slicewise:\n nb_loops = nz\n file_suffix=[]\n for iZ in range(nz):\n file_suffix.append('_Z'+ str(iZ).zfill(4))\n else:\n nb_loops = 1\n file_suffix = ['']\n\n # Identify pairs of opposite gradient directions\n sct.printv('\\nIdentify pairs of opposite gradient directions...',verbose)\n\n # Open bvecs file\n sct.printv('\\nOpen bvecs file...',verbose)\n bvecs = []\n with open(param.fname_bvecs) as f:\n for line in f:\n bvecs_new = map(float, line.split())\n bvecs.append(bvecs_new)\n\n # Check if bvecs file is nx3\n if not len(bvecs[0][:]) == 3:\n sct.printv('.. WARNING: bvecs file is 3xn instead of nx3. Consider using sct_dmri_transpose_bvecs.',verbose)\n sct.printv('Transpose bvecs...',verbose)\n # transpose bvecs\n bvecs = zip(*bvecs)\n bvecs = np.array(bvecs)\n\n opposite_gradients_iT = []\n opposite_gradients_jT = []\n index_identified = []\n index_b0 = []\n for iT in range(nt-1):\n if np.linalg.norm(bvecs[iT,:])!=0:\n if iT not in index_identified:\n jT = iT+1\n if np.linalg.norm((bvecs[iT,:]+bvecs[jT,:]))<min_norm:\n sct.printv(('.. Opposite gradient for #'+str(iT)+' is: #'+str(jT)),verbose)\n opposite_gradients_iT.append(iT)\n opposite_gradients_jT.append(jT)\n index_identified.append(iT)\n else:\n index_b0.append(iT)\n sct.printv(('.. Opposite gradient for #'+str(iT)+' is: NONE (b=0)'),verbose)\n nb_oppositeGradients = len(opposite_gradients_iT)\n sct.printv(('.. Number of gradient directions: ' + str(2*nb_oppositeGradients) + ' (2*' + str(nb_oppositeGradients) + ')'),verbose)\n sct.printv('.. Index b=0: '+ str(index_b0),verbose)\n\n\n # =========================================================================\n #\tFind transformation\n # =========================================================================\n for iN in range(nb_oppositeGradients):\n i_plus = opposite_gradients_iT[iN]\n i_minus = opposite_gradients_jT[iN]\n\n sct.printv(('\\nFinding affine transformation between volumes #'+str(i_plus)+' and #'+str(i_minus)+' (' + str(iN)+'/'+str(nb_oppositeGradients)+')'),verbose)\n sct.printv('------------------------------------------------------------------------------------\\n',verbose)\n \n #Slicewise correction\n if param.slicewise:\n sct.printv('\\nSplit volumes across Z...',verbose)\n fname_plus = file_data + '_T' + str(i_plus).zfill(4)\n fname_plus_Z = file_data + '_T' + str(i_plus).zfill(4) + '_Z'\n im_plus = Image(fname_plus+'.nii')\n im_plus_split_list = split_data(im_plus, 2)\n for im_p in im_plus_split_list:\n im_p.save()\n # cmd = fsloutput + 'fslsplit ' + fname_plus + ' ' + fname_plus_Z + ' -z'\n # status, output = sct.run(cmd,verbose)\n\n fname_minus = file_data + '_T' + str(i_minus).zfill(4)\n fname_minus_Z = file_data + '_T' + str(i_minus).zfill(4) + '_Z'\n im_minus = Image(fname_minus+'.nii')\n im_minus_split_list = split_data(im_minus, 2)\n for im_m in im_minus_split_list:\n im_m.save() # cmd = fsloutput + 'fslsplit ' + fname_minus + ' ' + fname_minus_Z + ' -z'\n # status, output = sct.run(cmd,verbose)\n\n #loop across Z\n for iZ in range(nb_loops):\n fname_plus = file_data + '_T' + str(i_plus).zfill(4) + file_suffix[iZ]\n\n fname_minus = file_data + '_T' + str(i_minus).zfill(4) + file_suffix[iZ]\n #Find transformation on opposite gradient directions\n sct.printv('\\nFind transformation for each pair of opposite gradient directions...',verbose)\n fname_plus_corr = file_data + '_T' + str(i_plus).zfill(4) + file_suffix[iZ] + '_corr_'\n omat = 'mat_' + file_data + '_T' + str(i_plus).zfill(4) + file_suffix[iZ] + '.txt'\n cmd = fsloutput+'flirt -in '+fname_plus+' -ref '+fname_minus+' -paddingsize 3 -schedule '+schedule_file+' -verbose 2 -omat '+omat+' -cost '+cost_function+' -forcescaling'\n status, output = sct.run(cmd,verbose)\n\n file = open(omat)\n Matrix = np.loadtxt(file)\n file.close()\n M = Matrix[0:4,0:4]\n sct.printv(('.. Transformation matrix:\\n'+str(M)),verbose)\n sct.printv(('.. Output matrix file: '+omat),verbose)\n\n # Divide affine transformation by two\n sct.printv('\\nDivide affine transformation by two...',verbose)\n A = (M - np.identity(4))/2\n Mplus = np.identity(4)+A\n omat_plus = mat_eddy + 'mat.T' + str(i_plus) + '_Z' + str(iZ) + '.txt'\n file = open(omat_plus,'w')\n np.savetxt(omat_plus, Mplus, fmt='%.6e', delimiter=' ', newline='\\n', header='', footer='', comments='#')\n file.close()\n sct.printv(('.. Output matrix file (plus): '+omat_plus),verbose)\n\n Mminus = np.identity(4)-A\n omat_minus = mat_eddy + 'mat.T' + str(i_minus) + '_Z' + str(iZ) + '.txt'\n file = open(omat_minus,'w')\n np.savetxt(omat_minus, Mminus, fmt='%.6e', delimiter=' ', newline='\\n', header='', footer='', comments='#')\n file.close()\n sct.printv(('.. Output matrix file (minus): '+omat_minus),verbose)\n\n # =========================================================================\n #\tApply affine transformation\n # =========================================================================\n\n sct.printv('\\nApply affine transformation matrix',verbose)\n sct.printv('------------------------------------------------------------------------------------\\n',verbose)\n\n for iN in range(nb_oppositeGradients):\n for iFile in range(2):\n if iFile==0:\n i_file = opposite_gradients_iT[iN]\n else:\n i_file = opposite_gradients_jT[iN]\n\n for iZ in range(nb_loops):\n fname = file_data + '_T' + str(i_file).zfill(4) + file_suffix[iZ]\n fname_corr = fname + '_corr_' + '__div2'\n omat = mat_eddy + 'mat.T' + str(i_file) + '_Z' + str(iZ) + '.txt'\n cmd = fsloutput + 'flirt -in ' + fname + ' -ref ' + fname + ' -out ' + fname_corr + ' -init ' + omat + ' -applyxfm -paddingsize 3 -interp ' + param.interp\n status, output = sct.run(cmd,verbose)\n\n \n # =========================================================================\n #\tMerge back across Z\n # =========================================================================\n\n sct.printv('\\nMerge across Z',verbose)\n sct.printv('------------------------------------------------------------------------------------\\n',verbose)\n\n for iN in range(nb_oppositeGradients):\n i_plus = opposite_gradients_iT[iN]\n fname_plus_corr = file_data + '_T' + str(i_plus).zfill(4) + '_corr_' + '__div2'\n cmd = fsloutput + 'fslmerge -z ' + fname_plus_corr\n\n for iZ in range(nz):\n fname_plus_Z_corr = file_data + '_T' + str(i_plus).zfill(4) + file_suffix[iZ] + '_corr_' + '__div2'\n cmd = cmd + ' ' + fname_plus_Z_corr\n status, output = sct.run(cmd,verbose)\n\n i_minus = opposite_gradients_jT[iN]\n fname_minus_corr = file_data + '_T' + str(i_minus).zfill(4) + '_corr_' + '__div2'\n cmd = fsloutput + 'fslmerge -z ' + fname_minus_corr\n\n for iZ in range(nz):\n fname_minus_Z_corr = file_data + '_T' + str(i_minus).zfill(4) + file_suffix[iZ] + '_corr_' + '__div2'\n cmd = cmd + ' ' + fname_minus_Z_corr\n status, output = sct.run(cmd,verbose)\n\n # =========================================================================\n #\tMerge files back\n # =========================================================================\n sct.printv('\\nMerge back across T...',verbose)\n sct.printv('------------------------------------------------------------------------------------\\n',verbose)\n \n fname_data_corr = param.output_path + file_data + '_eddy'\n cmd = fsloutput + 'fslmerge -t ' + fname_data_corr\n path_tmp = os.getcwd()\n for iT in range(nt):\n if os.path.isfile((path_tmp + '/' + file_data + '_T' + str(iT).zfill(4) + '_corr_' + '__div2.nii')):\n fname_data_corr_3d = file_data + '_T' + str(iT).zfill(4) + '_corr_' + '__div2'\n elif iT in index_b0:\n fname_data_corr_3d = file_data + '_T' + str(iT).zfill(4)\n \n cmd = cmd + ' ' + fname_data_corr_3d\n status, output = sct.run(cmd,verbose)\n\n #Swap back X-Y dimensions\n if param.swapXY==1:\n fname_data_final = fname_data\n sct.printv('\\nSwap back X-Y dimensions',verbose)\n cmd = fsloutput_temp + 'fslswapdim ' + fname_data_corr + ' -y -x -z ' + fname_data_final\n status, output = sct.run(cmd,verbose)\n else:\n fname_data_final = fname_data_corr\n\n sct.printv(('... File created: '+fname_data_final),verbose)\n \n sct.printv('\\n===================================================',verbose)\n sct.printv(' Completed: eddy_correct',verbose)\n sct.printv('===================================================\\n\\n\\n',verbose)", "metadata": "root.eddy_correct", "header": "['module', '___EOS___']", "index": 118 } ]

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[ { "span": "fname_plus_corr ", "start_line": 316, "start_column": 8, "end_line": 316, "end_column": 23 }, { "span": "status,", "start_line": 356, "start_column": 8, "end_line": 356, "end_column": 14 }, { "span": "output ", "start_line": 356, "start_column": 16, "end_line": 356, "end_column": 22 } ]

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[ { "content": "try:\n import locale\nexcept:\n pass\n\nwithMessagingMenu = False\ntry:\n from gi.repository import MessagingMenu\n from gi.repository import Notify\n withMessagingMenu = True\nexcept ImportError:\n MessagingMenu = None\nimport bitcoin\nfrom addresses import *\nimport shared\nfrom electrumfirst import *\nimport sys\nfrom time import strftime, localtime, gmtime\nimport time\nimport os\nimport hashlib\nfrom pyelliptic.openssl import OpenSSL\nimport pickle\nimport platform\nimport debug\nfrom debug import logger\nimport subprocess\nimport datetime\nimport random\nimport shelve\nimport threading\nimport multiprocessing\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class electrumfirst(QtGui.QMainWindow):", "metadata": "root.electrumfirst", "header": "['module', '___EOS___']", "index": 32 }, { "content": " def __init__(self, parent=None):\n QtGui.QWidget.__init__(self, parent)\n self.ui = Ui_MainWindow()\n self.ui.setupUi(self)\n self.parent = parent\n QtCore.QObject.connect(self.ui.startelectrum, QtCore.SIGNAL(\"clicked()\"), self.click_elec);\n QtCore.QObject.connect(self.ui.startbxb, QtCore.SIGNAL(\"clicked()\"), self.click_bxb);\n QtCore.QObject.connect(self.ui.bitcoinqt, QtCore.SIGNAL(\"clicked()\"), self.click_bitcoinqt);", "metadata": "root.electrumfirst.__init__", "header": "['class', 'electrumfirst', '(', 'QtGui', '.', 'QMainWindow', ')', ':', '___EOS___']", "index": 33 }, { "content": " def click_elec(self):\n subprocess.Popen([os.getcwd()+'/electrum/bin/electrum.exe'], shell=True)\n settings = shelve.open(\"settings.slv\")\n settings[\"electrumon\"] = True\n settings.close()\n os._exit(0)", "metadata": "root.electrumfirst.click_elec", "header": "['class', 'electrumfirst', '(', 'QtGui', '.', 'QMainWindow', ')', ':', '___EOS___']", "index": 41 }, { "content": " def click_bxb(self):\n settings = shelve.open(\"settings.slv\")\n settings[\"electrumon\"] = True\n settings.close()\n restart_program()", "metadata": "root.electrumfirst.click_bxb", "header": "['class', 'electrumfirst', '(', 'QtGui', '.', 'QMainWindow', ')', ':', '___EOS___']", "index": 47 }, { "content": " def click_bitcoinqt(self):\n settings = shelve.open(\"settings.slv\")\n settings[\"electrumon\"] = False\n settings.close()\n restart_program()", "metadata": "root.electrumfirst.click_bitcoinqt", "header": "['class', 'electrumfirst', '(', 'QtGui', '.', 'QMainWindow', ')', ':', '___EOS___']", "index": 52 }, { "content": "def run():\n app = QtGui.QApplication(sys.argv)\n myapp = electrumfirst()\n myapp.show()\n sys.exit(app.exec_())", "metadata": "root.run", "header": "['module', '___EOS___']", "index": 57 }, { "content": "def restart_program():\n \"\"\"Restarts the current program.\n Note: this function does not return. Any cleanup action (like\n saving data) must be done before calling this function.\"\"\"\n python = sys.executable\n os.execl(python, python, * sys.argv)", "metadata": "root.restart_program", "header": "['module', '___EOS___']", "index": 63 } ]

[ { "span": "import locale", "start_line": 1, "start_column": 4, "end_line": 1, "end_column": 17 }, { "span": "from gi.repository import MessagingMenu", "start_line": 7, "start_column": 4, "end_line": 7, "end_column": 43 }, { "span": "from gi.repository import Notify", "start_line": 8, "start_column": 4, "end_line": 8, "end_column": 36 }, { "span": "import bitcoin", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 14 }, { "span": "import shared", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 13 }, { "span": "from time import strftime, localtime, gmtime", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 44 }, { "span": "import time", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 11 }, { "span": "import hashlib", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 14 }, { "span": "from pyelliptic.openssl import OpenSSL", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 38 }, { "span": "import pickle", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 13 }, { "span": "import platform", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 15 }, { "span": "import debug", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 12 }, { "span": "from debug import logger", "start_line": 25, "start_column": 0, "end_line": 25, "end_column": 24 }, { "span": "import datetime", "start_line": 27, "start_column": 0, "end_line": 27, "end_column": 15 }, { "span": "import random", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 13 }, { "span": "import threading", "start_line": 30, "start_column": 0, "end_line": 30, "end_column": 16 }, { "span": "import multiprocessing", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 22 } ]

