Datasets:

thepurpleowl

/

codequeries

like 6

[ { "content": "## Copyright (c) 2012-2016 Aldebaran Robotics. All rights reserved.\n## Use of this source code is governed by a BSD-style license that can be\n## found in the COPYING file.\n\n\"\"\" Launch automatic tests -- deprecated, use `qitest run` instead\n\"\"\"\n\nimport argparse\nimport os\nimport sys\n\nfrom qisys import ui\nimport qisys.script\nimport qisys.parsers\nimport qibuild.parsers\nimport qitest.parsers\nimport qitest.actions.run\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def configure_parser(parser):\n \"\"\"Configure parser for this action\"\"\"\n qitest.parsers.test_parser(parser)\n qibuild.parsers.project_parser(parser)\n qisys.parsers.build_parser(parser, include_worktree_parser=False)\n parser.add_argument(\"-l\", \"--list\", dest=\"list\", action=\"store_true\",\n help=\"List what tests would be run\")", "metadata": "root.configure_parser", "header": "['module', '___EOS___']", "index": 18 }, { "content": "def do(args):\n \"\"\"Main entry point\"\"\"\n if args.list:\n ui.warning(\"`qibuild test --list` is deprecated, use `qitest list` instead\")\n qisys.script.run_action(\"qitest.actions.list\", forward_args=args)\n else:\n projects = args.projects\n ui.warning(\"`qibuild test` is deprecated, use `qitest run` instead\")\n qisys.script.run_action(\"qitest.actions.run\", args=projects,\n forward_args=args)", "metadata": "root.do", "header": "['module', '___EOS___']", "index": 27 } ]

[ { "span": "import argparse", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 15 }, { "span": "import os", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 9 }, { "span": "import sys", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 10 } ]

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[ { "content": "\n# prevent DeprecationWarning for more recent django versions\ntry:\n from django.conf.urls import patterns, url\nexcept ImportError:\n from django.conf.urls.defaults import patterns, url, handler404, handler500\n\nfrom django.http import HttpResponse\nfrom django.shortcuts import render_to_response\nfrom django.template import RequestContext\n\n# Uncomment the next two lines to enable the admin:\n# from django.contrib import admin\n# admin.autodiscover()\n\n\n\nurlpatterns = patterns('',\n url(r'^$', simple_method_test, name='simple-method-test'),\n url(r'^template/(.*)$', simple_template_render, name='simple-template-test'),\n url(r'^check-password/$', 'testapp_tests.views.check_password', name='check_password'),\n url(r'^search/$', 'testapp_tests.views.search', name='search'),\n url(r'^login/$', 'django.contrib.auth.views.login', name='auth_login'),\n url(r'^set-session/$', 'testapp_tests.views.set_session', name='set_session'),\n url(r'^protected/$', 'testapp_tests.views.protected', name='protected'),\n url(r'^redirect-to-protected/$', 'testapp_tests.views.redirect_to_protected', name='redirect-to-protected'),\n)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def simple_method_test(request):\n return HttpResponse(str(request.method))", "metadata": "root.simple_method_test", "header": "['module', '___EOS___']", "index": 15 }, { "content": "def simple_template_render(request, template_name):\n return render_to_response(template_name, {\n 'foo': ('a', 'b', 'c'),\n 'bar': True,\n 'spam': None,\n }, context_instance=RequestContext(request))", "metadata": "root.simple_template_render", "header": "['module', '___EOS___']", "index": 18 } ]

[ { "span": "from django.conf.urls.defaults import patterns, url, handler404, handler500", "start_line": 5, "start_column": 4, "end_line": 5, "end_column": 79 } ]

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[ { "content": " def testNotAnArArchive(self):\n a = ar.Archive(self.getArchiveFile('unstripped_archive.o'))\n def parseArchive():\n b = [x.name for x in a]\n self.assertRaises(ar.ArchiveError, parseArchive)", "metadata": "root.ArTest.testNotAnArArchive", "header": "['class', 'ArTest', '(', 'rephelp', '.', 'RepositoryHelper', ')', ':', '___EOS___']", "index": 66 }, { "content": " def testTruncatedArchive(self):\n a = ar.Archive(self.getArchiveFile('testshortheader.a'))\n def parseArchive():\n b = [x.name for x in a]\n self.assertRaises(ar.ArchiveError, parseArchive)", "metadata": "root.ArTest.testTruncatedArchive", "header": "['class', 'ArTest', '(', 'rephelp', '.', 'RepositoryHelper', ')', ':', '___EOS___']", "index": 72 } ]

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[]

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[ { "content": "\tdef test_simple2(self):\n\t\tG = DiGraph()\n\t\tn1 = G.add_node()\n\t\tn2 = G.add_node()\n\t\tG.add_edge_(n1,n2)\n\n\t\tfor i in range(2,100):\n\t\t\tn = G.add_node()\n\t\t\tG.add_edge_(n1,n)\n\t\t\tG.add_edge_(n,n-1)\n\n\t\tG.add_edge_(n2,99)\t\n\t\tx = clustering.lcc(G)", "metadata": "root.LocalClusteringCoefficientTestCase.test_simple2", "header": "['class', 'LocalClusteringCoefficientTestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 89 }, { "content": "\tdef test_simple2(self):\n\t\tG = DiGraph()\n\t\tn1 = G.add_node()\n\t\tn2 = G.add_node()\n\t\tG.add_edge_(n1,n2)\n\n\t\tfor i in range(2,100):\n\t\t\tn = G.add_node()\n\t\t\tG.add_edge_(n1,n)\n\t\t\tG.add_edge_(n,n-1)\n\n\t\tG.add_edge_(n2,99)\t\n\t\tx = clustering.gcc(G)", "metadata": "root.GlobalClusteringCoefficientTestCase.test_simple2", "header": "['class', 'GlobalClusteringCoefficientTestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 141 } ]

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[ { "content": " def coverage(self):\n \"\"\"\n Will return a DataFrame with coverage information (if available) for each repo in the project).\n\n If there is a .coverage file available, this will attempt to form a DataFrame with that information in it, which\n will contain the columns:\n\n * repository\n * filename\n * lines_covered\n * total_lines\n * coverage\n\n If it can't be found or parsed, an empty DataFrame of that form will be returned.\n\n :return: DataFrame\n \"\"\"\n\n df = pd.DataFrame(columns=['filename', 'lines_covered', 'total_lines', 'coverage', 'repository'])\n\n for repo in self.repos:\n try:\n cov = repo.coverage()\n cov['repository'] = repo._repo_name()\n df = df.append(cov)\n except GitCommandError as err:\n print('Warning! Repo: %s seems to not have coverage' % (repo, ))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.coverage", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 79 }, { "content": " def file_change_rates(self, branch='master', limit=None, extensions=None, ignore_dir=None, coverage=False, days=None):\n \"\"\"\n This function will return a DataFrame containing some basic aggregations of the file change history data, and\n optionally test coverage data from a coverage_data.py .coverage file. The aim here is to identify files in the\n project which have abnormal edit rates, or the rate of changes without growing the files size. If a file has\n a high change rate and poor test coverage, then it is a great candidate for writing more tests.\n\n :param branch: (optional, default=master) the branch to return commits for\n :param limit: (optional, default=None) a maximum number of commits to return, None for no limit\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param coverage: (optional, default=False) a bool for whether or not to attempt to join in coverage data.\n :param days: (optional, default=None) number of days to return if limit is None\n :return: DataFrame\n \"\"\"\n\n columns = ['unique_committers', 'abs_rate_of_change', 'net_rate_of_change', 'net_change', 'abs_change', 'edit_rate', 'repository']\n if coverage:\n columns += ['lines_covered', 'total_lines', 'coverage']\n df = pd.DataFrame(columns=columns)\n\n for repo in self.repos:\n try:\n fcr = repo.file_change_rates(\n branch=branch,\n limit=limit,\n extensions=extensions,\n ignore_dir=ignore_dir,\n coverage=coverage,\n days=days\n )\n fcr['repository'] = repo._repo_name()\n df = df.append(fcr)\n except GitCommandError as err:\n print('Warning! Repo: %s seems to not have the branch: %s' % (repo, branch))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.file_change_rates", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 112 }, { "content": " def hours_estimate(self, branch='master', grouping_window=0.5, single_commit_hours=0.5, limit=None, extensions=None, ignore_dir=None, days=None, committer=True, by=None):\n \"\"\"\n inspired by: https://github.com/kimmobrunfeldt/git-hours/blob/8aaeee237cb9d9028e7a2592a25ad8468b1f45e4/index.js#L114-L143\n\n Iterates through the commit history of repo to estimate the time commitement of each author or committer over\n the course of time indicated by limit/extensions/days/etc.\n\n :param branch: the branch to return commits for\n :param limit: (optional, default=None) a maximum number of commits to return, None for no limit\n :param grouping_window: (optional, default=0.5 hours) the threhold for how close two commits need to be to consider them part of one coding session\n :param single_commit_hours: (optional, default 0.5 hours) the time range to associate with one single commit\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param days: (optional, default=None) number of days to return, if limit is None\n :param committer: (optional, default=True) whether to use committer vs. author\n :return: DataFrame\n \"\"\"\n\n if limit is not None:\n limit = int(limit / len(self.repo_dirs))\n\n if committer:\n com = 'committer'\n else:\n com = 'author'\n\n df = pd.DataFrame(columns=[com, 'hours', 'repository'])\n\n for repo in self.repos:\n try:\n ch = repo.hours_estimate(\n branch,\n grouping_window=grouping_window,\n single_commit_hours=single_commit_hours,\n limit=limit,\n extensions=extensions,\n ignore_dir=ignore_dir,\n days=days,\n committer=committer\n )\n ch['repository'] = repo._repo_name()\n df = df.append(ch)\n except GitCommandError as err:\n print('Warning! Repo: %s seems to not have the branch: %s' % (repo, branch))\n pass\n\n df.reset_index()\n\n if by == 'committer' or by == 'author':\n df = df.groupby(com).agg({'hours': sum})\n df = df.reset_index()\n elif by == 'project':\n df = df.groupby('repository').agg({'hours': sum})\n df = df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.hours_estimate", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 153 }, { "content": " def commit_history(self, branch, limit=None, extensions=None, ignore_dir=None, days=None):\n \"\"\"\n Returns a pandas DataFrame containing all of the commits for a given branch. The results from all repositories\n are appended to each other, resulting in one large data frame of size <limit>. If a limit is provided, it is\n divided by the number of repositories in the project directory to find out how many commits to pull from each\n project. Future implementations will use date ordering across all projects to get the true most recent N commits\n across the project.\n\n Included in that DataFrame will be the columns:\n\n * repository\n * date (index)\n * author\n * committer\n * message\n * lines\n * insertions\n * deletions\n * net\n\n :param branch: the branch to return commits for\n :param limit: (optional, default=None) a maximum number of commits to return, None for no limit\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param days: (optional, default=None) number of days to return if limit is None\n :return: DataFrame\n \"\"\"\n\n if limit is not None:\n limit = int(limit / len(self.repo_dirs))\n\n df = pd.DataFrame(columns=['author', 'committer', 'message', 'lines', 'insertions', 'deletions', 'net'])\n\n for repo in self.repos:\n try:\n ch = repo.commit_history(branch, limit=limit, extensions=extensions, ignore_dir=ignore_dir, days=days)\n ch['repository'] = repo._repo_name()\n df = df.append(ch)\n except GitCommandError as err:\n print('Warning! Repo: %s seems to not have the branch: %s' % (repo, branch))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.commit_history", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 210 }, { "content": " def file_change_history(self, branch='master', limit=None, extensions=None, ignore_dir=None, days=None):\n \"\"\"\n Returns a DataFrame of all file changes (via the commit history) for the specified branch. This is similar to\n the commit history DataFrame, but is one row per file edit rather than one row per commit (which may encapsulate\n many file changes). Included in the DataFrame will be the columns:\n\n * repository\n * date (index)\n * author\n * committer\n * message\n * filename\n * insertions\n * deletions\n\n :param branch: the branch to return commits for\n :param limit: (optional, default=None) a maximum number of commits to return, None for no limit\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param days: (optional, default=None) number of days to return if limit is None\n :return: DataFrame\n \"\"\"\n\n if limit is not None:\n limit = int(limit / len(self.repo_dirs))\n\n df = pd.DataFrame(columns=['repository', 'date', 'author', 'committer', 'message', 'rev', 'filename', 'insertions', 'deletions'])\n\n for repo in self.repos:\n try:\n ch = repo.file_change_history(\n branch,\n limit=limit,\n extensions=extensions,\n ignore_dir=ignore_dir,\n days=days\n )\n ch['repository'] = repo._repo_name()\n df = df.append(ch)\n except GitCommandError as err:\n print('Warning! Repo: %s seems to not have the branch: %s' % (repo, branch))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.file_change_history", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 256 }, { "content": " def blame(self, extensions=None, ignore_dir=None, committer=True, by='repository'):\n \"\"\"\n Returns the blame from the current HEAD of the repositories as a DataFrame. The DataFrame is grouped by committer\n name, so it will be the sum of all contributions to all repositories by each committer. As with the commit history\n method, extensions and ignore_dirs parameters can be passed to exclude certain directories, or focus on certain\n file extensions. The DataFrame will have the columns:\n\n * committer\n * loc\n\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param committer: (optional, default=True) true if committer should be reported, false if author\n :param by: (optional, default=repository) whether to group by repository or by file\n :return: DataFrame\n \"\"\"\n\n df = None\n\n for repo in self.repos:\n try:\n if df is None:\n df = repo.blame(extensions=extensions, ignore_dir=ignore_dir, committer=committer, by=by)\n else:\n df = df.append(repo.blame(extensions=extensions, ignore_dir=ignore_dir, committer=committer, by=by))\n except GitCommandError as err:\n print('Warning! Repo: %s couldnt be blamed' % (repo, ))\n pass\n\n df = df.reset_index(level=1)\n df = df.reset_index(level=1)\n if committer:\n if by == 'repository':\n df = df.groupby('committer').agg({'loc': np.sum})\n elif by == 'file':\n df = df.groupby(['committer', 'file']).agg({'loc': np.sum})\n else:\n if by == 'repository':\n df = df.groupby('author').agg({'loc': np.sum})\n elif by == 'file':\n df = df.groupby(['author', 'file']).agg({'loc': np.sum})\n\n df = df.sort_values(by=['loc'], ascending=False)\n\n return df", "metadata": "root.ProjectDirectory.blame", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 303 }, { "content": " def file_detail(self, extensions=None, ignore_dir=None, rev='HEAD', committer=True):\n \"\"\"\n Returns a table of all current files in the repos, with some high level information about each file (total LOC,\n file owner, extension, most recent edit date, etc.).\n\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param committer: (optional, default=True) true if committer should be reported, false if author\n :return:\n \"\"\"\n\n df = None\n\n for repo in self.repos:\n try:\n if df is None:\n df = repo.file_detail(extensions=extensions, ignore_dir=ignore_dir, committer=committer, rev=rev)\n df['repository'] = repo._repo_name()\n else:\n chunk = repo.file_detail(extensions=extensions, ignore_dir=ignore_dir, committer=committer, rev=rev)\n chunk['repository'] = repo._repo_name()\n df = df.append(chunk)\n except GitCommandError as err:\n print('Warning! Repo: %s couldnt be inspected' % (repo, ))\n pass\n\n df = df.reset_index(level=1)\n df = df.set_index(['file', 'repository'])\n return df", "metadata": "root.ProjectDirectory.file_detail", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 349 }, { "content": " def branches(self):\n \"\"\"\n Returns a data frame of all branches in origin. The DataFrame will have the columns:\n\n * repository\n * local\n * branch\n\n :returns: DataFrame\n \"\"\"\n\n df = pd.DataFrame(columns=['repository', 'local', 'branch'])\n\n for repo in self.repos:\n try:\n df = df.append(repo.branches())\n except GitCommandError as err:\n print('Warning! Repo: %s couldn\\'t be inspected' % (repo, ))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.branches", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 379 }, { "content": " def revs(self, branch='master', limit=None, skip=None, num_datapoints=None):\n \"\"\"\n Returns a dataframe of all revision tags and their timestamps for each project. It will have the columns:\n\n * date\n * repository\n * rev\n\n :param branch: (optional, default 'master') the branch to work in\n :param limit: (optional, default None), the maximum number of revisions to return, None for no limit\n :param skip: (optional, default None), the number of revisions to skip. Ex: skip=2 returns every other revision, None for no skipping.\n :param num_datapoints: (optional, default=None) if limit and skip are none, and this isn't, then num_datapoints evenly spaced revs will be used\n\n :return: DataFrame\n \"\"\"\n\n if limit is not None:\n limit = math.floor(float(limit) / len(self.repos))\n\n if num_datapoints is not None:\n num_datapoints = math.floor(float(num_datapoints) / len(self.repos))\n\n df = pd.DataFrame(columns=['repository', 'rev'])\n\n for repo in self.repos:\n try:\n revs = repo.revs(branch=branch, limit=limit, skip=skip, num_datapoints=num_datapoints)\n revs['repository'] = repo._repo_name()\n df = df.append(revs)\n except GitCommandError as err:\n print('Warning! Repo: %s couldn\\'t be inspected' % (repo, ))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.revs", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 403 }, { "content": " def cumulative_blame(self, branch='master', extensions=None, ignore_dir=None, by='committer', limit=None, skip=None, num_datapoints=None, committer=True):\n \"\"\"\n Returns a time series of cumulative blame for a collection of projects. The goal is to return a dataframe for a\n collection of projects with the LOC attached to an entity at each point in time. The returned dataframe can be\n returned in 3 forms (switched with the by parameter, default 'committer'):\n\n * committer: one column per committer\n * project: one column per project\n * raw: one column per committed per project\n\n :param branch: (optional, default 'master') the branch to work in\n :param limit: (optional, default None), the maximum number of revisions to return, None for no limit\n :param skip: (optional, default None), the number of revisions to skip. Ex: skip=2 returns every other revision, None for no skipping.\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param num_datapoints: (optional, default=None) if limit and skip are none, and this isn't, then num_datapoints evenly spaced revs will be used\n :param committer: (optional, default=True) true if committer should be reported, false if author\n :param by: (optional, default='committer') whether to arrange the output by committer or project\n :return: DataFrame\n\n \"\"\"\n\n blames = []\n for repo in self.repos:\n try:\n blame = repo.cumulative_blame(\n branch=branch,\n extensions=extensions,\n ignore_dir=ignore_dir,\n limit=limit,\n skip=skip,\n num_datapoints=num_datapoints,\n committer=committer\n )\n blames.append((repo._repo_name(), blame))\n except GitCommandError as err:\n print('Warning! Repo: %s couldn\\'t be inspected' % (repo, ))\n pass\n\n global_blame = blames[0][1]\n global_blame.columns = [x + '__' + str(blames[0][0]) for x in global_blame.columns.values]\n blames = blames[1:]\n for reponame, blame in blames:\n blame.columns = [x + '__' + reponame for x in blame.columns.values]\n global_blame = pd.merge(global_blame, blame, left_index=True, right_index=True, how='outer')\n\n global_blame.fillna(method='pad', inplace=True)\n global_blame.fillna(0.0, inplace=True)\n\n if by == 'committer':\n committers = [(str(x).split('__')[0].lower().strip(), x) for x in global_blame.columns.values]\n\n if sys.version_info.major == 2:\n committer_mapping = dict([(c, [x[1] for x in committers if x[0] == c]) for c in set([x[0] for x in committers])])\n else:\n committer_mapping = {c: [x[1] for x in committers if x[0] == c] for c in {x[0] for x in committers}}\n\n for committer in committer_mapping.keys():\n global_blame[committer] = 0\n for col in committer_mapping.get(committer, []):\n global_blame[committer] += global_blame[col]\n\n global_blame = global_blame.reindex(columns=list(committer_mapping.keys()))\n elif by == 'project':\n projects = [(str(x).split('__')[1].lower().strip(), x) for x in global_blame.columns.values]\n\n if sys.version_info.major == 2:\n project_mapping = dict([(c, [x[1] for x in projects if x[0] == c]) for c in set([x[0] for x in projects])])\n else:\n project_mapping = {c: [x[1] for x in projects if x[0] == c] for c in {x[0] for x in projects}}\n\n for project in project_mapping.keys():\n global_blame[project] = 0\n for col in project_mapping.get(project, []):\n global_blame[project] += global_blame[col]\n\n global_blame = global_blame.reindex(columns=list(project_mapping.keys()))\n\n global_blame = global_blame[~global_blame.index.duplicated()]\n\n return global_blame", "metadata": "root.ProjectDirectory.cumulative_blame", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 440 }, { "content": " def tags(self):\n \"\"\"\n Returns a data frame of all tags in origin. The DataFrame will have the columns:\n\n * repository\n * tag\n\n :returns: DataFrame\n \"\"\"\n\n df = pd.DataFrame(columns=['repository', 'tag'])\n\n for repo in self.repos:\n try:\n df = df.append(repo.tags())\n except GitCommandError as err:\n print('Warning! Repo: %s couldn\\'t be inspected' % (repo, ))\n pass\n\n df.reset_index()\n\n return df", "metadata": "root.ProjectDirectory.tags", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 522 }, { "content": " def bus_factor(self, extensions=None, ignore_dir=None, by='projectd'):\n \"\"\"\n An experimental heuristic for truck factor of a repository calculated by the current distribution of blame in\n the repository's primary branch. The factor is the fewest number of contributors whose contributions make up at\n least 50% of the codebase's LOC\n\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n\n :return:\n \"\"\"\n\n if by == 'file':\n raise NotImplementedError('File-wise bus factor')\n elif by == 'projectd':\n blame = self.blame(extensions=extensions, ignore_dir=ignore_dir, by='repository')\n blame = blame.sort_values(by=['loc'], ascending=False)\n\n total = blame['loc'].sum()\n cumulative = 0\n tc = 0\n for idx in range(blame.shape[0]):\n cumulative += blame.ix[idx, 'loc']\n tc += 1\n if cumulative >= total / 2:\n break\n\n return pd.DataFrame([['projectd', tc]], columns=['projectd', 'bus factor'])\n elif by == 'repository':\n df = pd.DataFrame(columns=['repository', 'bus factor'])\n for repo in self.repos:\n try:\n df = df.append(repo.bus_factor(extensions=extensions, ignore_dir=ignore_dir, by=by))\n except GitCommandError as err:\n print('Warning! Repo: %s couldn\\'t be inspected' % (repo, ))\n pass\n df.reset_index()\n return df", "metadata": "root.ProjectDirectory.bus_factor", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 590 }, { "content": " def punchcard(self, branch='master', limit=None, extensions=None, ignore_dir=None, days=None, by=None, normalize=None):\n \"\"\"\n Returns a pandas DataFrame containing all of the data for a punchcard.\n\n * day_of_week\n * hour_of_day\n * author / committer\n * lines\n * insertions\n * deletions\n * net\n\n :param branch: the branch to return commits for\n :param limit: (optional, default=None) a maximum number of commits to return, None for no limit\n :param extensions: (optional, default=None) a list of file extensions to return commits for\n :param ignore_dir: (optional, default=None) a list of directory names to ignore\n :param days: (optional, default=None) number of days to return, if limit is None\n :param by: (optional, default=None) agg by options, None for no aggregation (just a high level punchcard), or 'committer', 'author', 'repository'\n :param normalize: (optional, default=None) if an integer, returns the data normalized to max value of that (for plotting)\n :return: DataFrame\n \"\"\"\n\n df = pd.DataFrame()\n\n if by == 'repository':\n repo_by = None\n else:\n repo_by = by\n\n for repo in self.repos:\n try:\n chunk = repo.punchcard(\n branch=branch,\n limit=limit,\n extensions=extensions,\n ignore_dir=ignore_dir,\n days=days,\n by=repo_by,\n normalize=None\n )\n chunk['repository'] = repo._repo_name()\n df = df.append(chunk)\n except GitCommandError as err:\n print('Warning! Repo: %s couldn\\'t be inspected' % (repo, ))\n pass\n\n df.reset_index()\n\n aggs = ['hour_of_day', 'day_of_week']\n if by is not None:\n aggs.append(by)\n\n punch_card = df.groupby(aggs).agg({\n 'lines': np.sum,\n 'insertions': np.sum,\n 'deletions': np.sum,\n 'net': np.sum\n })\n punch_card.reset_index(inplace=True)\n\n # normalize all cols\n if normalize is not None:\n for col in ['lines', 'insertions', 'deletions', 'net']:\n punch_card[col] = (punch_card[col] / punch_card[col].sum()) * normalize\n\n return punch_card", "metadata": "root.ProjectDirectory.punchcard", "header": "['class', 'ProjectDirectory', '(', 'object', ')', ':', '___EOS___']", "index": 629 } ]

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[ { "content": "#!/usr/bin/env python\n\"\"\"Quick and dirty render-to-PDF for badge award claim codes\"\"\"\n\nimport logging\nimport math\nimport urllib\nimport urllib2\ntry:\n from cStringIO import cStringIO as StringIO\nexcept ImportError:\n from StringIO import StringIO\n\nfrom reportlab.pdfgen import canvas\nfrom reportlab.lib import pagesizes\nfrom reportlab.lib.units import inch\nfrom reportlab.platypus import (\n SimpleDocTemplate, BaseDocTemplate, Paragraph, Preformatted, Spacer,\n PageBreak, Frame, FrameBreak, PageTemplate, Image, Table)\nfrom reportlab.platypus.doctemplate import LayoutError\nfrom reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle\nfrom reportlab.rl_config import defaultPageSize \nfrom reportlab.lib.units import inch \nfrom reportlab.lib.enums import TA_LEFT, TA_CENTER\nfrom reportlab.lib import colors\nfrom reportlab.lib import textsplit\n\nfrom reportlab.lib.utils import ImageReader\n\nfrom django.conf import settings\n\nfrom django.http import (HttpResponseRedirect, HttpResponse,\n HttpResponseForbidden, HttpResponseNotFound)\n\nfrom django.utils.html import conditional_escape\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def render_claims_to_pdf(request, slug, claim_group, deferred_awards):\n \"\"\"Currently hard-coded to print to Avery 22805 labels\"\"\"\n\n metrics = dict(\n page_width=(8.5 * inch),\n page_height=(11.0 * inch),\n\n top_margin=(0.5 * inch),\n left_margin=((25.0 / 32.0) * inch),\n\n qr_overlap=((1.0 / 32.0) * inch),\n padding=((1.0 / 16.0) * inch),\n\n horizontal_spacing=((5.0 / 16.0) * inch),\n vertical_spacing=((13.0 / 64.0) * inch),\n\n width=(1.5 * inch),\n height=(1.5 * inch),\n )\n\n debug = (request.GET.get('debug', False) is not False)\n\n pagesize = (metrics['page_width'], metrics['page_height'])\n cols = int((metrics['page_width'] - metrics['left_margin']) /\n (metrics['width'] + metrics['horizontal_spacing']))\n rows = int((metrics['page_height'] - metrics['top_margin']) /\n (metrics['height'] + metrics['vertical_spacing']))\n per_page = (cols * rows)\n label_ct = len(deferred_awards)\n page_ct = math.ceil(label_ct / per_page)\n\n pages = [deferred_awards[x:x + (per_page)]\n for x in range(0, label_ct, per_page)]\n\n response = HttpResponse(content_type='application/pdf; charset=utf-8')\n if not debug:\n # If debugging, don't force download.\n response['Content-Disposition'] = ('attachment; filename=\"%s-%s.pdf\"' %\n (slug.encode('utf-8', 'replace'), claim_group))\n\n badge_img = None\n\n fout = StringIO()\n c = canvas.Canvas(fout, pagesize=pagesize)\n\n for page in pages:\n c.translate(metrics['left_margin'],\n metrics['page_height'] - metrics['top_margin'])\n\n for row in range(0, rows, 1):\n c.translate(0.0, 0 - metrics['height'])\n c.saveState()\n\n for col in range(0, cols, 1):\n\n try:\n da = page.pop(0)\n except IndexError:\n continue\n\n if not badge_img:\n image_fin = da.badge.image.file\n image_fin.open()\n badge_img = ImageReader(StringIO(image_fin.read()))\n\n c.saveState()\n render_label(request, c, metrics, da, badge_img, debug)\n c.restoreState()\n\n dx = (metrics['width'] + metrics['horizontal_spacing'])\n c.translate(dx, 0.0)\n\n c.restoreState()\n c.translate(0.0, 0 - metrics['vertical_spacing'])\n\n c.showPage()\n\n c.save()\n response.write(fout.getvalue())\n return response", "metadata": "root.render_claims_to_pdf", "header": "['module', '___EOS___']", "index": 36 }, { "content": "def render_label(request, c, metrics, da, badge_img, debug):\n \"\"\"Render a single label\"\"\"\n badge = da.badge\n\n badge_image_width = (1.0 + (1.0 / 64.0)) * inch\n badge_image_height = (1.0 + (1.0 / 64.0)) * inch\n\n qr_left = badge_image_width - metrics['qr_overlap']\n qr_bottom = badge_image_height - metrics['qr_overlap']\n qr_width = metrics['width'] - qr_left\n qr_height = metrics['height'] - qr_bottom\n\n if False and debug:\n # Draw some layout lines on debug.\n c.setLineWidth(0.3)\n c.rect(0, 0, metrics['width'], metrics['height'])\n c.rect(qr_left, qr_bottom, qr_width, qr_height)\n c.rect(0, 0, badge_image_width, badge_image_height)\n\n fit_text(c, da.badge.title,\n 0.0, badge_image_height,\n badge_image_width, qr_height)\n\n c.saveState()\n c.rotate(-90)\n\n code_height = qr_height * (0.45)\n claim_height = qr_height - code_height\n\n c.setFont(\"Courier\", code_height)\n c.drawCentredString(0 - (badge_image_width / 2.0),\n metrics['height'] - code_height,\n da.claim_code)\n\n text = \"\"\"\n <font name=\"Helvetica\">Claim at</font> <font name=\"Courier\">%s</font>\n \"\"\" % (settings.SITE_TITLE)\n fit_text(c, text,\n 0 - badge_image_height, badge_image_width,\n badge_image_width, claim_height)\n\n c.restoreState()\n\n # Attempt to build a QR code image for the claim URL\n claim_url = request.build_absolute_uri(da.get_claim_url())\n qr_img = None\n try:\n # Try using PyQRNative: http://code.google.com/p/pyqrnative/\n # badg.us should have this in vendor-local\n from PyQRNative import QRCode, QRErrorCorrectLevel\n # TODO: Good-enough settings?\n if len(claim_url) < 20:\n qr = QRCode(3, QRErrorCorrectLevel.L)\n elif len(claim_url) < 50:\n qr = QRCode(4, QRErrorCorrectLevel.L)\n else:\n qr = QRCode(10, QRErrorCorrectLevel.L)\n qr.addData(claim_url)\n qr.make()\n qr_img = ImageReader(qr.makeImage())\n\n except ImportError:\n try:\n # Hmm, if we don't have PyQRNative, then try abusing this web\n # service. Should be fine for low volumes.\n qr_url = (\"http://api.qrserver.com/v1/create-qr-code/?%s\" %\n urllib.urlencode({'size': '%sx%s' % (500, 500),\n 'data': claim_url}))\n\n qr_img = ImageReader(StringIO(urllib2.urlopen(qr_url).read()))\n\n except Exception:\n # Ignore issues in drawing the QR code - maybe show an error?\n pass\n\n if qr_img:\n c.drawImage(qr_img, qr_left, qr_bottom, qr_width, qr_height)\n\n c.drawImage(badge_img,\n 0.0 * inch, 0.0 * inch,\n badge_image_width, badge_image_height)", "metadata": "root.render_label", "header": "['module', '___EOS___']", "index": 118 }, { "content": "def fit_text(c, text, x, y, max_w, max_h, font_name='Helvetica',\n padding_w=4.5, padding_h=4.5, font_decrement=0.0625):\n \"\"\"Draw text, reducing font size until it fits with a given max width and\n height.\"\"\"\n\n max_w -= (padding_w * 2.0)\n max_h -= (padding_h * 2.0)\n\n x += padding_w\n y += padding_h\n\n font_size = max_h\n\n while font_size > 1.0:\n ps = ParagraphStyle(name='text', alignment=TA_CENTER,\n fontName=font_name, fontSize=font_size,\n leading=font_size)\n p = Paragraph(text, ps)\n actual_w, actual_h = p.wrapOn(c, max_w, max_h)\n if actual_h > max_h or actual_w > max_w:\n font_size -= font_decrement\n else:\n y_pad = (max_h - actual_h) / 2\n p.drawOn(c, x, y + y_pad)\n return", "metadata": "root.fit_text", "header": "['module', '___EOS___']", "index": 201 } ]

[ { "span": "import logging", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 14 }, { "span": "from reportlab.lib import pagesizes", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 35 }, { "span": "from reportlab.platypus import (\n SimpleDocTemplate, BaseDocTemplate, Paragraph, Preformatted, Spacer,\n PageBreak, Frame, FrameBreak, PageTemplate, Image, Table)", "start_line": 15, "start_column": 0, "end_line": 17, "end_column": 61 }, { "span": "from reportlab.platypus.doctemplate import LayoutError", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 54 }, { "span": "from reportlab.lib.styles import getSampleStyleSheet, ParagraphStyle", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 68 }, { "span": "from reportlab.rl_config import defaultPageSize ", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 47 }, { "span": "from reportlab.lib.enums import TA_LEFT, TA_CENTER", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 50 }, { "span": "from reportlab.lib import colors", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 32 }, { "span": "from reportlab.lib import textsplit", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 35 }, { "span": "from django.http import (HttpResponseRedirect, HttpResponse,\n HttpResponseForbidden, HttpResponseNotFound)", "start_line": 30, "start_column": 0, "end_line": 31, "end_column": 52 }, { "span": "from django.utils.html import conditional_escape", "start_line": 33, "start_column": 0, "end_line": 33, "end_column": 48 } ]

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[ { "content": " def coalesce_date(date):\n return \"\" if date is None else datetime.strftime(date, '%Y-%m-%d %H:%M:%S')", "metadata": "root.csv_utils.coalesce_date", "header": "['class', 'csv_utils', ':', '___EOS___']", "index": 3 }, { "content": " def coalesce_bool(field):\n return \"\" if field is None else \"true\" if field is True else \"false\"", "metadata": "root.csv_utils.coalesce_bool", "header": "['class', 'csv_utils', ':', '___EOS___']", "index": 6 }, { "content": " def coalesce_int(num):\n return \"\" if num is None else str(num)", "metadata": "root.csv_utils.coalesce_int", "header": "['class', 'csv_utils', ':', '___EOS___']", "index": 9 } ]

[ { "span": "def coalesce_date(date):", "start_line": 3, "start_column": 4, "end_line": 3, "end_column": 28 }, { "span": "def coalesce_bool(field):", "start_line": 6, "start_column": 4, "end_line": 6, "end_column": 29 }, { "span": "def coalesce_int(num):", "start_line": 9, "start_column": 4, "end_line": 9, "end_column": 26 } ]

[]

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[ { "content": "#!/usr/bin/python\n\n\"\"\"\nThis application presents a 'console' prompt to the user asking for read commands\nwhich create ReadPropertyRequest PDUs, then lines up the coorresponding ReadPropertyACK\nand prints the value.\n\"\"\"\n\nimport sys\n\nfrom bacpypes.debugging import bacpypes_debugging, ModuleLogger\nfrom bacpypes.consolelogging import ConfigArgumentParser\nfrom bacpypes.consolecmd import ConsoleCmd\n\nfrom bacpypes.core import run\n\nfrom bacpypes.pdu import Address\nfrom bacpypes.app import LocalDeviceObject, BIPSimpleApplication\nfrom bacpypes.object import get_object_class, get_datatype\n\nfrom bacpypes.apdu import ReadPropertyMultipleRequest, PropertyReference, ReadAccessSpecification, Error, AbortPDU, ReadPropertyMultipleACK\nfrom bacpypes.primitivedata import Unsigned\nfrom bacpypes.constructeddata import Array\nfrom bacpypes.basetypes import PropertyIdentifier, ServicesSupported\n\n# some debugging\n_debug = 0\n_log = ModuleLogger(globals())\n\n# globals\nthis_device = None\nthis_application = None\nthis_console = None\n\n#\n# ReadPropertyMultipleApplication\n#\n\n\n#\n# ReadPropertyMultipleConsoleCmd\n#\n\n\n#\n# __main__\n#\n\ntry:\n # parse the command line arguments\n args = ConfigArgumentParser(description=__doc__).parse_args()\n\n if _debug: _log.debug(\"initialization\")\n if _debug: _log.debug(\" - args: %r\", args)\n\n # make a device object\n this_device = LocalDeviceObject(\n objectName=args.ini.objectname,\n objectIdentifier=int(args.ini.objectidentifier),\n maxApduLengthAccepted=int(args.ini.maxapdulengthaccepted),\n segmentationSupported=args.ini.segmentationsupported,\n vendorIdentifier=int(args.ini.vendoridentifier),\n )\n\n # make a simple application\n this_application = ReadPropertyMultipleApplication(this_device, args.ini.address)\n\n # get the services supported\n services_supported = this_application.get_services_supported()\n if _debug: _log.debug(\" - services_supported: %r\", services_supported)\n\n # let the device object know\n this_device.protocolServicesSupported = services_supported.value\n\n # make a console\n this_console = ReadPropertyMultipleConsoleCmd()\n\n _log.debug(\"running\")\n\n run()\n\nexcept Exception, e:\n _log.exception(\"an error has occurred: %s\", e)\nfinally:\n _log.debug(\"finally\")\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@bacpypes_debugging\nclass ReadPropertyMultipleApplication(BIPSimpleApplication):\n\n\n", "metadata": "root.ReadPropertyMultipleApplication", "header": "['module', '___EOS___']", "index": 38 }, { "content": " def __init__(self, *args):\n if _debug: ReadPropertyMultipleApplication._debug(\"__init__ %r\", args)\n BIPSimpleApplication.__init__(self, *args)\n\n # keep track of requests to line up responses\n self._request = None", "metadata": "root.ReadPropertyMultipleApplication.__init__", "header": "['class', 'ReadPropertyMultipleApplication', '(', 'BIPSimpleApplication', ')', ':', '___EOS___']", "index": 41 }, { "content": " def request(self, apdu):\n if _debug: ReadPropertyMultipleApplication._debug(\"request %r\", apdu)\n\n # save a copy of the request\n self._request = apdu\n\n # forward it along\n BIPSimpleApplication.request(self, apdu)", "metadata": "root.ReadPropertyMultipleApplication.request", "header": "['class', 'ReadPropertyMultipleApplication', '(', 'BIPSimpleApplication', ')', ':', '___EOS___']", "index": 48 }, { "content": " def confirmation(self, apdu):\n if _debug: ReadPropertyMultipleApplication._debug(\"confirmation %r\", apdu)\n\n if isinstance(apdu, Error):\n sys.stdout.write(\"error: %s\\n\" % (apdu.errorCode,))\n sys.stdout.flush()\n\n elif isinstance(apdu, AbortPDU):\n apdu.debug_contents()\n\n elif (isinstance(self._request, ReadPropertyMultipleRequest)) and (isinstance(apdu, ReadPropertyMultipleACK)):\n # loop through the results\n for result in apdu.listOfReadAccessResults:\n # here is the object identifier\n objectIdentifier = result.objectIdentifier\n if _debug: ReadPropertyMultipleApplication._debug(\" - objectIdentifier: %r\", objectIdentifier)\n\n # now come the property values per object\n for element in result.listOfResults:\n # get the property and array index\n propertyIdentifier = element.propertyIdentifier\n if _debug: ReadPropertyMultipleApplication._debug(\" - propertyIdentifier: %r\", propertyIdentifier)\n propertyArrayIndex = element.propertyArrayIndex\n if _debug: ReadPropertyMultipleApplication._debug(\" - propertyArrayIndex: %r\", propertyArrayIndex)\n\n # here is the read result\n readResult = element.readResult\n\n sys.stdout.write(propertyIdentifier)\n if propertyArrayIndex is not None:\n sys.stdout.write(\"[\" + str(propertyArrayIndex) + \"]\")\n\n # check for an error\n if readResult.propertyAccessError is not None:\n sys.stdout.write(\" ! \" + str(readResult.propertyAccessError) + '\\n')\n\n else:\n # here is the value\n propertyValue = readResult.propertyValue\n\n # find the datatype\n datatype = get_datatype(objectIdentifier[0], propertyIdentifier)\n if _debug: ReadPropertyMultipleApplication._debug(\" - datatype: %r\", datatype)\n if not datatype:\n raise TypeError, \"unknown datatype\"\n\n # special case for array parts, others are managed by cast_out\n if issubclass(datatype, Array) and (propertyArrayIndex is not None):\n if propertyArrayIndex == 0:\n value = propertyValue.cast_out(Unsigned)\n else:\n value = propertyValue.cast_out(datatype.subtype)\n else:\n value = propertyValue.cast_out(datatype)\n if _debug: ReadPropertyMultipleApplication._debug(\" - value: %r\", value)\n\n sys.stdout.write(\" = \" + str(value) + '\\n')\n sys.stdout.flush()", "metadata": "root.ReadPropertyMultipleApplication.confirmation", "header": "['class', 'ReadPropertyMultipleApplication', '(', 'BIPSimpleApplication', ')', ':', '___EOS___']", "index": 57 }, { "content": "@bacpypes_debugging\nclass ReadPropertyMultipleConsoleCmd(ConsoleCmd):\n", "metadata": "root.ReadPropertyMultipleConsoleCmd", "header": "['module', '___EOS___']", "index": 120 }, { "content": " def do_read(self, args):\n \"\"\"read <addr> ( <type> <inst> ( <prop> [ <indx> ] )... )...\"\"\"\n args = args.split()\n if _debug: ReadPropertyMultipleConsoleCmd._debug(\"do_read %r\", args)\n\n try:\n i = 0\n addr = args[i]\n i += 1\n\n read_access_spec_list = []\n while i < len(args):\n obj_type = args[i]\n i += 1\n\n if obj_type.isdigit():\n obj_type = int(obj_type)\n elif not get_object_class(obj_type):\n raise ValueError, \"unknown object type\"\n \n obj_inst = int(args[i])\n i += 1\n\n prop_reference_list = []\n while i < len(args):\n prop_id = args[i]\n if prop_id not in PropertyIdentifier.enumerations:\n break\n\n i += 1\n if prop_id in ('all', 'required', 'optional'):\n pass\n else:\n datatype = get_datatype(obj_type, prop_id)\n if not datatype:\n raise ValueError, \"invalid property for object type\"\n\n # build a property reference\n prop_reference = PropertyReference(\n propertyIdentifier=prop_id,\n )\n\n # check for an array index\n if (i < len(args)) and args[i].isdigit():\n prop_reference.propertyArrayIndex = int(args[i])\n i += 1\n\n # add it to the list\n prop_reference_list.append(prop_reference)\n\n # check for at least one property\n if not prop_reference_list:\n raise ValueError, \"provide at least one property\"\n\n # build a read access specification\n read_access_spec = ReadAccessSpecification(\n objectIdentifier=(obj_type, obj_inst),\n listOfPropertyReferences=prop_reference_list,\n )\n\n # add it to the list\n read_access_spec_list.append(read_access_spec)\n\n # check for at least one\n if not read_access_spec_list:\n raise RuntimeError, \"at least one read access specification required\"\n\n # build the request\n request = ReadPropertyMultipleRequest(\n listOfReadAccessSpecs=read_access_spec_list,\n )\n request.pduDestination = Address(addr)\n if _debug: ReadPropertyMultipleConsoleCmd._debug(\" - request: %r\", request)\n\n # give it to the application\n this_application.request(request)\n\n except Exception, e:\n ReadPropertyMultipleConsoleCmd._exception(\"exception: %r\", e)", "metadata": "root.ReadPropertyMultipleConsoleCmd.do_read", "header": "['class', 'ReadPropertyMultipleConsoleCmd', '(', 'ConsoleCmd', ')', ':', '___EOS___']", "index": 123 } ]

[ { "span": "from bacpypes.basetypes import PropertyIdentifier, ServicesSupported", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 68 } ]

[]

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[ { "content": "def _cdb_common(target_pid=None, target_cmd=None, symbols=None, env=None, callback=None,\n callback_args=None, timeout=_common.DEFAULT_TIMEOUT, memory_limit=None,\n idle_limit=None):\n assert target_pid is not None or target_cmd is not None\n assert target_pid is None or target_cmd is None\n classification = None\n if env is None:\n env = dict(os.environ)\n env[\"LIBC_FATAL_STDERR_\"] = \"1\"\n if symbols is not None:\n env[\"_NT_ALT_SYMBOL_PATH\"] = symbols\n elif target_cmd:\n env[\"_NT_ALT_SYMBOL_PATH\"] = os.path.abspath(os.path.dirname(target_cmd[0]))\n cdb_cmd = [TOOL_CDB, \"-x\", \"-lines\", \"-y\",\n \"SRV*c:\\\\websymbols*http://msdl.microsoft.com/download/symbols\",\n \"-c\", \"!gflag;g;.lastevent;r;kb;!msec.exploitable -m;\" \\\n \"!heap -s 0;!heap -h;.echo;q\"] # keep -c last\n start_time = _common.prof_timer()\n with tempfile.TemporaryFile(mode=\"w+t\") as f:\n if target_pid is not None:\n cdb_cmd[-1] += \"d\" # change final 'q' to 'qd'\n cdb_cmd += [\"-p\", \"%d\" % target_pid]\n p = subprocess.Popen(cdb_cmd, stderr=f, stdout=f, env=env,\n stdin=subprocess.PIPE, creationflags=_common.POPEN_FLAGS)\n else:\n p = subprocess.Popen(cdb_cmd + target_cmd, stderr=f, stdout=f, env=env,\n stdin=subprocess.PIPE, creationflags=_common.POPEN_FLAGS)\n ps = psutil.Process(p.pid)\n bn = os.path.basename(target_cmd[0])\n try:\n while (_common.prof_timer() - start_time) < timeout:\n if p.poll() is not None:\n raise psutil.NoSuchProcess(p.pid)\n for kid in ps.get_children():\n if kid.name != bn:\n continue # guard against catching something other than\n # the target being launched by the debugger\n assert target_pid is None, \"debugger has multiple children\"\n target_pid = kid.pid\n if target_pid is not None:\n #log.debug(\"got child pid in %0.2fs\", (_common.prof_timer() - start_time))\n break\n time.sleep(POLL_SLEEP)\n assert target_pid is not None, \"Failed to get child pid\"\n except psutil.NoSuchProcess:\n # this means CDB is already gone. so we can't possibly hit a timeout and we\n # won't use target_pid for anything anyways\n log.debug(\"target done before pid was found\")\n target_pid = p.pid\n try:\n cb_res = _common._call_callback(callback, callback_args, target_pid)\n if cb_res == _common.CB_ERROR:\n raise RuntimeError(\"callback() returned error\")\n if p.poll() is None and target_cmd is None:\n try:\n p.send_signal(signal.CTRL_BREAK_EVENT)\n except WindowsError as e:\n f.write(\"alf.debug.cdb: failed to send Ctrl+Break to debugger (%s)\\n\" % e)\n log.warn(\"failed to send Ctrl+Break to debugger\")\n target_mon = _common.TargetMonitor(target_pid, idle_limit=idle_limit,\n memory_limit=memory_limit, time_limit=timeout)\n while p.poll() is None:\n if target_mon.check_memory():\n f.write(\"memory limit of %0.2f MB was exceeded\\n\" % (memory_limit/1048576))\n classification = _common.EXCESS_MEMORY_USAGE\n break\n if target_mon.check_idle():\n break\n if target_mon.check_timeout():\n classification = _common.TIMEOUT\n break\n time.sleep(POLL_SLEEP)\n finally:\n if p.poll() is None:\n attempt = 0\n pid = target_pid\n while True:\n if attempt == 1:\n try:\n p.send_signal(signal.CTRL_BREAK_EVENT)\n except WindowsError as e:\n f.write(\"alf.debug.cdb: failed to send Ctrl+Break to debugger (%s)\\n\"\n % e)\n log.warn(\"failed to send Ctrl+Break to debugger\")\n else:\n with open(os.devnull, \"w\") as fp:\n subprocess.call([\"taskkill\", \"/pid\", str(pid), \"/f\", \"/t\"],\n stdout=fp, stderr=fp)\n st = _common.prof_timer()\n while p.poll() is None and \\\n (_common.prof_timer() - st) < TIMEOUT_CHILD_EXIT_WAIT:\n time.sleep(POLL_SLEEP)\n if p.poll() is not None:\n break\n if attempt == 0:\n f.write(\"[%0.1f]alf.debug.cdb: failed to kill child pid %d, trying to \"\n \"break into debugger instead\\n\" % (time.time(), pid))\n elif attempt == 1:\n f.write(\"[%0.1f]alf.debug.cdb: failed to break into debugger, trying to \"\n \"kill parent pid %d instead\\n\" % (time.time(), pid))\n pid = p.pid\n attempt += 1\n assert attempt <= 3, \"Failed to kill the debugger twice !?!\"\n assert attempt <= 1, \"Shouldn't need to kill the debugger.\"\n exit_code = p.wait()\n f.seek(0, os.SEEK_SET)\n debug_log = f.read()\n backtrace = []\n m = re.search(r\"^The call to LoadLibrary\\((?P<lib>[a-z]+)\\) failed, Win32 error 0n2\",\n debug_log, re.MULTILINE)\n if m is not None:\n raise RuntimeError(\"cdb failed on call to LoadLibrary(%s)\" % m.group(\"lib\"))\n debug_class = _common.NOT_AN_EXCEPTION\n if (\"Last event: %x.\" % target_pid) in debug_log:\n backtrace, debug_class, exit_code = _common.process_exploitable_output(debug_log)\n if cb_res == _common.CB_HANG:\n classification = _common.TIMEOUT\n elif classification is None:\n if cb_res == _common.CB_FAIL:\n classification = _common.UNKNOWN\n else:\n classification = debug_class\n debug_log = _common._limit_output_length(debug_log)\n return _common.FuzzResult(classification, debug_log, backtrace, exit_code=exit_code)", "metadata": "root._cdb_common", "header": "['module', '___EOS___']", "index": 123 } ]

[ { "span": "\"!gflag;g;.lastevent;r;kb;!msec.exploitable -m;\" \\\n \"!heap -s 0;!heap -h;.echo;q\"]", "start_line": 138, "start_column": 21, "end_line": 139, "end_column": 44 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "def _handleattrhelper(Class, transport, methodName):\n \"\"\"\n (private) Helper for L{Certificate.peerFromTransport} and\n L{Certificate.hostFromTransport} which checks for incompatible handle types\n and null certificates and raises the appropriate exception or returns the\n appropriate certificate object.\n \"\"\"\n method = getattr(transport.getHandle(),\n \"get_%s_certificate\" % (methodName,), None)\n if method is None:\n raise CertificateError(\n \"non-TLS transport %r did not have %s certificate\" % (transport, methodName))\n cert = method()\n if cert is None:\n raise CertificateError(\n \"TLS transport %r did not have %s certificate\" % (transport, methodName))\n return Class(cert)", "metadata": "root._handleattrhelper", "header": "['module', '___EOS___']", "index": 139 }, { "content": "class Certificate(CertBase):\n \"\"\"\n An x509 certificate.\n \"\"\"\n\n\n\n\n\n load = classmethod(load)\n _load = load\n\n\n\n\n loadPEM = classmethod(loadPEM)\n\n\n peerFromTransport = classmethod(peerFromTransport)\n\n\n hostFromTransport = classmethod(hostFromTransport)\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.Certificate", "header": "['module', '___EOS___']", "index": 158 }, { "content": " def __repr__(self):\n return '<%s Subject=%s Issuer=%s>' % (self.__class__.__name__,\n self.getSubject().commonName,\n self.getIssuer().commonName)", "metadata": "root.Certificate.__repr__", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 162 }, { "content": " def __eq__(self, other):\n if isinstance(other, Certificate):\n return self.dump() == other.dump()\n return False", "metadata": "root.Certificate.__eq__", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 167 }, { "content": " def __ne__(self, other):\n return not self.__eq__(other)", "metadata": "root.Certificate.__ne__", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 173 }, { "content": " def load(Class, requestData, format=crypto.FILETYPE_ASN1, args=()):\n \"\"\"\n Load a certificate from an ASN.1- or PEM-format string.\n\n @rtype: C{Class}\n \"\"\"\n return Class(crypto.load_certificate(format, requestData), *args)", "metadata": "root.Certificate.load", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 177 }, { "content": " def dumpPEM(self):\n \"\"\"\n Dump this certificate to a PEM-format data string.\n\n @rtype: C{str}\n \"\"\"\n return self.dump(crypto.FILETYPE_PEM)", "metadata": "root.Certificate.dumpPEM", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 188 }, { "content": " def loadPEM(Class, data):\n \"\"\"\n Load a certificate from a PEM-format data string.\n\n @rtype: C{Class}\n \"\"\"\n return Class.load(data, crypto.FILETYPE_PEM)", "metadata": "root.Certificate.loadPEM", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 197 }, { "content": " def peerFromTransport(Class, transport):\n \"\"\"\n Get the certificate for the remote end of the given transport.\n\n @type: L{ISystemHandle}\n @rtype: C{Class}\n\n @raise: L{CertificateError}, if the given transport does not have a peer\n certificate.\n \"\"\"\n return _handleattrhelper(Class, transport, 'peer')", "metadata": "root.Certificate.peerFromTransport", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 207 }, { "content": " def hostFromTransport(Class, transport):\n \"\"\"\n Get the certificate for the local end of the given transport.\n\n @param transport: an L{ISystemHandle} provider; the transport we will\n\n @rtype: C{Class}\n\n @raise: L{CertificateError}, if the given transport does not have a host\n certificate.\n \"\"\"\n return _handleattrhelper(Class, transport, 'host')", "metadata": "root.Certificate.hostFromTransport", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 221 }, { "content": " def getPublicKey(self):\n \"\"\"\n Get the public key for this certificate.\n\n @rtype: L{PublicKey}\n \"\"\"\n return PublicKey(self.original.get_pubkey())", "metadata": "root.Certificate.getPublicKey", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 236 }, { "content": " def dump(self, format=crypto.FILETYPE_ASN1):\n return crypto.dump_certificate(format, self.original)", "metadata": "root.Certificate.dump", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 245 }, { "content": " def serialNumber(self):\n \"\"\"\n Retrieve the serial number of this certificate.\n\n @rtype: C{int}\n \"\"\"\n return self.original.get_serial_number()", "metadata": "root.Certificate.serialNumber", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 249 }, { "content": " def digest(self, method='md5'):\n \"\"\"\n Return a digest hash of this certificate using the specified hash\n algorithm.\n\n @param method: One of C{'md5'} or C{'sha'}.\n @rtype: C{str}\n \"\"\"\n return self.original.digest(method)", "metadata": "root.Certificate.digest", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 258 }, { "content": " def _inspect(self):\n return '\\n'.join(['Certificate For Subject:',\n self.getSubject().inspect(),\n '\\nIssuer:',\n self.getIssuer().inspect(),\n '\\nSerial Number: %d' % self.serialNumber(),\n 'Digest: %s' % self.digest()])", "metadata": "root.Certificate._inspect", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 269 }, { "content": " def inspect(self):\n \"\"\"\n Return a multi-line, human-readable representation of this\n Certificate, including information about the subject, issuer, and\n public key.\n \"\"\"\n return '\\n'.join((self._inspect(), self.getPublicKey().inspect()))", "metadata": "root.Certificate.inspect", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 278 }, { "content": " def getIssuer(self):\n \"\"\"\n Retrieve the issuer of this certificate.\n\n @rtype: L{DistinguishedName}\n @return: A copy of the issuer of this certificate.\n \"\"\"\n return self._copyName('issuer')", "metadata": "root.Certificate.getIssuer", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 287 }, { "content": " def options(self, *authorities):\n raise NotImplementedError('Possible, but doubtful we need this yet')", "metadata": "root.Certificate.options", "header": "['class', 'Certificate', '(', 'CertBase', ')', ':', '___EOS___']", "index": 297 }, { "content": "class CertificateRequest(CertBase):\n \"\"\"\n An x509 certificate request.\n\n Certificate requests are given to certificate authorities to be signed and\n returned resulting in an actual certificate.\n \"\"\"\n load = classmethod(load)\n\n", "metadata": "root.CertificateRequest", "header": "['module', '___EOS___']", "index": 302 }, { "content": " def load(Class, requestData, requestFormat=crypto.FILETYPE_ASN1):\n req = crypto.load_certificate_request(requestFormat, requestData)\n dn = DistinguishedName()\n dn._copyFrom(req.get_subject())\n if not req.verify(req.get_pubkey()):\n raise VerifyError(\"Can't verify that request for %r is self-signed.\" % (dn,))\n return Class(req)", "metadata": "root.CertificateRequest.load", "header": "['class', 'CertificateRequest', '(', 'CertBase', ')', ':', '___EOS___']", "index": 309 }, { "content": " def dump(self, format=crypto.FILETYPE_ASN1):\n return crypto.dump_certificate_request(format, self.original)", "metadata": "root.CertificateRequest.dump", "header": "['class', 'CertificateRequest', '(', 'CertBase', ')', ':', '___EOS___']", "index": 319 }, { "content": "class PrivateCertificate(Certificate):\n \"\"\"\n An x509 certificate and private key.\n \"\"\"\n\n\n\n\n\n\n load = classmethod(load)\n\n\n\n\n\n\n loadPEM = classmethod(loadPEM)\n\n\n fromCertificateAndKeyPair = classmethod(fromCertificateAndKeyPair)\n\n\n\n\n\n\n\n", "metadata": "root.PrivateCertificate", "header": "['module', '___EOS___']", "index": 324 }, { "content": " def __repr__(self):\n return Certificate.__repr__(self) + ' with ' + repr(self.privateKey)", "metadata": "root.PrivateCertificate.__repr__", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 328 }, { "content": " def _setPrivateKey(self, privateKey):\n if not privateKey.matches(self.getPublicKey()):\n raise VerifyError(\n \"Certificate public and private keys do not match.\")\n self.privateKey = privateKey\n return self", "metadata": "root.PrivateCertificate._setPrivateKey", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 332 }, { "content": " def newCertificate(self, newCertData, format=crypto.FILETYPE_ASN1):\n \"\"\"\n Create a new L{PrivateCertificate} from the given certificate data and\n this instance's private key.\n \"\"\"\n return self.load(newCertData, self.privateKey, format)", "metadata": "root.PrivateCertificate.newCertificate", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 340 }, { "content": " def load(Class, data, privateKey, format=crypto.FILETYPE_ASN1):\n return Class._load(data, format)._setPrivateKey(privateKey)", "metadata": "root.PrivateCertificate.load", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 348 }, { "content": " def inspect(self):\n return '\\n'.join([Certificate._inspect(self),\n self.privateKey.inspect()])", "metadata": "root.PrivateCertificate.inspect", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 353 }, { "content": " def dumpPEM(self):\n \"\"\"\n Dump both public and private parts of a private certificate to\n PEM-format data.\n \"\"\"\n return self.dump(crypto.FILETYPE_PEM) + self.privateKey.dump(crypto.FILETYPE_PEM)", "metadata": "root.PrivateCertificate.dumpPEM", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 358 }, { "content": " def loadPEM(Class, data):\n \"\"\"\n Load both private and public parts of a private certificate from a\n chunk of PEM-format data.\n \"\"\"\n return Class.load(data, KeyPair.load(data, crypto.FILETYPE_PEM),\n crypto.FILETYPE_PEM)", "metadata": "root.PrivateCertificate.loadPEM", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 366 }, { "content": " def fromCertificateAndKeyPair(Class, certificateInstance, privateKey):\n privcert = Class(certificateInstance.original)\n return privcert._setPrivateKey(privateKey)", "metadata": "root.PrivateCertificate.fromCertificateAndKeyPair", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 376 }, { "content": " def options(self, *authorities):\n options = dict(privateKey=self.privateKey.original,\n certificate=self.original)\n if authorities:\n options.update(dict(verify=True,\n requireCertificate=True,\n caCerts=[auth.original for auth in authorities]))\n return OpenSSLCertificateOptions(**options)", "metadata": "root.PrivateCertificate.options", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 382 }, { "content": " def certificateRequest(self, format=crypto.FILETYPE_ASN1,\n digestAlgorithm='md5'):\n return self.privateKey.certificateRequest(\n self.getSubject(),\n format,\n digestAlgorithm)", "metadata": "root.PrivateCertificate.certificateRequest", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 392 }, { "content": " def signCertificateRequest(self,\n requestData,\n verifyDNCallback,\n serialNumber,\n requestFormat=crypto.FILETYPE_ASN1,\n certificateFormat=crypto.FILETYPE_ASN1):\n issuer = self.getSubject()\n return self.privateKey.signCertificateRequest(\n issuer,\n requestData,\n verifyDNCallback,\n serialNumber,\n requestFormat,\n certificateFormat)", "metadata": "root.PrivateCertificate.signCertificateRequest", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 400 }, { "content": " def signRequestObject(self, certificateRequest, serialNumber,\n secondsToExpiry=60 * 60 * 24 * 365, # One year\n digestAlgorithm='md5'):\n return self.privateKey.signRequestObject(self.getSubject(),\n certificateRequest,\n serialNumber,\n secondsToExpiry,\n digestAlgorithm)", "metadata": "root.PrivateCertificate.signRequestObject", "header": "['class', 'PrivateCertificate', '(', 'Certificate', ')', ':', '___EOS___']", "index": 416 }, { "content": "class KeyPair(PublicKey):\n\n load = classmethod(load)\n\n\n\n\n\n\n\n\n\n\n\n\n generate = classmethod(generate)\n\n\n\n\n\n\n\n\n\n", "metadata": "root.KeyPair", "header": "['module', '___EOS___']", "index": 465 }, { "content": " def load(Class, data, format=crypto.FILETYPE_ASN1):\n return Class(crypto.load_privatekey(format, data))", "metadata": "root.KeyPair.load", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 467 }, { "content": " def dump(self, format=crypto.FILETYPE_ASN1):\n return crypto.dump_privatekey(format, self.original)", "metadata": "root.KeyPair.dump", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 472 }, { "content": " def __getstate__(self):\n return self.dump()", "metadata": "root.KeyPair.__getstate__", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 476 }, { "content": " def __setstate__(self, state):\n self.__init__(crypto.load_privatekey(crypto.FILETYPE_ASN1, state))", "metadata": "root.KeyPair.__setstate__", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 480 }, { "content": " def inspect(self):\n t = self.original.type()\n if t == crypto.TYPE_RSA:\n ts = 'RSA'\n elif t == crypto.TYPE_DSA:\n ts = 'DSA'\n else:\n ts = '(Unknown Type!)'\n L = (self.original.bits(), ts, self.keyHash())\n return '%s-bit %s Key Pair with Hash: %s' % L", "metadata": "root.KeyPair.inspect", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 484 }, { "content": " def generate(Class, kind=crypto.TYPE_RSA, size=1024):\n pkey = crypto.PKey()\n pkey.generate_key(kind, size)\n return Class(pkey)", "metadata": "root.KeyPair.generate", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 496 }, { "content": " def newCertificate(self, newCertData, format=crypto.FILETYPE_ASN1):\n return PrivateCertificate.load(newCertData, self, format)", "metadata": "root.KeyPair.newCertificate", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 502 }, { "content": " def requestObject(self, distinguishedName, digestAlgorithm='md5'):\n req = crypto.X509Req()\n req.set_pubkey(self.original)\n distinguishedName._copyInto(req.get_subject())\n req.sign(self.original, digestAlgorithm)\n return CertificateRequest(req)", "metadata": "root.KeyPair.requestObject", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 507 }, { "content": " def certificateRequest(self, distinguishedName,\n format=crypto.FILETYPE_ASN1,\n digestAlgorithm='md5'):\n \"\"\"Create a certificate request signed with this key.\n\n @return: a string, formatted according to the 'format' argument.\n \"\"\"\n return self.requestObject(distinguishedName, digestAlgorithm).dump(format)", "metadata": "root.KeyPair.certificateRequest", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 515 }, { "content": " def signCertificateRequest(self,\n issuerDistinguishedName,\n requestData,\n verifyDNCallback,\n serialNumber,\n requestFormat=crypto.FILETYPE_ASN1,\n certificateFormat=crypto.FILETYPE_ASN1,\n secondsToExpiry=60 * 60 * 24 * 365, # One year\n digestAlgorithm='md5'):\n \"\"\"\n Given a blob of certificate request data and a certificate authority's\n DistinguishedName, return a blob of signed certificate data.\n\n If verifyDNCallback returns a Deferred, I will return a Deferred which\n fires the data when that Deferred has completed.\n \"\"\"\n hlreq = CertificateRequest.load(requestData, requestFormat)\n\n dn = hlreq.getSubject()\n vval = verifyDNCallback(dn)\n\n def verified(value):\n if not value:\n raise VerifyError(\"DN callback %r rejected request DN %r\" % (verifyDNCallback, dn))\n return self.signRequestObject(issuerDistinguishedName, hlreq,\n serialNumber, secondsToExpiry, digestAlgorithm).dump(certificateFormat)\n\n if isinstance(vval, Deferred):\n return vval.addCallback(verified)\n else:\n return verified(vval)", "metadata": "root.KeyPair.signCertificateRequest", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 525 }, { "content": " def signRequestObject(self,\n issuerDistinguishedName,\n requestObject,\n serialNumber,\n secondsToExpiry=60 * 60 * 24 * 365, # One year\n digestAlgorithm='md5'):\n \"\"\"\n Sign a CertificateRequest instance, returning a Certificate instance.\n \"\"\"\n req = requestObject.original\n dn = requestObject.getSubject()\n cert = crypto.X509()\n issuerDistinguishedName._copyInto(cert.get_issuer())\n cert.set_subject(req.get_subject())\n cert.set_pubkey(req.get_pubkey())\n cert.gmtime_adj_notBefore(0)\n cert.gmtime_adj_notAfter(secondsToExpiry)\n cert.set_serial_number(serialNumber)\n cert.sign(self.original, digestAlgorithm)\n return Certificate(cert)", "metadata": "root.KeyPair.signRequestObject", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 558 }, { "content": " def selfSignedCert(self, serialNumber, **kw):\n dn = DN(**kw)\n return PrivateCertificate.fromCertificateAndKeyPair(\n self.signRequestObject(dn, self.requestObject(dn), serialNumber),\n self)", "metadata": "root.KeyPair.selfSignedCert", "header": "['class', 'KeyPair', '(', 'PublicKey', ')', ':', '___EOS___']", "index": 580 } ]