[]

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[ { "content": "\"\"\"Blink Decorator.\"\"\"\n# blink.py\n# Mission Pinball Framework\n# Written by Brian Madden & Gabe Knuth\n# Released under the MIT License. (See license info at the end of this file.)\n\n# Documentation and more info at http://missionpinball.com/mpf\n\nimport pygame\nimport pygame.locals\nimport time\n\nfrom mpf.media_controller.core.display import Decorator\n\n\n\n# The MIT License (MIT)\n\n# Copyright (c) 2013-2015 Brian Madden and Gabe Knuth\n\n# Permission is hereby granted, free of charge, to any person obtaining a copy\n# of this software and associated documentation files (the \"Software\"), to deal\n# in the Software without restriction, including without limitation the rights\n# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell\n# copies of the Software, and to permit persons to whom the Software is\n# furnished to do so, subject to the following conditions:\n\n# The above copyright notice and this permission notice shall be included in\n# all copies or substantial portions of the Software.\n\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\n# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\n# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\n# THE SOFTWARE.\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Blink(Decorator):\n \"\"\"Blink decorator which causes the element its applied to to blink on and\n off.\n\n Args:\n parent_element: The DisplayElement object this decorator is applied to.\n on_secs: The number of seconds for the \"on\" portion of the blinking.\n Default is 0.2.\n off_secs: The number of seconds for the \"off\" porition of the blinking.\n Default is 0.2.\n repeats: The number of times you'd like this element to blink. A value\n of -1 means it will repeat forever.\n\n Attributes:\n parent_element: The DisplayElement object this decorator is applied to.\n on_secs: The number of seconds for the \"on\" portion of the blinking.\n off_secs: The number of seconds for the \"off\" porition of the blinking.\n repeats: The number of remaining blinks this element will do. A value\n of -1 means it will repeat forever.\n dirty: Boolean which specifies whether this decorator needs to apply\n an update to the parent_elemnet in this frame.\n current_state: 1 means this decorator is in the \"on\" phase of a blink,\n 0 means it's in the \"off\" phase of a blink.\n next_action_time: Real-world time of when the next state change of this\n decorator will be.\n \"\"\"\n\n\n", "metadata": "root.Blink", "header": "['module', '___EOS___']", "index": 15 }, { "content": " def __init__(self, parent_element, on_secs=.2, off_secs=.2, repeats=-1,\n **kwargs):\n self.next_action_time = 0\n self.current_state = 1\n self.on_secs = on_secs\n self.off_secs = off_secs\n self.repeats = repeats\n self.parent_element = parent_element", "metadata": "root.Blink.__init__", "header": "['class', 'Blink', '(', 'Decorator', ')', ':', '___EOS___']", "index": 42 }, { "content": " @property\n def dirty(self):\n if self.next_action_time <= time.time():\n return True\n else:\n return False", "metadata": "root.Blink.dirty", "header": "['class', 'Blink', '(', 'Decorator', ')', ':', '___EOS___']", "index": 51 }, { "content": " def update(self):\n \"\"\"Updates the parent_element if it's time to blink. Can safely be\n called often.\n\n Returns: True if this decorator made a change to the element that has to\n be re-blitted. False if no change.\n \"\"\"\n current_time = time.time()\n if self.next_action_time <= current_time:\n if self.current_state:\n self.parent_element.opacity = 0\n self.current_state = 0\n self.next_action_time = current_time + self.off_secs\n\n if self.repeats == 0:\n self.unload()\n elif self.repeats > 0:\n self.repeats -= 1\n\n else:\n self.current_state = 1\n self.next_action_time = current_time + self.on_secs\n self.parent_element.opacity = 255\n\n return True\n\n return False", "metadata": "root.Blink.update", "header": "['class', 'Blink', '(', 'Decorator', ')', ':', '___EOS___']", "index": 58 } ]

[ { "span": "import pygame", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 13 }, { "span": "import pygame.locals", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 20 } ]

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[ { "content": "#!/usr/bin/env python\nimport argparse\nfrom argparse import ArgumentParser\nfrom ConfigParser import RawConfigParser as ConfigParser\nimport os.path\n\nfrom topicexplorer import (init, prep, train, server, launch, notebook, demo,\n update, langspace)\nfrom topicexplorer.lib.util import is_valid_filepath\n\n\n\n\nif __name__ == '__main__':\n main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class ArgumentParserError(Exception): pass", "metadata": "root.ArgumentParserError", "header": "['module', '___EOS___']", "index": 10 }, { "content": "class ThrowingArgumentParser(argparse.ArgumentParser):", "metadata": "root.ThrowingArgumentParser", "header": "['module', '___EOS___']", "index": 12 }, { "content": " def error(self, message):\n raise ArgumentParserError(message)", "metadata": "root.ThrowingArgumentParser.error", "header": "['class', 'ThrowingArgumentParser', '(', 'argparse', '.', 'ArgumentParser', ')', ':', '___EOS___']", "index": 13 }, { "content": "def main():\n parser = ThrowingArgumentParser()\n benchmark_group = parser.add_mutually_exclusive_group()\n benchmark_group.add_argument('-t', '--time', help=\"Print execution time\",\n action='store_true')\n benchmark_group.add_argument('-p', '--profile', help=\"\"\"Profile the command.\n Optional filename saves results for use with snakeviz, pstats, or\n cprofilev. Automatically launches snakeviz, if installed.\"\"\",\n nargs='?', metavar='STATS_FILE')\n\n # Using add_subparsers(metavar) until argparse.SUPPRESS support is fixed.\n # See issue http://bugs.python.org/issue22848\n parsers = parser.add_subparsers(help=\"select a command\",\n parser_class=ArgumentParser,\n metavar='{version,demo,update,init,prep,train,launch,notebook}')\n version_parser = parsers.add_parser('version', help=\"Print the version and exit\")\n version_parser.set_defaults(func='version')\n\n # Init Parser\n parser_init = parsers.add_parser('init', help=\"Initialize the topic explorer\")\n init.populate_parser(parser_init)\n parser_init.set_defaults(func=\"init\")\n \n # Prep Parser\n parser_prep = parsers.add_parser('prep', help=\"Prep the corpus\", \n formatter_class=argparse.RawDescriptionHelpFormatter)\n prep.populate_parser(parser_prep)\n parser_prep.set_defaults(func=\"prep\")\n\n # Train Parser\n parser_train = parsers.add_parser('train', help=\"Train the LDA models\")\n train.populate_parser(parser_train)\n parser_train.set_defaults(func=\"train\")\n \n # Launch Parser\n parser_launch = parsers.add_parser('launch', help=\"Serve the trained LDA models\")\n launch.populate_parser(parser_launch)\n parser_launch.set_defaults(func=\"launch\")\n\n # Serve Parser\n parser_serve = parsers.add_parser('serve', \n help=\"Serve a single LDA model, helper for `vsm launch`,\"+\n \"rarely called directly\")\n server.populate_parser(parser_serve)\n parser_serve.set_defaults(func=\"serve\")\n \n # Notebook Parser\n parser_nb = parsers.add_parser('notebook', \n help=\"Create a set of IPython Notebooks\")\n notebook.populate_parser(parser_nb)\n parser_nb.set_defaults(func=\"notebook\")\n\n # Demo Parser\n parser_demo = parsers.add_parser('demo', \n help=\"Download and run the AP demo\")\n parser_demo.set_defaults(func=\"demo\")\n\n # Update Parser \n parser_update = parsers.add_parser('update', \n help=\"Update the Topic Explorer\")\n parser_update.set_defaults(func=\"update\")\n \n # Lang Space Parser \n parser_langspace = parsers.add_parser('langspace', \n help=\"Add spaces before unicode chars\")\n langspace.populate_parser(parser_langspace)\n parser_langspace.set_defaults(func=\"langspace\")\n\n # fancy arg validation for manually injecting tempfile to profile arg \n try:\n try: \n args = parser.parse_args()\n except ArgumentParserError as e:\n import sys\n new_args = sys.argv[1:]\n try:\n # If the error was thrown by the '-p' argument not having a\n # valid file, fix by manually injecting a nargs break\n profile = new_args.index('-p')\n\n if (len(new_args) > (profile + 1) and\n new_args[profile + 1] in parsers.choices.keys()):\n new_args.insert(profile + 1, '-')\n args = parser.parse_args(new_args)\n else:\n raise e\n except ValueError:\n raise e\n except ArgumentParserError as e:\n import sys\n # Check to see if error occurs with a subparser and cause the exception\n # to arise from the subparser instead\n for p in parsers.choices.keys():\n if p in sys.argv[1:]:\n subargs_idx = sys.argv.index(p) + 1\n subargs = sys.argv[subargs_idx:]\n subparser = locals()['parser_' + p]\n # this might cause an error in the subparser, in which case\n # we actually want to show that error first\n args = subparser.parse_args(subargs)\n \n # Use the default error mechanism for the master parser.\n # If the code gets here, it means the error was not in a subparser\n ArgumentParser.error(parser, e.message)\n\n if args.profile:\n if args.profile == '-':\n import tempfile\n temphandle, args.profile = tempfile.mkstemp(suffix='.prof', prefix='vsm.')\n print \"Saving benchmark data to\", args.profile\n\n from profilehooks import profile\n benchmark = lambda fn: profile(fn, immediate=True, filename=args.profile, stdout=None)\n\n elif args.time:\n from profilehooks import timecall\n benchmark = lambda fn: timecall(fn, immediate=False)\n else:\n benchmark = lambda fn: fn\n\n if args.func == 'version':\n from topicexplorer.version import __pretty_version__\n print __pretty_version__,\n\n elif args.func == 'init':\n args.config_file = benchmark(init.main)(args)\n \n print \"\\nTIP: Only initalizing corpus object and config file.\"\n print \" Next prepare the corpus using:\"\n print \" vsm prep\", args.config_file\n print \" Or skip directly to training LDA models using:\"\n print \" vsm train\", args.config_file\n\n elif args.func == 'prep':\n benchmark(prep.main)(args)\n \n print \"\\nTIP: Train the LDA models with:\"\n print \" vsm train\", args.config_file\n\n elif args.func == 'train':\n benchmark(train.main)(args)\n\n if not args.dry_run:\n print \"\\nTIP: launch the topic explorer with:\"\n print \" vsm launch\", args.config_file\n print \" or the notebook server with:\"\n print \" vsm notebook\", args.config_file\n\n elif args.func == 'launch':\n benchmark(launch.main)(args)\n\n elif args.func == 'serve':\n benchmark(server.main)(args)\n\n elif args.func == 'notebook':\n benchmark(notebook.main)(args)\n\n elif args.func == 'demo':\n benchmark(demo.main)(args)\n\n elif args.func == 'update':\n benchmark(update.main)(args)\n\n elif args.func == 'langspace':\n benchmark(langspace.main)(args)\n\n if args.profile:\n try:\n import snakeviz.cli\n print \"\\n\\n\"\n snakeviz.cli.main([args.profile])\n except ImportError:\n print \"\"\"\\nSnakeviz is not installed. Install with `pip install snakeviz`, \n then run `snakeviz {}`.\"\"\".format(args.profile)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 16 } ]

[ { "span": "from ConfigParser import RawConfigParser as ConfigParser", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 56 }, { "span": "import os.path", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 14 }, { "span": "from topicexplorer.lib.util import is_valid_filepath", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 52 } ]

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[ { "content": "#!/usr/bin/env python\nimport sys\nimport rospy\nimport rostest\nimport unittest\n\nfrom time import sleep\n\nfrom rosbridge_library.internal.publishers import *\nfrom rosbridge_library.internal.topics import *\nfrom rosbridge_library.internal.message_conversion import FieldTypeMismatchException\nfrom std_msgs.msg import String, Int32\n\n\n\n\nPKG = 'rosbridge_library'\nNAME = 'test_publisher_manager'\nif __name__ == '__main__':\n rostest.unitrun(PKG, NAME, TestPublisherManager)\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestPublisherManager(unittest.TestCase):\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.TestPublisherManager", "header": "['module', '___EOS___']", "index": 14 }, { "content": " def setUp(self):\n rospy.init_node(\"test_publisher_manager\")", "metadata": "root.TestPublisherManager.setUp", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 16 }, { "content": " def is_topic_published(self, topicname):\n return topicname in dict(rospy.get_published_topics()).keys()", "metadata": "root.TestPublisherManager.is_topic_published", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 19 }, { "content": " def test_register_publisher(self):\n \"\"\" Register a publisher on a clean topic with a good msg type \"\"\"\n topic = \"/test_register_publisher\"\n msg_type = \"std_msgs/String\"\n client = \"client_test_register_publisher\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n\n manager.unregister(client, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_publisher", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 22 }, { "content": " def test_register_publisher_multiclient(self):\n topic = \"/test_register_publisher_multiclient\"\n msg_type = \"std_msgs/String\"\n client1 = \"client_test_register_publisher_1\"\n client2 = \"client_test_register_publisher_2\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client1, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.register(client2, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client1, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client2, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_publisher_multiclient", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 38 }, { "content": " def test_register_publisher_conflicting_types(self):\n topic = \"/test_register_publisher_conflicting_types\"\n msg_type = \"std_msgs/String\"\n msg_type_bad = \"std_msgs/Int32\"\n client = \"client_test_register_publisher_conflicting_types\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n\n self.assertRaises(TypeConflictException, manager.register, \"client2\", topic, msg_type_bad)", "metadata": "root.TestPublisherManager.test_register_publisher_conflicting_types", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 59 }, { "content": " def test_register_multiple_publishers(self):\n topic1 = \"/test_register_multiple_publishers1\"\n topic2 = \"/test_register_multiple_publishers2\"\n msg_type = \"std_msgs/String\"\n client = \"client_test_register_multiple_publishers\"\n\n self.assertFalse(topic1 in manager._publishers)\n self.assertFalse(topic2 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic1))\n self.assertFalse(self.is_topic_published(topic2))\n manager.register(client, topic1, msg_type)\n self.assertTrue(topic1 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic1))\n self.assertFalse(topic2 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic2))\n manager.register(client, topic2, msg_type)\n self.assertTrue(topic1 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic1))\n self.assertTrue(topic2 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic2))\n\n manager.unregister(client, topic1)\n self.assertFalse(topic1 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic1))\n self.assertTrue(topic2 in manager._publishers)\n self.assertTrue(self.is_topic_published(topic2))\n\n manager.unregister(client, topic2)\n self.assertFalse(topic1 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic1))\n self.assertFalse(topic2 in manager._publishers)\n self.assertFalse(self.is_topic_published(topic2))", "metadata": "root.TestPublisherManager.test_register_multiple_publishers", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 73 }, { "content": " def test_register_no_msgtype(self):\n topic = \"/test_register_no_msgtype\"\n client = \"client_test_register_no_msgtype\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n self.assertRaises(TopicNotEstablishedException, manager.register, client, topic)", "metadata": "root.TestPublisherManager.test_register_no_msgtype", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 106 }, { "content": " def test_register_infer_topictype(self):\n topic = \"/test_register_infer_topictype\"\n client = \"client_test_register_infer_topictype\"\n\n self.assertFalse(self.is_topic_published(topic))\n\n rospy.Publisher(topic, String)\n\n self.assertTrue(self.is_topic_published(topic))\n self.assertFalse(topic in manager._publishers)\n manager.register(client, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n\n manager.unregister(client, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_infer_topictype", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 114 }, { "content": " def test_register_multiple_notopictype(self):\n topic = \"/test_register_multiple_notopictype\"\n msg_type = \"std_msgs/String\"\n client1 = \"client_test_register_multiple_notopictype_1\"\n client2 = \"client_test_register_multiple_notopictype_2\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n manager.register(client1, topic, msg_type)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.register(client2, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client1, topic)\n self.assertTrue(topic in manager._publishers)\n self.assertTrue(self.is_topic_published(topic))\n manager.unregister(client2, topic)\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))", "metadata": "root.TestPublisherManager.test_register_multiple_notopictype", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 132 }, { "content": " def test_publish_not_registered(self):\n topic = \"/test_publish_not_registered\"\n msg = {\"data\": \"test publish not registered\"}\n client = \"client_test_publish_not_registered\"\n\n self.assertFalse(topic in manager._publishers)\n self.assertFalse(self.is_topic_published(topic))\n self.assertRaises(TopicNotEstablishedException, manager.publish, client, topic, msg)", "metadata": "root.TestPublisherManager.test_publish_not_registered", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 153 }, { "content": " def test_publisher_manager_publish(self):\n \"\"\" Make sure that publishing works \"\"\"\n topic = \"/test_publisher_manager_publish\"\n msg = {\"data\": \"test publisher manager publish\"}\n client = \"client_test_publisher_manager_publish\"\n\n received = {\"msg\": None}\n\n def cb(msg):\n received[\"msg\"] = msg\n\n rospy.Subscriber(topic, String, cb)\n manager.publish(client, topic, msg)\n sleep(0.5)\n\n self.assertEqual(received[\"msg\"].data, msg[\"data\"])", "metadata": "root.TestPublisherManager.test_publisher_manager_publish", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 162 }, { "content": " def test_publisher_manager_bad_publish(self):\n \"\"\" Make sure that bad publishing fails \"\"\"\n topic = \"/test_publisher_manager_bad_publish\"\n client = \"client_test_publisher_manager_bad_publish\"\n msg_type = \"std_msgs/String\"\n msg = {\"data\": 3}\n\n manager.register(client, topic, msg_type)\n self.assertRaises(FieldTypeMismatchException, manager.publish, client, topic, msg)", "metadata": "root.TestPublisherManager.test_publisher_manager_bad_publish", "header": "['class', 'TestPublisherManager', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 179 } ]

[ { "span": "import sys", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 10 }, { "span": "from std_msgs.msg import String, Int32", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 38 } ]

[]

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[ { "content": "def f():\n def g():\n pass", "metadata": "root.f", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "g(", "start_line": 1, "start_column": 8, "end_line": 1, "end_column": 9 } ]

[]

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[ { "content": " def __init__(self):\n gobject.GObject.__init__(self)\n\n self._wrapped_self = xpcom.server.WrapObject( \\\n self, interfaces.nsISHistoryListener)\n weak_ref = xpcom.client.WeakReference(self._wrapped_self)", "metadata": "root.HistoryListener.__init__", "header": "['class', 'HistoryListener', '(', 'gobject', '.', 'GObject', ')', ':', '___EOS___']", "index": 33 } ]

[ { "span": "weak_ref ", "start_line": 38, "start_column": 8, "end_line": 38, "end_column": 16 } ]

[]