[ { "span": "Class(cert)", "start_line": 155, "start_column": 11, "end_line": 155, "end_column": 22 }, { "span": "Class(crypto.load_certificate(format, requestData), *args)", "start_line": 183, "start_column": 15, "end_line": 183, "end_column": 73 }, { "span": "Class(req)", "start_line": 315, "start_column": 15, "end_line": 315, "end_column": 25 }, { "span": "Class(certificateInstance.original)", "start_line": 377, "start_column": 19, "end_line": 377, "end_column": 54 }, { "span": "Class(crypto.load_privatekey(format, data))", "start_line": 468, "start_column": 15, "end_line": 468, "end_column": 58 }, { "span": "Class(pkey)", "start_line": 499, "start_column": 15, "end_line": 499, "end_column": 26 } ]

[ { "span": "class Certificate(CertBase):", "start_line": 158, "start_column": 0, "end_line": 158, "end_column": 28 }, { "span": "Class,", "start_line": 177, "start_column": 13, "end_line": 177, "end_column": 18 }, { "span": "Class,", "start_line": 207, "start_column": 26, "end_line": 207, "end_column": 31 }, { "span": "Class,", "start_line": 221, "start_column": 26, "end_line": 221, "end_column": 31 }, { "span": "class CertificateRequest(CertBase):", "start_line": 302, "start_column": 0, "end_line": 302, "end_column": 35 }, { "span": "Class,", "start_line": 309, "start_column": 13, "end_line": 309, "end_column": 18 }, { "span": "class PrivateCertificate(Certificate):", "start_line": 324, "start_column": 0, "end_line": 324, "end_column": 38 }, { "span": "Class,", "start_line": 376, "start_column": 34, "end_line": 376, "end_column": 39 }, { "span": "class KeyPair(PublicKey):", "start_line": 465, "start_column": 0, "end_line": 465, "end_column": 25 }, { "span": "Class,", "start_line": 467, "start_column": 13, "end_line": 467, "end_column": 18 }, { "span": "Class,", "start_line": 496, "start_column": 17, "end_line": 496, "end_column": 22 } ]