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[ { "content": " def recordAction (self, action, credentials = [], urn = None):\n cred_ids = []\n self._actionLog.info(\"Sliver: %s LegExpAPI Action: %s\" % (urn, action))\n for cred in credentials:\n self._actionLog.info(\"Credential: %s\" % (cred))", "metadata": "root.AMLegExpAPI.recordAction", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 129 }, { "content": " def pub_create_slice(self, slice_id, project_name, project_description,\n slice_name, slice_description, controller_url,\n owner_email, owner_password,\n switch_slivers, **kwargs): \n '''\n Create an OpenFlow slice. \n \n The C{switch_sliver} list contains a dict for each switch to be added to the\n slice's topology. Each such dict has the following items:\n \n - C{datapath_id}: the switch's datapath id\n - C{flowspace}: an array of dicts describing the switch's flowspace\n Each such dict has the following keys:\n - C{id}: integer. Per clearinghouse unique identifier for the rule.\n - C{port_num_start}, C{port_num_end}: string. the port range for this \n flowspace\n - C{dl_src_start}, C{dl_src_end}: string. link layer address range in\n \"xx:xx:xx:xx:xx:xx\" format or '*' for wildcard\n - C{dl_dst_start}, C{dl_dst_end}: string. link layer address range in\n \"xx:xx:xx:xx:xx:xx\" format or '*' for wildcard\n - C{vlan_id_start}, C{vlan_id_end}: string. vlan id range or\n \"*\" for wildcard\n - C{nw_src_start}, C{nw_src_end}: string. network address range in \n \"x.x.x.x\" format or '*' for wildcard\n - C{nw_dst_start}, C{nw_dst_end}: string. network address range in\n \"x.x.x.x\" format or '*' for wildcard\n - C{nw_proto_start}, C{nw_proto_end}: string. network protocol range or\n \"*\" for wildcard\n - C{tp_src_start}, C{tp_src_end}: string. transport port range or \"*\"\n for wildcard\n - C{tp_dst_start}, C{tp_dst_end}: string. transport port range or \"*\"\n for wildcard\n\n The call returns a dict with the following items:\n - C{error_msg}: a summary error message or \"\" if no errors occurred.\n - C{switches}: a list of dicts with the following items:\n - C{datapath_id}: id of the switch that caused the error\n - C{error}: optional error msg for the switch\n - all other fields of the C{switch_sliver} dicts mentioned above\n (port_num, direction, ...). The values for these items are the error\n messages associated with each field.\n\n @param slice_id: a string that uniquely identifies the slice at the \n clearinghouse.\n @type slice_id: int\n \n @param project_name: a name for the project under which this slice \n is created\n @type project_name: string\n \n @param project_description: text describing the project\n @type project_description: string\n \n @param slice_name: Name for the slice\n @type slice_name: string\n \n @param slice_description: text describing the slice/experiment\n @type slice_description: string\n \n @param controller_url: The URL for the slice's OpenFlow controller specified\n as <transport>:<hostname>[:<port>], where:\n - tranport is 'tcp' ('ssl' will be added later)\n - hostname is the controller's hostname\n - port is the port on which the controller listens to openflow\n messages (defaults to 6633).\n @type controller_url: string\n \n @param owner_email: email of the person responsible for the slice\n @type owner_email: string\n \n @param owner_password: initial password the user can use to login to the\n FlowVisor Web interface. Will need to be changed on initial login.\n @type owner_password: string\n \n @param switch_slivers: description of the topology and flowspace for slice\n @type switch_slivers: list of dicts\n \n @param kwargs: will contain additional useful information about the request.\n Of most use are the items in the C{kwargs['request'].META} dict. These\n include 'REMOTE_USER' which is the username of the user connecting or\n if using x509 certs then the domain name. Additionally, kwargs has the\n user using the 'user' key.\n \n @return: switches and links that have caused errors\n @rtype: dict\n '''\n slice_id = slice_id.replace(\":\",\"_\")\n slice_id = slice_id.replace(\"name_\",\"nam__\")\n slice_name = slice_name.replace(\":\",\"_\") \n \n# self._actionLog.info(\"Legacy Expedient API: create_slice got the following:\")\n# self._actionLog.info(\" slice_id: %s\" % slice_id)\n# self._actionLog.info(\" project_name: %s\" % project_name)\n# self._actionLog.info(\" project_desc: %s\" % project_description)\n# self._actionLog.info(\" slice_name: %s\" % slice_name)\n# self._actionLog.info(\" slice_desc: %s\" % slice_description)\n# self._actionLog.info(\" controller: %s\" % controller_url)\n# self._actionLog.info(\" owner_email: %s\" % owner_email)\n# self._actionLog.info(\" owner_pass: %s\" % owner_password)\n #self._actionLog.info(\" switch_slivers\"\n #pprint(switch_slivers, indent=8)\n \n #legacy experiment creation (old database access)\n ''' \n e = Experiment.objects.filter(slice_id=slice_id)\n if (e.count()>0):\n old_e = e[0]\n old_fv_name = old_e.get_fv_slice_name()\n update_exp = True\n old_exp_fs = ExperimentFLowSpace.objects.filtswier(exp=old_e)\n else:\n update_exp = False \n ''' \n \n# e = Experiment()\n# e.slice_id = slice_id\n# e.project_name = project_name\n# e.project_desc = project_description\n# e.slice_name = slice_name\n# e.slice_desc = slice_description\n# e.controller_url = controller_url\n# e.owner_email = owner_email\n# e.owner_password = owner_password\n# e.save()\n #update dict info\n purged_switch_slivers = self.purge_switch_slivers_from_null_fs(switch_slivers)\n self.slice_info_dict[slice_id] = {}\n self.slice_info_dict[slice_id]['project_name'] = project_name\n self.slice_info_dict[slice_id]['project_desc'] = project_description\n self.slice_info_dict[slice_id]['slice_name'] = slice_name\n self.slice_info_dict[slice_id]['slice_desc'] = slice_description\n self.slice_info_dict[slice_id]['controller_url'] = controller_url\n self.slice_info_dict[slice_id]['owner_email'] = owner_email\n self.slice_info_dict[slice_id]['owner_password'] = owner_password\n self.slice_info_dict[slice_id]['switch_slivers'] = purged_switch_slivers\n \n all_efs = self.create_slice_fs(purged_switch_slivers)\n \n #set the necessary parameters so that we can use FOAM internal functions for sliver creation\n #Vasileios: now that the requested flowspaces are identified, create the rspec (to be used in FOAM)\n slice_of_rspec = create_ofv3_rspec(slice_id, project_name, project_description, \\\n slice_name, slice_description, controller_url, \\\n owner_email, owner_password, \\\n purged_switch_slivers, all_efs)\n self._log.info(slice_of_rspec) #print the rspec in the log for debugging\n\n #form the slice URN according to http://groups.geni.net/geni/wiki/GeniApiIdentifiers\n slice_urn = \"urn:publicid:IDN+openflow:foam:\"+ str(THIS_SITE_TAG) +\"+slice+\" + \"id_\" + str(slice_id) + \"name_\" + str(slice_name) \n creds = [] #creds are not needed at least for now: to be fixed\n user_info = {}\n user_info[\"urn\"] = \"urn:publicid:IDN+openflow:foam\"+ str(THIS_SITE_TAG) +\"+ch+\" + \"user+\" + str(owner_email) #temp hack\n user_info[\"email\"] = str(owner_email)\n \n #now we have: slice_urn, creds, rspec and user_info : great!\n update_exp = True \n #if GeniDB.getSliverURN(slice_urn) is None:\n if not GeniDB.sliceExists(slice_urn):\n update_exp = False \n\n #moving on (now use gapi2 calls)\n if (update_exp):\n try:\n #old_exp_fs.delete()\n #old_e.delete()\n old_exp_shutdown_success = self.priv_DeleteSliver(slice_urn, creds, [])\n except Exception, e:\n import traceback\n traceback.print_exc()\n raise Exception(\"Exception while trying to shutdown old slice!\")\n if old_exp_shutdown_success == False:\n raise Exception(\"Old slice could not be shutdown\")\n \n #create new slice\n creation_result = self.priv_CreateSliver(slice_urn, creds, slice_of_rspec, user_info)\n \n #legacy save flowspace\n #for fs in all_efs:\n # fs.save() \n #self._log.info(\"Created slice with %s %s %s %s\" % (\n # e.get_fv_slice_name(), owner_password, controller_url, owner_email))\n #transaction.commit()\n \n #store updated dict as a json file in foam db folder\n filedir = './opt/ofelia/ofam/local/db'\n filename = os.path.join(filedir, 'expedient_slices_info.json')\n tempfilename = os.path.join(filedir, 'expedient_slices_info.json.temp.' + str(time.time()) + str(random.randint(1,10000)))\n f = open(tempfilename, 'w')\n json.dump(self.slice_info_dict, f)\n f.close()\n os.rename(tempfilename, filename)\n \n return {\n 'error_msg': \"\",\n 'switches': [],\n } ", "metadata": "root.AMLegExpAPI.pub_create_slice", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 395 }, { "content": " def pub_delete_slice(self, slice_id, **kwargs):\n '''\n Delete the slice with id slice_id.\n \n @param slice_id: an int that uniquely identifies the slice at the \n Clearinghouseclearinghouse.\n @type sliceid: int\n @param kwargs: will contain additional useful information about the request.\n Of most use are the items in the C{kwargs['request'].META} dict. These\n include 'REMOTE_USER' which is the username of the user connecting or\n if using x509 certs then the domain name.\n @return error message if there are any errors or \"\" otherwise.\n '''\n slice_id = slice_id.replace(\":\",\"_\")\n slice_id = slice_id.replace(\"name_\",\"nam__\")\n #legacy deletion (just for compatibility)\n ''' \n try:\n single_exp = Experiment.objects.get(slice_id = sliceid)\n except Experiment.DoesNotExist:\n return \"Experiment Doesnot Exist\"\n ofs = OptsFlowSpace.objects.filter(opt__experiment = single_exp)\n for fs in ofs:\n MatchStruct.objects.filter(optfs = fs).delete()\n # delete all flowspaces opted into this exp : not sure if this is still needed\n ofs.delete()\n UserOpts.objects.filter(experiment = single_exp).delete()\n ExperimentFLowSpace.objects.filter(exp = single_exp).delete()\n single_exp.delete()\n '''\n \n #FOAM deletion\n slice_urn = \"urn:publicid:IDN+openflow:foam:\"+ str(THIS_SITE_TAG) +\"+slice+\" + \"id_\" + str(slice_id) + \"name_\" + str(self.slice_info_dict[slice_id]['slice_name'])\n creds = []\n deleted_slice_info = self.priv_DeleteSliver(slice_urn, creds, [])\n del self.slice_info_dict[slice_id]\n\n #store updated dict as a json file in foam db folder\n filedir = './opt/ofelia/ofam/local/db'\n filename = os.path.join(filedir, 'expedient_slices_info.json')\n tempfilename = os.path.join(filedir, 'expedient_slices_info.json.temp.' + str(time.time()) + str(random.randint(1,10000)))\n f = open(tempfilename, 'w')\n json.dump(self.slice_info_dict, f)\n f.close()\n os.rename(tempfilename, filename)\n \n return \"\"", "metadata": "root.AMLegExpAPI.pub_delete_slice", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 595 }, { "content": " def pub_change_slice_controller(self, slice_id, controller_url, **kwargs):\n slice_id = slice_id.replace(\":\",\"_\")\n slice_id = slice_id.replace(\"name_\",\"nam__\")\n '''\n Changes the slice controller url.\n '''\n if slice_id not in self.slice_info_dict:\n self._log.info(\"Slice is probably not started yet, doing nothing...\")\n return \"\"\n #raise Exception(\"Something went wrong with the fs recovery\")\n #retrieve updated dict as a json file from foam db folder\n filedir = './opt/ofelia/ofam/local/db'\n filename = os.path.join(filedir, 'expedient_slices_info.json')\n if os.path.isfile(filename):\n f = open(filename, 'r')\n self.slice_info_dict = json.load(f)\n f.close()\n else:\n self._log.info(\"Slice is probably not started yet, doing nothing...\")\n return \"\"\n slice_of_rspec = create_ofv3_rspec(slice_id, self.slice_info_dict[slice_id]['project_name'], \n self.slice_info_dict[slice_id]['project_desc'],\n self.slice_info_dict[slice_id]['slice_name'],\n self.slice_info_dict[slice_id]['slice_desc'], controller_url,\n self.slice_info_dict[slice_id]['owner_email'],\n self.slice_info_dict[slice_id]['owner_password'],\n self.slice_info_dict[slice_id]['switch_slivers'],\n self.create_slice_fs(self.slice_info_dict[slice_id]['switch_slivers']))\n self.slice_info_dict[slice_id]['controller_url'] = controller_url\n slice_urn = \"urn:publicid:IDN+openflow:foam:\"+ str(THIS_SITE_TAG) +\"+slice+\" + \"id_\" + str(slice_id) + \"name_\" + str(self.slice_info_dict[slice_id]['slice_name'])\n creds = [] #creds are not needed at least for now: to be fixed\n user_info = {}\n user_info[\"urn\"] = \"urn:publicid:IDN+openflow:foam\"+ str(THIS_SITE_TAG) +\"+ch+\" + \"user+\" + str(self.slice_info_dict[slice_id]['owner_email']) #temp hack\n user_info[\"email\"] = str(self.slice_info_dict[slice_id]['owner_email'])\n if GeniDB.sliceExists(slice_urn):\n sliv_urn = GeniDB.getSliverURN(slice_urn)\n else:\n raise Exception(\"Something went wrong with the fs recovery, slice does not exist!\")\n sliver = GeniDB.getSliverObj(sliv_urn) \n is_allocated_by_FV = GeniDB.getEnabled(sliv_urn)\n was_allocated_by_FV = is_allocated_by_FV\n try:\n #old_exp_shutdown_success = legexpgapi2_apih.pub_Shutdown(slice_urn, creds, [])\n old_exp_shutdown_success = self.priv_DeleteSliver(slice_urn, creds, [])\n except Exception, e:\n import traceback\n traceback.print_exc()\n raise Exception(\"Exception while trying to shutdown old slice!\")\n if old_exp_shutdown_success == False:\n raise Exception(\"Old slice could not be shutdown\")\n if was_allocated_by_FV == True:\n #create new slice and automatically approve since already approved (only controller changes)\n creation_result = self.priv_CreateSliver(slice_urn, creds, slice_of_rspec, user_info, True, None)\n else:\n creation_result = self.priv_CreateSliver(slice_urn, creds, slice_of_rspec, user_info, False, None)\n\n #store updated dict as a json file in foam db folder\n filedir = './opt/ofelia/ofam/local/db'\n filename = os.path.join(filedir, 'expedient_slices_info.json')\n tempfilename = os.path.join(filedir, 'expedient_slices_info.json.temp.' + str(time.time()) + str(random.randint(1,10000)))\n f = open(tempfilename, 'w')\n json.dump(self.slice_info_dict, f)\n f.close()\n os.rename(tempfilename, filename)\n \n return \"\"", "metadata": "root.AMLegExpAPI.pub_change_slice_controller", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 645 }, { "content": " def pub_get_granted_flowspace(self, slice_id, **kwargs):\n '''\n Return FlowVisor Rules for the slice.\n '''\n slice_id = slice_id.replace(\":\",\"_\")\n slice_id = slice_id.replace(\"name_\",\"nam__\")\n def parse_granted_flowspaces(gfs):\n gfs_list=[] \n for fs in gfs:\n fs_dict = dict(\n flowspace=dict(),\n openflow=dict()\n )\n fs_dict['openflow']=[]\n fs_dict['flowspace']=dict(\n mac_src_s=int_to_mac(fs.mac_src_s),\n mac_src_e=int_to_mac(fs.mac_src_e),\n mac_dst_s=int_to_mac(fs.mac_dst_s),\n mac_dst_e=int_to_mac(fs.mac_dst_e),\n eth_type_s=fs.eth_type_s,\n eth_type_e=fs.eth_type_e,\n vlan_id_s=fs.vlan_id_s,\n vlan_id_e=fs.vlan_id_e,\n ip_src_s=int_to_dotted_ip(fs.ip_src_s),\n ip_dst_s=int_to_dotted_ip(fs.ip_dst_s),\n ip_src_e=int_to_dotted_ip(fs.ip_src_e),\n ip_dst_e=int_to_dotted_ip(fs.ip_dst_e),\n ip_proto_s=fs.ip_proto_s,\n ip_proto_e=fs.ip_proto_e,\n tp_src_s=fs.tp_src_s,\n tp_dst_s=fs.tp_dst_s,\n tp_src_e=fs.tp_src_e,\n tp_dst_e=fs.tp_dst_e,\n )\n openflow_dict=dict(\n dpid=fs.dpid, \n direction=fs.direction, \n port_number_s=fs.port_number_s, \n port_number_e=fs.port_number_e, \n )\n existing_fs = False\n for prev_dict_list in gfs_list:\n prev_dict = prev_dict_list[0]\n if fs_dict['flowspace'] == prev_dict['flowspace']:\n if openflow_dict not in prev_dict['openflow']:\n prev_dict['openflow'].append(openflow_dict)\n existing_fs = True\n break\n if not existing_fs:\n fs_dict['openflow'].append(openflow_dict) \n fs_list = [fs_dict]\n gfs_list.append(fs_list)\n \n return gfs_list\n\n if slice_id in self.slice_info_dict:\n slice_urn = \"urn:publicid:IDN+openflow:foam:\"+ str(THIS_SITE_TAG) +\"+slice+\" + \"id_\" + str(slice_id) + \"name_\" + str(self.slice_info_dict[slice_id]['slice_name'])\n else:\n return [] \n if GeniDB.sliceExists(slice_urn):\n sliv_urn = GeniDB.getSliverURN(slice_urn)\n else:\n return []\n #raise Exception(parseFVexception(e))\n sliver = GeniDB.getSliverObj(sliv_urn) \n is_allocated_by_FV = GeniDB.getEnabled(sliv_urn)\n if is_allocated_by_FV == True:\n #that means that the flow space as requested was allocated\n #so retrieve the fs in the form Expedient understands\n #TODO: check that ecery time this corresponds to the actual flowspec that FOAM has\n #retrieve updated dict as a json file from foam db folder\n filedir = './opt/ofelia/ofam/local/db'\n filename = os.path.join(filedir, 'expedient_slices_info.json')\n if os.path.isfile(filename):\n f = open(filename, 'r')\n self.slice_info_dict = json.load(f)\n f.close()\n else:\n self._log.info(\"Slice is probably not started yet, doing nothing...\")\n return []\n if slice_id not in self.slice_info_dict:\n raise Exception(\"Something went wrong with the fs recovery\")\n all_efs = self.create_slice_fs(self.slice_info_dict[slice_id]['switch_slivers']) \n gfs = [] \n try: \n gfs = parse_granted_flowspaces(all_efs)\n except Exception,e:\n import traceback\n traceback.print_exc()\n self._log.exception(\"FlowSpace for the allocated slice is not returned\")\n raise Exception(parseFVexception(e))\n #self._log.info(\"FlowSpace for the allocated slice is returned\")\n #for fs_list in gfs:\n # fs = fs_list[0]\n # self._log.info(fs['flowspace'])\n # self._log.info(fs['openflow'])\n if gfs == []:\n self._log.info(\"Empty FlowSpace for the allocated slice returned! Need to debug...\")\n return gfs\n else:\n return [] ", "metadata": "root.AMLegExpAPI.pub_get_granted_flowspace", "header": "['class', 'AMLegExpAPI', '(', 'foam', '.', 'api', '.', 'xmlrpc', '.', 'Dispatcher', ')', ':', '___EOS___']", "index": 874 } ]

[ { "span": "cred_ids ", "start_line": 130, "start_column": 4, "end_line": 130, "end_column": 12 }, { "span": "creation_result ", "start_line": 568, "start_column": 4, "end_line": 568, "end_column": 19 }, { "span": "deleted_slice_info ", "start_line": 629, "start_column": 4, "end_line": 629, "end_column": 22 }, { "span": "sliver ", "start_line": 683, "start_column": 4, "end_line": 683, "end_column": 10 }, { "span": "creation_result ", "start_line": 697, "start_column": 6, "end_line": 697, "end_column": 21 }, { "span": "creation_result ", "start_line": 699, "start_column": 6, "end_line": 699, "end_column": 21 }, { "span": "sliver ", "start_line": 938, "start_column": 4, "end_line": 938, "end_column": 10 } ]

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[ { "content": " def _pull(self):\n \"\"\"\n A generator that calls C{resumeProducing} on the underlying producer\n forever.\n\n If C{resumeProducing} throws an exception, the producer is\n unregistered, which should result in streaming stopping.\n \"\"\"\n while True:\n try:\n self._producer.resumeProducing()\n except:\n log.err(None, \"%s failed, producing will be stopped:\" %\n (safe_str(self._producer),))\n try:\n self._consumer.unregisterProducer()\n # The consumer should now call stopStreaming() on us,\n # thus stopping the streaming.\n except:\n # Since the consumer blew up, we may not have had\n # stopStreaming() called, so we just stop on our own:\n log.err(None, \"%s failed to unregister producer:\" %\n (safe_str(self._consumer),))\n self._finished = True\n return\n yield None", "metadata": "root._PullToPush._pull", "header": "['class', '_PullToPush', '(', 'object', ')', ':', '___EOS___']", "index": 95 } ]

[ { "span": "except:", "start_line": 106, "start_column": 12, "end_line": 106, "end_column": 19 }, { "span": "except:", "start_line": 113, "start_column": 16, "end_line": 113, "end_column": 23 } ]

[]