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[ { "content": "#!/usr/bin/env python\n# vim: ai ts=4 sts=4 et sw=4\nimport json_field\nimport logging\nimport uuid\nimport uuidfield\nfrom dimagi.ext.couchdbkit import *\n\nfrom datetime import datetime, timedelta\nfrom django.db import models, transaction\nfrom collections import namedtuple\nfrom corehq.apps.app_manager.dbaccessors import get_app\nfrom corehq.apps.app_manager.models import Form\nfrom corehq.util.mixin import UUIDGeneratorMixin\nfrom corehq.apps.users.models import CouchUser\nfrom casexml.apps.case.models import CommCareCase\nfrom dimagi.utils.couch.migration import SyncSQLToCouchMixin\nfrom dimagi.utils.mixins import UnicodeMixIn\nfrom dimagi.utils.parsing import json_format_datetime\nfrom corehq.apps.sms.mixin import (CommCareMobileContactMixin,\n PhoneNumberInUseException, InvalidFormatException, VerifiedNumber,\n apply_leniency, BadSMSConfigException)\nfrom corehq.apps.sms import util as smsutil\nfrom corehq.apps.sms.messages import (MSG_MOBILE_WORKER_INVITATION_START,\n MSG_MOBILE_WORKER_ANDROID_INVITATION, MSG_MOBILE_WORKER_JAVA_INVITATION,\n get_message)\nfrom corehq.util.quickcache import quickcache\nfrom corehq.util.view_utils import absolute_reverse\nfrom dimagi.utils.couch.undo import DELETED_SUFFIX\nfrom dimagi.utils.couch import CouchDocLockableMixIn\nfrom dimagi.utils.load_balance import load_balance\nfrom dimagi.utils.logging import notify_exception\nfrom django.utils.translation import ugettext_noop, ugettext_lazy\n\n\nINCOMING = \"I\"\nOUTGOING = \"O\"\n\nCALLBACK_PENDING = \"PENDING\"\nCALLBACK_RECEIVED = \"RECEIVED\"\nCALLBACK_MISSED = \"MISSED\"\n\nFORWARD_ALL = \"ALL\"\nFORWARD_BY_KEYWORD = \"KEYWORD\"\nFORWARDING_CHOICES = [FORWARD_ALL, FORWARD_BY_KEYWORD]\n\nWORKFLOW_CALLBACK = \"CALLBACK\"\nWORKFLOW_REMINDER = \"REMINDER\"\nWORKFLOW_KEYWORD = \"KEYWORD\"\nWORKFLOW_FORWARD = \"FORWARD\"\nWORKFLOW_BROADCAST = \"BROADCAST\"\nWORKFLOW_PERFORMANCE = \"PERFORMANCE\"\nWORKFLOW_DEFAULT = 'default'\n\nDIRECTION_CHOICES = (\n (INCOMING, \"Incoming\"),\n (OUTGOING, \"Outgoing\"))\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nfrom corehq.apps.sms import signals\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class MessageLog(SafeSaveDocument, UnicodeMixIn):\n base_doc = \"MessageLog\"\n couch_recipient_doc_type = StringProperty() # \"CommCareCase\", \"CommCareUser\", \"WebUser\"\n couch_recipient = StringProperty() # _id of the contact who this sms was sent to/from\n phone_number = StringProperty()\n direction = StringProperty()\n date = DateTimeProperty()\n domain = StringProperty()\n backend_api = StringProperty() # This must be set to <backend module>.API_ID in order to process billing correctly\n backend_id = StringProperty()\n billed = BooleanProperty(default=False)\n billing_errors = ListProperty()\n chat_user_id = StringProperty() # For outgoing sms only: if this sms was sent from a chat window, the _id of the CouchUser who sent this sms; otherwise None\n workflow = StringProperty() # One of the WORKFLOW_* constants above describing what kind of workflow this sms was a part of\n # Points to the couch_id of an instance of SQLXFormsSession\n # that this message is tied to\n xforms_session_couch_id = StringProperty()\n reminder_id = StringProperty() # Points to the _id of an instance of corehq.apps.reminders.models.CaseReminder that this sms is tied to\n processed = BooleanProperty(default=True)\n datetime_to_process = DateTimeProperty()\n num_processing_attempts = IntegerProperty(default=0)\n error = BooleanProperty(default=False)\n system_error_message = StringProperty()\n # If the message was simulated from a domain, this is the domain\n domain_scope = StringProperty()\n queued_timestamp = DateTimeProperty()\n processed_timestamp = DateTimeProperty()\n # If this outgoing message is a reply to an inbound message, then this is\n # the _id of the inbound message\n # TODO: For now this is a placeholder and needs to be implemented\n in_reply_to = StringProperty()\n system_phone_number = StringProperty()\n # Set to True to send the message regardless of whether the destination\n # phone number has opted-out. Should only be used to send opt-out\n # replies or other info-related queries while opted-out.\n ignore_opt_out = BooleanProperty(default=False)\n location_id = StringProperty()\n\n\n\n\n \n \n\n\n\n\n \n", "metadata": "root.MessageLog", "header": "['module', '___EOS___']", "index": 59 }, { "content": " def __unicode__(self):\n to_from = (self.direction == INCOMING) and \"from\" or \"to\"\n return \"Message %s %s\" % (to_from, self.phone_number)", "metadata": "root.MessageLog.__unicode__", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 98 }, { "content": " def set_system_error(self, message=None):\n self.error = True\n self.system_error_message = message\n self.save()", "metadata": "root.MessageLog.set_system_error", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 102 }, { "content": " @property\n def username(self):\n name = self.phone_number\n if self.couch_recipient:\n try:\n if self.couch_recipient_doc_type == \"CommCareCase\":\n name = CommCareCase.get(self.couch_recipient).name\n else:\n # Must be a user\n name = CouchUser.get_by_user_id(self.couch_recipient).username\n except Exception as e:\n pass\n return name", "metadata": "root.MessageLog.username", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 107 }, { "content": " @property\n def recipient(self):\n if self.couch_recipient_doc_type == \"CommCareCase\":\n return CommCareCase.get(self.couch_recipient)\n else:\n return CouchUser.get_by_user_id(self.couch_recipient)", "metadata": "root.MessageLog.recipient", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 121 }, { "content": " @classmethod\n def by_domain_asc(cls, domain):\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Log queries not yet implemented for base class\")\n return cls.view(\"sms/by_domain\",\n reduce=False,\n startkey=[domain, cls.__name__],\n endkey=[domain, cls.__name__] + [{}],\n include_docs=True,\n descending=False)", "metadata": "root.MessageLog.by_domain_asc", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 128 }, { "content": " @classmethod\n def by_domain_dsc(cls, domain):\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Log queries not yet implemented for base class\")\n return cls.view(\"sms/by_domain\",\n reduce=False,\n startkey=[domain, cls.__name__] + [{}],\n endkey=[domain, cls.__name__],\n include_docs=True,\n descending=True)", "metadata": "root.MessageLog.by_domain_dsc", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 139 }, { "content": " @classmethod\n def count_by_domain(cls, domain, start_date = None, end_date = {}):\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Log queries not yet implemented for base class\")\n if not end_date:\n end_date = {}\n reduced = cls.view(\"sms/by_domain\",\n startkey=[domain, cls.__name__] + [start_date],\n endkey=[domain, cls.__name__] + [end_date],\n reduce=True).all()\n if reduced:\n return reduced[0]['value']\n return 0", "metadata": "root.MessageLog.count_by_domain", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 150 }, { "content": " @classmethod\n def count_incoming_by_domain(cls, domain, start_date = None, end_date = {}):\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Log queries not yet implemented for base class\")\n if not end_date:\n end_date = {}\n reduced = cls.view(\"sms/direction_by_domain\",\n startkey=[domain, cls.__name__, \"I\"] + [start_date],\n endkey=[domain, cls.__name__, \"I\"] + [end_date],\n reduce=True).all()\n if reduced:\n return reduced[0]['value']\n return 0", "metadata": "root.MessageLog.count_incoming_by_domain", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 164 }, { "content": " @classmethod\n def count_outgoing_by_domain(cls, domain, start_date = None, end_date = {}):\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Log queries not yet implemented for base class\")\n if not end_date:\n end_date = {}\n reduced = cls.view(\"sms/direction_by_domain\",\n startkey=[domain, cls.__name__, \"O\"] + [start_date],\n endkey=[domain, cls.__name__, \"O\"] + [end_date],\n reduce=True).all()\n if reduced:\n return reduced[0]['value']\n return 0", "metadata": "root.MessageLog.count_outgoing_by_domain", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 178 }, { "content": " @classmethod\n def by_domain_date(cls, domain, start_date = None, end_date = {}):\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Log queries not yet implemented for base class\")\n return cls.view(\"sms/by_domain\",\n reduce=False,\n startkey=[domain, cls.__name__] + [start_date],\n endkey=[domain, cls.__name__] + [end_date],\n include_docs=True)", "metadata": "root.MessageLog.by_domain_date", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 192 }, { "content": " @classmethod\n def inbound_entry_exists(cls, contact_doc_type, contact_id, from_timestamp, to_timestamp=None):\n \"\"\"\n Checks to see if an inbound sms or call exists for the given caller.\n\n contact_doc_type - The doc_type of the contact (e.g., \"CommCareCase\")\n contact_id - The _id of the contact\n after_timestamp - The datetime after which to check for the existence of an entry\n\n return True if an sms/call exists in the log, False if not.\n \"\"\"\n if cls.__name__ == \"MessageLog\":\n raise NotImplementedError(\"Not implemented for base class\")\n from_timestamp_str = json_format_datetime(from_timestamp)\n to_timestamp_str = json_format_datetime(to_timestamp or datetime.utcnow())\n reduced = cls.view(\"sms/by_recipient\",\n startkey=[contact_doc_type, contact_id, cls.__name__, INCOMING, from_timestamp_str],\n endkey=[contact_doc_type, contact_id, cls.__name__, INCOMING, to_timestamp_str],\n reduce=True).all()\n if reduced:\n return (reduced[0]['value'] > 0)\n else:\n return False", "metadata": "root.MessageLog.inbound_entry_exists", "header": "['class', 'MessageLog', '(', 'SafeSaveDocument', ',', 'UnicodeMixIn', ')', ':', '___EOS___']", "index": 202 }, { "content": "class SMSLog(MessageLog):\n text = StringProperty()\n # In cases where decoding must occur, this is the raw text received\n # from the gateway\n raw_text = StringProperty()\n # This is the unique message id that the gateway uses to track this\n # message, if applicable.\n backend_message_id = StringProperty()\n # True if this was an inbound message that was an\n # invalid response to a survey question\n invalid_survey_response = BooleanProperty(default=False)\n\n messaging_subevent_id = IntegerProperty()\n\n", "metadata": "root.SMSLog", "header": "['module', '___EOS___']", "index": 227 }, { "content": " @property\n def outbound_backend(self):\n \"\"\"appropriate outbound sms backend\"\"\"\n if self.backend_id:\n return SQLMobileBackend.load(self.backend_id, is_couch_id=True)\n else:\n return SQLMobileBackend.load_default_by_phone_and_domain(\n SQLMobileBackend.SMS,\n smsutil.clean_phone_number(self.phone_number),\n domain=self.domain\n )", "metadata": "root.SMSLog.outbound_backend", "header": "['class', 'SMSLog', '(', 'MessageLog', ')', ':', '___EOS___']", "index": 241 }, { "content": " def __unicode__(self):\n\n # crop the text (to avoid exploding the admin)\n if len(self.text) < 60: str = self.text\n else: str = \"%s...\" % (self.text[0:57])\n\n to_from = (self.direction == INCOMING) and \"from\" or \"to\"\n return \"%s (%s %s)\" % (str, to_from, self.phone_number)", "metadata": "root.SMSLog.__unicode__", "header": "['class', 'SMSLog', '(', 'MessageLog', ')', ':', '___EOS___']", "index": 253 }, { "content": "class Log(models.Model):\n class Meta:\n abstract = True\n app_label = \"sms\"\n\n domain = models.CharField(max_length=126, null=True, db_index=True)\n date = models.DateTimeField(null=True, db_index=True)\n couch_recipient_doc_type = models.CharField(max_length=126, null=True, db_index=True)\n couch_recipient = models.CharField(max_length=126, null=True, db_index=True)\n phone_number = models.CharField(max_length=126, null=True, db_index=True)\n direction = models.CharField(max_length=1, null=True)\n error = models.NullBooleanField(default=False)\n system_error_message = models.TextField(null=True)\n system_phone_number = models.CharField(max_length=126, null=True)\n backend_api = models.CharField(max_length=126, null=True)\n backend_id = models.CharField(max_length=126, null=True)\n billed = models.NullBooleanField(default=False)\n\n # Describes what kind of workflow this log was a part of\n workflow = models.CharField(max_length=126, null=True)\n\n # If this log is related to a survey, this points to the couch_id\n # of an instance of SQLXFormsSession that this log is tied to\n xforms_session_couch_id = models.CharField(max_length=126, null=True, db_index=True)\n\n # If this log is related to a reminder, this points to the _id of a\n # CaseReminder instance that it is tied to\n reminder_id = models.CharField(max_length=126, null=True)\n location_id = models.CharField(max_length=126, null=True)\n\n # The MessagingSubEvent that this log is tied to\n messaging_subevent = models.ForeignKey('MessagingSubEvent', null=True, on_delete=models.PROTECT)\n\n\n\n\n\n\n", "metadata": "root.Log", "header": "['module', '___EOS___']", "index": 263 }, { "content": " def set_system_error(self, message=None):\n self.error = True\n self.system_error_message = message\n self.save()", "metadata": "root.Log.set_system_error", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 296 }, { "content": " @classmethod\n def by_domain(cls, domain, start_date=None, end_date=None):\n qs = cls.objects.filter(domain=domain)\n\n if start_date:\n qs = qs.filter(date__gte=start_date)\n\n if end_date:\n qs = qs.filter(date__lte=end_date)\n\n return qs", "metadata": "root.Log.by_domain", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 301 }, { "content": " @classmethod\n def by_recipient(cls, contact_doc_type, contact_id):\n return cls.objects.filter(\n couch_recipient_doc_type=contact_doc_type,\n couch_recipient=contact_id,\n )", "metadata": "root.Log.by_recipient", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 313 }, { "content": " @classmethod\n def get_last_log_for_recipient(cls, contact_doc_type, contact_id, direction=None):\n qs = cls.by_recipient(contact_doc_type, contact_id)\n\n if direction:\n qs = qs.filter(direction=direction)\n\n qs = qs.order_by('-date')[:1]\n\n if qs:\n return qs[0]\n\n return None", "metadata": "root.Log.get_last_log_for_recipient", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 320 }, { "content": " @classmethod\n def count_by_domain(cls, domain, direction=None):\n qs = cls.objects.filter(domain=domain)\n\n if direction:\n qs = qs.filter(direction=direction)\n\n return qs.count()", "metadata": "root.Log.count_by_domain", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 334 }, { "content": " @property\n def recipient(self):\n if self.couch_recipient_doc_type == 'CommCareCase':\n return CommCareCase.get(self.couch_recipient)\n else:\n return CouchUser.get_by_user_id(self.couch_recipient)", "metadata": "root.Log.recipient", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 343 }, { "content": " @classmethod\n def inbound_entry_exists(cls, contact_doc_type, contact_id, from_timestamp, to_timestamp=None):\n qs = cls.by_recipient(\n contact_doc_type,\n contact_id\n ).filter(\n direction=INCOMING,\n date__gte=from_timestamp\n )\n\n if to_timestamp:\n qs = qs.filter(\n date__lte=to_timestamp\n )\n\n return len(qs[:1]) > 0", "metadata": "root.Log.inbound_entry_exists", "header": "['class', 'Log', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 350 }, { "content": "class SMSBase(UUIDGeneratorMixin, Log):\n ERROR_TOO_MANY_UNSUCCESSFUL_ATTEMPTS = 'TOO_MANY_UNSUCCESSFUL_ATTEMPTS'\n ERROR_MESSAGE_IS_STALE = 'MESSAGE_IS_STALE'\n ERROR_INVALID_DIRECTION = 'INVALID_DIRECTION'\n ERROR_PHONE_NUMBER_OPTED_OUT = 'PHONE_NUMBER_OPTED_OUT'\n ERROR_INVALID_DESTINATION_NUMBER = 'INVALID_DESTINATION_NUMBER'\n ERROR_MESSAGE_TOO_LONG = 'MESSAGE_TOO_LONG'\n\n ERROR_MESSAGES = {\n ERROR_TOO_MANY_UNSUCCESSFUL_ATTEMPTS:\n ugettext_noop('Gateway error.'),\n ERROR_MESSAGE_IS_STALE:\n ugettext_noop('Message is stale and will not be processed.'),\n ERROR_INVALID_DIRECTION:\n ugettext_noop('Unknown message direction.'),\n ERROR_PHONE_NUMBER_OPTED_OUT:\n ugettext_noop('Phone number has opted out of receiving SMS.'),\n ERROR_INVALID_DESTINATION_NUMBER:\n ugettext_noop(\"The gateway can't reach the destination number.\"),\n ERROR_MESSAGE_TOO_LONG:\n ugettext_noop(\"The gateway could not process the message because it was too long.\"),\n }\n\n UUIDS_TO_GENERATE = ['couch_id']\n\n couch_id = models.CharField(max_length=126, null=True, db_index=True)\n text = models.TextField(null=True)\n\n # In cases where decoding must occur, this is the raw text received\n # from the gateway\n raw_text = models.TextField(null=True)\n datetime_to_process = models.DateTimeField(null=True, db_index=True)\n processed = models.NullBooleanField(default=True, db_index=True)\n num_processing_attempts = models.IntegerField(default=0, null=True)\n queued_timestamp = models.DateTimeField(null=True)\n processed_timestamp = models.DateTimeField(null=True)\n\n # If the message was simulated from a domain, this is the domain\n domain_scope = models.CharField(max_length=126, null=True)\n\n # Set to True to send the message regardless of whether the destination\n # phone number has opted-out. Should only be used to send opt-out\n # replies or other info-related queries while opted-out.\n ignore_opt_out = models.NullBooleanField(default=False)\n\n # This is the unique message id that the gateway uses to track this\n # message, if applicable.\n backend_message_id = models.CharField(max_length=126, null=True)\n\n # For outgoing sms only: if this sms was sent from a chat window,\n # the _id of the CouchUser who sent this sms; otherwise None\n chat_user_id = models.CharField(max_length=126, null=True)\n\n # True if this was an inbound message that was an\n # invalid response to a survey question\n invalid_survey_response = models.NullBooleanField(default=False)\n\n \"\"\" Custom properties. For the initial migration, it makes it easier\n to put these here. Eventually they should be moved to a separate table. \"\"\"\n fri_message_bank_lookup_completed = models.NullBooleanField(default=False)\n fri_message_bank_message_id = models.CharField(max_length=126, null=True)\n fri_id = models.CharField(max_length=126, null=True)\n fri_risk_profile = models.CharField(max_length=1, null=True)\n\n class Meta:\n abstract = True\n app_label = 'sms'\n", "metadata": "root.SMSBase", "header": "['module', '___EOS___']", "index": 368 }, { "content": " @property\n def outbound_backend(self):\n if self.backend_id:\n return SQLMobileBackend.load(self.backend_id, is_couch_id=True)\n\n return SQLMobileBackend.load_default_by_phone_and_domain(\n SQLMobileBackend.SMS,\n smsutil.clean_phone_number(self.phone_number),\n domain=self.domain\n )", "metadata": "root.SMSBase.outbound_backend", "header": "['class', 'SMSBase', '(', 'UUIDGeneratorMixin', ',', 'Log', ')', ':', '___EOS___']", "index": 436 }, { "content": "class SMS(SMSBase):\n", "metadata": "root.SMS", "header": "['module', '___EOS___']", "index": 448 }, { "content": " def to_json(self):\n from corehq.apps.sms.serializers import SMSSerializer\n data = SMSSerializer(self).data\n return data", "metadata": "root.SMS.to_json", "header": "['class', 'SMS', '(', 'SMSBase', ')', ':', '___EOS___']", "index": 449 }, { "content": " def publish_change(self):\n from corehq.apps.sms.tasks import publish_sms_change\n publish_sms_change.delay(self)", "metadata": "root.SMS.publish_change", "header": "['class', 'SMS', '(', 'SMSBase', ')', ':', '___EOS___']", "index": 454 }, { "content": "class QueuedSMS(SMSBase):\n class Meta:\n db_table = 'sms_queued'\n", "metadata": "root.QueuedSMS", "header": "['module', '___EOS___']", "index": 459 }, { "content": " @classmethod\n def get_queued_sms(cls):\n return cls.objects.filter(\n datetime_to_process__lte=datetime.utcnow(),\n )", "metadata": "root.QueuedSMS.get_queued_sms", "header": "['class', 'QueuedSMS', '(', 'SMSBase', ')', ':', '___EOS___']", "index": 463 }, { "content": "class LastReadMessage(Document, CouchDocLockableMixIn):\n domain = StringProperty()\n # _id of CouchUser who read it\n read_by = StringProperty()\n # _id of the CouchUser or CommCareCase who the message was sent to\n # or from\n contact_id = StringProperty()\n # _id of the SMSLog entry\n message_id = StringProperty()\n # date of the SMSLog entry, stored here redundantly to prevent a lookup\n message_timestamp = DateTimeProperty()\n\n\n\n", "metadata": "root.LastReadMessage", "header": "['module', '___EOS___']", "index": 470 }, { "content": " @classmethod\n def get_obj(cls, domain, read_by, contact_id, *args, **kwargs):\n return LastReadMessage.view(\n \"sms/last_read_message\",\n key=[\"by_user\", domain, read_by, contact_id],\n include_docs=True\n ).one()", "metadata": "root.LastReadMessage.get_obj", "header": "['class', 'LastReadMessage', '(', 'Document', ',', 'CouchDocLockableMixIn', ')', ':', '___EOS___']", "index": 482 }, { "content": " @classmethod\n def create_obj(cls, domain, read_by, contact_id, *args, **kwargs):\n obj = LastReadMessage(\n domain=domain,\n read_by=read_by,\n contact_id=contact_id\n )\n obj.save()\n return obj", "metadata": "root.LastReadMessage.create_obj", "header": "['class', 'LastReadMessage', '(', 'Document', ',', 'CouchDocLockableMixIn', ')', ':', '___EOS___']", "index": 490 }, { "content": " @classmethod\n def by_user(cls, domain, user_id, contact_id):\n return cls.get_obj(domain, user_id, contact_id)", "metadata": "root.LastReadMessage.by_user", "header": "['class', 'LastReadMessage', '(', 'Document', ',', 'CouchDocLockableMixIn', ')', ':', '___EOS___']", "index": 500 }, { "content": " @classmethod\n def by_anyone(cls, domain, contact_id):\n return LastReadMessage.view(\n \"sms/last_read_message\",\n startkey=[\"by_anyone\", domain, contact_id, {}],\n endkey=[\"by_anyone\", domain, contact_id],\n descending=True,\n include_docs=True\n ).first()", "metadata": "root.LastReadMessage.by_anyone", "header": "['class', 'LastReadMessage', '(', 'Document', ',', 'CouchDocLockableMixIn', ')', ':', '___EOS___']", "index": 504 }, { "content": "class SQLLastReadMessage(UUIDGeneratorMixin, models.Model):\n class Meta:\n db_table = 'sms_lastreadmessage'\n app_label = 'sms'\n index_together = [\n ['domain', 'read_by', 'contact_id'],\n ['domain', 'contact_id'],\n ]\n\n UUIDS_TO_GENERATE = ['couch_id']\n\n couch_id = models.CharField(max_length=126, null=True, db_index=True)\n domain = models.CharField(max_length=126, null=True)\n\n # _id of CouchUser who read it\n read_by = models.CharField(max_length=126, null=True)\n\n # _id of the CouchUser or CommCareCase who the message was sent to\n # or from\n contact_id = models.CharField(max_length=126, null=True)\n\n # couch_id of the SMS\n message_id = models.CharField(max_length=126, null=True)\n\n # date of the SMS entry, stored here redundantly to prevent a lookup\n message_timestamp = models.DateTimeField(null=True)\n\n", "metadata": "root.SQLLastReadMessage", "header": "['module', '___EOS___']", "index": 515 }, { "content": " @classmethod\n def by_anyone(cls, domain, contact_id):\n \"\"\"\n Returns the SQLLastReadMessage representing the last chat message\n that was read by anyone in the given domain for the given contact_id.\n \"\"\"\n result = cls.objects.filter(\n domain=domain,\n contact_id=contact_id\n ).order_by('-message_timestamp')\n result = result[:1]\n\n if len(result) > 0:\n return result[0]\n\n return None", "metadata": "root.SQLLastReadMessage.by_anyone", "header": "['class', 'SQLLastReadMessage', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 542 }, { "content": " @classmethod\n def by_user(cls, domain, user_id, contact_id):\n \"\"\"\n Returns the SQLLastReadMessage representing the last chat message\n that was read in the given domain by the given user_id for the given\n contact_id.\n \"\"\"\n try:\n # It's not expected that this can raise MultipleObjectsReturned\n # since we lock out creation of these records with a CriticalSection.\n # So if that happens, let the exception raise.\n return cls.objects.get(\n domain=domain,\n read_by=user_id,\n contact_id=contact_id\n )\n except cls.DoesNotExist:\n return None", "metadata": "root.SQLLastReadMessage.by_user", "header": "['class', 'SQLLastReadMessage', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 559 }, { "content": "class CallLog(MessageLog):\n form_unique_id = StringProperty()\n answered = BooleanProperty(default=False)\n duration = IntegerProperty() # Length of the call in seconds\n gateway_session_id = StringProperty() # This is the session id returned from the backend\n xforms_session_id = StringProperty()\n error_message = StringProperty() # Error message from the gateway, if any\n submit_partial_form = BooleanProperty(default=False) # True to submit a partial form on hangup if it's not completed yet\n include_case_side_effects = BooleanProperty(default=False)\n max_question_retries = IntegerProperty() # Max number of times to retry a question with an invalid response before hanging up\n current_question_retry_count = IntegerProperty(default=0) # A counter of the number of invalid responses for the current question\n use_precached_first_response = BooleanProperty(default=False)\n first_response = StringProperty()\n # The id of the case to submit the form against\n case_id = StringProperty()\n case_for_case_submission = BooleanProperty(default=False)\n messaging_subevent_id = IntegerProperty()\n\n\n", "metadata": "root.CallLog", "header": "['module', '___EOS___']", "index": 579 }, { "content": " def __unicode__(self):\n to_from = (self.direction == INCOMING) and \"from\" or \"to\"\n return \"Call %s %s\" % (to_from, self.phone_number)", "metadata": "root.CallLog.__unicode__", "header": "['class', 'CallLog', '(', 'MessageLog', ')', ':', '___EOS___']", "index": 597 }, { "content": " @classmethod\n def answered_call_exists(cls, caller_doc_type, caller_id, after_timestamp,\n end_timestamp=None):\n \"\"\"\n Checks to see if an outbound call exists for the given caller that was successfully answered.\n \n caller_doc_type The doc_type of the caller (e.g., \"CommCareCase\").\n caller_id The _id of the caller's document.\n after_timestamp The datetime after which to check for the existence of a call.\n \n return True if a call exists in the CallLog, False if not.\n \"\"\"\n start_timestamp = json_format_datetime(after_timestamp)\n end_timestamp = json_format_datetime(end_timestamp or datetime.utcnow())\n calls = cls.view(\"sms/by_recipient\",\n startkey=[caller_doc_type, caller_id, \"CallLog\", OUTGOING, start_timestamp],\n endkey=[caller_doc_type, caller_id, \"CallLog\", OUTGOING, end_timestamp],\n reduce=False,\n include_docs=True).all()\n result = False\n for call in calls:\n if call.answered:\n result = True\n break\n return result", "metadata": "root.CallLog.answered_call_exists", "header": "['class', 'CallLog', '(', 'MessageLog', ')', ':', '___EOS___']", "index": 601 }, { "content": " @classmethod\n def get_call_by_gateway_session_id(cls, gateway_session_id):\n \"\"\"\n Returns the CallLog object, or None if not found.\n \"\"\"\n return CallLog.view('sms/call_by_session',\n startkey=[gateway_session_id, {}],\n endkey=[gateway_session_id],\n descending=True,\n include_docs=True,\n limit=1).one()", "metadata": "root.CallLog.get_call_by_gateway_session_id", "header": "['class', 'CallLog', '(', 'MessageLog', ')', ':', '___EOS___']", "index": 627 }, { "content": "class EventLog(SafeSaveDocument):\n base_doc = \"EventLog\"\n domain = StringProperty()\n date = DateTimeProperty()\n couch_recipient_doc_type = StringProperty()\n couch_recipient = StringProperty()", "metadata": "root.EventLog", "header": "['module', '___EOS___']", "index": 640 }, { "content": "class ExpectedCallbackEventLog(EventLog):\n status = StringProperty(choices=[CALLBACK_PENDING,CALLBACK_RECEIVED,CALLBACK_MISSED])\n ", "metadata": "root.ExpectedCallbackEventLog", "header": "['module', '___EOS___']", "index": 648 }, { "content": " @classmethod\n def by_domain(cls, domain, start_date=None, end_date={}):\n \"\"\"\n Note that start_date and end_date are expected in JSON format.\n \"\"\"\n return cls.view(\"sms/expected_callback_event\",\n startkey=[domain, start_date],\n endkey=[domain, end_date],\n include_docs=True).all()", "metadata": "root.ExpectedCallbackEventLog.by_domain", "header": "['class', 'ExpectedCallbackEventLog', '(', 'EventLog', ')', ':', '___EOS___']", "index": 651 }, { "content": "class ExpectedCallback(UUIDGeneratorMixin, models.Model):\n class Meta:\n app_label = 'sms'\n index_together = [\n ['domain', 'date'],\n ]\n\n STATUS_CHOICES = (\n (CALLBACK_PENDING, ugettext_lazy(\"Pending\")),\n (CALLBACK_RECEIVED, ugettext_lazy(\"Received\")),\n (CALLBACK_MISSED, ugettext_lazy(\"Missed\")),\n )\n\n UUIDS_TO_GENERATE = ['couch_id']\n\n couch_id = models.CharField(max_length=126, null=True, db_index=True)\n domain = models.CharField(max_length=126, null=True, db_index=True)\n date = models.DateTimeField(null=True)\n couch_recipient_doc_type = models.CharField(max_length=126, null=True)\n couch_recipient = models.CharField(max_length=126, null=True, db_index=True)\n status = models.CharField(max_length=126, null=True)\n\n", "metadata": "root.ExpectedCallback", "header": "['module', '___EOS___']", "index": 662 }, { "content": " @classmethod\n def by_domain(cls, domain, start_date=None, end_date=None):\n qs = cls.objects.filter(domain=domain)\n\n if start_date:\n qs = qs.filter(date__gte=start_date)\n\n if end_date:\n qs = qs.filter(date__lte=end_date)\n\n return qs", "metadata": "root.ExpectedCallback.by_domain", "header": "['class', 'ExpectedCallback', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 684 }, { "content": " @classmethod\n def by_domain_recipient_date(cls, domain, recipient_id, date):\n try:\n return cls.objects.get(\n domain=domain,\n couch_recipient=recipient_id,\n date=date\n )\n except cls.DoesNotExist:\n return None", "metadata": "root.ExpectedCallback.by_domain_recipient_date", "header": "['class', 'ExpectedCallback', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 696 }, { "content": "class ForwardingRule(Document):\n domain = StringProperty()\n forward_type = StringProperty(choices=FORWARDING_CHOICES)\n keyword = StringProperty()\n backend_id = StringProperty() # id of MobileBackend which will be used to do the forwarding\n ", "metadata": "root.ForwardingRule", "header": "['module', '___EOS___']", "index": 708 }, { "content": " def retire(self):\n self.doc_type += \"-Deleted\"\n self.save()", "metadata": "root.ForwardingRule.retire", "header": "['class', 'ForwardingRule', '(', 'Document', ')', ':', '___EOS___']", "index": 714 }, { "content": "class PhoneBlacklist(models.Model):\n \"\"\"\n Each entry represents a single phone number and whether we can send SMS\n to that number or make calls to that number.\n \"\"\"\n\n phone_number = models.CharField(max_length=30, unique=True, null=False, db_index=True)\n\n # True if it's ok to send SMS to this phone number, False if not\n send_sms = models.BooleanField(null=False, default=True)\n\n # True if it's ok to call this phone number, False if not\n # This is not yet implemented but will be in the future.\n send_ivr = models.BooleanField(null=False, default=True)\n\n # True to allow this phone number to opt back in, False if not\n can_opt_in = models.BooleanField(null=False, default=True)\n\n class Meta:\n app_label = 'sms'\n\n\n\n\n\n", "metadata": "root.PhoneBlacklist", "header": "['module', '___EOS___']", "index": 719 }, { "content": " @classmethod\n def get_by_phone_number(cls, phone_number):\n phone_number = smsutil.strip_plus(phone_number)\n return cls.objects.get(phone_number=phone_number)", "metadata": "root.PhoneBlacklist.get_by_phone_number", "header": "['class', 'PhoneBlacklist', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 740 }, { "content": " @classmethod\n def get_by_phone_number_or_none(cls, phone_number):\n try:\n return cls.get_by_phone_number(phone_number)\n except cls.DoesNotExist:\n return None", "metadata": "root.PhoneBlacklist.get_by_phone_number_or_none", "header": "['class', 'PhoneBlacklist', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 745 }, { "content": " @classmethod\n def get_or_create(cls, phone_number):\n \"\"\"\n phone_number - should be a string of digits\n \"\"\"\n phone_number = smsutil.strip_plus(phone_number)\n if not phone_number:\n return (None, False)\n return cls.objects.get_or_create(phone_number=phone_number)", "metadata": "root.PhoneBlacklist.get_or_create", "header": "['class', 'PhoneBlacklist', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 752 }, { "content": " @classmethod\n def can_receive_sms(cls, phone_number):\n try:\n phone_obj = cls.get_by_phone_number(phone_number)\n return phone_obj.send_sms\n except cls.DoesNotExist:\n # This means the phone number has not opted-out\n return True", "metadata": "root.PhoneBlacklist.can_receive_sms", "header": "['class', 'PhoneBlacklist', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 762 }, { "content": " @classmethod\n def opt_in_sms(cls, phone_number):\n \"\"\"\n Opts a phone number in to receive SMS.\n Returns True if the number was actually opted-in, False if not.\n \"\"\"\n try:\n phone_obj = cls.get_by_phone_number(phone_number)\n if phone_obj.can_opt_in:\n phone_obj.send_sms = True\n phone_obj.save()\n return True\n except cls.DoesNotExist:\n pass\n return False", "metadata": "root.PhoneBlacklist.opt_in_sms", "header": "['class', 'PhoneBlacklist', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 771 }, { "content": " @classmethod\n def opt_out_sms(cls, phone_number):\n \"\"\"\n Opts a phone number out from receiving SMS.\n Returns True if the number was actually opted-out, False if not.\n \"\"\"\n phone_obj = cls.get_or_create(phone_number)[0]\n if phone_obj:\n phone_obj.send_sms = False\n phone_obj.save()\n return True\n return False", "metadata": "root.PhoneBlacklist.opt_out_sms", "header": "['class', 'PhoneBlacklist', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 787 }, { "content": "class PhoneNumber(SyncSQLToCouchMixin, models.Model):\n couch_id = models.CharField(max_length=126, db_index=True, null=True)\n domain = models.CharField(max_length=126, db_index=True, null=True)\n owner_doc_type = models.CharField(max_length=126, null=True)\n owner_id = models.CharField(max_length=126, db_index=True, null=True)\n phone_number = models.CharField(max_length=126, db_index=True, null=True)\n\n # Points to the name of a SQLMobileBackend (can be domain-level\n # or system-level) which represents the backend that will be used\n # when sending SMS to this number. Can be None to use domain/system\n # defaults.\n backend_id = models.CharField(max_length=126, null=True)\n\n # Points to the name of a SQLMobileBackend (can be domain-level\n # or system-level) which represents the backend that will be used\n # when making calls to this number. Can be None to use domain/system\n # defaults.\n ivr_backend_id = models.CharField(max_length=126, null=True)\n verified = models.NullBooleanField(default=False)\n contact_last_modified = models.DateTimeField(null=True)\n\n", "metadata": "root.PhoneNumber", "header": "['module', '___EOS___']", "index": 801 }, { "content": " @classmethod\n def _migration_get_fields(cls):\n return [\n 'domain',\n 'owner_doc_type',\n 'owner_id',\n 'phone_number',\n 'backend_id',\n 'ivr_backend_id',\n 'verified',\n 'contact_last_modified'\n ]", "metadata": "root.PhoneNumber._migration_get_fields", "header": "['class', 'PhoneNumber', '(', 'SyncSQLToCouchMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 822 }, { "content": " @classmethod\n def _migration_get_couch_model_class(cls):\n return VerifiedNumber", "metadata": "root.PhoneNumber._migration_get_couch_model_class", "header": "['class', 'PhoneNumber', '(', 'SyncSQLToCouchMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 835 }, { "content": "class MessagingStatusMixin(object):\n\n\n", "metadata": "root.MessagingStatusMixin", "header": "['module', '___EOS___']", "index": 840 }, { "content": " def refresh(self):\n return self.__class__.objects.get(pk=self.pk)", "metadata": "root.MessagingStatusMixin.refresh", "header": "['class', 'MessagingStatusMixin', '(', 'object', ')', ':', '___EOS___']", "index": 842 }, { "content": " def error(self, error_code, additional_error_text=None):\n self.status = MessagingEvent.STATUS_ERROR\n self.error_code = error_code\n self.additional_error_text = additional_error_text\n self.save()", "metadata": "root.MessagingStatusMixin.error", "header": "['class', 'MessagingStatusMixin', '(', 'object', ')', ':', '___EOS___']", "index": 845 }, { "content": " def completed(self):\n obj = self.refresh()\n if obj.status != MessagingEvent.STATUS_ERROR:\n obj.status = MessagingEvent.STATUS_COMPLETED\n obj.save()\n return obj", "metadata": "root.MessagingStatusMixin.completed", "header": "['class', 'MessagingStatusMixin', '(', 'object', ')', ':', '___EOS___']", "index": 851 }, { "content": "class MessagingEvent(models.Model, MessagingStatusMixin):\n \"\"\"\n Used to track the status of high-level events in the messaging\n framework. Examples of such high-level events include the firing\n of a reminder instance, the invoking of a keyword, or the sending\n of a broadcast.\n \"\"\"\n STATUS_IN_PROGRESS = 'PRG'\n STATUS_COMPLETED = 'CMP'\n STATUS_NOT_COMPLETED = 'NOT'\n STATUS_ERROR = 'ERR'\n\n STATUS_CHOICES = (\n (STATUS_IN_PROGRESS, ugettext_noop('In Progress')),\n (STATUS_COMPLETED, ugettext_noop('Completed')),\n (STATUS_NOT_COMPLETED, ugettext_noop('Not Completed')),\n (STATUS_ERROR, ugettext_noop('Error')),\n )\n\n SOURCE_BROADCAST = 'BRD'\n SOURCE_KEYWORD = 'KWD'\n SOURCE_REMINDER = 'RMD'\n SOURCE_UNRECOGNIZED = 'UNR'\n SOURCE_FORWARDED = 'FWD'\n SOURCE_OTHER = 'OTH'\n\n SOURCE_CHOICES = (\n (SOURCE_BROADCAST, ugettext_noop('Broadcast')),\n (SOURCE_KEYWORD, ugettext_noop('Keyword')),\n (SOURCE_REMINDER, ugettext_noop('Reminder')),\n (SOURCE_UNRECOGNIZED, ugettext_noop('Unrecognized')),\n (SOURCE_FORWARDED, ugettext_noop('Forwarded Message')),\n (SOURCE_OTHER, ugettext_noop('Other')),\n )\n\n CONTENT_NONE = 'NOP'\n CONTENT_SMS = 'SMS'\n CONTENT_SMS_CALLBACK = 'CBK'\n CONTENT_SMS_SURVEY = 'SVY'\n CONTENT_IVR_SURVEY = 'IVR'\n CONTENT_PHONE_VERIFICATION = 'VER'\n CONTENT_ADHOC_SMS = 'ADH'\n CONTENT_API_SMS = 'API'\n CONTENT_CHAT_SMS = 'CHT'\n CONTENT_EMAIL = 'EML'\n\n CONTENT_CHOICES = (\n (CONTENT_NONE, ugettext_noop('None')),\n (CONTENT_SMS, ugettext_noop('SMS Message')),\n (CONTENT_SMS_CALLBACK, ugettext_noop('SMS Expecting Callback')),\n (CONTENT_SMS_SURVEY, ugettext_noop('SMS Survey')),\n (CONTENT_IVR_SURVEY, ugettext_noop('IVR Survey')),\n (CONTENT_PHONE_VERIFICATION, ugettext_noop('Phone Verification')),\n (CONTENT_ADHOC_SMS, ugettext_noop('Manually Sent Message')),\n (CONTENT_API_SMS, ugettext_noop('Message Sent Via API')),\n (CONTENT_CHAT_SMS, ugettext_noop('Message Sent Via Chat')),\n (CONTENT_EMAIL, ugettext_noop('Email')),\n )\n\n RECIPIENT_CASE = 'CAS'\n RECIPIENT_MOBILE_WORKER = 'MOB'\n RECIPIENT_WEB_USER = 'WEB'\n RECIPIENT_USER_GROUP = 'UGP'\n RECIPIENT_CASE_GROUP = 'CGP'\n RECIPIENT_VARIOUS = 'MUL'\n RECIPIENT_LOCATION = 'LOC'\n RECIPIENT_LOCATION_PLUS_DESCENDANTS = 'LC+'\n RECIPIENT_VARIOUS_LOCATIONS = 'VLC'\n RECIPIENT_VARIOUS_LOCATIONS_PLUS_DESCENDANTS = 'VL+'\n RECIPIENT_UNKNOWN = 'UNK'\n\n RECIPIENT_CHOICES = (\n (RECIPIENT_CASE, ugettext_noop('Case')),\n (RECIPIENT_MOBILE_WORKER, ugettext_noop('Mobile Worker')),\n (RECIPIENT_WEB_USER, ugettext_noop('Web User')),\n (RECIPIENT_USER_GROUP, ugettext_noop('User Group')),\n (RECIPIENT_CASE_GROUP, ugettext_noop('Case Group')),\n (RECIPIENT_VARIOUS, ugettext_noop('Multiple Recipients')),\n (RECIPIENT_LOCATION, ugettext_noop('Location')),\n (RECIPIENT_LOCATION_PLUS_DESCENDANTS,\n ugettext_noop('Location (including child locations)')),\n (RECIPIENT_VARIOUS_LOCATIONS, ugettext_noop('Multiple Locations')),\n (RECIPIENT_VARIOUS_LOCATIONS_PLUS_DESCENDANTS,\n ugettext_noop('Multiple Locations (including child locations)')),\n (RECIPIENT_UNKNOWN, ugettext_noop('Unknown Contact')),\n )\n\n ERROR_NO_RECIPIENT = 'NO_RECIPIENT'\n ERROR_CANNOT_RENDER_MESSAGE = 'CANNOT_RENDER_MESSAGE'\n ERROR_UNSUPPORTED_COUNTRY = 'UNSUPPORTED_COUNTRY'\n ERROR_NO_PHONE_NUMBER = 'NO_PHONE_NUMBER'\n ERROR_NO_TWO_WAY_PHONE_NUMBER = 'NO_TWO_WAY_PHONE_NUMBER'\n ERROR_INVALID_CUSTOM_CONTENT_HANDLER = 'INVALID_CUSTOM_CONTENT_HANDLER'\n ERROR_CANNOT_LOAD_CUSTOM_CONTENT_HANDLER = 'CANNOT_LOAD_CUSTOM_CONTENT_HANDLER'\n ERROR_CANNOT_FIND_FORM = 'CANNOT_FIND_FORM'\n ERROR_FORM_HAS_NO_QUESTIONS = 'FORM_HAS_NO_QUESTIONS'\n ERROR_CASE_EXTERNAL_ID_NOT_FOUND = 'CASE_EXTERNAL_ID_NOT_FOUND'\n ERROR_MULTIPLE_CASES_WITH_EXTERNAL_ID_FOUND = 'MULTIPLE_CASES_WITH_EXTERNAL_ID_FOUND'\n ERROR_NO_CASE_GIVEN = 'NO_CASE_GIVEN'\n ERROR_NO_EXTERNAL_ID_GIVEN = 'NO_EXTERNAL_ID_GIVEN'\n ERROR_COULD_NOT_PROCESS_STRUCTURED_SMS = 'COULD_NOT_PROCESS_STRUCTURED_SMS'\n ERROR_SUBEVENT_ERROR = 'SUBEVENT_ERROR'\n ERROR_TOUCHFORMS_ERROR = 'TOUCHFORMS_ERROR'\n ERROR_INTERNAL_SERVER_ERROR = 'INTERNAL_SERVER_ERROR'\n ERROR_GATEWAY_ERROR = 'GATEWAY_ERROR'\n ERROR_NO_SUITABLE_GATEWAY = 'NO_SUITABLE_GATEWAY'\n ERROR_GATEWAY_NOT_FOUND = 'GATEWAY_NOT_FOUND'\n ERROR_NO_EMAIL_ADDRESS = 'NO_EMAIL_ADDRESS'\n ERROR_TRIAL_EMAIL_LIMIT_REACHED = 'TRIAL_EMAIL_LIMIT_REACHED'\n\n ERROR_MESSAGES = {\n ERROR_NO_RECIPIENT:\n ugettext_noop('No recipient'),\n ERROR_CANNOT_RENDER_MESSAGE:\n ugettext_noop('Error rendering message; please check syntax.'),\n ERROR_UNSUPPORTED_COUNTRY:\n ugettext_noop('Gateway does not support the destination country.'),\n ERROR_NO_PHONE_NUMBER:\n ugettext_noop('Contact has no phone number.'),\n ERROR_NO_TWO_WAY_PHONE_NUMBER:\n ugettext_noop('Contact has no two-way phone number.'),\n ERROR_INVALID_CUSTOM_CONTENT_HANDLER:\n ugettext_noop('Invalid custom content handler.'),\n ERROR_CANNOT_LOAD_CUSTOM_CONTENT_HANDLER:\n ugettext_noop('Cannot load custom content handler.'),\n ERROR_CANNOT_FIND_FORM:\n ugettext_noop('Cannot find form.'),\n ERROR_FORM_HAS_NO_QUESTIONS:\n ugettext_noop('No questions were available in the form. Please '\n 'check that the form has questions and that display conditions '\n 'are not preventing questions from being asked.'),\n ERROR_CASE_EXTERNAL_ID_NOT_FOUND:\n ugettext_noop('The case with the given external ID was not found.'),\n ERROR_MULTIPLE_CASES_WITH_EXTERNAL_ID_FOUND:\n ugettext_noop('Multiple cases were found with the given external ID.'),\n ERROR_NO_CASE_GIVEN:\n ugettext_noop('The form requires a case but no case was provided.'),\n ERROR_NO_EXTERNAL_ID_GIVEN:\n ugettext_noop('No external ID given; please include case external ID after keyword.'),\n ERROR_COULD_NOT_PROCESS_STRUCTURED_SMS:\n ugettext_noop('Error processing structured SMS.'),\n ERROR_SUBEVENT_ERROR:\n ugettext_noop('View details for more information.'),\n ERROR_TOUCHFORMS_ERROR:\n ugettext_noop('An error occurred in the formplayer service.'),\n ERROR_INTERNAL_SERVER_ERROR:\n ugettext_noop('Internal Server Error'),\n ERROR_GATEWAY_ERROR:\n ugettext_noop('Gateway error.'),\n ERROR_NO_SUITABLE_GATEWAY:\n ugettext_noop('No suitable gateway could be found.'),\n ERROR_GATEWAY_NOT_FOUND:\n ugettext_noop('Gateway could not be found.'),\n ERROR_NO_EMAIL_ADDRESS:\n ugettext_noop('Recipient has no email address.'),\n ERROR_TRIAL_EMAIL_LIMIT_REACHED:\n ugettext_noop(\"Cannot send any more reminder emails. The limit for \"\n \"sending reminder emails on a Trial plan has been reached.\"),\n }\n\n domain = models.CharField(max_length=126, null=False, db_index=True)\n date = models.DateTimeField(null=False, db_index=True)\n source = models.CharField(max_length=3, choices=SOURCE_CHOICES, null=False)\n source_id = models.CharField(max_length=126, null=True)\n content_type = models.CharField(max_length=3, choices=CONTENT_CHOICES, null=False)\n\n # Only used when content_type is CONTENT_SMS_SURVEY or CONTENT_IVR_SURVEY\n # This is redundantly stored here (as well as the subevent) so that it\n # doesn't have to be looked up for reporting.