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[ { "content": "def alias(f):\n setattr(Assembler, f.__name__, f)", "metadata": "root.alias", "header": "['module', '___EOS___']", "index": 901 }, { "content": "@alias\ndef rotate(asm, dst, src, shift, **kwargs):\n return asm.v8min(dst, src, src, rotate=shift, **kwargs)", "metadata": "root.rotate", "header": "['module', '___EOS___']", "index": 917 }, { "content": "@alias\ndef mov(asm, dst, src, **kwargs):\n set_flags = kwargs.pop('set_flags', False)\n return asm.bor(dst, src, src, set_flags=set_flags, **kwargs)", "metadata": "root.mov", "header": "['module', '___EOS___']", "index": 926 }, { "content": "@alias\ndef mutex_acquire(asm):\n return asm.mov(REGISTERS['null'], REGISTERS['mutex'])", "metadata": "root.mutex_acquire", "header": "['module', '___EOS___']", "index": 936 }, { "content": "@alias\ndef mutex_release(asm):\n return asm.mov(REGISTERS['mutex'], REGISTERS['null'])", "metadata": "root.mutex_release", "header": "['module', '___EOS___']", "index": 940 }, { "content": "@alias\ndef setup_vpm_read(asm, nrows, mode='32bit horizontal', Y=0, stride=1,\n **kwargs):\n modes = mode.split()\n size = {'8bit': 0, '16bit': 1, '32bit': 2}[modes.pop(0)]\n laned = {'packed': 0, 'laned': 1}[modes.pop(0)] if size != 2 else 0\n horizontal = {'vertical': 0, 'horizontal': 1}[modes.pop(0)]\n if horizontal:\n addr = (\n Y << 2 | kwargs.get('B', 0) if size == 0 else\n Y << 1 | kwargs.get('H', 0) if size == 1 else\n Y\n )\n else:\n X = kwargs['X']\n addr = (\n (Y & 0x30) << 2 | X << 2 | kwargs.get('B', 0) if size == 0 else\n (Y & 0x30) << 1 | X << 1 | kwargs.get('H', 0) if size == 1 else\n (Y & 0x30) | X\n )\n\n asm.ldi(REGISTERS['vpmvcd_rd_setup'],\n (nrows&0xf)<<20|stride<<12|horizontal<<11|laned<<10|size<<8|addr)", "metadata": "root.setup_vpm_read", "header": "['module', '___EOS___']", "index": 944 }, { "content": "@alias\ndef setup_vpm_write(asm, mode='32bit horizontal', stride=1, Y=0, **kwargs):\n modes = mode.split()\n size = {'8bit': 0, '16bit': 1, '32bit': 2}[modes.pop(0)]\n laned = {'packed': 0, 'laned': 1}[modes.pop(0)] if size != 2 else 0\n horizontal = {'vertical': 0, 'horizontal': 1}[modes.pop(0)]\n if horizontal:\n addr = (\n Y << 2 | kwargs.get('B', 0) if size == 0 else\n Y << 1 | kwargs.get('H', 0) if size == 1 else\n Y\n )\n else:\n X = kwargs.get('X', 0)\n addr = (\n (Y & 0x30) << 2 | X << 2 | kwargs.get('B', 0) if size == 0 else\n (Y & 0x30) << 1 | X << 1 | kwargs.get('H', 0) if size == 1 else\n (Y & 0x30) | X\n )\n\n asm.ldi(REGISTERS['vpmvcd_wr_setup'],\n stride<<12|horizontal<<11|laned<<10|size<<8|addr)", "metadata": "root.setup_vpm_write", "header": "['module', '___EOS___']", "index": 968 }, { "content": "@alias\ndef setup_dma_load_stride(asm, val, tmp_reg=REGISTERS['r0']):\n if not isinstance(val, int) and val.name == tmp_reg.name:\n raise AssembleError('setup_dma_store_stride uses \\'{}\\' internally'\n .format(tmp_reg.name))\n if isinstance(val, int):\n return asm.ldi(REGISTERS['vpmvcd_rd_setup'], (9<<28)|val)\n else:\n asm.ldi(tmp_reg, 9<<28)\n return asm.bor(REGISTERS['vpmvcd_rd_setup'], tmp_reg, val)", "metadata": "root.setup_dma_load_stride", "header": "['module', '___EOS___']", "index": 991 }, { "content": "@alias\ndef setup_dma_load(asm, nrows=1, ncols=16, mode='32bit horizontal', Y=0, X=0,\n offset=0, vpitch=1, mpitch=3):\n modes = mode.split()\n modew = (\n 0x4 | offset if modes[0] == '8bit' else\n 0x2 | offset if modes[0] == '16bit' else\n 0\n )\n vertical = { 'horizontal': 0, 'vertical': 1 }[modes[1]]\n asm.ldi(REGISTERS['vpmvcd_rd_setup'],\n 0x80000000|modew<<28|mpitch<<24|(ncols&0xf)<<20|(nrows&0xf)<<16|\n vpitch<<12|vertical<<11|Y<<4|X)", "metadata": "root.setup_dma_load", "header": "['module', '___EOS___']", "index": 1002 }, { "content": "@alias\ndef start_dma_load(asm, reg, rot=0):\n if rot == 0:\n return asm.mov(REGISTERS['vpm_ld_addr'], reg)\n else:\n return asm.rotate(REGISTERS['vpm_ld_addr'], reg, rot)", "metadata": "root.start_dma_load", "header": "['module', '___EOS___']", "index": 1016 }, { "content": "@alias\ndef wait_dma_load(asm):\n return asm.mov(REGISTERS['null'], REGISTERS['vpm_ld_wait'])", "metadata": "root.wait_dma_load", "header": "['module', '___EOS___']", "index": 1023 }, { "content": "@alias\ndef setup_dma_store(asm, nrows=1, ncols=16, mode='32bit horizontal', Y=0, X=0,\n offset=0):\n modes = mode.split()\n modew = (\n 0x4 | offset if modes[0] == '8bit' else\n 0x2 | offset if modes[0] == '16bit' else\n 0\n )\n horizontal = { 'horizontal': 1, 'vertical': 0 }[modes[1]]\n asm.ldi(REGISTERS['vpmvcd_wr_setup'],\n 0x80000000|(nrows&0x7f)<<23|(ncols&0x7f)<<16|horizontal<<14|Y<<7|\n X<<3|modew)", "metadata": "root.setup_dma_store", "header": "['module', '___EOS___']", "index": 1027 }, { "content": "@alias\ndef setup_dma_store_stride(asm, val, blockmode=False, tmp_reg=REGISTERS['r0']):\n if not isinstance(val, int) and val.name == tmp_reg.name:\n raise AssembleError('setup_dma_store_stride uses \\'{}\\' internally'\n .format(tmp_reg.name))\n if isinstance(val, int):\n asm.ldi(REGISTERS['vpmvcd_wr_setup'], (3<<30)|(blockmode<<16)|val)\n else:\n asm.ldi(tmp_reg, (3<<30)|(blockmode<<16))\n asm.bor(REGISTERS['vpmvcd_wr_setup'], tmp_reg, val)", "metadata": "root.setup_dma_store_stride", "header": "['module', '___EOS___']", "index": 1041 }, { "content": "@alias\ndef start_dma_store(asm, reg, rot=0):\n if rot == 0:\n return asm.mov(REGISTERS['vpm_st_addr'], reg)\n else:\n return asm.rotate(REGISTERS['vpm_st_addr'], reg, rot)", "metadata": "root.start_dma_store", "header": "['module', '___EOS___']", "index": 1052 }, { "content": "@alias\ndef wait_dma_store(asm):\n return asm.mov(REGISTERS['null'], REGISTERS['vpm_st_wait'])", "metadata": "root.wait_dma_store", "header": "['module', '___EOS___']", "index": 1059 }, { "content": "@alias\ndef interrupt(asm):\n return asm.mov(REGISTERS['host_interrupt'], 1)", "metadata": "root.interrupt", "header": "['module', '___EOS___']", "index": 1063 }, { "content": "@alias\ndef exit(asm, interrupt=True):\n if interrupt:\n asm.interrupt()\n\n # The instruction signaling program end must not attempt to write to either\n # of the physical A or B register files. (Reference guide Page 22)\n asm.mov(\n REGISTERS['r0'], REGISTERS['r0'], sig='thread end'\n ).mov(\n REGISTERS['r0'], REGISTERS['r0']\n )\n\n asm.nop()\n asm.nop()", "metadata": "root.exit", "header": "['module', '___EOS___']", "index": 1067 }, { "content": "@alias\ndef sema_up(asm, sema_id):\n asm._emit_sema(0, sema_id)", "metadata": "root.sema_up", "header": "['module', '___EOS___']", "index": 1083 }, { "content": "@alias\ndef sema_down(asm, sema_id):\n asm._emit_sema(1, sema_id)", "metadata": "root.sema_down", "header": "['module', '___EOS___']", "index": 1087 } ]

[ { "span": "alias", "start_line": 917, "start_column": 1, "end_line": 917, "end_column": 6 }, { "span": "alias", "start_line": 926, "start_column": 1, "end_line": 926, "end_column": 6 }, { "span": "alias", "start_line": 936, "start_column": 1, "end_line": 936, "end_column": 6 }, { "span": "alias", "start_line": 940, "start_column": 1, "end_line": 940, "end_column": 6 }, { "span": "alias", "start_line": 944, "start_column": 1, "end_line": 944, "end_column": 6 }, { "span": "alias", "start_line": 968, "start_column": 1, "end_line": 968, "end_column": 6 }, { "span": "alias", "start_line": 991, "start_column": 1, "end_line": 991, "end_column": 6 }, { "span": "alias", "start_line": 1002, "start_column": 1, "end_line": 1002, "end_column": 6 }, { "span": "alias", "start_line": 1016, "start_column": 1, "end_line": 1016, "end_column": 6 }, { "span": "alias", "start_line": 1023, "start_column": 1, "end_line": 1023, "end_column": 6 }, { "span": "alias", "start_line": 1027, "start_column": 1, "end_line": 1027, "end_column": 6 }, { "span": "alias", "start_line": 1041, "start_column": 1, "end_line": 1041, "end_column": 6 }, { "span": "alias", "start_line": 1052, "start_column": 1, "end_line": 1052, "end_column": 6 }, { "span": "alias", "start_line": 1059, "start_column": 1, "end_line": 1059, "end_column": 6 }, { "span": "alias", "start_line": 1063, "start_column": 1, "end_line": 1063, "end_column": 6 }, { "span": "alias", "start_line": 1067, "start_column": 1, "end_line": 1067, "end_column": 6 }, { "span": "alias", "start_line": 1083, "start_column": 1, "end_line": 1083, "end_column": 6 }, { "span": "alias", "start_line": 1087, "start_column": 1, "end_line": 1087, "end_column": 6 } ]

[ { "span": "def alias(f):", "start_line": 901, "start_column": 0, "end_line": 901, "end_column": 13 } ]

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[ { "content": "def normal_cdf_inv(p, mu = None, sigma2 = None, lower=True):\n\n upper = not lower\n if p < 0 or p > 1:\n raise Exception(\"Illegal argument %f for qnorm(p).\" % p)\n \n split = 0.42\n a0 = 2.50662823884\n a1 = -18.61500062529\n a2 = 41.39119773534\n a3 = -25.44106049637\n b1 = -8.47351093090\n b2 = 23.08336743743\n b3 = -21.06224101826\n b4 = 3.13082909833\n c0 = -2.78718931138\n c1 = -2.29796479134\n c2 = 4.85014127135\n c3 = 2.32121276858\n d1 = 3.54388924762\n d2 = 1.63706781897\n q = p - 0.5\n \n r = 0.0\n ppnd = 0.0\n \n if abs(q) <= split:\n r = q * q\n ppnd = q * (((a3 * r + a2) * r + a1) * r + a0) / ((((b4 * r + b3) * r + b2) * r + b1) * r + 1)\n else:\n r = p\n if q > 0:\n r = 1 - p\n \n if r > 0:\n r = sqrt(- log(r))\n ppnd = (((c3 * r + c2) * r + c1) * r + c0) / ((d2 * r + d1) * r + 1)\n \n if q < 0:\n ppnd = - ppnd\n else:\n ppnd = 0\n \n if upper:\n ppnd = - ppnd\n \n if mu != None and sigma2 != None:\n return ppnd * sqrt(sigma2) + mu\n else:\n return ppnd", "metadata": "root.normal_cdf_inv", "header": "['module', '___EOS___']", "index": 78 }, { "content": "def normal_cdf (z, mu = 0.0, sigma2 = 1.0, lower=True):\n \n upper = not lower\n\n z = (z - mu) / sqrt(sigma2)\n \n ltone = 7.0\n utzero = 18.66\n con = 1.28\n a1 = 0.398942280444\n a2 = 0.399903438504\n a3 = 5.75885480458\n a4 = 29.8213557808\n a5 = 2.62433121679\n a6 = 48.6959930692\n a7 = 5.92885724438\n b1 = 0.398942280385\n b2 = 3.8052e-8\n b3 = 1.00000615302\n b4 = 3.98064794e-4\n b5 = 1.986153813664\n b6 = 0.151679116635\n b7 = 5.29330324926\n b8 = 4.8385912808\n b9 = 15.1508972451\n b10 = 0.742380924027\n b11 = 30.789933034\n b12 = 3.99019417011\n\n y = 0.0\n alnorm = 0.0\n \n if z < 0:\n upper = not upper\n z = - z\n \n if z <= ltone or upper and z <= utzero:\n y = 0.5 * z * z\n if z > con:\n alnorm = b1 * exp(- y) / (z - b2 + b3 / (z + b4 + b5 / (z - b6 + b7 / (z + b8 - b9 / (z + b10 + b11 / (z + b12))))))\n else:\n alnorm = 0.5 - z * (a1 - a2 * y / (y + a3 - a4 / (y + a5 + a6 / (y + a7))))\n else:\n alnorm = 0.0\n if not upper:\n alnorm = 1.0 - alnorm\n return alnorm", "metadata": "root.normal_cdf", "header": "['module', '___EOS___']", "index": 129 } ]

[ { "span": "r ", "start_line": 101, "start_column": 4, "end_line": 101, "end_column": 5 }, { "span": "ppnd ", "start_line": 102, "start_column": 4, "end_line": 102, "end_column": 8 }, { "span": "y ", "start_line": 158, "start_column": 4, "end_line": 158, "end_column": 5 }, { "span": "alnorm ", "start_line": 159, "start_column": 4, "end_line": 159, "end_column": 10 } ]

[ { "span": "ppnd ", "start_line": 106, "start_column": 8, "end_line": 106, "end_column": 12 }, { "span": "ppnd ", "start_line": 114, "start_column": 12, "end_line": 114, "end_column": 16 }, { "span": "ppnd ", "start_line": 119, "start_column": 12, "end_line": 119, "end_column": 16 }, { "span": "alnorm ", "start_line": 168, "start_column": 12, "end_line": 168, "end_column": 18 }, { "span": "alnorm ", "start_line": 170, "start_column": 12, "end_line": 170, "end_column": 18 }, { "span": "alnorm ", "start_line": 172, "start_column": 8, "end_line": 172, "end_column": 14 } ]

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[ { "content": "from django.db.models.signals import post_save\nfrom django.dispatch import receiver\nimport pdb\nfrom generate.dependency_walker import *\nfrom synchronizers.openstack import model_policies\nfrom xos.logger import logger\nfrom datetime import datetime\nimport time\nfrom core.models import *\nfrom django.db import reset_queries\nfrom django.db.transaction import atomic\nfrom django.db.models import F, Q\n\nmodelPolicyEnabled = True\nbad_instances=[]\n\n\n\n\n\n\n#@atomic\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def EnableModelPolicy(x):\n global modelPolicyEnabled\n modelPolicyEnabled = x", "metadata": "root.EnableModelPolicy", "header": "['module', '___EOS___']", "index": 16 }, { "content": "def update_wp(d, o):\n try:\n save_fields = []\n if (d.write_protect != o.write_protect):\n d.write_protect = o.write_protect\n save_fields.append('write_protect')\n if (save_fields):\n d.save(update_fields=save_fields)\n except AttributeError,e:\n raise e", "metadata": "root.update_wp", "header": "['module', '___EOS___']", "index": 20 }, { "content": "def update_dep(d, o):\n try:\n print 'Trying to update %s'%d\n save_fields = []\n if (d.updated < o.updated):\n save_fields = ['updated']\n\n if (save_fields):\n d.save(update_fields=save_fields)\n except AttributeError,e:\n raise e\n except Exception,e:\n logger.info('Could not save %r. Exception: %r'%(d,e), extra=d.tologdict())", "metadata": "root.update_dep", "header": "['module', '___EOS___']", "index": 31 }, { "content": "def delete_if_inactive(d, o):\n try:\n d.delete()\n print \"Deleted %s (%s)\"%(d,d.__class__.__name__)\n except:\n pass\n return", "metadata": "root.delete_if_inactive", "header": "['module', '___EOS___']", "index": 45 }, { "content": "def execute_model_policy(instance, deleted):\n # Automatic dirtying\n if (instance in bad_instances):\n return\n\n # These are the models whose children get deleted when they are\n delete_policy_models = ['Slice','Instance','Network']\n sender_name = instance.__class__.__name__\n policy_name = 'model_policy_%s'%sender_name\n noargs = False\n\n if (not deleted):\n walk_inv_deps(update_dep, instance)\n walk_deps(update_wp, instance)\n elif (sender_name in delete_policy_models):\n walk_inv_deps(delete_if_inactive, instance)\n\n\n\n try:\n policy_handler = getattr(model_policies, policy_name, None)\n logger.error(\"POLICY HANDLER: %s %s\" % (policy_name, policy_handler))\n if policy_handler is not None:\n if (deleted):\n try:\n policy_handler.handle_delete(instance)\n except AttributeError:\n pass\n else:\n policy_handler.handle(instance)\n except:\n logger.log_exc(\"Model Policy Error:\")\n\n try:\n instance.policed=datetime.now()\n instance.save(update_fields=['policed'])\n except:\n logging.error('Object %r is defective'%instance)\n bad_instances.append(instance)", "metadata": "root.execute_model_policy", "header": "['module', '___EOS___']", "index": 55 }, { "content": "def noop(o,p):\n pass", "metadata": "root.noop", "header": "['module', '___EOS___']", "index": 95 }, { "content": "def run_policy():\n while (True):\n start = time.time()\n run_policy_once()\n if (time.time()-start<1):\n time.sleep(1)", "metadata": "root.run_policy", "header": "['module', '___EOS___']", "index": 98 }, { "content": "def run_policy_once():\n from core.models import Instance,Slice,Controller,Network,User,SlicePrivilege,Site,SitePrivilege,Image,ControllerSlice,ControllerUser,ControllerSite\n models = [Controller, Site, SitePrivilege, Image, ControllerSlice, ControllerSite, ControllerUser, User, Slice, Network, Instance, SlicePrivilege]\n objects = []\n deleted_objects = []\n\n for m in models:\n res = m.objects.filter((Q(policed__lt=F('updated')) | Q(policed=None)) & Q(no_policy=False))\n objects.extend(res)\n res = m.deleted_objects.filter(Q(policed__lt=F('updated')) | Q(policed=None))\n deleted_objects.extend(res)\n\n for o in objects:\n execute_model_policy(o, o.deleted)\n\n for o in deleted_objects:\n execute_model_policy(o, True)\n\n # Reap non-sync'd models here\n reaped = [Slice]\n\n for m in reaped:\n dobjs = m.deleted_objects.all()\n for d in dobjs:\n deps = walk_inv_deps(noop, d)\n if (not deps):\n print 'Purging object %r'%d\n d.delete(purge=True)\n\n try:\n reset_queries()\n except:\n # this shouldn't happen, but in case it does, catch it...\n logger.log_exc(\"exception in reset_queries\")", "metadata": "root.run_policy_once", "header": "['module', '___EOS___']", "index": 105 } ]

[ { "span": "from django.db.models.signals import post_save", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 46 }, { "span": "from django.dispatch import receiver", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 36 }, { "span": "import pdb", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 10 }, { "span": "from django.db.transaction import atomic", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 40 } ]

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[ { "content": " def test_equal_operator(self):\n cond1 = Equals(self.value, self.value2)\n cond2 = Equals(self.value, self.value2)\n self.assertTrue(cond1 == cond2)", "metadata": "root.TestConditions.test_equal_operator", "header": "['class', 'TestConditions', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 122 }, { "content": " def test_equal_operator_type(self):\n cond1 = Equals(self.value, self.value2)\n cond2 = NotEquals(self.value, self.value2)\n self.assertFalse(cond1 == cond2)", "metadata": "root.TestConditions.test_equal_operator_type", "header": "['class', 'TestConditions', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 127 }, { "content": " def test_equal_operator_value(self):\n cond1 = Equals(self.value, self.value2)\n cond2 = Equals(self.value, self.value)\n self.assertFalse(cond1 == cond2)", "metadata": "root.TestConditions.test_equal_operator_value", "header": "['class', 'TestConditions', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 132 }, { "content": " def test_not_equal_operator(self):\n cond1 = Equals(self.value, self.value2)\n cond2 = NotEquals(self.value, self.value)\n self.assertTrue(cond1 != cond2)", "metadata": "root.TestConditions.test_not_equal_operator", "header": "['class', 'TestConditions', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 137 } ]

[ { "span": "self.assertTrue(cond1 == cond2)", "start_line": 125, "start_column": 8, "end_line": 125, "end_column": 39 }, { "span": "self.assertFalse(cond1 == cond2)", "start_line": 130, "start_column": 8, "end_line": 130, "end_column": 40 }, { "span": "self.assertFalse(cond1 == cond2)", "start_line": 135, "start_column": 8, "end_line": 135, "end_column": 40 }, { "span": "self.assertTrue(cond1 != cond2)", "start_line": 140, "start_column": 8, "end_line": 140, "end_column": 39 } ]

[]

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[ { "content": " def isUnique(self, word):\n \"\"\"\n check if a word is unique.\n :type word: str\n :rtype: bool\n \"\"\"\n l = len(word)\n abbr = self.abbreviation(word)\n return self.lookup_[abbr] <= {word}", "metadata": "root.ValidWordAbbr.isUnique", "header": "['class', 'ValidWordAbbr', '(', 'object', ')', ':', '___EOS___']", "index": 16 } ]

[ { "span": "l ", "start_line": 22, "start_column": 8, "end_line": 22, "end_column": 9 } ]

[]

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[ { "content": " def append_data(self, proc, bData, end=False):\n if self.debug:\n print(\"DEBUG: append_data start\")\n data = bData.decode('utf-8')\n if self.debug:\n print(\"DEBUG: data= \"+data)\n self.buffered_data = self.buffered_data + data\n data = self.buffered_data.replace(self.file_path, self.file_name).replace('\\r\\n', '\\n').replace('\\r', '\\n')\n\n if end is False:\n rsep_pos = data.rfind('\\n')\n if rsep_pos == -1:\n # not found full line.\n return\n self.buffered_data = data[rsep_pos+1:]\n data = data[:rsep_pos+1]\n\n # ignore error.\n text = data\n if (len(self.ignore_errors) > 0) and (not self.use_node_jslint):\n text = ''\n for line in data.split('\\n'):\n if len(line) == 0:\n continue\n ignored = False\n for rule in self.ignore_errors:\n if re.search(rule, line):\n ignored = True\n self.ignored_error_count += 1\n if self.debug:\n print(\"text match line \")\n print(\"rule = \" + rule)\n print(\"line = \" + line)\n print(\"---------\")\n break\n if ignored is False:\n text += line + '\\n'\n\n self.show_tests_panel()\n selection_was_at_end = (len(self.output_view.sel()) == 1 and self.output_view.sel()[0] == sublime.Region(self.output_view.size()))\n with Edit(self.output_view, True) as edit:\n edit.insert(self.output_view.size(), text)\n\n if end and not self.use_node_jslint:\n text = '\\njslint: ignored ' + str(self.ignored_error_count) + ' errors.\\n\\n'\n with Edit(self.output_view, True) as edit:\n edit.insert(0, text)", "metadata": "root.JslintCommand.append_data", "header": "['class', 'JslintCommand', '(', 'sublime_plugin', '.', 'WindowCommand', ')', ':', '___EOS___']", "index": 73 }, { "content": " def on_selection_modified(self, view):\n if JsLintEventListener.disabled:\n return\n if view.name() != RESULT_VIEW_NAME:\n return\n region = view.line(view.sel()[0])\n s = sublime.load_settings(SETTINGS_FILE)\n\n # make sure call once.\n if self.previous_resion == region:\n return\n self.previous_resion = region\n\n # extract line from jslint result.\n if (s.get('use_node_jslint', False)):\n pattern_position = \"\\\\/\\\\/ Line (\\d+), Pos (\\d+)$\"\n text = view.substr(region)\n text = re.findall(pattern_position, text)\n if len(text) > 0:\n line = int(text[0][0])\n col = int(text[0][1])\n else:\n text = view.substr(region).split(':')\n if len(text) < 4 or text[0] != 'jslint' or re.match('\\d+', text[2]) is None or re.match('\\d+', text[3]) is None:\n return\n line = int(text[2])\n col = int(text[3])\n\n # hightligh view line.\n view.add_regions(RESULT_VIEW_NAME, [region], \"comment\")\n\n # find the file view.\n file_path = view.settings().get('file_path')\n window = sublime.active_window()\n file_view = None\n for v in window.views():\n if v.file_name() == file_path:\n file_view = v\n break\n if file_view is None:\n return\n\n self.file_view = file_view\n window.focus_view(file_view)\n file_view.run_command(\"goto_line\", {\"line\": line})\n file_region = file_view.line(file_view.sel()[0])\n\n # highlight file_view line\n file_view.add_regions(RESULT_VIEW_NAME, [file_region], \"string\")", "metadata": "root.JsLintEventListener.on_selection_modified", "header": "['class', 'JsLintEventListener', '(', 'sublime_plugin', '.', 'EventListener', ')', ':', '___EOS___']", "index": 161 } ]

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[]

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[ { "content": "from encoders import JSONEncoder, LocalJSONEncoder\nfrom encoders import HexEncoder\nfrom encoders import IdentityEncoder\nfrom protobuf import ProtobufObjectEncoder\nfrom protobuf import RecordEncoder\nfrom protobuf import HexRecordEncoder\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from encoders import JSONEncoder, LocalJSONEncoder", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 50 }, { "span": "from encoders import HexEncoder", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 31 }, { "span": "from encoders import IdentityEncoder", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 36 }, { "span": "from protobuf import ProtobufObjectEncoder", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 42 }, { "span": "from protobuf import RecordEncoder", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 34 }, { "span": "from protobuf import HexRecordEncoder", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 37 } ]

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[ { "content": "##########################################################################\n#\n# Copyright (c) 2014, Esteban Tovagliari. All rights reserved.\n#\n# Redistribution and use in source and binary forms, with or without\n# modification, are permitted provided that the following conditions are\n# met:\n#\n# * Redistributions of source code must retain the above\n# copyright notice, this list of conditions and the following\n# disclaimer.\n#\n# * Redistributions in binary form must reproduce the above\n# copyright notice, this list of conditions and the following\n# disclaimer in the documentation and/or other materials provided with\n# the distribution.\n#\n# * Neither the name of John Haddon nor the names of\n# any other contributors to this software may be used to endorse or\n# promote products derived from this software without specific prior\n# written permission.\n#\n# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS\n# IS\" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,\n# THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR\n# PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR\n# CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,\n# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,\n# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR\n# PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF\n# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING\n# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS\n# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n#\n##########################################################################\n\nfrom AppleseedLightTest import AppleseedLightTest\nfrom AppleseedRenderTest import AppleseedRenderTest\nfrom AppleseedOptionsTest import AppleseedOptionsTest\nfrom AppleseedAttributesTest import AppleseedAttributesTest\n\nif __name__ == \"__main__\":\n\timport unittest\n\tunittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from AppleseedLightTest import AppleseedLightTest", "start_line": 36, "start_column": 0, "end_line": 36, "end_column": 49 }, { "span": "from AppleseedRenderTest import AppleseedRenderTest", "start_line": 37, "start_column": 0, "end_line": 37, "end_column": 51 }, { "span": "from AppleseedOptionsTest import AppleseedOptionsTest", "start_line": 38, "start_column": 0, "end_line": 38, "end_column": 53 }, { "span": "from AppleseedAttributesTest import AppleseedAttributesTest", "start_line": 39, "start_column": 0, "end_line": 39, "end_column": 59 } ]

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[ { "content": " def test_survey_form_save(self):\n form = SurveyForm(\n data={\n self.ice_cream_question.name: \"Strawberry\",\n self.summer_question.name: \"Swam in the lake\",\n self.season_question.name: self.summer.pk,\n self.city_question.name: [self.nashville.pk, self.boston.pk],\n self.golf_question.name: True\n },\n survey=self.survey\n )\n self.assertTrue(form.is_valid())\n form.save(self.entry.surveyinstance)\n answers = self.entry.surveyinstance.answers.all()\n self.assertEquals(answers.count(), 5)\n self.assertEquals(answers.get(question=self.ice_cream_question).value, \"Strawberry\")\n self.assertEquals(answers.get(question=self.summer_question).value, \"Swam in the lake\")\n self.assertEquals(answers.get(question=self.season_question).value, self.summer.label)\n self.assertTrue(\n self.nashville.label in answers.get(question=self.city_question).value\n )\n self.assertTrue(\n self.boston.label in answers.get(question=self.city_question).value\n )\n self.assertTrue(answers.get(question=self.golf_question).value_boolean)", "metadata": "root.SurveyTests.test_survey_form_save", "header": "['class', 'SurveyTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 100 } ]

[ { "span": "self.assertTrue(\n self.nashville.label in answers.get(question=self.city_question).value\n )", "start_line": 118, "start_column": 8, "end_line": 120, "end_column": 9 }, { "span": "self.assertTrue(\n self.boston.label in answers.get(question=self.city_question).value\n )", "start_line": 121, "start_column": 8, "end_line": 123, "end_column": 9 } ]