\n form_unique_id = models.CharField(max_length=126, null=True)\n form_name = models.TextField(null=True)\n\n # If any of the MessagingSubEvent status's are STATUS_ERROR, this is STATUS_ERROR\n status = models.CharField(max_length=3, choices=STATUS_CHOICES, null=False)\n error_code = models.CharField(max_length=126, null=True)\n additional_error_text = models.TextField(null=True)\n recipient_type = models.CharField(max_length=3, choices=RECIPIENT_CHOICES, null=True, db_index=True)\n recipient_id = models.CharField(max_length=126, null=True, db_index=True)\n\n class Meta:\n app_label = 'sms'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.MessagingEvent", "header": "['module', '___EOS___']", "index": 859 }, { "content": " @classmethod\n def get_recipient_type_from_doc_type(cls, recipient_doc_type):\n return {\n 'CommCareUser': cls.RECIPIENT_MOBILE_WORKER,\n 'WebUser': cls.RECIPIENT_WEB_USER,\n 'CommCareCase': cls.RECIPIENT_CASE,\n 'Group': cls.RECIPIENT_USER_GROUP,\n 'CommCareCaseGroup': cls.RECIPIENT_CASE_GROUP,\n }.get(recipient_doc_type, cls.RECIPIENT_UNKNOWN)", "metadata": "root.MessagingEvent.get_recipient_type_from_doc_type", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1041 }, { "content": " @classmethod\n def get_recipient_type(cls, recipient):\n return cls.get_recipient_type_from_doc_type(recipient.doc_type)", "metadata": "root.MessagingEvent.get_recipient_type", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1051 }, { "content": " @classmethod\n def _get_recipient_doc_type(cls, recipient_type):\n return {\n MessagingEvent.RECIPIENT_MOBILE_WORKER: 'CommCareUser',\n MessagingEvent.RECIPIENT_WEB_USER: 'WebUser',\n MessagingEvent.RECIPIENT_CASE: 'CommCareCase',\n MessagingEvent.RECIPIENT_USER_GROUP: 'Group',\n MessagingEvent.RECIPIENT_CASE_GROUP: 'CommCareCaseGroup',\n MessagingEvent.RECIPIENT_LOCATION: 'SQLLocation',\n MessagingEvent.RECIPIENT_LOCATION_PLUS_DESCENDANTS: 'SQLLocation',\n }.get(recipient_type, None)", "metadata": "root.MessagingEvent._get_recipient_doc_type", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1055 }, { "content": " def get_recipient_doc_type(self):\n return MessagingEvent._get_recipient_doc_type(self.recipient_type)", "metadata": "root.MessagingEvent.get_recipient_doc_type", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1067 }, { "content": " def create_subevent(self, reminder_definition, reminder, recipient):\n recipient_type = MessagingEvent.get_recipient_type(recipient)\n content_type, form_unique_id, form_name = self.get_content_info_from_reminder(\n reminder_definition, reminder, parent=self)\n\n obj = MessagingSubEvent.objects.create(\n parent=self,\n date=datetime.utcnow(),\n recipient_type=recipient_type,\n recipient_id=recipient.get_id if recipient_type else None,\n content_type=content_type,\n form_unique_id=form_unique_id,\n form_name=form_name,\n case_id=reminder.case_id,\n status=MessagingEvent.STATUS_IN_PROGRESS,\n )\n return obj", "metadata": "root.MessagingEvent.create_subevent", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1070 }, { "content": " def create_ivr_subevent(self, recipient, form_unique_id, case_id=None):\n recipient_type = MessagingEvent.get_recipient_type(recipient)\n obj = MessagingSubEvent.objects.create(\n parent=self,\n date=datetime.utcnow(),\n recipient_type=recipient_type,\n recipient_id=recipient.get_id if recipient_type else None,\n content_type=MessagingEvent.CONTENT_IVR_SURVEY,\n form_unique_id=form_unique_id,\n form_name=MessagingEvent.get_form_name_or_none(form_unique_id),\n case_id=case_id,\n status=MessagingEvent.STATUS_IN_PROGRESS,\n )\n return obj", "metadata": "root.MessagingEvent.create_ivr_subevent", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1088 }, { "content": " @classmethod\n def create_event_for_adhoc_sms(cls, domain, recipient=None,\n content_type=CONTENT_ADHOC_SMS, source=SOURCE_OTHER):\n if recipient:\n recipient_type = cls.get_recipient_type(recipient)\n recipient_id = recipient.get_id\n else:\n recipient_type = cls.RECIPIENT_UNKNOWN\n recipient_id = None\n\n obj = cls.objects.create(\n domain=domain,\n date=datetime.utcnow(),\n source=source,\n content_type=content_type,\n status=cls.STATUS_IN_PROGRESS,\n recipient_type=recipient_type,\n recipient_id=recipient_id,\n )\n return obj", "metadata": "root.MessagingEvent.create_event_for_adhoc_sms", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1103 }, { "content": " def create_structured_sms_subevent(self, case_id):\n obj = MessagingSubEvent.objects.create(\n parent=self,\n date=datetime.utcnow(),\n recipient_type=self.recipient_type,\n recipient_id=self.recipient_id,\n content_type=MessagingEvent.CONTENT_SMS_SURVEY,\n form_unique_id=self.form_unique_id,\n form_name=self.form_name,\n case_id=case_id,\n status=MessagingEvent.STATUS_IN_PROGRESS,\n )\n return obj", "metadata": "root.MessagingEvent.create_structured_sms_subevent", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1124 }, { "content": " def create_subevent_for_single_sms(self, recipient_doc_type=None,\n recipient_id=None, case=None, completed=False):\n obj = MessagingSubEvent.objects.create(\n parent=self,\n date=datetime.utcnow(),\n recipient_type=MessagingEvent.get_recipient_type_from_doc_type(recipient_doc_type),\n recipient_id=recipient_id,\n content_type=MessagingEvent.CONTENT_SMS,\n case_id=case.get_id if case else None,\n status=(MessagingEvent.STATUS_COMPLETED\n if completed\n else MessagingEvent.STATUS_IN_PROGRESS),\n )\n return obj", "metadata": "root.MessagingEvent.create_subevent_for_single_sms", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1138 }, { "content": " @property\n def subevents(self):\n return self.messagingsubevent_set.all()", "metadata": "root.MessagingEvent.subevents", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1153 }, { "content": " @classmethod\n def get_source_from_reminder(cls, reminder_definition):\n from corehq.apps.reminders.models import (REMINDER_TYPE_ONE_TIME,\n REMINDER_TYPE_DEFAULT)\n\n default = (cls.SOURCE_OTHER, None)\n return {\n REMINDER_TYPE_ONE_TIME:\n (cls.SOURCE_BROADCAST, reminder_definition.get_id),\n REMINDER_TYPE_DEFAULT:\n (cls.SOURCE_REMINDER, reminder_definition.get_id),\n }.get(reminder_definition.reminder_type, default)", "metadata": "root.MessagingEvent.get_source_from_reminder", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1157 }, { "content": " @classmethod\n def get_form_name_or_none(cls, form_unique_id):\n try:\n form = Form.get_form(form_unique_id)\n return form.full_path_name\n except:\n return None", "metadata": "root.MessagingEvent.get_form_name_or_none", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1170 }, { "content": " @classmethod\n def get_content_info_from_reminder(cls, reminder_definition, reminder, parent=None):\n from corehq.apps.reminders.models import (METHOD_SMS, METHOD_SMS_CALLBACK,\n METHOD_SMS_SURVEY, METHOD_IVR_SURVEY, METHOD_EMAIL)\n content_type = {\n METHOD_SMS: cls.CONTENT_SMS,\n METHOD_SMS_CALLBACK: cls.CONTENT_SMS_CALLBACK,\n METHOD_SMS_SURVEY: cls.CONTENT_SMS_SURVEY,\n METHOD_IVR_SURVEY: cls.CONTENT_IVR_SURVEY,\n METHOD_EMAIL: cls.CONTENT_EMAIL,\n }.get(reminder_definition.method, cls.CONTENT_SMS)\n\n form_unique_id = reminder.current_event.form_unique_id\n if parent and parent.form_unique_id == form_unique_id:\n form_name = parent.form_name\n else:\n form_name = (cls.get_form_name_or_none(form_unique_id)\n if form_unique_id else None)\n\n return (content_type, form_unique_id, form_name)", "metadata": "root.MessagingEvent.get_content_info_from_reminder", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1178 }, { "content": " @classmethod\n def get_content_info_from_keyword(cls, keyword):\n from corehq.apps.reminders.models import (METHOD_SMS, METHOD_SMS_SURVEY,\n METHOD_STRUCTURED_SMS, RECIPIENT_SENDER)\n\n content_type = cls.CONTENT_NONE\n form_unique_id = None\n form_name = None\n\n for action in keyword.actions:\n if action.recipient == RECIPIENT_SENDER:\n if action.action in (METHOD_SMS_SURVEY, METHOD_STRUCTURED_SMS):\n content_type = cls.CONTENT_SMS_SURVEY\n form_unique_id = action.form_unique_id\n form_name = cls.get_form_name_or_none(action.form_unique_id)\n elif action.action == METHOD_SMS:\n content_type = cls.CONTENT_SMS\n\n return (content_type, form_unique_id, form_name)", "metadata": "root.MessagingEvent.get_content_info_from_keyword", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1199 }, { "content": " @classmethod\n def create_from_reminder(cls, reminder_definition, reminder, recipient=None):\n if reminder_definition.messaging_event_id:\n return cls.objects.get(pk=reminder_definition.messaging_event_id)\n\n source, source_id = cls.get_source_from_reminder(reminder_definition)\n content_type, form_unique_id, form_name = cls.get_content_info_from_reminder(\n reminder_definition, reminder)\n\n if recipient and reminder_definition.recipient_is_list_of_locations(recipient):\n if len(recipient) == 1:\n recipient_type = (cls.RECIPIENT_LOCATION_PLUS_DESCENDANTS\n if reminder_definition.include_child_locations\n else cls.RECIPIENT_LOCATION)\n recipient_id = recipient[0].location_id\n elif len(recipient) > 1:\n recipient_type = (cls.RECIPIENT_VARIOUS_LOCATIONS_PLUS_DESCENDANTS\n if reminder_definition.include_child_locations\n else cls.RECIPIENT_VARIOUS_LOCATIONS)\n recipient_id = None\n else:\n # len(recipient) should never be 0 when we invoke this method,\n # but catching this situation here just in case\n recipient_type = cls.RECIPIENT_UNKNOWN\n recipient_id = None\n elif isinstance(recipient, list):\n recipient_type = cls.RECIPIENT_VARIOUS\n recipient_id = None\n elif recipient is None:\n recipient_type = cls.RECIPIENT_UNKNOWN\n recipient_id = None\n else:\n recipient_type = cls.get_recipient_type(recipient)\n recipient_id = recipient.get_id if recipient_type else None\n\n return cls.objects.create(\n domain=reminder_definition.domain,\n date=datetime.utcnow(),\n source=source,\n source_id=source_id,\n content_type=content_type,\n form_unique_id=form_unique_id,\n form_name=form_name,\n status=cls.STATUS_IN_PROGRESS,\n recipient_type=recipient_type,\n recipient_id=recipient_id\n )", "metadata": "root.MessagingEvent.create_from_reminder", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1219 }, { "content": " @classmethod\n def create_from_keyword(cls, keyword, contact):\n \"\"\"\n keyword - the keyword object\n contact - the person who initiated the keyword\n \"\"\"\n content_type, form_unique_id, form_name = cls.get_content_info_from_keyword(\n keyword)\n recipient_type = cls.get_recipient_type(contact)\n\n return cls.objects.create(\n domain=keyword.domain,\n date=datetime.utcnow(),\n source=cls.SOURCE_KEYWORD,\n source_id=keyword.get_id,\n content_type=content_type,\n form_unique_id=form_unique_id,\n form_name=form_name,\n status=cls.STATUS_IN_PROGRESS,\n recipient_type=recipient_type,\n recipient_id=contact.get_id if recipient_type else None\n )", "metadata": "root.MessagingEvent.create_from_keyword", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1267 }, { "content": " @classmethod\n def create_verification_event(cls, domain, contact):\n recipient_type = cls.get_recipient_type(contact)\n return cls.objects.create(\n domain=domain,\n date=datetime.utcnow(),\n source=cls.SOURCE_OTHER,\n content_type=cls.CONTENT_PHONE_VERIFICATION,\n status=cls.STATUS_IN_PROGRESS,\n recipient_type=recipient_type,\n recipient_id=contact.get_id if recipient_type else None\n )", "metadata": "root.MessagingEvent.create_verification_event", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1290 }, { "content": " @classmethod\n def get_current_verification_event(cls, domain, contact_id, phone_number):\n \"\"\"\n Returns the latest phone verification event that is in progress\n for the given contact and phone number, or None if one does not exist.\n \"\"\"\n qs = cls.objects.filter(\n domain=domain,\n recipient_id=contact_id,\n messagingsubevent__sms__phone_number=smsutil.clean_phone_number(phone_number),\n content_type=cls.CONTENT_PHONE_VERIFICATION,\n status=cls.STATUS_IN_PROGRESS\n )\n return qs.order_by('-date')[0] if qs.count() > 0 else None", "metadata": "root.MessagingEvent.get_current_verification_event", "header": "['class', 'MessagingEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1303 }, { "content": "class MessagingSubEvent(models.Model, MessagingStatusMixin):\n \"\"\"\n Used to track the status of a MessagingEvent for each of its recipients.\n \"\"\"\n RECIPIENT_CHOICES = (\n (MessagingEvent.RECIPIENT_CASE, ugettext_noop('Case')),\n (MessagingEvent.RECIPIENT_MOBILE_WORKER, ugettext_noop('Mobile Worker')),\n (MessagingEvent.RECIPIENT_WEB_USER, ugettext_noop('Web User')),\n )\n\n parent = models.ForeignKey('MessagingEvent')\n date = models.DateTimeField(null=False, db_index=True)\n recipient_type = models.CharField(max_length=3, choices=RECIPIENT_CHOICES, null=False)\n recipient_id = models.CharField(max_length=126, null=True)\n content_type = models.CharField(max_length=3, choices=MessagingEvent.CONTENT_CHOICES, null=False)\n\n # Only used when content_type is CONTENT_SMS_SURVEY or CONTENT_IVR_SURVEY\n form_unique_id = models.CharField(max_length=126, null=True)\n form_name = models.TextField(null=True)\n xforms_session = models.ForeignKey('smsforms.SQLXFormsSession', null=True, on_delete=models.PROTECT)\n\n # If this was a reminder that spawned off of a case, this is the case's id\n case_id = models.CharField(max_length=126, null=True)\n status = models.CharField(max_length=3, choices=MessagingEvent.STATUS_CHOICES, null=False)\n error_code = models.CharField(max_length=126, null=True)\n additional_error_text = models.TextField(null=True)\n\n class Meta:\n app_label = 'sms'\n\n", "metadata": "root.MessagingSubEvent", "header": "['module', '___EOS___']", "index": 1319 }, { "content": " def save(self, *args, **kwargs):\n super(MessagingSubEvent, self).save(*args, **kwargs)\n parent = self.parent\n\n # If this event is in an errored state, also set the parent\n # event to an errored state.\n if self.status == MessagingEvent.STATUS_ERROR:\n parent.status = MessagingEvent.STATUS_ERROR\n parent.save()\n\n # If the parent event had various recipients, mark it as such,\n # unless the source was a keyword in which case the recipient\n # listed should always be the keyword initiator.\n if (parent.source != MessagingEvent.SOURCE_KEYWORD and\n (parent.recipient_id != self.recipient_id or self.recipient_id is None) and\n parent.recipient_type not in (\n MessagingEvent.RECIPIENT_USER_GROUP,\n MessagingEvent.RECIPIENT_CASE_GROUP,\n MessagingEvent.RECIPIENT_VARIOUS,\n MessagingEvent.RECIPIENT_LOCATION,\n MessagingEvent.RECIPIENT_LOCATION_PLUS_DESCENDANTS,\n MessagingEvent.RECIPIENT_VARIOUS_LOCATIONS,\n MessagingEvent.RECIPIENT_VARIOUS_LOCATIONS_PLUS_DESCENDANTS,\n ) and len(parent.subevents) > 1):\n parent.recipient_type = MessagingEvent.RECIPIENT_VARIOUS\n parent.recipient_id = None\n parent.save()", "metadata": "root.MessagingSubEvent.save", "header": "['class', 'MessagingSubEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1349 }, { "content": " def get_recipient_doc_type(self):\n return MessagingEvent._get_recipient_doc_type(self.recipient_type)", "metadata": "root.MessagingSubEvent.get_recipient_doc_type", "header": "['class', 'MessagingSubEvent', '(', 'models', '.', 'Model', ',', 'MessagingStatusMixin', ')', ':', '___EOS___']", "index": 1377 }, { "content": "class SelfRegistrationInvitation(models.Model):\n PHONE_TYPE_ANDROID = 'android'\n PHONE_TYPE_OTHER = 'other'\n PHONE_TYPE_CHOICES = (\n (PHONE_TYPE_ANDROID, ugettext_lazy('Android')),\n (PHONE_TYPE_OTHER, ugettext_lazy('Other')),\n )\n\n STATUS_PENDING = 'pending'\n STATUS_REGISTERED = 'registered'\n STATUS_EXPIRED = 'expired'\n\n domain = models.CharField(max_length=126, null=False, db_index=True)\n phone_number = models.CharField(max_length=30, null=False, db_index=True)\n token = models.CharField(max_length=126, null=False, unique=True, db_index=True)\n app_id = models.CharField(max_length=126, null=True)\n expiration_date = models.DateField(null=False)\n created_date = models.DateTimeField(null=False)\n odk_url = models.CharField(max_length=126, null=True)\n phone_type = models.CharField(max_length=20, null=True, choices=PHONE_TYPE_CHOICES)\n registered_date = models.DateTimeField(null=True)\n\n class Meta:\n app_label = 'sms'\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.SelfRegistrationInvitation", "header": "['module', '___EOS___']", "index": 1381 }, { "content": " @property\n def already_registered(self):\n return self.registered_date is not None", "metadata": "root.SelfRegistrationInvitation.already_registered", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1406 }, { "content": " @property\n def expired(self):\n \"\"\"\n The invitation is valid until 11:59pm UTC on the expiration date.\n \"\"\"\n return datetime.utcnow().date() > self.expiration_date", "metadata": "root.SelfRegistrationInvitation.expired", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1410 }, { "content": " @property\n def status(self):\n if self.already_registered:\n return self.STATUS_REGISTERED\n elif self.expired:\n return self.STATUS_EXPIRED\n else:\n return self.STATUS_PENDING", "metadata": "root.SelfRegistrationInvitation.status", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1417 }, { "content": " def completed(self):\n self.registered_date = datetime.utcnow()\n self.save()", "metadata": "root.SelfRegistrationInvitation.completed", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1426 }, { "content": " def send_step1_sms(self):\n from corehq.apps.sms.api import send_sms\n send_sms(\n self.domain,\n None,\n self.phone_number,\n get_message(MSG_MOBILE_WORKER_INVITATION_START, domain=self.domain)\n )", "metadata": "root.SelfRegistrationInvitation.send_step1_sms", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1430 }, { "content": " def send_step2_java_sms(self):\n from corehq.apps.sms.api import send_sms\n send_sms(\n self.domain,\n None,\n self.phone_number,\n get_message(MSG_MOBILE_WORKER_JAVA_INVITATION, context=(self.domain,), domain=self.domain)\n )", "metadata": "root.SelfRegistrationInvitation.send_step2_java_sms", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1439 }, { "content": " def send_step2_android_sms(self):\n from corehq.apps.sms.api import send_sms\n from corehq.apps.sms.views import InvitationAppInfoView\n from corehq.apps.users.views.mobile.users import CommCareUserSelfRegistrationView\n\n registration_url = absolute_reverse(CommCareUserSelfRegistrationView.urlname,\n args=[self.domain, self.token])\n send_sms(\n self.domain,\n None,\n self.phone_number,\n get_message(MSG_MOBILE_WORKER_ANDROID_INVITATION, context=(registration_url,), domain=self.domain)\n )\n\n \"\"\"\n # Until odk 2.24 gets released to the Google Play store, this part won't work\n if self.odk_url:\n app_info_url = absolute_reverse(InvitationAppInfoView.urlname,\n args=[self.domain, self.token])\n message = '[commcare app - do not delete] %s' % app_info_url\n send_sms(\n self.domain,\n None,\n self.phone_number,\n message,\n )\n \"\"\"", "metadata": "root.SelfRegistrationInvitation.send_step2_android_sms", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1448 }, { "content": " def expire(self):\n self.expiration_date = datetime.utcnow().date() - timedelta(days=1)\n self.save()", "metadata": "root.SelfRegistrationInvitation.expire", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1476 }, { "content": " @classmethod\n def get_unexpired_invitations(cls, phone_number):\n current_date = datetime.utcnow().date()\n return cls.objects.filter(\n phone_number=phone_number,\n expiration_date__gte=current_date,\n registered_date__isnull=True\n )", "metadata": "root.SelfRegistrationInvitation.get_unexpired_invitations", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1480 }, { "content": " @classmethod\n def expire_invitations(cls, phone_number):\n \"\"\"\n Expire all invitations for the given phone number that have not\n yet expired.\n \"\"\"\n for invitation in cls.get_unexpired_invitations(phone_number):\n invitation.expire()", "metadata": "root.SelfRegistrationInvitation.expire_invitations", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1489 }, { "content": " @classmethod\n def by_token(cls, token):\n try:\n return cls.objects.get(token=token)\n except cls.DoesNotExist:\n return None", "metadata": "root.SelfRegistrationInvitation.by_token", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1498 }, { "content": " @classmethod\n def by_phone(cls, phone_number, expire_duplicates=True):\n \"\"\"\n Look up the unexpired invitation for the given phone number.\n In the case of duplicates, only the most recent invitation\n is returned.\n If expire_duplicates is True, then any duplicates are automatically\n expired.\n Returns the invitation, or None if no unexpired invitations exist.\n \"\"\"\n phone_number = apply_leniency(phone_number)\n result = cls.get_unexpired_invitations(phone_number).order_by('-created_date')\n\n if len(result) == 0:\n return None\n\n invitation = result[0]\n if expire_duplicates and len(result) > 1:\n for i in result[1:]:\n i.expire()\n\n return invitation", "metadata": "root.SelfRegistrationInvitation.by_phone", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1505 }, { "content": " @classmethod\n def get_app_odk_url(cls, domain, app_id):\n \"\"\"\n Get the latest starred build (or latest build if none are\n starred) for the app and return it's odk install url.\n \"\"\"\n app = get_app(domain, app_id, latest=True)\n\n if not app.copy_of:\n # If latest starred build is not found, use the latest build\n app = get_app(domain, app_id, latest=True, target='build')\n\n if not app.copy_of:\n # If no build is found, return None\n return None\n\n return app.get_short_odk_url(with_media=True)", "metadata": "root.SelfRegistrationInvitation.get_app_odk_url", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1528 }, { "content": " @classmethod\n def initiate_workflow(cls, domain, phone_numbers, app_id=None,\n days_until_expiration=30):\n \"\"\"\n If app_id is passed in, then an additional SMS will be sent to Android\n phones containing a link to the latest starred build (or latest\n build if no starred build exists) for the app. Once ODK is installed,\n it will automatically search for this SMS and install this app.\n\n If app_id is left blank, the additional SMS is not sent, and once\n ODK is installed it just skips the automatic app install step.\n \"\"\"\n success_numbers = []\n invalid_format_numbers = []\n numbers_in_use = []\n\n odk_url = None\n if app_id:\n odk_url = cls.get_app_odk_url(domain, app_id)\n\n for phone_number in phone_numbers:\n phone_number = apply_leniency(phone_number)\n try:\n CommCareMobileContactMixin.validate_number_format(phone_number)\n except InvalidFormatException:\n invalid_format_numbers.append(phone_number)\n continue\n\n if VerifiedNumber.by_phone(phone_number, include_pending=True):\n numbers_in_use.append(phone_number)\n continue\n\n cls.expire_invitations(phone_number)\n\n expiration_date = (datetime.utcnow().date() +\n timedelta(days=days_until_expiration))\n\n invitation = cls.objects.create(\n domain=domain,\n phone_number=phone_number,\n token=uuid.uuid4().hex,\n app_id=app_id,\n expiration_date=expiration_date,\n created_date=datetime.utcnow(),\n odk_url=odk_url,\n )\n\n invitation.send_step1_sms()\n success_numbers.append(phone_number)\n\n return (success_numbers, invalid_format_numbers, numbers_in_use)", "metadata": "root.SelfRegistrationInvitation.initiate_workflow", "header": "['class', 'SelfRegistrationInvitation', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1546 }, { "content": "class ActiveMobileBackendManager(models.Manager):", "metadata": "root.ActiveMobileBackendManager", "header": "['module', '___EOS___']", "index": 1599 }, { "content": " def get_queryset(self):\n return super(ActiveMobileBackendManager, self).get_queryset().filter(deleted=False)", "metadata": "root.ActiveMobileBackendManager.get_queryset", "header": "['class', 'ActiveMobileBackendManager', '(', 'models', '.', 'Manager', ')', ':', '___EOS___']", "index": 1600 }, { "content": "class SQLMobileBackend(UUIDGeneratorMixin, models.Model):\n SMS = 'SMS'\n IVR = 'IVR'\n\n TYPE_CHOICES = (\n (SMS, ugettext_lazy('SMS')),\n (IVR, ugettext_lazy('IVR')),\n )\n\n UUIDS_TO_GENERATE = ['couch_id', 'inbound_api_key']\n\n objects = models.Manager()\n active_objects = ActiveMobileBackendManager()\n\n # We can't really get rid of this until all the messaging models are in\n # postgres. Once that happens we can migrate references to the couch_id\n # as a foreign key to postgres id and get rid of this field.\n couch_id = models.CharField(max_length=126, db_index=True, unique=True)\n backend_type = models.CharField(max_length=3, choices=TYPE_CHOICES, default=SMS)\n\n # This is an api key that the gateway uses when making inbound requests to hq.\n # This enforces gateway security and also allows us to tie every inbound request\n # to a specific backend.\n inbound_api_key = models.CharField(max_length=126, unique=True, db_index=True)\n\n # This tells us which type of backend this is\n hq_api_id = models.CharField(max_length=126, null=True)\n\n # Global backends are system owned and can be used by anyone\n is_global = models.BooleanField(default=False)\n\n # This is the domain that the backend belongs to, or None for\n # global backends\n domain = models.CharField(max_length=126, null=True, db_index=True)\n\n # A short name for a backend instance which is referenced when\n # setting a case contact's preferred backend\n name = models.CharField(max_length=126)\n\n # Simple name to display to users - e.g. \"Twilio\"\n display_name = models.CharField(max_length=126, null=True)\n\n # Optionally, a description of this backend\n description = models.TextField(null=True)\n\n # A JSON list of countries that this backend supports.\n # This information is displayed in the gateway list UI.\n # If this backend represents an international gateway,\n # set this to: [\"*\"]\n supported_countries = json_field.JSONField(default=[])\n\n # To avoid having many tables with so few records in them, all\n # SMS backends are stored in this same table. This field is a\n # JSON dict which stores any additional fields that the SMS\n # backend subclasses need.\n # NOTE: Do not access this field directly, instead use get_extra_fields()\n # and set_extra_fields()\n extra_fields = json_field.JSONField(default={})\n\n # For a historical view of sms data, we can't delete backends.\n # Instead, set a deleted flag when a backend should no longer be used.\n deleted = models.BooleanField(default=False)\n\n # If the backend uses load balancing, this is a JSON list of the\n # phone numbers to load balance over.\n load_balancing_numbers = json_field.JSONField(default=[])\n\n # The phone number which you can text to or call in order to reply\n # to this backend\n reply_to_phone_number = models.CharField(max_length=126, null=True)\n\n class Meta:\n db_table = 'messaging_mobilebackend'\n app_label = 'sms'\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root.SQLMobileBackend", "header": "['module', '___EOS___']", "index": 1604 }, { "content": " @quickcache(['self.pk', 'domain'], timeout=5 * 60)\n def domain_is_shared(self, domain):\n \"\"\"\n Returns True if this backend has been shared with domain and domain\n has accepted the invitation.\n \"\"\"\n count = self.mobilebackendinvitation_set.filter(domain=domain, accepted=True).count()\n return count > 0", "metadata": "root.SQLMobileBackend.domain_is_shared", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1679 }, { "content": " def domain_is_authorized(self, domain):\n \"\"\"\n Returns True if the given domain is authorized to use this backend.\n \"\"\"\n return (self.is_global or\n domain == self.domain or\n self.domain_is_shared(domain))", "metadata": "root.SQLMobileBackend.domain_is_authorized", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1688 }, { "content": " @classmethod\n def name_is_unique(cls, name, domain=None, backend_id=None):\n if domain:\n result = cls.objects.filter(\n is_global=False,\n domain=domain,\n name=name,\n deleted=False\n )\n else:\n result = cls.objects.filter(\n is_global=True,\n name=name,\n deleted=False\n )\n\n result = result.values_list('id', flat=True)\n if len(result) == 0:\n return True\n\n if len(result) == 1:\n return result[0] == backend_id\n\n return False", "metadata": "root.SQLMobileBackend.name_is_unique", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1696 }, { "content": " def get_authorized_domain_list(self):\n return (self.mobilebackendinvitation_set.filter(accepted=True)\n .order_by('domain').values_list('domain', flat=True))", "metadata": "root.SQLMobileBackend.get_authorized_domain_list", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1721 }, { "content": " @classmethod\n def get_domain_backends(cls, backend_type, domain, count_only=False, offset=None, limit=None):\n \"\"\"\n Returns all the backends that the given domain has access to (that is,\n owned backends, shared backends, and global backends).\n \"\"\"\n domain_owned_backends = models.Q(is_global=False, domain=domain)\n domain_shared_backends = models.Q(\n is_global=False,\n mobilebackendinvitation__domain=domain,\n mobilebackendinvitation__accepted=True\n )\n global_backends = models.Q(is_global=True)\n\n # The left join to MobileBackendInvitation may cause there to be\n # duplicates here, so we need to call .distinct()\n result = SQLMobileBackend.objects.filter(\n (domain_owned_backends | domain_shared_backends | global_backends),\n deleted=False,\n backend_type=backend_type\n ).distinct()\n\n if count_only:\n return result.count()\n\n result = result.order_by('name').values_list('id', flat=True)\n if offset is not None and limit is not None:\n result = result[offset:offset + limit]\n\n return [cls.load(pk) for pk in result]", "metadata": "root.SQLMobileBackend.get_domain_backends", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1725 }, { "content": " @classmethod\n def get_global_backends_for_this_class(cls, backend_type):\n return cls.objects.filter(\n is_global=True,\n deleted=False,\n backend_type=backend_type,\n hq_api_id=cls.get_api_id()\n ).all()", "metadata": "root.SQLMobileBackend.get_global_backends_for_this_class", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1756 }, { "content": " @classmethod\n def get_global_backend_ids(cls, backend_type, couch_id=False):\n id_field = 'couch_id' if couch_id else 'id'\n return SQLMobileBackend.active_objects.filter(\n backend_type=backend_type,\n is_global=True\n ).values_list(id_field, flat=True)", "metadata": "root.SQLMobileBackend.get_global_backend_ids", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1765 }, { "content": " @classmethod\n def get_global_backends(cls, backend_type, count_only=False, offset=None, limit=None):\n result = SQLMobileBackend.objects.filter(\n is_global=True,\n deleted=False,\n backend_type=backend_type\n )\n\n if count_only:\n return result.count()\n\n result = result.order_by('name').values_list('id', flat=True)\n if offset is not None and limit is not None:\n result = result[offset:offset + limit]\n\n return [cls.load(pk) for pk in result]", "metadata": "root.SQLMobileBackend.get_global_backends", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1773 }, { "content": " @classmethod\n def get_domain_default_backend(cls, backend_type, domain, id_only=False):\n result = SQLMobileBackendMapping.objects.filter(\n is_global=False,\n domain=domain,\n backend_type=backend_type,\n prefix='*'\n ).values_list('backend_id', flat=True)\n\n if len(result) > 1:\n raise cls.MultipleObjectsReturned(\n \"More than one default backend found for backend_type %s, \"\n \"domain %s\" % (backend_type, domain)\n )\n elif len(result) == 1:\n if id_only:\n return result[0]\n else:\n return cls.load(result[0])\n else:\n return None", "metadata": "root.SQLMobileBackend.get_domain_default_backend", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1790 }, { "content": " @classmethod\n def load_default_backend(cls, backend_type, phone_number, domain=None):\n \"\"\"\n Chooses the appropriate backend based on the phone number's\n prefix, or returns None if no catch-all backend is configured.\n\n backend_type - SQLMobileBackend.SMS or SQLMobileBackend.IVR\n phone_number - the phone number\n domain - pass in a domain to choose the default backend from the domain's\n configured backends, otherwise leave None to choose from the\n system's configured backends\n \"\"\"\n backend_map = SQLMobileBackendMapping.get_prefix_to_backend_map(\n backend_type, domain=domain)\n backend_id = backend_map.get_backend_id_by_prefix(phone_number)\n if backend_id:\n return cls.load(backend_id)\n return None", "metadata": "root.SQLMobileBackend.load_default_backend", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1812 }, { "content": " @classmethod\n def load_default_by_phone_and_domain(cls, backend_type, phone_number, domain=None):\n \"\"\"\n Get the appropriate outbound backend to communicate with phone_number.\n\n backend_type - SQLMobileBackend.SMS or SQLMobileBackend.IVR\n phone_number - the phone number\n domain - the domain\n \"\"\"\n backend = None\n\n if domain:\n backend = cls.load_default_backend(backend_type, phone_number, domain=domain)\n\n if not backend:\n backend = cls.load_default_backend(backend_type, phone_number)\n\n if not backend:\n raise BadSMSConfigException(\"No suitable backend found for phone \"\n \"number and domain %s, %s\" %\n (phone_number, domain))\n\n return backend", "metadata": "root.SQLMobileBackend.load_default_by_phone_and_domain", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1831 }, { "content": " @classmethod\n @quickcache(['hq_api_id', 'inbound_api_key'], timeout=60 * 60)\n def get_backend_info_by_api_key(cls, hq_api_id, inbound_api_key):\n \"\"\"\n Looks up a backend by inbound_api_key and returns a tuple of\n (domain, couch_id). Including hq_api_id in the filter is an\n implicit way of making sure that the returned backend info belongs\n to a backend of that type.\n\n (The entire backend is not returned to reduce the amount of data\n needed to be returned by the cache)\n\n Raises cls.DoesNotExist if not found.\n \"\"\"\n result = (cls.active_objects\n .filter(hq_api_id=hq_api_id, inbound_api_key=inbound_api_key)\n .values_list('domain', 'couch_id'))\n\n if len(result) == 0:\n raise cls.DoesNotExist\n\n return result[0]", "metadata": "root.SQLMobileBackend.get_backend_info_by_api_key", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1855 }, { "content": " @classmethod\n @quickcache(['backend_id', 'is_couch_id'], timeout=60 * 60)\n def get_backend_api_id(cls, backend_id, is_couch_id=False):\n filter_args = {'couch_id': backend_id} if is_couch_id else {'pk': backend_id}\n result = (cls.active_objects\n .filter(**filter_args)\n .values_list('hq_api_id', flat=True))\n\n if len(result) == 0:\n raise cls.DoesNotExist\n\n return result[0]", "metadata": "root.SQLMobileBackend.get_backend_api_id", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1878 }, { "content": " @classmethod\n @quickcache(['backend_id', 'is_couch_id', 'include_deleted'], timeout=5 * 60)\n def load(cls, backend_id, api_id=None, is_couch_id=False, include_deleted=False):\n \"\"\"\n backend_id - the pk of the SQLMobileBackend to load\n api_id - if you know the hq_api_id of the SQLMobileBackend, pass it\n here for a faster lookup; otherwise, it will be looked up\n automatically\n is_couch_id - if True, then backend_id should be the couch_id to use\n during lookup instead of the postgres model's pk;\n we have to support both for a little while until all\n foreign keys are migrated over\n \"\"\"\n backend_classes = smsutil.get_backend_classes()\n api_id = api_id or cls.get_backend_api_id(backend_id, is_couch_id=is_couch_id)\n\n if api_id not in backend_classes:\n raise BadSMSConfigException(\"Unexpected backend api id found '%s' for \"\n \"backend '%s'\" % (api_id, backend_id))\n\n klass = backend_classes[api_id]\n\n if include_deleted:\n result = klass.objects\n else:\n result = klass.active_objects\n\n if is_couch_id:\n return result.get(couch_id=backend_id)\n else:\n return result.get(pk=backend_id)", "metadata": "root.SQLMobileBackend.load", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1891 }, { "content": " @classmethod\n def get_backend_from_id_and_api_id_result(cls, result):\n if len(result) > 0:\n return cls.load(result[0]['id'], api_id=result[0]['hq_api_id'])\n\n return None", "metadata": "root.SQLMobileBackend.get_backend_from_id_and_api_id_result", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1923 }, { "content": " @classmethod\n def get_owned_backend_by_name(cls, backend_type, domain, name):\n name = name.strip().upper()\n result = cls.active_objects.filter(\n is_global=False,\n backend_type=backend_type,\n domain=domain,\n name=name\n ).values('id', 'hq_api_id')\n return cls.get_backend_from_id_and_api_id_result(result)", "metadata": "root.SQLMobileBackend.get_owned_backend_by_name", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1930 }, { "content": " @classmethod\n def get_shared_backend_by_name(cls, backend_type, domain, name):\n name = name.strip().upper()\n result = cls.active_objects.filter(\n is_global=False,\n backend_type=backend_type,\n mobilebackendinvitation__domain=domain,\n mobilebackendinvitation__accepted=True,\n name=name\n ).values('id', 'hq_api_id').order_by('domain')\n return cls.get_backend_from_id_and_api_id_result(result)", "metadata": "root.SQLMobileBackend.get_shared_backend_by_name", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1941 }, { "content": " @classmethod\n def get_global_backend_by_name(cls, backend_type, name):\n name = name.strip().upper()\n result = cls.active_objects.filter(\n is_global=True,\n backend_type=backend_type,\n name=name\n ).values('id', 'hq_api_id')\n return cls.get_backend_from_id_and_api_id_result(result)", "metadata": "root.SQLMobileBackend.get_global_backend_by_name", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1953 }, { "content": " @classmethod\n def load_by_name(cls, backend_type, domain, name):\n \"\"\"\n Attempts to load the backend with the given name.\n If no matching backend is found, a BadSMSConfigException is raised.\n\n backend_type - SQLMobileBackend.SMS or SQLMobileBackend.IVR\n domain - the domain\n name - the name of the backend (corresponding to SQLMobileBackend.name)\n \"\"\"\n backend = cls.get_owned_backend_by_name(backend_type, domain, name)\n\n if not backend:\n backend = cls.get_shared_backend_by_name(backend_type, domain, name)\n\n if not backend:\n backend = cls.get_global_backend_by_name(backend_type, name)\n\n if not backend:\n raise BadSMSConfigException(\"Could not find %s backend '%s' from \"\n \"domain '%s'\" % (backend_type, name, domain))\n\n return backend", "metadata": "root.SQLMobileBackend.load_by_name", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1963 }, { "content": " @classmethod\n def get_api_id(cls):\n \"\"\"\n This method should return the backend's api id.\n \"\"\"\n raise NotImplementedError(\"Please implement this method\")", "metadata": "root.SQLMobileBackend.get_api_id", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1987 }, { "content": " @classmethod\n def get_generic_name(cls):\n \"\"\"\n This method should return a descriptive name for this backend\n (such as \"Unicel\" or \"Tropo\"), for use in identifying it to an end user.\n \"\"\"\n raise NotImplementedError(\"Please implement this method\")", "metadata": "root.SQLMobileBackend.get_generic_name", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 1994 }, { "content": " @classmethod\n def get_form_class(cls):\n \"\"\"\n This method should return a subclass of corehq.apps.sms.forms.BackendForm\n \"\"\"\n raise NotImplementedError(\"Please implement this method\")", "metadata": "root.SQLMobileBackend.get_form_class", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2002 }, { "content": " @classmethod\n def get_available_extra_fields(cls):\n \"\"\"\n Should return a list of field names that are the keys in\n the extra_fields dict.\n \"\"\"\n raise NotImplementedError(\"Please implement this method\")", "metadata": "root.SQLMobileBackend.get_available_extra_fields", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2009 }, { "content": " @property\n def config(self):\n \"\"\"\n Returns self.get_extra_fields() converted into a namedtuple so that\n you can reference self.config.gateway_user_id, for example,\n instead of self.get_extra_fields()['gateway_user_id']\n \"\"\"\n BackendConfig = namedtuple('BackendConfig', self.get_available_extra_fields())\n return BackendConfig(**self.get_extra_fields())", "metadata": "root.SQLMobileBackend.config", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2017 }, { "content": " def get_extra_fields(self):\n result = {field: None for field in self.get_available_extra_fields()}\n result.update(self.extra_fields)\n return result", "metadata": "root.SQLMobileBackend.get_extra_fields", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2027 }, { "content": " def set_extra_fields(self, **kwargs):\n \"\"\"\n Only updates the fields that are passed as kwargs, and leaves\n the rest untouched.\n \"\"\"\n result = self.get_extra_fields()\n for k, v in kwargs.iteritems():\n if k not in self.get_available_extra_fields():\n raise Exception(\"Field %s is not an available extra field for %s\"\n % (k, self.__class__.__name__))\n result[k] = v\n\n self.extra_fields = result", "metadata": "root.SQLMobileBackend.set_extra_fields", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2032 }, { "content": " def __clear_shared_domain_cache(self, new_domains):\n current_domains = self.mobilebackendinvitation_set.values_list('domain', flat=True)\n # Clear the cache for domains in new_domains or current_domains, but not both\n for domain in set(current_domains) ^ set(new_domains):\n self.domain_is_shared.clear(self, domain)", "metadata": "root.SQLMobileBackend.__clear_shared_domain_cache", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2046 }, { "content": " def set_shared_domains(self, domains):\n if self.id is None:\n raise Exception(\"Please call .save() on the backend before \"\n \"calling set_shared_domains()\")\n with transaction.atomic():\n self.__clear_shared_domain_cache(domains)\n self.mobilebackendinvitation_set.all().delete()\n self.mobilebackendinvitation_set = [\n MobileBackendInvitation(\n domain=domain,\n accepted=True,\n ) for domain in domains\n ]", "metadata": "root.SQLMobileBackend.set_shared_domains", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2052 }, { "content": " def soft_delete(self):\n with transaction.atomic():\n self.deleted = True\n self.__clear_shared_domain_cache([])\n self.mobilebackendinvitation_set.all().delete()\n for mapping in self.sqlmobilebackendmapping_set.all():\n # Delete one at a time so the backend map cache gets cleared\n # for the respective domain(s)\n mapping.delete()\n self.save()", "metadata": "root.SQLMobileBackend.soft_delete", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2066 }, { "content": " def __clear_caches(self):\n if self.pk:\n self.load.clear(SQLMobileBackend, self.pk, is_couch_id=False)\n self.get_backend_api_id.clear(SQLMobileBackend, self.pk, is_couch_id=False)\n\n if self.couch_id:\n self.load.clear(SQLMobileBackend, self.couch_id, is_couch_id=True)\n self.get_backend_api_id.clear(SQLMobileBackend, self.couch_id, is_couch_id=True)", "metadata": "root.SQLMobileBackend.__clear_caches", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2077 }, { "content": " def save(self, *args, **kwargs):\n self.__clear_caches()\n return super(SQLMobileBackend, self).save(*args, **kwargs)", "metadata": "root.SQLMobileBackend.save", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2086 }, { "content": " def delete(self, *args, **kwargs):\n self.__clear_caches()\n return super(SQLMobileBackend, self).delete(*args, **kwargs)", "metadata": "root.SQLMobileBackend.delete", "header": "['class', 'SQLMobileBackend', '(', 'UUIDGeneratorMixin', ',', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2090 }, { "content": "class SQLSMSBackend(SQLMobileBackend):\n class Meta:\n proxy = True\n app_label = 'sms'\n\n\n\n", "metadata": "root.SQLSMSBackend", "header": "['module', '___EOS___']", "index": 2095 }, { "content": " def get_sms_rate_limit(self):\n \"\"\"\n Override to use rate limiting. Return None to not use rate limiting,\n otherwise return the maximum number of SMS that should be sent by\n this backend instance in a one minute period.\n \"\"\"\n return None", "metadata": "root.SQLSMSBackend.get_sms_rate_limit", "header": "['class', 'SQLSMSBackend', '(', 'SQLMobileBackend', ')', ':', '___EOS___']", "index": 2100 }, { "content": " def send(self, msg, *args, **kwargs):\n raise NotImplementedError(\"Please implement this method.\")", "metadata": "root.SQLSMSBackend.send", "header": "['class', 'SQLSMSBackend', '(', 'SQLMobileBackend', ')', ':', '___EOS___']", "index": 2108 }, { "content": " @classmethod\n def get_opt_in_keywords(cls):\n \"\"\"\n Override to specify a set of opt-in keywords to use for this\n backend type.\n \"\"\"\n return []", "metadata": "root.SQLSMSBackend.get_opt_in_keywords", "header": "['class', 'SQLSMSBackend', '(', 'SQLMobileBackend', ')', ':', '___EOS___']", "index": 2111 }, { "content": " @classmethod\n def get_opt_out_keywords(cls):\n \"\"\"\n Override to specify a set of opt-out keywords to use for this\n backend type.\n \"\"\"\n return []", "metadata": "root.SQLSMSBackend.get_opt_out_keywords", "header": "['class', 'SQLSMSBackend', '(', 'SQLMobileBackend', ')', ':', '___EOS___']", "index": 2119 }, { "content": "class PhoneLoadBalancingMixin(object):\n \"\"\"\n If you need a backend to balance the outbound SMS load over a set of\n phone numbers, use this mixin. To use it:\n\n 1) Include this mixin in your backend class.\n 2) Have the send() method expect an orig_phone_number kwarg, which will\n be the phone number to send from. This parameter is always sent in for\n instances of PhoneLoadBalancingMixin, even if there's just one phone\n number in self.load_balancing_numbers.\n 3) Have the backend's form class use the LoadBalancingBackendFormMixin to\n automatically set the load balancing phone numbers in the UI.\n\n If the backend also uses rate limiting, then each phone number is rate\n limited separately as you would expect.\n\n (We could also just define these methods on the backend class itself, but\n it's useful in other parts of the framework to check if a backend\n is an instance of this mixin for performing various operations.)\n \"\"\"\n\n", "metadata": "root.PhoneLoadBalancingMixin", "header": "['module', '___EOS___']", "index": 2128 }, { "content": " def get_load_balance_redis_key(self):\n return 'load-balance-phones-for-backend-%s' % self.pk", "metadata": "root.PhoneLoadBalancingMixin.get_load_balance_redis_key", "header": "['class', 'PhoneLoadBalancingMixin', '(', 'object', ')', ':', '___EOS___']", "index": 2149 }, { "content": " def get_next_phone_number(self):\n if (\n not isinstance(self.load_balancing_numbers, list) or\n len(self.load_balancing_numbers) == 0\n ):\n raise Exception(\"Expected load_balancing_numbers to not be \"\n \"empty for backend %s\" % self.pk)\n\n if len(self.load_balancing_numbers) == 1:\n # If there's just one number, no need to go through the\n # process to figure out which one is next.\n return self.load_balancing_numbers[0]\n\n redis_key = self.get_load_balance_redis_key()\n return load_balance(redis_key, self.load_balancing_numbers)", "metadata": "root.PhoneLoadBalancingMixin.get_next_phone_number", "header": "['class', 'PhoneLoadBalancingMixin', '(', 'object', ')', ':', '___EOS___']", "index": 2152 }, { "content": "class BackendMap(object):\n", "metadata": "root.BackendMap", "header": "['module', '___EOS___']", "index": 2169 }, { "content": " def __init__(self, catchall_backend_id, backend_map):\n \"\"\"\n catchall_backend_id - the pk of the backend that is the default if\n no prefixes match (can be None if there is no\n catch all)\n backend_map - a dictionary of {prefix: backend pk} which\n maps a phone prefix to the backend which should be\n used for that phone prefix\n \"\"\"\n self.catchall_backend_id = catchall_backend_id\n self.backend_map_dict = backend_map\n self.backend_map_tuples = backend_map.items()\n # Sort by length of prefix descending\n self.backend_map_tuples.sort(key=lambda x: len(x[0]), reverse=True)", "metadata": "root.BackendMap.__init__", "header": "['class', 'BackendMap', '(', 'object', ')', ':', '___EOS___']", "index": 2170 }, { "content": " def get_backend_id_by_prefix(self, phone_number):\n phone_number = smsutil.strip_plus(phone_number)\n for prefix, backend_id in self.backend_map_tuples:\n if phone_number.startswith(prefix):\n return backend_id\n return self.catchall_backend_id", "metadata": "root.BackendMap.get_backend_id_by_prefix", "header": "['class', 'BackendMap', '(', 'object', ')', ':', '___EOS___']", "index": 2185 }, { "content": "class SQLMobileBackendMapping(models.Model):\n \"\"\"\n A SQLMobileBackendMapping instance is used to map SMS or IVR traffic\n to a given backend based on phone prefix.\n \"\"\"\n class Meta:\n db_table = 'messaging_mobilebackendmapping'\n app_label = 'sms'\n unique_together = ('domain', 'backend_type', 'prefix')\n\n couch_id = models.CharField(max_length=126, null=True, db_index=True)\n\n # True if this mapping applies globally (system-wide). False if it only applies\n # to a domain\n is_global = models.BooleanField(default=False)\n\n # The domain for which this mapping is valid; ignored if is_global is True\n domain = models.CharField(max_length=126, null=True)\n\n # Specifies whether this mapping is valid for SMS or IVR backends\n backend_type = models.CharField(max_length=3, choices=SQLMobileBackend.TYPE_CHOICES)\n\n # The phone prefix, or '*' for catch-all\n prefix = models.CharField(max_length=25)\n\n # The backend to use for the given phone prefix\n backend = models.ForeignKey('SQLMobileBackend')\n\n\n\n\n\n\n", "metadata": "root.SQLMobileBackendMapping", "header": "['module', '___EOS___']", "index": 2193 }, { "content": " @classmethod\n def __set_default_domain_backend(cls, domain, backend_type, backend=None):\n fields = dict(\n is_global=False,\n domain=domain,\n backend_type=backend_type,\n prefix='*'\n )\n\n obj = None\n try:\n # We can't use get_or_create because backend is a\n # required field\n obj = cls.objects.get(**fields)\n except cls.DoesNotExist:\n pass\n\n if not backend:\n if obj:\n obj.delete()\n return\n\n if not obj:\n obj = cls(**fields)\n\n obj.backend = backend\n obj.save()", "metadata": "root.SQLMobileBackendMapping.__set_default_domain_backend", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2221 }, { "content": " @classmethod\n def set_default_domain_backend(cls, domain, backend, backend_type=SQLMobileBackend.SMS):\n cls.__set_default_domain_backend(domain, backend_type, backend=backend)", "metadata": "root.SQLMobileBackendMapping.set_default_domain_backend", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2249 }, { "content": " @classmethod\n def unset_default_domain_backend(cls, domain, backend_type=SQLMobileBackend.SMS):\n cls.__set_default_domain_backend(domain, backend_type)", "metadata": "root.SQLMobileBackendMapping.unset_default_domain_backend", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2253 }, { "content": " @classmethod\n @quickcache(['backend_type', 'domain'], timeout=5 * 60)\n def get_prefix_to_backend_map(cls, backend_type, domain=None):\n \"\"\"\n backend_type - SQLMobileBackend.SMS or SQLMobileBackend.IVR\n domain - the domain for which to retrieve the backend map, otherwise if left None\n the global backend map will be returned.\n Returns a BackendMap\n \"\"\"\n if domain:\n filter_args = {'backend_type': backend_type, 'is_global': False, 'domain': domain}\n else:\n filter_args = {'backend_type': backend_type, 'is_global': True}\n\n catchall_backend_id = None\n backend_map = {}\n for instance in cls.objects.filter(**filter_args):\n if instance.prefix == '*':\n catchall_backend_id = instance.backend_id\n else:\n backend_map[instance.prefix] = instance.backend_id\n\n return BackendMap(catchall_backend_id, backend_map)", "metadata": "root.SQLMobileBackendMapping.get_prefix_to_backend_map", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2257 }, { "content": " def __clear_prefix_to_backend_map_cache(self):\n self.get_prefix_to_backend_map.clear(self.__class__, self.backend_type, domain=self.domain)", "metadata": "root.SQLMobileBackendMapping.__clear_prefix_to_backend_map_cache", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2281 }, { "content": " def save(self, *args, **kwargs):\n self.__clear_prefix_to_backend_map_cache()\n return super(SQLMobileBackendMapping, self).save(*args, **kwargs)", "metadata": "root.SQLMobileBackendMapping.save", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2284 }, { "content": " def delete(self, *args, **kwargs):\n self.__clear_prefix_to_backend_map_cache()\n return super(SQLMobileBackendMapping, self).delete(*args, **kwargs)", "metadata": "root.SQLMobileBackendMapping.delete", "header": "['class', 'SQLMobileBackendMapping', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2288 }, { "content": "class MobileBackendInvitation(models.Model):\n class Meta:\n db_table = 'messaging_mobilebackendinvitation'\n app_label = 'sms'\n unique_together = ('backend', 'domain')\n\n # The domain that is being invited to share another domain's backend\n domain = models.CharField(max_length=126, null=True, db_index=True)\n\n # The backend that is being shared\n backend = models.ForeignKey('SQLMobileBackend')\n accepted = models.BooleanField(default=False)", "metadata": "root.MobileBackendInvitation", "header": "['module', '___EOS___']", "index": 2293 }, { "content": "class MigrationStatus(models.Model):\n \"\"\"\n A model to keep track of whether certain messaging migrations have\n been run yet or not.\n \"\"\"\n\n MIGRATION_BACKEND = 'backend'\n MIGRATION_BACKEND_MAP = 'backend_map'\n MIGRATION_DOMAIN_DEFAULT_BACKEND = 'domain_default_backend'\n MIGRATION_LOGS = 'logs'\n\n class Meta:\n db_table = 'messaging_migrationstatus'\n app_label = \"sms\"\n\n # The name of the migration (one of the MIGRATION_* constants above)\n name = models.CharField(max_length=126)\n\n # The timestamp that the migration was run\n timestamp = models.DateTimeField(null=True)\n\n", "metadata": "root.MigrationStatus", "header": "['module', '___EOS___']", "index": 2307 }, { "content": " @classmethod\n def set_migration_completed(cls, name):\n obj, created = cls.objects.get_or_create(name=name)\n obj.timestamp = datetime.utcnow()\n obj.save()", "metadata": "root.MigrationStatus.set_migration_completed", "header": "['class', 'MigrationStatus', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2328 }, { "content": " @classmethod\n def has_migration_completed(cls, name):\n try:\n cls.objects.get(name=name)\n return True\n except cls.DoesNotExist:\n return False", "metadata": "root.MigrationStatus.has_migration_completed", "header": "['class', 'MigrationStatus', '(', 'models', '.', 'Model', ')', ':', '___EOS___']", "index": 2334 } ]