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[ { "content": "#!/usr/bin/python\n#\n# Copyright 2014 Google Inc. All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\n\"\"\"Produce reports showing counts of user by org.\n\nMakes use of the report_users command. Produces multiple csv files\nthat summarize domain user counts by organizational unit.\n\"\"\"\n\nimport sys\n\n# setup_path required to allow imports from component dirs (e.g. utils)\n# and lib (where the OAuth and Google API Python Client modules reside).\nimport setup_path # pylint: disable=unused-import,g-bad-import-order\n\nfrom utils import admin_api_tool_errors\nfrom utils import auth_helper # pylint: disable=unused-import\nfrom utils import cmd_utils\nfrom utils import common_flags\nfrom utils import file_manager\nfrom utils import log_utils\nfrom utils import report_utils\n\n\n_REPORT_USERS_ORGS_FILE_NAME = '_report_users_orgs.csv.tmp'\n_REPORT_ORGS_BY_ACTIVE_FILE_NAME = 'orgs_by_active.csv'\n_REPORT_ORGS_BY_OU_FILE_NAME = 'orgs_by_ou.csv'\n\n\n_REPORT_BY_ACTIVE_HEADER = ['ACTIVE', 'SUSPENDED', 'OU']\n_REPORT_BY_ORG_HEADER = ['OU', 'ACTIVE', 'SUSPENDED']\n_REPORT_FILTER_FIELDS = ['orgUnitPath', 'suspended']\n\n\nFILE_MANAGER = file_manager.FILE_MANAGER\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nif __name__ == '__main__':\n main(sys.argv[1:])\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def GenerateUserReport(flags):\n \"\"\"Run the command to create the report file.\n\n report_users error-exits if the file is found without --force.\n Instead, re-process the existing file in that situation.\n\n Args:\n flags: Argparse flags object with apps_domain, resume and first_n.\n \"\"\"\n if FILE_MANAGER.FileExists(_REPORT_USERS_ORGS_FILE_NAME) and not flags.force:\n print 'Showing counts from existing file.'\n return\n\n print 'Generating new counts...'\n\n arg_list = [\n '--output_file=%s' % _REPORT_USERS_ORGS_FILE_NAME,\n '--csv_fields=%s' % ','.join(_REPORT_FILTER_FIELDS),\n ]\n for flag_value, flag_string in [\n (flags.apps_domain, '--apps_domain=%s' % flags.apps_domain),\n (flags.force, '--force'),\n (flags.verbose, '--verbose')]:\n if flag_value:\n arg_list.append(flag_string)\n try:\n cmd_utils.RunPyCmd('report_users.py', arg_list)\n except admin_api_tool_errors.AdminAPIToolCmdError as e:\n log_utils.LogError('Unable to generate org data.', e)\n sys.exit(1)", "metadata": "root.GenerateUserReport", "header": "['module', '___EOS___']", "index": 50 }, { "content": "def _ReadAndCountUsersOrgsCSV():\n \"\"\"Helper to read the users org report for summarizing.\n\n Always expects to find a header row since that's how we write it.\n\n Returns:\n Tuple of 2 counters: (#active_users, #suspended_users)\n \"\"\"\n csv_rows = FILE_MANAGER.ReadCsvFile(_REPORT_USERS_ORGS_FILE_NAME)\n if csv_rows[0] != _REPORT_FILTER_FIELDS:\n log_utils.LogError('Unexpected header in file %s. Try running with '\n '--force to generate a new file.' %\n FILE_MANAGER.BuildFullPathToFileName(\n _REPORT_USERS_ORGS_FILE_NAME))\n sys.exit(1)\n\n active_user_count = report_utils.Counter()\n suspended_user_count = report_utils.Counter()\n for org, suspended in csv_rows[1:]:\n if suspended == 'True':\n suspended_user_count.Increment(org)\n else:\n active_user_count.Increment(org)\n return active_user_count, suspended_user_count", "metadata": "root._ReadAndCountUsersOrgsCSV", "header": "['module', '___EOS___']", "index": 82 }, { "content": "def SummarizeUserOrgReport():\n \"\"\"Read the generated csv file and count members in orgs.\n\n Returns:\n Tuple of 2 lists of tuples (OU, #active, #suspended):\n -List of tuples ordered by #active_users descending\n -List of tuples ordered by OU name alphabetically ascending.\n\n For example, a simple result (a domain with 1 Org Unit) might be:\n [(929, 0, '/')], [('/', 929, 0)]\n \"\"\"\n # This is tricky because a domain may be entirely active users, suspended\n # users or (most commonly) a mix of both. Therefore need to handle cases\n # where an entire subdomain is suspended users carefully.\n active_user_counter, suspended_user_counter = _ReadAndCountUsersOrgsCSV()\n # A list of the most common organizations (subdomains) ordered by a count\n # of subdomain members descending.\n list_of_org_data_sorted_by_active_user_descending = []\n for org, active_user_count in active_user_counter.FilterAndSortMostCommon():\n suspended_user_count = suspended_user_counter.data.get(org, 0)\n list_of_org_data_sorted_by_active_user_descending.append(\n (active_user_count, suspended_user_count, org))\n\n # A list of all organizations (subdomains) ordered by name.\n org_unit_names = set(active_user_counter.data.keys() +\n suspended_user_counter.data.keys())\n list_of_org_data_sorted_by_org_unit_name_alphabetically = []\n for org in sorted(org_unit_names):\n active_user_count = active_user_counter.data.get(org, 0)\n suspended_user_count = suspended_user_counter.data.get(org, 0)\n list_of_org_data_sorted_by_org_unit_name_alphabetically.append(\n (org, active_user_count, suspended_user_count))\n return (list_of_org_data_sorted_by_active_user_descending,\n list_of_org_data_sorted_by_org_unit_name_alphabetically)", "metadata": "root.SummarizeUserOrgReport", "header": "['module', '___EOS___']", "index": 108 }, { "content": "def PrintOrgCounts(orgs_by_active, orgs_by_ou):\n \"\"\"Print org groups with related counts of users.\n\n Args:\n orgs_by_active: List of tuples (#active, #suspended, org) order by #active.\n orgs_by_ou: List of tuples (org, #active, #suspended) ordered by ou.\n \"\"\"\n print report_utils.BORDER\n # Order by #active descending.\n print ','.join(_REPORT_BY_ACTIVE_HEADER)\n for active, suspended, org in orgs_by_active:\n print '%d,%d,%s' % (active, suspended, org)\n print report_utils.BORDER\n # Order by OU ascending.\n print ','.join(_REPORT_BY_ORG_HEADER)\n for org, active, suspended in orgs_by_ou:\n print '%s,%d,%d' % (org, active, suspended)\n print report_utils.BORDER", "metadata": "root.PrintOrgCounts", "header": "['module', '___EOS___']", "index": 144 }, { "content": "def WriteOrgCounts(orgs_by_active, orgs_by_ou, flags):\n \"\"\"Write org counts to two csv files for later use.\n\n Args:\n orgs_by_active: List of tuples (#active, #suspended, org) order by #active.\n orgs_by_ou: List of tuples (org, #active, #suspended) ordered by ou.\n flags: Argparse flags object with apps_domain, resume and first_n.\n \"\"\"\n try:\n filename_path = FILE_MANAGER.WriteCSVFile(_REPORT_ORGS_BY_ACTIVE_FILE_NAME,\n orgs_by_active,\n _REPORT_BY_ACTIVE_HEADER,\n overwrite_ok=flags.force)\n print 'Wrote report of org users sorted by active user count: %s.' % (\n filename_path)\n filename_path = FILE_MANAGER.WriteCSVFile(_REPORT_ORGS_BY_OU_FILE_NAME,\n orgs_by_ou,\n _REPORT_BY_ORG_HEADER,\n overwrite_ok=flags.force)\n print 'Wrote report of org users sorted by org-unt count: %s.' % (\n filename_path)\n except admin_api_tool_errors.AdminAPIToolFileError:\n log_utils.LogError('CSV file(s) already exist. Use --force to overwrite.')\n sys.exit(1)", "metadata": "root.WriteOrgCounts", "header": "['module', '___EOS___']", "index": 164 }, { "content": "def AddFlags(arg_parser):\n \"\"\"Handle command line flags unique to this script.\n\n Args:\n arg_parser: object from argparse.ArgumentParser() to accumulate flags.\n \"\"\"\n common_flags.DefineAppsDomainFlagWithDefault(arg_parser)\n common_flags.DefineForceFlagWithDefaultFalse(arg_parser)\n common_flags.DefineVerboseFlagWithDefaultFalse(arg_parser)\n\n arg_parser.add_argument('--csv', action='store_true', default=False,\n help='Output results to a csv file.')", "metadata": "root.AddFlags", "header": "['module', '___EOS___']", "index": 190 }, { "content": "def main(argv):\n \"\"\"Run report_users, parse and print a summary of its results.\"\"\"\n flags = common_flags.ParseFlags(argv, 'Create a report of org counts.',\n AddFlags)\n if flags.csv:\n FILE_MANAGER.ExitIfCannotOverwriteFile(_REPORT_ORGS_BY_ACTIVE_FILE_NAME,\n overwrite_ok=flags.force)\n FILE_MANAGER.ExitIfCannotOverwriteFile(_REPORT_ORGS_BY_OU_FILE_NAME,\n overwrite_ok=flags.force)\n GenerateUserReport(flags)\n orgs_by_active, orgs_by_ou = SummarizeUserOrgReport()\n PrintOrgCounts(orgs_by_active, orgs_by_ou)\n if flags.csv:\n WriteOrgCounts(orgs_by_active, orgs_by_ou, flags)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 204 } ]

[ { "span": "import setup_path ", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 17 }, { "span": "from utils import auth_helper ", "start_line": 29, "start_column": 0, "end_line": 29, "end_column": 29 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def __getslice__(self, i, j):\n return self.__wrapped__[i:j]", "metadata": "root.ObjectProxy.__getslice__", "header": "['class', 'ObjectProxy', '(', 'with_metaclass', '(', '_ObjectProxyMetaType', ')', ')', ':', '___EOS___']", "index": 394 }, { "content": " def __setslice__(self, i, j, value):\n self.__wrapped__[i:j] = value", "metadata": "root.ObjectProxy.__setslice__", "header": "['class', 'ObjectProxy', '(', 'with_metaclass', '(', '_ObjectProxyMetaType', ')', ')', ':', '___EOS___']", "index": 397 }, { "content": " def __delslice__(self, i, j):\n del self.__wrapped__[i:j]", "metadata": "root.ObjectProxy.__delslice__", "header": "['class', 'ObjectProxy', '(', 'with_metaclass', '(', '_ObjectProxyMetaType', ')', ')', ':', '___EOS___']", "index": 400 } ]

[ { "span": "def __getslice__(self, i, j):", "start_line": 394, "start_column": 4, "end_line": 394, "end_column": 33 }, { "span": "def __setslice__(self, i, j, value):", "start_line": 397, "start_column": 4, "end_line": 397, "end_column": 40 }, { "span": "def __delslice__(self, i, j):", "start_line": 400, "start_column": 4, "end_line": 400, "end_column": 33 } ]

[]

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[ { "content": " def test_slicing_operations_1(self):\n a = \"testing\"\n l = len(a)\n with self.create_executor() as fora:\n results = []\n def f(idx1, idx2):\n try:\n return (\"OK\", a[idx1:idx2])\n except:\n return \"FAIL\"\n\n for idx1 in range(-l - 1, l + 1):\n for idx2 in range(-l - 1, l + 1):\n results = results + [f(idx1, idx2)]\n\n return results\n\n self.equivalentEvaluationTest(f)", "metadata": "root.InMemoryExecutorTestCases.test_slicing_operations_1", "header": "['class', 'InMemoryExecutorTestCases', '(', 'ExecutorTestCases', '.', 'ExecutorTestCases', ')', ':', '___EOS___']", "index": 220 }, { "content": " def test_tuple_getitem_exhaustive_1(self):\n sz = 3\n def f():\n x = tuple(range(sz))\n def tryGetItem(ix):\n try:\n return (\"OK\", x[ix])\n except Exception as e:\n return \"except\"\n\n if isinstance(e, ValueError):\n return \"ValueError\"\n elif isinstance(e, IndexError):\n return \"IndexError\"\n elif isinstance(e, TypeError):\n return \"TypeError\"\n raise e\n\n indices = range(-sz, sz) + [sz - 10, sz + 10, 1.0, None]\n\n res = []\n for ix in indices:\n res = res + [tryGetItem(ix)]\n\n return res\n\n self.equivalentEvaluationTest(f)", "metadata": "root.InMemoryExecutorTestCases.test_tuple_getitem_exhaustive_1", "header": "['class', 'InMemoryExecutorTestCases', '(', 'ExecutorTestCases', '.', 'ExecutorTestCases', ')', ':', '___EOS___']", "index": 427 } ]

[ { "span": "self.equivalentEvaluationTest(f)", "start_line": 237, "start_column": 8, "end_line": 237, "end_column": 40 }, { "span": "if isinstance(e, ValueError):", "start_line": 437, "start_column": 20, "end_line": 437, "end_column": 49 } ]