[ { "span": "import logging", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 14 }, { "span": "import uuidfield", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 16 }, { "span": "from corehq.apps.sms.mixin import (CommCareMobileContactMixin,\n PhoneNumberInUseException, InvalidFormatException, VerifiedNumber,\n apply_leniency, BadSMSConfigException)", "start_line": 19, "start_column": 0, "end_line": 21, "end_column": 42 }, { "span": "from dimagi.utils.couch.undo import DELETED_SUFFIX", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 50 }, { "span": "from dimagi.utils.logging import notify_exception", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 49 }, { "span": "from corehq.apps.sms import signals", "start_line": 2343, "start_column": 0, "end_line": 2343, "end_column": 35 } ]

[]

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[ { "content": " def testTooNear(self):\n self.SetArchiveContents(\n \"stops.txt\",\n \"stop_id,stop_name,stop_lat,stop_lon\\n\"\n \"BEATTY_AIRPORT,Airport,48.20000,140\\n\"\n \"BULLFROG,Bullfrog,48.20001,140\\n\"\n \"STAGECOACH,Stagecoach Hotel,48.20016,140\\n\")\n schedule = self.MakeLoaderAndLoad()\n e = self.accumulator.PopException('StopsTooClose')\n self.assertTrue(e.FormatProblem().find(\"1.11m apart\") != -1)\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.StopsNearEachOther.testTooNear", "header": "['class', 'StopsNearEachOther', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 214 }, { "content": " def testJustFarEnough(self):\n self.SetArchiveContents(\n \"stops.txt\",\n \"stop_id,stop_name,stop_lat,stop_lon\\n\"\n \"BEATTY_AIRPORT,Airport,48.20000,140\\n\"\n \"BULLFROG,Bullfrog,48.20002,140\\n\"\n \"STAGECOACH,Stagecoach Hotel,48.20016,140\\n\")\n schedule = self.MakeLoaderAndLoad()\n # Stops are 2.2m apart\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.StopsNearEachOther.testJustFarEnough", "header": "['class', 'StopsNearEachOther', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 226 }, { "content": " def testSameLocation(self):\n self.SetArchiveContents(\n \"stops.txt\",\n \"stop_id,stop_name,stop_lat,stop_lon\\n\"\n \"BEATTY_AIRPORT,Airport,48.2,140\\n\"\n \"BULLFROG,Bullfrog,48.2,140\\n\"\n \"STAGECOACH,Stagecoach Hotel,48.20016,140\\n\")\n schedule = self.MakeLoaderAndLoad()\n e = self.accumulator.PopException('StopsTooClose')\n self.assertTrue(e.FormatProblem().find(\"0.00m apart\") != -1)\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.StopsNearEachOther.testSameLocation", "header": "['class', 'StopsNearEachOther', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 237 }, { "content": " def testStationsTooNear(self):\n self.SetArchiveContents(\n \"stops.txt\",\n \"stop_id,stop_name,stop_lat,stop_lon,location_type,parent_station\\n\"\n \"BEATTY_AIRPORT,Airport,48.20000,140,,BEATTY_AIRPORT_STATION\\n\"\n \"BULLFROG,Bullfrog,48.20003,140,,BULLFROG_STATION\\n\"\n \"BEATTY_AIRPORT_STATION,Airport,48.20001,140,1,\\n\"\n \"BULLFROG_STATION,Bullfrog,48.20002,140,1,\\n\"\n \"STAGECOACH,Stagecoach Hotel,48.20016,140,,\\n\")\n schedule = self.MakeLoaderAndLoad()\n e = self.accumulator.PopException('StationsTooClose')\n self.assertTrue(e.FormatProblem().find(\"1.11m apart\") != -1)\n self.assertTrue(e.FormatProblem().find(\"BEATTY_AIRPORT_STATION\") != -1)\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.StopsNearEachOther.testStationsTooNear", "header": "['class', 'StopsNearEachOther', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 249 }, { "content": " def testStopNearNonParentStation(self):\n self.SetArchiveContents(\n \"stops.txt\",\n \"stop_id,stop_name,stop_lat,stop_lon,location_type,parent_station\\n\"\n \"BEATTY_AIRPORT,Airport,48.20000,140,,\\n\"\n \"BULLFROG,Bullfrog,48.20005,140,,\\n\"\n \"BULLFROG_STATION,Bullfrog,48.20006,140,1,\\n\"\n \"STAGECOACH,Stagecoach Hotel,48.20016,140,,\\n\")\n schedule = self.MakeLoaderAndLoad()\n e = self.accumulator.PopException('DifferentStationTooClose')\n fmt = e.FormatProblem()\n self.assertTrue(re.search(\n r\"parent_station of.*BULLFROG.*station.*BULLFROG_STATION.* 1.11m apart\",\n fmt), fmt)\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.StopsNearEachOther.testStopNearNonParentStation", "header": "['class', 'StopsNearEachOther', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 264 }, { "content": " def testNoCalendarDates(self):\n self.RemoveArchive(\"calendar_dates.txt\")\n self.MakeLoaderAndLoad()\n e = self.accumulator.PopException(\"NoServiceExceptions\")\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.NoServiceExceptionsTestCase.testNoCalendarDates", "header": "['class', 'NoServiceExceptionsTestCase', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 283 }, { "content": " def testEmptyCalendarDates(self):\n self.SetArchiveContents(\n \"calendar_dates.txt\",\n \"\")\n self.MakeLoaderAndLoad()\n e = self.accumulator.PopException(\"EmptyFile\")\n e = self.accumulator.PopException(\"NoServiceExceptions\")\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.NoServiceExceptionsTestCase.testEmptyCalendarDates", "header": "['class', 'NoServiceExceptionsTestCase', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 300 }, { "content": " def testCalendarDatesWithHeaderOnly(self):\n self.SetArchiveContents(\n \"calendar_dates.txt\",\n \"service_id,date,exception_type\\n\")\n self.MakeLoaderAndLoad()\n e = self.accumulator.PopException(\"NoServiceExceptions\")\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.NoServiceExceptionsTestCase.testCalendarDatesWithHeaderOnly", "header": "['class', 'NoServiceExceptionsTestCase', '(', 'util', '.', 'MemoryZipTestCase', ')', ':', '___EOS___']", "index": 309 }, { "content": " def runTest(self):\n schedule = transitfeed.Schedule(problem_reporter=self.problems)\n schedule.AddAgency(\"Sample Agency\", \"http://example.com\",\n \"America/Los_Angeles\")\n route = transitfeed.Route()\n route.route_id = \"SAMPLE_ID\"\n route.route_type = 3\n route.route_long_name = \"Sample Route\"\n schedule.AddRouteObject(route)\n\n service_period = transitfeed.ServicePeriod(\"WEEK\")\n service_period.SetStartDate(\"20070101\")\n service_period.SetEndDate(\"20071231\")\n service_period.SetWeekdayService(True)\n schedule.AddServicePeriodObject(service_period)\n\n trip = transitfeed.Trip()\n trip.route_id = \"SAMPLE_ID\"\n trip.service_id = \"WEEK\"\n trip.trip_id = \"SAMPLE_TRIP\"\n schedule.AddTripObject(trip)\n\n stop1 = transitfeed.Stop()\n stop1.stop_id = \"STOP1\"\n stop1.stop_name = \"Stop 1\"\n stop1.stop_lat = 78.243587\n stop1.stop_lon = 32.258937\n schedule.AddStopObject(stop1)\n trip.AddStopTime(stop1, arrival_time=\"12:00:00\", departure_time=\"12:00:00\")\n\n stop2 = transitfeed.Stop()\n stop2.stop_id = \"STOP2\"\n stop2.stop_name = \"Stop 2\"\n stop2.stop_lat = 78.253587\n stop2.stop_lon = 32.258937\n schedule.AddStopObject(stop2)\n trip.AddStopTime(stop2, arrival_time=\"12:05:00\", departure_time=\"12:05:00\")\n schedule.Validate()\n\n stop3 = transitfeed.Stop()\n stop3.stop_id = \"STOP3\"\n stop3.stop_name = \"Stop 3\"\n stop3.stop_lat = 78.243587\n stop3.stop_lon = 32.268937\n schedule.AddStopObject(stop3)\n trip.AddStopTime(stop3, arrival_time=\"12:10:00\", departure_time=\"12:10:00\")\n schedule.Validate()\n self.accumulator.AssertNoMoreExceptions()\n\n stop4 = transitfeed.Stop()\n stop4.stop_id = \"STOP4\"\n stop4.stop_name = \"Stop 4\"\n stop4.stop_lat = 78.243588\n stop4.stop_lon = 32.268936\n schedule.AddStopObject(stop4)\n trip.AddStopTime(stop4, arrival_time=\"12:15:00\", departure_time=\"12:15:00\")\n schedule.Validate()\n e = self.accumulator.PopException('StopsTooClose')\n self.accumulator.AssertNoMoreExceptions()", "metadata": "root.DuplicateStopValidationTestCase.runTest", "header": "['class', 'DuplicateStopValidationTestCase', '(', 'util', '.', 'ValidationTestCase', ')', ':', '___EOS___']", "index": 649 }, { "content": " def test_AssumeSingleAgencyIsDefault(self):\n schedule = transitfeed.Schedule()\n agency1 = self.freeAgency()\n schedule.AddAgencyObject(agency1)\n agency2 = self.freeAgency('2') # don't add to schedule\n # agency1 is default because it is the only Agency in schedule\n self.assertEqual(agency1, schedule.GetDefaultAgency())", "metadata": "root.DefaultAgencyTestCase.test_AssumeSingleAgencyIsDefault", "header": "['class', 'DefaultAgencyTestCase', '(', 'util', '.', 'TestCase', ')', ':', '___EOS___']", "index": 834 } ]

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[ { "content": "#: E501\na = '12345678901234567890123456789012345678901234567890123456789012345678901234567890'\n#: E502\na = ('123456789012345678901234567890123456789012345678901234567890123456789' \\\n '01234567890')\n#: E502\na = ('AAA \\\n BBB' \\\n 'CCC')\n#: E502\nif (foo is None and bar is \"e000\" and \\\n blah == 'yeah'):\n blah = 'yeahnah'\n#\n#: Okay\na = ('AAA'\n 'BBB')\n\na = ('AAA \\\n BBB'\n 'CCC')\n\na = 'AAA' \\\n 'BBB' \\\n 'CCC'\n\na = ('AAA\\\nBBBBBBBBB\\\nCCCCCCCCC\\\nDDDDDDDDD')\n#\n#: Okay\nif aaa:\n pass\nelif bbb or \\\n ccc:\n pass\n\nddd = \\\n ccc\n\n('\\\n ' + ' \\\n')\n('''\n ''' + ' \\\n')\n#: E501 E225 E226\nvery_long_identifiers=and_terrible_whitespace_habits(are_no_excuse+for_long_lines)\n#\n#: E501\n'''multiline string\nwith a long long long long long long long long long long long long long long long long line\n'''\n#: E501\n'''same thing, but this time without a terminal newline in the string\nlong long long long long long long long long long long long long long long long line'''\n#\n# issue 224 (unavoidable long lines in docstrings)\n#: Okay\n\"\"\"\nI'm some great documentation. Because I'm some great documentation, I'm\ngoing to give you a reference to some valuable information about some API\nthat I'm calling:\n\n http://msdn.microsoft.com/en-us/library/windows/desktop/aa363858(v=vs.85).aspx\n\"\"\"\n#: E501\n\"\"\"\nlongnospaceslongnospaceslongnospaceslongnospaceslongnospaceslongnospaceslongnospaceslongnospaces\"\"\"\n#: Okay\n\"\"\"\nThis\n almost_empty_line\n\"\"\"\n#: E501\n\"\"\"\nThis\n almost_empty_line\n\"\"\"\n#: E501\n# A basic comment\n# with a long long long long long long long long long long long long long long long long line\n\n#\n#: Okay\n# I'm some great comment. Because I'm so great, I'm going to give you a\n# reference to some valuable information about some API that I'm calling:\n#\n# http://msdn.microsoft.com/en-us/library/windows/desktop/aa363858(v=vs.85).aspx\n\nimport this\n\n# longnospaceslongnospaceslongnospaceslongnospaceslongnospaceslongnospaceslongnospaceslongnospaces\n\n#\n#: Okay\n# This\n# almost_empty_line\n\n#\n#: E501\n# This\n# almost_empty_line\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

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[]

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[ { "content": " def _check_available_balance_reminder(self, card, last_state):\n \"\"\" Check if card stored value has increased \"\"\"\n if card.stored_value is not None and last_state.stored_value is not None:\n try:\n if float(card.stored_value) > float(last_state.stored_value):\n return True\n except:\n app.logger.exception('Exception checking available balance')\n pass\n\n return False", "metadata": "root.Reminder._check_available_balance_reminder", "header": "['class', 'Reminder', '(', 'BaseDocument', ')', ':', '___EOS___']", "index": 152 }, { "content": " def _check_balance_reminder(self, card, last_state=None):\n \"\"\" Check card stored value \"\"\"\n if card.stored_value is not None:\n try:\n current_value = float(card.stored_value)\n\n # Pedantic - make sure the last value isn't identical\n if last_state is not None and last_state.stored_value is not None:\n last_value = float(last_state.stored_value)\n if current_value == last_value:\n app.logger.info('No change in stored value %s since last reminder: %s' % (current_value, card.last_four))\n return False\n\n return current_value > 0 and current_value <= float(self.threshold)\n except:\n app.logger.exception('Exception checking balance')\n pass\n\n return False", "metadata": "root.Reminder._check_balance_reminder", "header": "['class', 'Reminder', '(', 'BaseDocument', ')', ':', '___EOS___']", "index": 183 }, { "content": " def _check_round_trip_reminder(self, card, last_state=None):\n \"\"\" Checks products for remaining round trips that have fallen below threshold \"\"\"\n remind = False\n threshold = int(self.threshold)\n\n for product in card.products:\n if product.remaining_rides is None:\n continue\n\n try:\n # This does take into consideration half trips\n round_trips = product.remaining_rides / 2.0\n should_remind = round_trips < threshold\n\n # Pedantic - check last state products for name match\n # and number of round trips\n if last_state:\n last_trips = None\n\n # Find a matching product to compare\n for last in last_state.products:\n if last.name != product.name or last.remaining_rides is None:\n continue\n last_trips = last.remaining_rides / 2.0\n break\n\n if last_trips is not None:\n pedantic_remind = last_trips != round_trips and should_remind\n\n app.logger.info('Ensuring a change in %s round trips for %s: %s' % (round_trips, product.name, pedantic_remind))\n remind = remind or pedantic_remind\n continue\n\n # The default case\n remind = remind or should_remind\n except:\n app.logger.exception('Exception checking round trips')\n pass\n\n return remind", "metadata": "root.Reminder._check_round_trip_reminder", "header": "['class', 'Reminder', '(', 'BaseDocument', ')', ':', '___EOS___']", "index": 232 }, { "content": " def _check_ride_reminder(self, card, last_state=None):\n \"\"\" Checks products for remaining rides that have fallen below threshold \"\"\"\n remind = False\n threshold = int(self.threshold)\n for product in card.products:\n if product.remaining_rides is None:\n continue\n\n try:\n remaining_rides = int(product.remaining_rides)\n should_remind = remaining_rides <= threshold\n\n # Pedantic - check last state products for name match\n # and number of remaining rides\n if last_state:\n last_rides = None\n\n for last in last_state.products:\n if last.name != product.name or last.remaining_rides is None:\n continue\n last_rides = int(last.remaining_rides)\n break\n\n if last_rides is not None:\n pedantic_remind = last_rides != remaining_rides and should_remind\n\n app.logger.info('Ensuring a change in %s rides for %s: %s' % (remaining_rides, product.name, pedantic_remind))\n remind = remind or pedantic_remind\n continue\n\n remind = remind or should_remind\n except:\n app.logger.exception('Exception checking rides')\n pass\n\n return remind", "metadata": "root.Reminder._check_ride_reminder", "header": "['class', 'Reminder', '(', 'BaseDocument', ')', ':', '___EOS___']", "index": 273 } ]

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[ { "content": "def test(a=[]):\n a.append(1)\n return a", "metadata": "root.test", "header": "['module', '___EOS___']", "index": 0 } ]

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[ { "content": " def test_topological_sort_fundamentals(self):\n FKF = ForeignKeyField\n # we will be topo-sorting the following models\n class A(Model): pass\n class B(Model): a = FKF(A) # must follow A\n class C(Model): a, b = FKF(A), FKF(B) # must follow A and B\n class D(Model): c = FKF(C) # must follow A and B and C\n class E(Model): e = FKF('self')\n # but excluding this model, which is a child of E\n class Excluded(Model): e = FKF(E)\n\n # property 1: output ordering must not depend upon input order\n repeatable_ordering = None\n for input_ordering in permutations([A, B, C, D, E]):\n output_ordering = sort_models_topologically(input_ordering)\n repeatable_ordering = repeatable_ordering or output_ordering\n self.assertEqual(repeatable_ordering, output_ordering)\n\n # property 2: output ordering must have same models as input\n self.assertEqual(len(output_ordering), 5)\n self.assertFalse(Excluded in output_ordering)\n\n # property 3: parents must precede children\n def assert_precedes(X, Y):\n lhs, rhs = map(output_ordering.index, [X, Y])\n self.assertTrue(lhs < rhs)\n assert_precedes(A, B)\n assert_precedes(B, C) # if true, C follows A by transitivity\n assert_precedes(C, D) # if true, D follows A and B by transitivity\n\n # property 4: independent model hierarchies must be in name order\n assert_precedes(A, E)", "metadata": "root.TestTopologicalSorting.test_topological_sort_fundamentals", "header": "['class', 'TestTopologicalSorting', '(', 'PeeweeTestCase', ')', ':', '___EOS___']", "index": 34 } ]

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[ { "content": "class StopNow:\n 'Class emulating an empty iterable.'", "metadata": "root.StopNow", "header": "['module', '___EOS___']", "index": 29 }, { "content": " def __iter__(self):\n return self", "metadata": "root.StopNow.__iter__", "header": "['class', 'StopNow', ':', '___EOS___']", "index": 31 }, { "content": "class I:\n 'Sequence using iterator protocol'", "metadata": "root.I", "header": "['module', '___EOS___']", "index": 497 }, { "content": " def __iter__(self):\n return self", "metadata": "root.I.__iter__", "header": "['class', 'I', ':', '___EOS___']", "index": 502 }, { "content": "class N:\n 'Iterator missing next()'", "metadata": "root.N", "header": "['module', '___EOS___']", "index": 530 }, { "content": " def __iter__(self):\n return self", "metadata": "root.N.__iter__", "header": "['class', 'N', ':', '___EOS___']", "index": 535 }, { "content": "class E:\n 'Test propagation of exceptions'", "metadata": "root.E", "header": "['module', '___EOS___']", "index": 538 }, { "content": " def __iter__(self):\n return self", "metadata": "root.E.__iter__", "header": "['class', 'E', ':', '___EOS___']", "index": 543 }, { "content": "class S:\n 'Test immediate stop'", "metadata": "root.S", "header": "['module', '___EOS___']", "index": 548 }, { "content": " def __iter__(self):\n return self", "metadata": "root.S.__iter__", "header": "['class', 'S', ':', '___EOS___']", "index": 552 } ]

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[ { "span": "def __iter__(self):", "start_line": 31, "start_column": 4, "end_line": 31, "end_column": 23 }, { "span": "def __iter__(self):", "start_line": 502, "start_column": 4, "end_line": 502, "end_column": 23 }, { "span": "def __iter__(self):", "start_line": 535, "start_column": 4, "end_line": 535, "end_column": 23 }, { "span": "def __iter__(self):", "start_line": 543, "start_column": 4, "end_line": 543, "end_column": 23 }, { "span": "def __iter__(self):", "start_line": 552, "start_column": 4, "end_line": 552, "end_column": 23 } ]

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[ { "content": " def from_FF_python(K1, a, K0):\n \"\"\"Convert ``ModularInteger(int)`` to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_FF_python", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 168 }, { "content": " def from_ZZ_python(K1, a, K0):\n \"\"\"Convert a Python ``int`` object to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_ZZ_python", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 172 }, { "content": " def from_QQ_python(K1, a, K0):\n \"\"\"Convert a Python ``Fraction`` object to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_QQ_python", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 176 }, { "content": " def from_FF_gmpy(K1, a, K0):\n \"\"\"Convert ``ModularInteger(mpz)`` to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_FF_gmpy", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 180 }, { "content": " def from_ZZ_gmpy(K1, a, K0):\n \"\"\"Convert a GMPY ``mpz`` object to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_ZZ_gmpy", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 184 }, { "content": " def from_QQ_gmpy(K1, a, K0):\n \"\"\"Convert a GMPY ``mpq`` object to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_QQ_gmpy", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 188 }, { "content": " def from_RealField(K1, a, K0):\n \"\"\"Convert a real element object to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_RealField", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 192 }, { "content": " def from_ComplexField(K1, a, K0):\n \"\"\"Convert a complex element to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_ComplexField", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 196 }, { "content": " def from_AlgebraicField(K1, a, K0):\n \"\"\"Convert an algebraic number to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_AlgebraicField", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 200 }, { "content": " def from_PolynomialRing(K1, a, K0):\n \"\"\"Convert a polynomial to ``dtype``. \"\"\"\n if a.is_ground:\n return K1.convert(a.LC, K0.dom)", "metadata": "root.Domain.from_PolynomialRing", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 204 }, { "content": " def from_FractionField(K1, a, K0):\n \"\"\"Convert a rational function to ``dtype``. \"\"\"\n return None", "metadata": "root.Domain.from_FractionField", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 209 }, { "content": " def from_ExpressionDomain(K1, a, K0):\n \"\"\"Convert a ``EX`` object to ``dtype``. \"\"\"\n return K1.from_sympy(a.ex)", "metadata": "root.Domain.from_ExpressionDomain", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 213 }, { "content": " def from_GlobalPolynomialRing(K1, a, K0):\n \"\"\"Convert a polynomial to ``dtype``. \"\"\"\n if a.degree() <= 0:\n return K1.convert(a.LC(), K0.dom)", "metadata": "root.Domain.from_GlobalPolynomialRing", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 217 }, { "content": " def from_GeneralizedPolynomialRing(K1, a, K0):\n return K1.from_FractionField(a, K0)", "metadata": "root.Domain.from_GeneralizedPolynomialRing", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 222 }, { "content": " def unify_with_symbols(K0, K1, symbols):\n if (K0.is_Composite and (set(K0.symbols) & set(symbols))) or (K1.is_Composite and (set(K1.symbols) & set(symbols))):\n raise UnificationFailed(\"can't unify %s with %s, given %s generators\" % (K0, K1, tuple(symbols)))\n\n return K0.unify(K1)", "metadata": "root.Domain.unify_with_symbols", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 225 }, { "content": " def unify(K0, K1, symbols=None):\n \"\"\"\n Construct a minimal domain that contains elements of ``K0`` and ``K1``.\n\n Known domains (from smallest to largest):\n\n - ``GF(p)``\n - ``ZZ``\n - ``QQ``\n - ``RR(prec, tol)``\n - ``CC(prec, tol)``\n - ``ALG(a, b, c)``\n - ``K[x, y, z]``\n - ``K(x, y, z)``\n - ``EX``\n\n \"\"\"\n if symbols is not None:\n return K0.unify_with_symbols(K1, symbols)\n\n if K0 == K1:\n return K0\n\n if K0.is_EX:\n return K0\n if K1.is_EX:\n return K1\n\n if K0.is_Composite or K1.is_Composite:\n K0_ground = K0.dom if K0.is_Composite else K0\n K1_ground = K1.dom if K1.is_Composite else K1\n\n K0_symbols = K0.symbols if K0.is_Composite else ()\n K1_symbols = K1.symbols if K1.is_Composite else ()\n\n domain = K0_ground.unify(K1_ground)\n symbols = _unify_gens(K0_symbols, K1_symbols)\n order = K0.order if K0.is_Composite else K1.order\n\n if ((K0.is_FractionField and K1.is_PolynomialRing or\n K1.is_FractionField and K0.is_PolynomialRing) and\n (not K0_ground.has_Field or not K1_ground.has_Field) and domain.has_Field):\n domain = domain.get_ring()\n\n if K0.is_Composite and (not K1.is_Composite or K0.is_FractionField or K1.is_PolynomialRing):\n cls = K0.__class__\n else:\n cls = K1.__class__\n\n return cls(domain, symbols, order)\n\n def mkinexact(cls, K0, K1):\n prec = max(K0.precision, K1.precision)\n tol = max(K0.tolerance, K1.tolerance)\n return cls(prec=prec, tol=tol)\n\n if K0.is_ComplexField and K1.is_ComplexField:\n return mkinexact(K0.__class__, K0, K1)\n if K0.is_ComplexField and K1.is_RealField:\n return mkinexact(K0.__class__, K0, K1)\n if K0.is_RealField and K1.is_ComplexField:\n return mkinexact(K1.__class__, K1, K0)\n if K0.is_RealField and K1.is_RealField:\n return mkinexact(K0.__class__, K0, K1)\n if K0.is_ComplexField or K0.is_RealField:\n return K0\n if K1.is_ComplexField or K1.is_RealField:\n return K1\n\n if K0.is_AlgebraicField and K1.is_AlgebraicField:\n return K0.__class__(K0.dom.unify(K1.dom), *_unify_gens(K0.orig_ext, K1.orig_ext))\n elif K0.is_AlgebraicField:\n return K0\n elif K1.is_AlgebraicField:\n return K1\n\n if K0.is_RationalField:\n return K0\n if K1.is_RationalField:\n return K1\n\n if K0.is_IntegerRing:\n return K0\n if K1.is_IntegerRing:\n return K1\n\n if K0.is_FiniteField and K1.is_FiniteField:\n return K0.__class__(max(K0.mod, K1.mod, key=default_sort_key))\n\n from sympy.polys.domains import EX\n return EX", "metadata": "root.Domain.unify", "header": "['class', 'Domain', '(', 'object', ')', ':', '___EOS___']", "index": 231 } ]

[ { "span": "def from_FF_python(K1, a, K0):", "start_line": 168, "start_column": 4, "end_line": 168, "end_column": 34 }, { "span": "def from_ZZ_python(K1, a, K0):", "start_line": 172, "start_column": 4, "end_line": 172, "end_column": 34 }, { "span": "def from_QQ_python(K1, a, K0):", "start_line": 176, "start_column": 4, "end_line": 176, "end_column": 34 }, { "span": "def from_FF_gmpy(K1, a, K0):", "start_line": 180, "start_column": 4, "end_line": 180, "end_column": 32 }, { "span": "def from_ZZ_gmpy(K1, a, K0):", "start_line": 184, "start_column": 4, "end_line": 184, "end_column": 32 }, { "span": "def from_QQ_gmpy(K1, a, K0):", "start_line": 188, "start_column": 4, "end_line": 188, "end_column": 32 }, { "span": "def from_RealField(K1, a, K0):", "start_line": 192, "start_column": 4, "end_line": 192, "end_column": 34 }, { "span": "def from_ComplexField(K1, a, K0):", "start_line": 196, "start_column": 4, "end_line": 196, "end_column": 37 }, { "span": "def from_AlgebraicField(K1, a, K0):", "start_line": 200, "start_column": 4, "end_line": 200, "end_column": 39 }, { "span": "def from_PolynomialRing(K1, a, K0):", "start_line": 204, "start_column": 4, "end_line": 204, "end_column": 39 }, { "span": "def from_FractionField(K1, a, K0):", "start_line": 209, "start_column": 4, "end_line": 209, "end_column": 38 }, { "span": "def from_ExpressionDomain(K1, a, K0):", "start_line": 213, "start_column": 4, "end_line": 213, "end_column": 41 }, { "span": "def from_GlobalPolynomialRing(K1, a, K0):", "start_line": 217, "start_column": 4, "end_line": 217, "end_column": 45 }, { "span": "def from_GeneralizedPolynomialRing(K1, a, K0):", "start_line": 222, "start_column": 4, "end_line": 222, "end_column": 50 }, { "span": "def unify_with_symbols(K0, K1, symbols):", "start_line": 225, "start_column": 4, "end_line": 225, "end_column": 44 }, { "span": "def unify(K0, K1, symbols=None):", "start_line": 231, "start_column": 4, "end_line": 231, "end_column": 36 } ]

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[ { "content": "import os\nimport pdb\nimport sys\nimport tempfile\nsys.path.append(\"/opt/tosca\")\nfrom translator.toscalib.tosca_template import ToscaTemplate\nimport pdb\n\nfrom core.models import User\nfrom services.cord.models import CordSubscriberRoot\n\nfrom xosresource import XOSResource\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class XOSCORDUser(XOSResource):\n provides = \"tosca.nodes.CORDUser\"\n\n\n\n\n\n\n\n\n", "metadata": "root.XOSCORDUser", "header": "['module', '___EOS___']", "index": 13 }, { "content": " def get_model_class_name(self):\n return \"CORDUser\"", "metadata": "root.XOSCORDUser.get_model_class_name", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 16 }, { "content": " def get_subscriber_root(self, throw_exception=True):\n sub_name = self.get_requirement(\"tosca.relationships.SubscriberDevice\", throw_exception=throw_exception)\n sub = self.get_xos_object(CordSubscriberRoot, name=sub_name, throw_exception=throw_exception)\n return sub", "metadata": "root.XOSCORDUser.get_subscriber_root", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 19 }, { "content": " def get_existing_objs(self):\n result = []\n sub = self.get_subscriber_root(throw_exception=False)\n if not sub:\n return []\n for user in sub.users:\n if user[\"name\"] == self.obj_name:\n result.append(user)\n return result", "metadata": "root.XOSCORDUser.get_existing_objs", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 24 }, { "content": " def get_xos_args(self):\n args = {\"name\": self.obj_name,\n \"level\": self.get_property(\"level\"),\n \"mac\": self.get_property(\"mac\")}\n return args", "metadata": "root.XOSCORDUser.get_xos_args", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 34 }, { "content": " def create(self):\n xos_args = self.get_xos_args()\n sub = self.get_subscriber_root()\n\n sub.create_user(**xos_args)\n sub.save()\n\n self.info(\"Created CORDUser %s for Subscriber %s\" % (self.obj_name, sub.name))", "metadata": "root.XOSCORDUser.create", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 41 }, { "content": " def update(self, obj):\n pass", "metadata": "root.XOSCORDUser.update", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 50 }, { "content": " def delete(self, obj):\n if (self.can_delete(obj)):\n self.info(\"destroying CORDUser %s\" % obj[\"name\"])\n sub = self.get_subscriber_root()\n sub.delete_user(obj[\"id\"])\n sub.save()", "metadata": "root.XOSCORDUser.delete", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 53 }, { "content": " def can_delete(self, obj):\n return True", "metadata": "root.XOSCORDUser.can_delete", "header": "['class', 'XOSCORDUser', '(', 'XOSResource', ')', ':', '___EOS___']", "index": 60 } ]

[ { "span": "import os", "start_line": 0, "start_column": 0, "end_line": 0, "end_column": 9 }, { "span": "import pdb", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 10 }, { "span": "import tempfile", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 15 }, { "span": "from translator.toscalib.tosca_template import ToscaTemplate", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 60 }, { "span": "import pdb", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 10 }, { "span": "from core.models import User", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 28 } ]

[]

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[ { "content": "#!/usr/bin/env python\nimport sys, os, fnmatch\nfrom subprocess import call\nfrom optparse import OptionParser\n\noption_parser = OptionParser(\n usage='''%prog storagePath configPath\n\nstoragePath the Path to the directory containing whisper files (CAN NOT BE A SUBDIR, use --subdir for that)\nconfigPath the path to your carbon config files\n''', version=\"%prog 0.1\")\n\noption_parser.add_option(\n '--doit', default=False, action='store_true',\n help=\"This is not a drill, lets do it\")\noption_parser.add_option(\n '-q', '--quiet', default=False, action='store_true',\n help=\"Display extra debugging info\")\noption_parser.add_option(\n '--subdir', default=None,\n type='string', help=\"only process a subdir of whisper files\")\noption_parser.add_option(\n '--carbonlib', default=None,\n type='string', help=\"folder where the carbon lib files are if its not in your path already\")\noption_parser.add_option(\n '--whisperlib', default=None,\n type='string', help=\"folder where the whisper lib files are if its not in your path already\")\noption_parser.add_option(\n '--confirm', default=False, action='store_true',\n help=\"ask for comfirmation prior to resizing a whisper file\")\noption_parser.add_option(\n '-x', '--extra_args', default='',\n type='string', help=\"pass any additional arguments to the whisper-resize.py script\")\n\n(options, args) = option_parser.parse_args()\n\nif len(args) < 2:\n option_parser.print_help()\n sys.exit(1)\n\nstoragePath = args[0]\nconfigPath = args[1]\n\n#check to see if we are processing a subfolder\n# we need to have a separate config option for this since\n# otherwise the metric test thinks the metric is at the root\n# of the storage path and can match schemas incorrectly\nif options.subdir is None:\n processPath = args[0]\nelse:\n processPath = options.subdir\n\n# Injecting the Whisper Lib Path if needed\nif options.whisperlib is not None:\n sys.path.insert(0, options.whisperlib)\n\ntry:\n import whisper\nexcept ImportError:\n raise SystemExit('[ERROR] Can\\'t find the whisper module, try using --whisperlib to explicitly include the path')\n\n# Injecting the Carbon Lib Path if needed\nif options.carbonlib is not None:\n sys.path.insert(0, options.carbonlib)\n\ntry:\n from carbon import conf\n from carbon.conf import settings\nexcept ImportError:\n raise SystemExit('[ERROR] Can\\'t find the carbon module, try using --carbonlib to explicitly include the path')\n\n#carbon.conf not seeing the config files so give it a nudge\nsettings.CONF_DIR = configPath\nsettings.LOCAL_DATA_DIR = storagePath\n\n# import these once we have the settings figured out\nfrom carbon.storage import loadStorageSchemas, loadAggregationSchemas\n\n# Load the Defined Schemas from our config files\nschemas = loadStorageSchemas()\nagg_schemas = loadAggregationSchemas()\n\n# check to see if a metric needs to be resized based on the current config\n\n\n\nfor root, _, files in os.walk(processPath):\n # we only want to deal with non-hidden whisper files\n for f in fnmatch.filter(files, '*.wsp'):\n fullpath = os.path.join(root, f)\n processMetric(fullpath, schemas, agg_schemas)\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def processMetric(fullPath, schemas, agg_schemas):\n \"\"\"\n method to process a given metric, and resize it if necessary\n\n Parameters:\n fullPath - full path to the metric whisper file\n schemas - carbon storage schemas loaded from config\n agg_schemas - carbon storage aggregation schemas load from confg\n\n \"\"\"\n schema_config_args = ''\n schema_file_args = ''\n rebuild = False\n messages = ''\n\n # get archive info from whisper file\n info = whisper.info(fullpath)\n\n # get graphite metric name from fullPath\n metric = getMetricFromPath(fullpath)\n\n # loop the carbon-storage schemas\n for schema in schemas:\n if schema.matches(metric):\n # returns secondsPerPoint and points for this schema in tuple format\n archive_config = [archive.getTuple() for archive in schema.archives]\n break\n\n # loop through the carbon-aggregation schemas\n for agg_schema in agg_schemas:\n if agg_schema.matches(metric):\n xFilesFactor, aggregationMethod = agg_schema.archives\n break\n\n # loop through the bucket tuples and convert to string format for resizing\n for retention in archive_config:\n current_schema = '%s:%s ' % (retention[0], retention[1])\n schema_config_args += current_schema\n\n # loop through the current files bucket sizes and convert to string format to compare for resizing\n for fileRetention in info['archives']:\n current_schema = '%s:%s ' % (fileRetention['secondsPerPoint'], fileRetention['points'])\n schema_file_args += current_schema\n\n # check to see if the current and configured schemas are the same or rebuild\n if (schema_config_args != schema_file_args):\n rebuild = True\n messages += 'updating Retentions from: %s to: %s \\n' % (schema_file_args, schema_config_args)\n\n # only care about the first two decimals in the comparison since there is floaty stuff going on.\n info_xFilesFactor = \"{0:.2f}\".format(info['xFilesFactor'])\n str_xFilesFactor = \"{0:.2f}\".format(xFilesFactor)\n\n # check to see if the current and configured aggregationMethods are the same\n if (str_xFilesFactor != info_xFilesFactor):\n rebuild = True\n messages += '%s xFilesFactor differs real: %s should be: %s \\n' % (metric, info_xFilesFactor, str_xFilesFactor)\n if (aggregationMethod != info['aggregationMethod']):\n rebuild = True\n messages += '%s aggregation schema differs real: %s should be: %s \\n' % (metric, info['aggregationMethod'], aggregationMethod)\n\n # check to see if the current and configured xFilesFactor are the same\n if (xFilesFactor != info['xFilesFactor']):\n rebuild = True\n messages += '%s xFilesFactor differs real: %s should be: %s \\n' % (metric, info['xFilesFactor'], xFilesFactor)\n\n # if we need to rebuild, lets do it.\n if (rebuild == True):\n cmd = 'whisper-resize.py \"%s\" %s --xFilesFactor=%s --aggregationMethod=%s %s' % (fullPath, options.extra_args, xFilesFactor, aggregationMethod, schema_config_args)\n if (options.quiet != True or options.confirm == True):\n print(messages)\n print(cmd)\n\n if (options.confirm == True):\n options.doit = confirm(\"Would you like to run this command? [y/n]: \")\n if (options.doit == False):\n print(\"Skipping command \\n\")\n\n if (options.doit == True):\n exitcode = call(cmd, shell=True)\n # if the command failed lets bail so we can take a look before proceeding\n if (exitcode > 0):\n print('Error running: %s' % (cmd))\n sys.exit(1)", "metadata": "root.processMetric", "header": "['module', '___EOS___']", "index": 83 }, { "content": "def getMetricFromPath(filePath):\n \"\"\"\n this method takes the full file path of a whisper file an converts it to a gaphite metric name\n\n Parameters:\n filePath - full file path to a whisper file\n\n Returns a string representing the metric name\n \"\"\"\n # sanitize directory since we may get a trailing slash or not, and if we don't it creates a leading .\n data_dir = os.path.normpath(settings.LOCAL_DATA_DIR) + os.sep\n\n # pull the data dir off and convert to the graphite metric name\n metric_name = filePath.replace(data_dir, '')\n metric_name = metric_name.replace('.wsp', '')\n metric_name = metric_name.replace('/', '.')\n return metric_name", "metadata": "root.getMetricFromPath", "header": "['module', '___EOS___']", "index": 168 }, { "content": "def confirm(question, error_response='Valid options : yes or no'):\n \"\"\"\n ask the user if they would like to perform the action\n\n Parameters:\n question - the question you would like to ask the user to confirm.\n error_response - the message to display if an invalid option is given.\n \"\"\"\n while True:\n answer = raw_input(question).lower()\n if answer in ('y', 'yes'):\n return True\n if answer in ('n', 'no' ):\n return False\n print(error_response)", "metadata": "root.confirm", "header": "['module', '___EOS___']", "index": 186 } ]

[ { "span": "from carbon import conf", "start_line": 66, "start_column": 4, "end_line": 66, "end_column": 27 } ]

[]