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[ { "content": "#!/usr/bin/python -u\n#\n# Python Bindings for XZ/LZMA backported from Python 3.3.0\n#\n# This file copyright (c) 2012 Peter Cock, p.j.a.cock@googlemail.com\n# See other files for separate copyright notices.\n\nimport sys, os\nfrom warnings import warn\n\nfrom distutils import log\nfrom distutils.command.build_ext import build_ext\nfrom distutils.core import setup\nfrom distutils.extension import Extension\n\n# We now extract the version number in backports/lzma/__init__.py\n# We can't use \"from backports import lzma\" then \"lzma.__version__\"\n# as that would tell us the version already installed (if any).\n__version__ = None\nwith open('backports/lzma/__init__.py') as handle:\n for line in handle:\n if (line.startswith('__version__')):\n exec(line.strip())\n break\nif __version__ is None:\n sys.stderr.write(\"Error getting __version__ from backports/lzma/__init__.py\\n\")\n sys.exit(1)\nprint(\"This is backports.lzma version %s\" % __version__)\n\npackages = [\"backports\", \"backports.lzma\"]\nhome = os.path.expanduser(\"~\")\nextens = [Extension('backports/lzma/_lzma',\n ['backports/lzma/_lzmamodule.c'],\n libraries = ['lzma'],\n include_dirs = [os.path.join(home, 'include'), '/opt/local/include', '/usr/local/include'],\n library_dirs = [os.path.join(home, 'lib'), '/opt/local/lib', '/usr/local/lib']\n )]\n\ndescr = \"Backport of Python 3.3's 'lzma' module for XZ/LZMA compressed files.\"\nlong_descr = \"\"\"This is a backport of the 'lzma' module included in Python 3.3 or later\nby Nadeem Vawda and Per Oyvind Karlsen, which provides a Python wrapper for XZ Utils\n(aka LZMA Utils v2) by Igor Pavlov.\n\nIn order to compile this, you will need to install XZ Utils from http://tukaani.org/xz/\n\"\"\"\n\nif sys.version_info < (2,6):\n sys.stderr.write(\"ERROR: Python 2.5 and older are not supported, and probably never will be.\\n\")\n sys.exit(1)\n\nsetup(\n name = \"backports.lzma\",\n version = __version__,\n description = descr,\n author = \"Peter Cock, based on work by Nadeem Vawda and Per Oyvind Karlsen\",\n author_email = \"p.j.a.cock@googlemail.com\",\n url = \"https://github.com/peterjc/backports.lzma\",\n license='3-clause BSD License',\n keywords = \"xz lzma compression decompression\",\n long_description = long_descr,\n classifiers = [\n 'Development Status :: 5 - Production/Stable',\n 'Programming Language :: Python',\n 'Programming Language :: Python :: 2.6',\n 'Programming Language :: Python :: 2.7',\n 'Programming Language :: Python :: 3',\n 'Topic :: Software Development :: Libraries :: Python Modules',\n 'Intended Audience :: Developers',\n 'License :: OSI Approved :: BSD License',\n #'Operating System :: OS Independent',\n 'Topic :: System :: Archiving :: Compression',\n ],\n packages = packages,\n namespace_packages = ['backports'],\n ext_modules = extens,\n cmdclass = {\n 'build_ext': build_ext,\n },\n)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "from warnings import warn", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 25 }, { "span": "from distutils import log", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 25 } ]

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[ { "content": " def test_list_supported_algorithms(self):\n algorithms = self.driver.list_supported_algorithms()\n\n self.assertTrue(Algorithm.ROUND_ROBIN in algorithms)\n self.assertTrue(Algorithm.LEAST_CONNECTIONS in algorithms)", "metadata": "root.GoGridTests.test_list_supported_algorithms", "header": "['class', 'GoGridTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 39 }, { "content": " def test_create_balancer_UNEXPECTED_ERROR(self):\n # Try to create new balancer and attach members with an IP address which\n # does not belong to this account\n GoGridLBMockHttp.type = 'UNEXPECTED_ERROR'\n\n try:\n self.driver.create_balancer(name='test2',\n port=80,\n protocol='http',\n algorithm=Algorithm.ROUND_ROBIN,\n members=(Member(None, '10.1.0.10', 80),\n Member(None, '10.1.0.11', 80))\n )\n except LibcloudError:\n e = sys.exc_info()[1]\n self.assertTrue(\n str(e).find('tried to add a member with an IP address not assigned to your account') != -1)\n else:\n self.fail('Exception was not thrown')", "metadata": "root.GoGridTests.test_create_balancer_UNEXPECTED_ERROR", "header": "['class', 'GoGridTests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 74 }, { "content": " def _api_grid_loadbalancer_add(self, method, url, body, headers):\n query = urlparse.urlparse(url).query\n self.assertTrue(query.find('loadbalancer.type=round+robin') != -1)\n\n body = self.fixtures.load('loadbalancer_add.json')\n return (httplib.OK, body, {}, httplib.responses[httplib.OK])", "metadata": "root.GoGridLBMockHttp._api_grid_loadbalancer_add", "header": "['class', 'GoGridLBMockHttp', '(', 'MockHttpTestCase', ')', ':', '___EOS___']", "index": 168 } ]

[ { "span": "self.assertTrue(Algorithm.ROUND_ROBIN in algorithms)", "start_line": 42, "start_column": 8, "end_line": 42, "end_column": 60 }, { "span": "self.assertTrue(Algorithm.LEAST_CONNECTIONS in algorithms)", "start_line": 43, "start_column": 8, "end_line": 43, "end_column": 66 }, { "span": "self.assertTrue(\n str(e).find('tried to add a member with an IP address not assigned to your account') != -1)", "start_line": 89, "start_column": 12, "end_line": 90, "end_column": 107 }, { "span": "self.assertTrue(query.find('loadbalancer.type=round+robin') != -1)", "start_line": 170, "start_column": 8, "end_line": 170, "end_column": 74 } ]

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[ { "content": "# encoding: utf-8\n\nimport re\nimport urllib\n\nfrom django import template\nfrom django.template.defaultfilters import stringfilter\nfrom django.template import Template, Variable, TemplateSyntaxError\nfrom django.http import HttpResponse\nfrom django.db.models.query import QuerySet\n\nfrom django.template.loader_tags import BlockNode, ExtendsNode\nfrom django.template import loader, Context, RequestContext, TextNode\n\nfrom djcommon.helpers import random_slice_list\n\nregister = template.Library()\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\ncleartags.is_safe = True\n\n\ncut.is_safe = True\n\nreplace.is_safe = True\n\nnowhitespace.is_safe = True\n\ncleanwhitespace.is_safe = True\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def render_block_to_string(template_name, block, dictionary=None, context_instance=None):\n \"\"\"\n Loads the given template_name and renders the given block with the given dictionary as\n context. Returns a string.\n \"\"\"\n import re\n\n dictionary = dictionary or {}\n t = get_template(template_name)\n if context_instance:\n context_instance.update(dictionary)\n else:\n context_instance = Context(dictionary)\n template_block = render_template_block(t, block, context_instance)\n return re.sub(r'\\s+', ' ', template_block)", "metadata": "root.render_block_to_string", "header": "['module', '___EOS___']", "index": 51 } ]

[ { "span": "import re", "start_line": 56, "start_column": 4, "end_line": 56, "end_column": 13 } ]

[ { "span": "import re", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 9 } ]

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"\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "clear", "tags_", "._", "is", "\\u", "safe_", "=_", "True_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "cut_", "._", "is", "\\u", "safe_", "=_", "True_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "replace_", "._", "is", "\\u", "safe_", "=_", "True_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "now", "hit", "espa", "ce_", "._", "is", "\\u", 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[ { "content": "import SimPEG\nfrom SimPEG import Utils, sp, np\nfrom Optimization import Remember, IterationPrinters, StoppingCriteria\nimport Directives\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class BaseInversion(object):\n \"\"\"\n\n Inversion Class.\n\n \"\"\"\n\n __metaclass__ = Utils.SimPEGMetaClass\n\n name = 'BaseInversion'\n\n debug = False #: Print debugging information\n\n counter = None #: Set this to a SimPEG.Utils.Counter() if you want to count things\n\n\n\n\n", "metadata": "root.BaseInversion", "header": "['module', '___EOS___']", "index": 6 }, { "content": " @property\n def directiveList(self):\n if getattr(self,'_directiveList', None) is None:\n self._directiveList = Directives.DirectiveList(inversion=self)\n return self._directiveList", "metadata": "root.BaseInversion.directiveList", "header": "['class', 'BaseInversion', '(', 'object', ')', ':', '___EOS___']", "index": 21 }, { "content": " @directiveList.setter\n def directiveList(self, value):\n if type(value) is list:\n value = Directives.DirectiveList(*value)\n assert isinstance(value, Directives.DirectiveList), 'Must be a DirectiveList'\n self._directiveList = value\n self._directiveList.inversion = self", "metadata": "root.BaseInversion.directiveList", "header": "['class', 'BaseInversion', '(', 'object', ')', ':', '___EOS___']", "index": 27 }, { "content": " def __init__(self, invProb, directiveList=[], **kwargs):\n self.directiveList = directiveList\n Utils.setKwargs(self, **kwargs)\n\n self.invProb = invProb\n\n self.opt = invProb.opt\n self.opt.callback = self._optCallback\n\n self.stoppers = [StoppingCriteria.iteration]\n\n # Check if we have inserted printers into the optimization\n if IterationPrinters.phi_d not in self.opt.printers:\n self.opt.printers.insert(1,IterationPrinters.beta)\n self.opt.printers.insert(2,IterationPrinters.phi_d)\n self.opt.printers.insert(3,IterationPrinters.phi_m)", "metadata": "root.BaseInversion.__init__", "header": "['class', 'BaseInversion', '(', 'object', ')', ':', '___EOS___']", "index": 35 }, { "content": " @Utils.timeIt\n def run(self, m0):\n \"\"\"run(m0)\n\n Runs the inversion!\n\n \"\"\"\n self.invProb.startup(m0)\n self.directiveList.call('initialize')\n self.m = self.opt.minimize(self.invProb.evalFunction, self.invProb.curModel)\n self.directiveList.call('finish')\n\n return self.m", "metadata": "root.BaseInversion.run", "header": "['class', 'BaseInversion', '(', 'object', ')', ':', '___EOS___']", "index": 52 }, { "content": " def _optCallback(self, xt):\n self.directiveList.call('endIter')", "metadata": "root.BaseInversion._optCallback", "header": "['class', 'BaseInversion', '(', 'object', ')', ':', '___EOS___']", "index": 66 } ]

[ { "span": "import SimPEG", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 13 }, { "span": "from SimPEG import Utils, sp, np", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 32 }, { "span": "from Optimization import Remember, IterationPrinters, StoppingCriteria", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 70 } ]

[]

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[ { "content": " def loadFile(self,filename,sigset_dir=None):\n '''\n Loads a BEE matrix from a file.\n '''\n self.filename = filename\n self.shortname = os.path.basename(filename)\n \n # open the file for reading\n f = open(filename,'rb')\n \n #read the distance matrix header (first four lines of the file)\n \n line = f.readline()\n # Test line endings\n if len(line) != 3 or line[-1] != \"\\x0a\":\n # Note: \\x0a is the \"official\" line ending char as of \n # \\x0d is also supported in the Java and C++ tools but it will cause a failure in this implementation.\n # see IARPA BEST - Challenge Problem Specification and Executable Application Program Interface\n # thanks to Todd Scruggs\n raise ValueError(\"Unsupported line ending. Should two characters followed by LF (0x0A).\")\n # Check Format\n line = line.strip()\n if line not in ['D2','S2','M2']:\n raise ValueError('Unknown matrix Format \"%s\". Should be D2, S2, or M2.'%line)\n \n self.is_distance = True\n if line[0][0] == 'S':\n self.is_distance = False\n\n # read and process line 2 (target sigset)\n line = f.readline().split()\n self.target_filename = os.path.basename(line[0])\n\n # read and process line 3 (query sigset)\n line = f.readline().split()\n self.query_filename = os.path.basename(line[0])\n\n # read and process line 4 (MF n_queries n_targets magic_number)\n line = f.readline().split()\n assert line[0] in ['MF','MB']\n file_type = line[0][1]\n \n self.n_queries = int(line[1])\n self.n_targets = int(line[2])\n \n big_endian = struct.pack(\">I\",0x12345678)\n little_endian = struct.pack(\"<I\",0x12345678)\n \n if line[3] != big_endian and line[3] != little_endian:\n print \"Warning unsupported magic number is BEE matrix: 0x%s\"%binascii.hexlify(line[3])\n \n self.magic_number = struct.unpack_from(\"=I\",line[3])[0]\n if self.magic_number == 0x12345678:\n byteswap = False\n elif self.magic_number == 0x78563412:\n byteswap = True\n else:\n raise ValueError(\"Unknown magic number in similarity matrix.\")\n \n # Read the matrix data\n if file_type=='F':\n self.matrix = np.fromfile(f,dtype=np.float32)\n elif file_type=='B':\n self.matrix = np.fromfile(f,dtype=np.byte)\n else:\n raise TypeError(\"Unknown matrix file_type: %s\"%file_type)\n \n if file_type=='F' and byteswap:\n self.matrix = self.matrix.byteswap()\n assert self.matrix.shape[0] == self.n_targets*self.n_queries\n self.matrix = self.matrix.reshape(self.n_queries,self.n_targets)\n \n # Try to read the sigsets.\n if sigset_dir == None:\n sigset_dir = os.path.dirname(self.filename)\n self.queries = None\n try:\n ss_name = os.path.join(sigset_dir,self.query_filename)\n self.queries = parseSigSet(ss_name)\n assert len(self.queries) == self.n_queries\n except:\n pass\n #print \"Warning: cound not read the query sigset for distance matrix %s\"%self.shortname\n #print \" SigSet File:\",ss_name\n #print \" Expected:\",self.n_queries,\"Read:\",len(self.queries)\n \n self.targets = None\n try:\n ss_name = os.path.join(sigset_dir,self.target_filename)\n self.targets = parseSigSet(ss_name)\n\n assert len(self.targets) == self.n_targets\n except:\n pass\n #print \"Warning: cound not read the target sigset for distance matrix %s\"%self.shortname\n #print \" SigSet File:\",ss_name\n #print \" Expected:\",self.n_targets,\"Read:\",len(self.targets)", "metadata": "root.BEEDistanceMatrix.loadFile", "header": "['class', 'BEEDistanceMatrix', ':', '___EOS___']", "index": 247 }, { "content": " def histogram(self,value_range=None,bins=100,normed=True,mask=None):\n match_scores = self.getMatchScores(mask=mask)\n nonmatch_scores = self.getNonMatchScores(mask=mask)\n if value_range == None:\n value_range = (self.matrix.min(),self.matrix.max())\n\n match_counts,_ = np.histogram(match_scores,range=value_range,bins=bins,normed=normed)\n nonmatch_counts,vals = np.histogram(nonmatch_scores,range=value_range,bins=bins,normed=normed)\n \n hist = pv.Table()\n for i in range(len(match_counts)):\n hist[i,'min'] = vals[i]\n hist[i,'center'] = 0.5*(vals[i]+vals[i+1])\n hist[i,'max'] = vals[i+1]\n hist[i,'match_count'] = match_counts[i]\n hist[i,'nonmatch_count'] = nonmatch_counts[i]\n return hist", "metadata": "root.BEEDistanceMatrix.histogram", "header": "['class', 'BEEDistanceMatrix', ':', '___EOS___']", "index": 568 } ]

[ { "span": "sigset_dir == None:", "start_line": 320, "start_column": 11, "end_line": 320, "end_column": 29 }, { "span": "value_range == None:", "start_line": 571, "start_column": 11, "end_line": 571, "end_column": 30 } ]

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