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[ { "content": "\"\"\"\nPlayground for landmark-based experiments\n\"\"\"\nfrom __future__ import print_function\nimport numpy as np\nfrom sklearn.pipeline import Pipeline\nfrom sklearn.cross_validation import train_test_split\nfrom sklearn.grid_search import GridSearchCV\nfrom sklearn.metrics import classification_report\nfrom sklearn.neural_network import BernoulliRBM\nfrom sklearn.linear_model import LogisticRegression\nfrom sklearn.naive_bayes import MultinomialNB\nfrom sklearn.svm import SVC\n\nfrom masque import datasets\nfrom masque.transform import PatchTransformer\nfrom masque.rbm import GaussianBernoulliRBM\nfrom masque.playground.runners import plain_classify, pretrain_classify\n\n\n\nrbm_svc = {\n 'pretrain_model' : BernoulliRBM(n_components=1024, verbose=True),\n 'model' : SVC(kernel='linear', verbose=True),\n 'pretrain_data' : lambda: _norm(*datasets.ck_lm_series()),\n 'data' : lambda: _norm(*datasets.ck_lm_series(labeled_only=True)),\n}\n\n# TODO: sample\ndbn_svc = {\n 'pretrain_model' : Pipeline([\n ('rbm0', BernoulliRBM(n_components=60, verbose=True)),\n ('rbm1', BernoulliRBM(n_components=80, verbose=True)),\n ('rbm2', BernoulliRBM(n_components=32, verbose=True)),\n ]),\n 'model' : SVC(kernel='linear', verbose=True),\n 'pretrain_data' : lambda: datasets.cohn_kanade_shapes(),\n 'data' : lambda: datasets.cohn_kanade_shapes(labeled_only=True),\n}\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def _norm(X, y):\n \"\"\"Scales data to [0..1] interval\"\"\"\n X = X.astype(np.float32) / (X.max() - X.min())\n return X, y", "metadata": "root._norm", "header": "['module', '___EOS___']", "index": 20 }, { "content": "def grid_search_svc(X, y):\n X_train, X_test, y_train, y_test = train_test_split(\n X, y, test_size=0.1, random_state=0)\n tuned_parameters = [{'kernel': ['rbf'], 'gamma': [1e-3, 1e-4],\n 'C': [0.025, 0.1, 1, 10, 100, 1000]},\n {'kernel': ['linear'],\n 'C': [0.025, 0.1, 1, 10, 100, 1000]}]\n scorings = ['accuracy']\n for scoring in scorings:\n model = GridSearchCV(SVC(), tuned_parameters, cv=10, scoring=scoring)\n model.fit(X_test, y_test)\n print(\"Best parameters set found on development set:\")\n print()\n print(model.best_estimator_)\n print()\n print(\"Grid scores on development set:\")\n print()\n for params, mean_score, scores in model.grid_scores_:\n print(\"%0.3f (+/-%0.03f) for %r\"\n % (mean_score, scores.std() / 2, params))\n print()\n\n print(\"Detailed classification report:\")\n print()\n print(\"The model is trained on the full development set.\")\n print(\"The scores are computed on the full evaluation set.\")\n print()\n y_true, y_pred = y_test, model.predict(X_test)\n print(classification_report(y_true, y_pred))\n print()", "metadata": "root.grid_search_svc", "header": "['module', '___EOS___']", "index": 45 } ]

[ { "span": "from sklearn.linear_model import LogisticRegression", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 51 }, { "span": "from sklearn.naive_bayes import MultinomialNB", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 45 }, { "span": "from masque.transform import PatchTransformer", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 45 }, { "span": "from masque.rbm import GaussianBernoulliRBM", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 43 }, { "span": "from masque.playground.runners import plain_classify, pretrain_classify", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 71 } ]

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[ { "content": "import datetime\n\nfrom django.shortcuts import get_object_or_404, redirect\nfrom django.core.exceptions import PermissionDenied\nfrom django.contrib import messages\nfrom django.contrib.auth.decorators import login_required\nfrom django.contrib.auth.models import User\nfrom django.http import HttpResponse\nfrom django.utils.translation import ugettext as _\nfrom django.utils.decorators import method_decorator\nfrom django.utils.simplejson import dumps\n\nfrom projector.models import Task\nfrom projector.forms import TaskForm, TaskEditForm\nfrom projector.filters import TaskFilter\nfrom projector.views.project import ProjectView\n\nfrom richtemplates.shortcuts import get_json_response\n\nlogin_required_m = method_decorator(login_required)\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TaskListView(ProjectView):\n \"\"\"\n Task for project listing view.\n \"\"\"\n\n template_name='projector/project/task/list.html'\n perms_private = ['view_project', 'can_view_tasks']\n", "metadata": "root.TaskListView", "header": "['module', '___EOS___']", "index": 21 }, { "content": " def response(self, request, username, project_slug):\n task_list = Task.objects.filter(project__id=self.project.id)\\\n .select_related('priority', 'status', 'author', 'project')\n filters = TaskFilter(self.request.GET, queryset=task_list,\n project=self.project)\n if self.request.GET and 'id' in self.request.GET and \\\n self.request.GET['id'] and filters.qs.count() == 1:\n task = filters.qs[0]\n messages.info(self.request, _(\"One task matched - redirecting...\"))\n return redirect(task.get_absolute_url())\n self.context['filters'] = filters\n return self.context", "metadata": "root.TaskListView.response", "header": "['class', 'TaskListView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 29 }, { "content": "class TaskListDataView(ProjectView):\n \"\"\"\n Tasks data for charts.\n \"\"\"\n", "metadata": "root.TaskListDataView", "header": "['module', '___EOS___']", "index": 43 }, { "content": " def response(self, request, username, project_slug):\n import random\n import pyofc2\n t = pyofc2.title(text=_(\"Tasks\"))\n b1 = pyofc2.bar()\n b1.values = range(10)\n b2 = pyofc2.bar()\n b2.values = [random.randint(0,9) for i in range(9)]\n b2.colour = '#56acde'\n chart = pyofc2.open_flash_chart()\n chart.title = t\n chart.add_element(b1)\n chart.add_element(b2)\n return HttpResponse(chart.render())", "metadata": "root.TaskListDataView.response", "header": "['class', 'TaskListDataView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 48 }, { "content": "class TaskDetailView(ProjectView):\n \"\"\"\n Task detail view.\n Users may update task here.\n \"\"\"\n\n template_name = 'projector/project/task/detail.html'\n perms_private = ['view_project', 'can_view_tasks']\n perms_POST = ['can_change_task']\n", "metadata": "root.TaskDetailView", "header": "['module', '___EOS___']", "index": 64 }, { "content": " def response(self, request, username, project_slug, task_id):\n task = get_object_or_404(\n Task.objects.select_related('type', 'priority', 'status', 'owner',\n 'author', 'editor', 'milestone', 'component', 'project'),\n id = task_id,\n project__author__username = username,\n project__slug = project_slug)\n\n self.context['task'] = task\n self.context['is_watched'] = task.is_watched(request.user)\n self.context['now'] = datetime.datetime.now()\n\n return self.context", "metadata": "root.TaskDetailView.response", "header": "['class', 'TaskDetailView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 74 }, { "content": "class TaskCreateView(ProjectView):\n \"\"\"\n New Task creation view.\n \"\"\"\n\n template_name = 'projector/project/task/create.html'\n perms = ProjectView.perms + ['can_add_task']\n", "metadata": "root.TaskCreateView", "header": "['module', '___EOS___']", "index": 88 }, { "content": " @login_required_m\n def response(self, request, username, project_slug):\n initial = {\n 'owner': request.user.username, # form's owner is UserByNameField\n }\n instance = Task.objects.get_for_project(self.project)\n instance.author = request.user\n instance.author_ip = request.META.get('REMOTE_ADDR', '')\n instance.editor = instance.author\n instance.editor_ip = instance.author_ip\n\n form = TaskForm(request.POST or None, initial=initial, instance=instance)\n\n if request.method == 'POST':\n if form.is_valid():\n task = form.save(\n editor = request.user,\n editor_ip = request.META.get('REMOTE_ADDR', ''),\n )\n task.create_revision()\n messages.success(request, _(\"Task created succesfully.\"))\n task.notify()\n return redirect(task.get_absolute_url())\n\n self.context['form'] = form\n\n return self.context", "metadata": "root.TaskCreateView.response", "header": "['class', 'TaskCreateView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 96 }, { "content": "class TaskEditView(ProjectView):\n \"\"\"\n Edit Task meta information. task_detail edits the rest.\n \"\"\"\n\n template_name = 'projector/project/task/create.html'\n perms = ['can_change_task']\n", "metadata": "root.TaskEditView", "header": "['module', '___EOS___']", "index": 124 }, { "content": " @login_required_m\n def response(self, request, username, project_slug, task_id):\n task = get_object_or_404(Task, id=task_id,\n project__author__username=username, project__slug=project_slug)\n\n if request.method == 'POST':\n form = TaskEditForm(request.POST, instance=task)\n if form.is_valid():\n if request.user.is_authenticated():\n editor = request.user\n else:\n editor = User.get_anonymous() # available from guardian\n task = form.save(\n editor=editor,\n editor_ip=request.META.get('REMOTE_ADDR', ''),\n )\n task.create_revision()\n messages.success(request, _(\"Task updated successfully.\"))\n task.notify()\n return redirect(task.get_absolute_url())\n else:\n form = TaskEditForm(instance=task, initial={\n 'owner': task.owner and task.owner.username or None,\n })\n\n self.context['form'] = form\n\n return self.context", "metadata": "root.TaskEditView.response", "header": "['class', 'TaskEditView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 132 }, { "content": "class TaskWatchView(ProjectView):\n \"\"\"\n Makes request's user watching this task.\n \"\"\"\n\n perms_private = ['view_project', 'can_view_tasks']\n", "metadata": "root.TaskWatchView", "header": "['module', '___EOS___']", "index": 162 }, { "content": " def response(self, request, username, project_slug, task_id):\n task = get_object_or_404(Task, id=task_id,\n project__author__username=username, project__slug=project_slug)\n if request.method == 'POST':\n task.watch(request.user)\n if request.is_ajax():\n return get_json_response()\n return redirect(task.get_absolute_url())\n else:\n # Only POST methods are allowed here\n raise PermissionDenied()", "metadata": "root.TaskWatchView.response", "header": "['class', 'TaskWatchView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 169 }, { "content": "class TaskUnwatchView(ProjectView):\n \"\"\"\n Makes request's user watching this task.\n \"\"\"\n\n perms_private = ['view_project', 'can_view_tasks']\n", "metadata": "root.TaskUnwatchView", "header": "['module', '___EOS___']", "index": 181 }, { "content": " def response(self, request, username, project_slug, task_id):\n task = get_object_or_404(Task, id=task_id,\n project__author__username=username, project__slug=project_slug)\n if request.method == 'POST':\n if request.is_ajax():\n return get_json_response()\n task.unwatch(request.user)\n return redirect(task.get_absolute_url())\n else:\n # Only POST methods are allowed here\n raise PermissionDenied()", "metadata": "root.TaskUnwatchView.response", "header": "['class', 'TaskUnwatchView', '(', 'ProjectView', ')', ':', '___EOS___']", "index": 188 } ]

[ { "span": "from django.utils.simplejson import dumps", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 41 } ]

[]

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[ { "content": "import datetime\nimport email\nimport mimetypes\nimport urlparse\n\ntry:\n from cStringIO import StringIO\nexcept ImportError:\n from StringIO import StringIO\n\nfrom django.conf import settings\nfrom django.core.exceptions import ImproperlyConfigured\nfrom django.core.files.base import File\nfrom django.core.files.storage import Storage\nfrom django.core.files.uploadedfile import UploadedFile\nfrom django.core.files.uploadhandler import FileUploadHandler, \\\n StopFutureHandlers\nfrom django.http import HttpResponse\nfrom django.utils.encoding import smart_str, force_unicode, filepath_to_uri\n\ntry:\n import cloudstorage\nexcept ImportError:\n cloudstorage = None\n\nfrom google.appengine.api import files\nfrom google.appengine.api.images import get_serving_url, NotImageError, \\\n TransformationError, BlobKeyRequiredError\nfrom google.appengine.ext.blobstore import BlobInfo, BlobKey, delete, \\\n create_upload_url, BLOB_KEY_HEADER, BLOB_RANGE_HEADER, BlobReader, \\\n create_gs_key, CLOUD_STORAGE_OBJECT_HEADER\n\nAPPENGINE_STORAGE_SERVICE_KEY = 'APPENGINE_STORAGE_SERVICE'\nCLOUD_STORAGE_DEFAULT_BUCKET_KEY = 'CLOUD_STORAGE_DEFAULT_BUCKET'\n\nBLOBSTORE_SERVICE = 'blobstore'\nCLOUD_STORAGE_SERVICE = 'gs'\n\n\n\n\n\n\n\n\n\n\n\n\n\n# Backwards compatibility\nBlobstoreStorage = AppEngineStorage\nDevBlobstoreStorage = AppEngineStorage\nBlobstoreFile = AppEngineFile\nBlobstoreFileUploadHandler = AppEngineFileUploadHandler\nBlobstoreUploadedFile = AppEngineUploadedFile\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def prepare_upload(request, url, storage_service=None, cloud_storage_bucket=None, **kwargs):\n if not storage_service:\n storage_service = getattr(settings, APPENGINE_STORAGE_SERVICE_KEY, BLOBSTORE_SERVICE)\n\n upload_kwargs = {}\n if storage_service == 'gs':\n if not cloud_storage_bucket:\n cloud_storage_bucket = getattr(settings, CLOUD_STORAGE_DEFAULT_BUCKET_KEY, None)\n if not cloud_storage_bucket:\n raise ImproperlyConfigured(\"'cloud_storage_bucket' keyword argument or \"\n \"settings.CLOUD_STORAGE_DEFAULT_BUCKET must be set when using Google Cloud Storage.\")\n upload_kwargs['gs_bucket_name'] = cloud_storage_bucket\n return create_upload_url(url, **upload_kwargs), {}", "metadata": "root.prepare_upload", "header": "['module', '___EOS___']", "index": 38 }, { "content": "def serve_file(request, file, save_as, content_type, **kwargs):\n if hasattr(file, 'file') and hasattr(file.file, 'blobstore_info'):\n blobkey = file.file.blobstore_info.key()\n elif hasattr(file, 'blobstore_info'):\n blobkey = file.blobstore_info.key()\n else:\n raise ValueError(\"The provided file can't be served via the \"\n \"App Engine Blobstore or Google Cloud Storage.\")\n response = HttpResponse(content_type=content_type)\n response[BLOB_KEY_HEADER] = str(blobkey)\n response['Accept-Ranges'] = 'bytes'\n http_range = request.META.get('HTTP_RANGE')\n if http_range is not None:\n response[BLOB_RANGE_HEADER] = http_range\n if save_as:\n response['Content-Disposition'] = smart_str(\n u'attachment; filename=%s' % save_as)\n if file.size is not None:\n response['Content-Length'] = file.size\n return response", "metadata": "root.serve_file", "header": "['module', '___EOS___']", "index": 53 }, { "content": "class AppEngineStorage(Storage):\n \"\"\"\n Google App Engine storage backend.\n Supports Blobstore and Cloud Storage.\n \"\"\"\n\n\n\n\n\n\n\n\n\n", "metadata": "root.AppEngineStorage", "header": "['module', '___EOS___']", "index": 75 }, { "content": " def __init__(self, storage_service=None, cloud_storage_bucket=None):\n super(AppEngineStorage, self).__init__()\n if not storage_service:\n storage_service = getattr(settings, APPENGINE_STORAGE_SERVICE_KEY, BLOBSTORE_SERVICE)\n if not cloud_storage_bucket:\n cloud_storage_bucket = getattr(settings, CLOUD_STORAGE_DEFAULT_BUCKET_KEY, None)\n\n if storage_service not in (BLOBSTORE_SERVICE, CLOUD_STORAGE_SERVICE):\n raise ImproperlyConfigured(\"APPENGINE_STORAGE_SERVICE must be either \"\n \"'gs' or 'blobstore', not %s.\" % storage_service)\n if storage_service == CLOUD_STORAGE_SERVICE and not cloud_storage_bucket:\n raise ImproperlyConfigured(\"CLOUD_STORAGE_DEFAULT_BUCKET must be set \"\n \"when using Google Cloud Storage.\")\n\n self.storage_service = storage_service\n self.cloud_storage_bucket = cloud_storage_bucket", "metadata": "root.AppEngineStorage.__init__", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 80 }, { "content": " def _open(self, name, mode='rb'):\n return AppEngineFile(name, mode, self)", "metadata": "root.AppEngineStorage._open", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 97 }, { "content": " def _save(self, name, content):\n name = name.replace('\\\\', '/')\n\n if isinstance(content, (AppEngineFile, AppEngineUploadedFile)):\n data = content.blobstore_info\n elif hasattr(content, 'file') and \\\n isinstance(content.file, (AppEngineFile, AppEngineUploadedFile)):\n data = content.file.blobstore_info\n elif isinstance(content, File):\n guessed_type = mimetypes.guess_type(name)[0]\n\n if self.storage_service == CLOUD_STORAGE_SERVICE:\n assert cloudstorage, 'cloudstorage module is not available.'\n\n file_name = '/%s/%s' % (self.cloud_storage_bucket, name)\n\n with cloudstorage.open(file_name, 'w', guessed_type or 'application/octet-stream') as f:\n for chunk in content.chunks():\n f.write(chunk)\n\n data = self._get_info('/gs' + file_name)\n else:\n # TODO deprecated\n\n file_name = files.blobstore.create(mime_type=guessed_type or 'application/octet-stream',\n _blobinfo_uploaded_filename=name)\n\n with files.open(file_name, 'a') as f:\n for chunk in content.chunks():\n f.write(chunk)\n\n files.finalize(file_name)\n\n data = files.blobstore.get_blob_key(file_name)\n else:\n raise ValueError(\"The App Engine storage backend only supports \"\n \"AppEngineFile instances or File instances.\")\n\n if isinstance(data, CloudStorageInfo):\n return '/gs' + data.fullname\n\n if isinstance(data, BlobInfo):\n data = data.key()\n\n if isinstance(data, BlobKey):\n return '%s/%s' % (data, name.lstrip('/'))\n\n raise ValueError(\"Unknown type returned from saving: %s\" % type(data))", "metadata": "root.AppEngineStorage._save", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 100 }, { "content": " def delete(self, name):\n self._get_info(name).delete()", "metadata": "root.AppEngineStorage.delete", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 149 }, { "content": " def exists(self, name):\n info = self._get_info(name)\n return info is not None and (not hasattr(info, 'exists') or info.exists())", "metadata": "root.AppEngineStorage.exists", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 152 }, { "content": " def size(self, name):\n return self._get_info(name).size", "metadata": "root.AppEngineStorage.size", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 156 }, { "content": " def url(self, name):\n try:\n info = self._get_info(name)\n if not info:\n raise BlobKeyRequiredError('No blob info found for %s.' % name)\n return get_serving_url(info.key())\n except (NotImageError, TransformationError):\n return None\n except BlobKeyRequiredError:\n if settings.DEBUG:\n return urlparse.urljoin(settings.MEDIA_URL, filepath_to_uri(name))\n else:\n raise", "metadata": "root.AppEngineStorage.url", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 159 }, { "content": " def created_time(self, name):\n return self._get_info(name).creation", "metadata": "root.AppEngineStorage.created_time", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 173 }, { "content": " def get_valid_name(self, name):\n return force_unicode(name).strip().replace('\\\\', '/')", "metadata": "root.AppEngineStorage.get_valid_name", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 176 }, { "content": " def get_available_name(self, name):\n return name.replace('\\\\', '/')", "metadata": "root.AppEngineStorage.get_available_name", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 179 }, { "content": " def _get_info(self, name):\n if name.startswith('/gs/'):\n assert cloudstorage, 'cloudstorage module is not available.'\n return CloudStorageInfo(name)\n else:\n key = BlobKey(name.split('/', 1)[0])\n return BlobInfo.get(key)", "metadata": "root.AppEngineStorage._get_info", "header": "['class', 'AppEngineStorage', '(', 'Storage', ')', ':', '___EOS___']", "index": 182 }, { "content": "class CloudStorageInfo(object):\n\n\n\n\n\n", "metadata": "root.CloudStorageInfo", "header": "['module', '___EOS___']", "index": 191 }, { "content": " def __init__(self, name):\n self.fullname = name[3:]\n self.filename = self.fullname.split('/', 2)[2]", "metadata": "root.CloudStorageInfo.__init__", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 192 }, { "content": " def delete(self):\n cloudstorage.delete(self.fullname)", "metadata": "root.CloudStorageInfo.delete", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 196 }, { "content": " def exists(self):\n try:\n cloudstorage.stat(self.fullname)\n return True\n except cloudstorage.NotFoundError:\n return False", "metadata": "root.CloudStorageInfo.exists", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 199 }, { "content": " def key(self):\n return create_gs_key('/gs' + self.fullname)", "metadata": "root.CloudStorageInfo.key", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 206 }, { "content": " def open(self):\n return cloudstorage.open(self.fullname, 'r')", "metadata": "root.CloudStorageInfo.open", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 209 }, { "content": " @property\n def creation(self):\n return datetime.datetime.fromtimestamp(cloudstorage.stat(self.fullname).st_ctime)", "metadata": "root.CloudStorageInfo.creation", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 212 }, { "content": " @property\n def size(self):\n return cloudstorage.stat(self.fullname).st_size", "metadata": "root.CloudStorageInfo.size", "header": "['class', 'CloudStorageInfo', '(', 'object', ')', ':', '___EOS___']", "index": 216 }, { "content": "class AppEngineFile(File):\n\n\n", "metadata": "root.AppEngineFile", "header": "['module', '___EOS___']", "index": 221 }, { "content": " def __init__(self, name, mode, storage):\n self.name = name\n self._storage = storage\n self._mode = mode\n self.blobstore_info = storage._get_info(name)", "metadata": "root.AppEngineFile.__init__", "header": "['class', 'AppEngineFile', '(', 'File', ')', ':', '___EOS___']", "index": 222 }, { "content": " @property\n def size(self):\n return self.blobstore_info.size", "metadata": "root.AppEngineFile.size", "header": "['class', 'AppEngineFile', '(', 'File', ')', ':', '___EOS___']", "index": 228 }, { "content": " def write(self, content):\n raise NotImplementedError()", "metadata": "root.AppEngineFile.write", "header": "['class', 'AppEngineFile', '(', 'File', ')', ':', '___EOS___']", "index": 232 }, { "content": " @property\n def file(self):\n if not hasattr(self, '_file'):\n self._file = self.blobstore_info.open()\n return self._file", "metadata": "root.AppEngineFile.file", "header": "['class', 'AppEngineFile', '(', 'File', ')', ':', '___EOS___']", "index": 235 }, { "content": "class AppEngineFileUploadHandler(FileUploadHandler):\n \"\"\"\n File upload handler for Google App Engine. Supports both\n Blobstore and Google Cloud Storage\n \"\"\"\n\n\n", "metadata": "root.AppEngineFileUploadHandler", "header": "['module', '___EOS___']", "index": 241 }, { "content": " def new_file(self, *args, **kwargs):\n super(AppEngineFileUploadHandler, self).new_file(*args, **kwargs)\n blobkey = self.content_type_extra.get('blob-key')\n self.activated = blobkey is not None\n if self.activated:\n self.blobkey = BlobKey(blobkey)\n self.filename = kwargs.get('file_name', None)\n self.file = StringIO()\n raise StopFutureHandlers()", "metadata": "root.AppEngineFileUploadHandler.new_file", "header": "['class', 'AppEngineFileUploadHandler', '(', 'FileUploadHandler', ')', ':', '___EOS___']", "index": 247 }, { "content": " def receive_data_chunk(self, raw_data, start):\n \"\"\"\n Add the data to the StringIO file.\n \"\"\"\n if self.activated:\n self.file.write(raw_data)\n else:\n return raw_data", "metadata": "root.AppEngineFileUploadHandler.receive_data_chunk", "header": "['class', 'AppEngineFileUploadHandler', '(', 'FileUploadHandler', ')', ':', '___EOS___']", "index": 257 }, { "content": " def file_complete(self, file_size):\n \"\"\"\n Return a file object if we're activated.\n \"\"\"\n if not self.activated:\n return\n\n self.file.seek(0)\n upload_content = email.message_from_file(self.file)\n\n def get_value(dict, name):\n value = dict.get(name, None)\n if value is None:\n raise Exception('Missing field %s.' % (field_name, name))\n return value\n\n content_type = get_value(upload_content, 'content-type')\n size = get_value(upload_content, 'content-length')\n gs_object_name = upload_content.get(CLOUD_STORAGE_OBJECT_HEADER, None)\n\n kwargs = {\n 'blob_key': self.blobkey,\n 'name': self.file_name,\n 'content_type': content_type,\n 'size': int(size),\n 'charset': self.charset,\n }\n\n return AppEngineUploadedFile(**kwargs)", "metadata": "root.AppEngineFileUploadHandler.file_complete", "header": "['class', 'AppEngineFileUploadHandler', '(', 'FileUploadHandler', ')', ':', '___EOS___']", "index": 266 }, { "content": "class AppEngineUploadedFile(UploadedFile):\n \"\"\"\n A file uploaded via App Engine's upload mechanism.\n \"\"\"\n\n\n\n", "metadata": "root.AppEngineUploadedFile", "header": "['module', '___EOS___']", "index": 297 }, { "content": " def __init__(self, **kwargs):\n gs_object_name = kwargs.pop('gs_object_name', None)\n blob_key = kwargs.pop('blob_key', None)\n if gs_object_name:\n self.blobstore_info = CloudStorageInfo(gs_object_name)\n elif blob_key:\n self.blobstore_info = BlobInfo(blob_key)\n else:\n raise ValueError('A gs_object_name or blob_key is required.')\n\n super(AppEngineUploadedFile, self).__init__(self.blobstore_info.open(), **kwargs)", "metadata": "root.AppEngineUploadedFile.__init__", "header": "['class', 'AppEngineUploadedFile', '(', 'UploadedFile', ')', ':', '___EOS___']", "index": 302 }, { "content": " def open(self, mode=None):\n pass", "metadata": "root.AppEngineUploadedFile.open", "header": "['class', 'AppEngineUploadedFile', '(', 'UploadedFile', ')', ':', '___EOS___']", "index": 314 }, { "content": " def chunks(self, chunk_size=1024 * 128):\n self.file.seek(0)\n while True:\n content = self.read(chunk_size)\n if not content:\n break\n yield content", "metadata": "root.AppEngineUploadedFile.chunks", "header": "['class', 'AppEngineUploadedFile', '(', 'UploadedFile', ')', ':', '___EOS___']", "index": 317 }, { "content": " def multiple_chunks(self, chunk_size=1024 * 128):\n return True", "metadata": "root.AppEngineUploadedFile.multiple_chunks", "header": "['class', 'AppEngineUploadedFile', '(', 'UploadedFile', ')', ':', '___EOS___']", "index": 325 } ]

[ { "span": "from google.appengine.ext.blobstore import BlobInfo, BlobKey, delete, \\\n create_upload_url, BLOB_KEY_HEADER, BLOB_RANGE_HEADER, BlobReader, \\\n create_gs_key, CLOUD_STORAGE_OBJECT_HEADER", "start_line": 28, "start_column": 0, "end_line": 30, "end_column": 46 } ]

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[ { "content": " def getWordpress(self) :\n \"\"\"\n get wordpress site using a dork the attacker\n may do a password list attack (i did a tool for that purpose check my pastebin) \n or scan for common vulnerabilities using wpscan for example (i did a simple tool \n for multi scanning using wpscan)\n \"\"\"\n lista = []\n page = 1\n while page <= 101:\n try:\n bing = \"http://www.bing.com/search?q=ip%3A\" + self.serverip + \"+?page_id=&count=50&first=\" + str(page)\n openbing = urllib2.urlopen(bing)\n readbing = openbing.read()\n findwebs = re.findall('<h2><a href=\"(.*?)\"', readbing)\n for i in range(len(findwebs)):\n wpnoclean = findwebs[i]\n findwp = re.findall('(.*?)\\?page_id=', wpnoclean)\n lista.extend(findwp)\n page += 50\n except:\n pass\n lista = unique(lista)\n clearScr()\n print '[*] Found ', len(lista), ' Wordpress Website\\n'\n for site in lista :\n print site", "metadata": "root.TNscan.getWordpress", "header": "['class', 'TNscan', ':', '#TNscan Function menu', '___EOS___']", "index": 534 }, { "content": " def getUsers(self) :\n \"\"\"\n get server users using a method found by \n iranian hackers i think, the attacker may\n do a bruteforce attack on CPanel, ssh, ftp or \n even mysql if it supports remote login\n (you can use medusa or hydra)\n \"\"\"\n clearScr()\n print \"[~] Grabbing Users\"\n userslist = []\n for site1 in self.sites :\n try:\n site = site1\n site = site.replace('http://www.', '')\n site = site.replace('http://', '')\n site = site.replace('.', '')\n if '-' in site:\n site = site.replace('-', '')\n site = site.replace('/', '')\n while len(site) > 2:\n resp = urllib2.urlopen(site1 + '/cgi-sys/guestbook.cgi?user=%s' % site).read()\n if 'invalid username' not in resp.lower():\n print '\\t [*] Found -> ', site\n userslist.append(site)\n break\n else :\n print site\n \n site = site[:-1]\n except:\n pass\n \n clearScr()\n for user in userslist :\n print user", "metadata": "root.TNscan.getUsers", "header": "['class', 'TNscan', ':', '#TNscan Function menu', '___EOS___']", "index": 644 }, { "content": " def getServerBanner(self) :\n \"\"\"\n simply gets the server banner \n the attacker may benefit from it \n like getting the server side software\n \"\"\"\n clearScr()\n try:\n s = 'http://' + self.serverip\n httpresponse = urllib.urlopen(s)\n print ' [*] Server header -> ', httpresponse.headers.getheader('server')\n except:\n pass", "metadata": "root.TNscan.getServerBanner", "header": "['class', 'TNscan', ':', '#TNscan Function menu', '___EOS___']", "index": 710 }, { "content": " def grabSqli(self) :\n \"\"\"\n just grabs all websites in server with php?id= dork \n for scanning for error based sql injection\n \"\"\"\n page = 1\n lista = []\n while page <= 101:\n try:\n bing = \"http://www.bing.com/search?q=ip%3A\" + self.serverip + \"+php?id=&count=50&first=\" + str(page)\n openbing = urllib2.urlopen(bing)\n readbing = openbing.read()\n findwebs = re.findall('<h2><a href=\"(.*?)\"', readbing)\n for i in range(len(findwebs)):\n x = findwebs[i]\n lista.append(x)\n except:\n pass \n page += 50 \n lista = unique(lista) \n self.checkSqli(lista)", "metadata": "root.TNscan.grabSqli", "header": "['class', 'TNscan', ':', '#TNscan Function menu', '___EOS___']", "index": 725 }, { "content": " def checkSqli(self, s):\n \"\"\"\n checks for error based sql injection,\n most of the codes here are from webpwn3r \n project the one who has found an lfi in \n yahoo as i remember, you can find a separate \n tool in my blog \n \"\"\"\n clearScr()\n print \"[~] Checking SQL injection\"\n payloads = [\"3'\", \"3%5c\", \"3%27%22%28%29\", \"3'><\", \"3%22%5C%27%5C%22%29%3B%7C%5D%2A%7B%250d%250a%3C%2500%3E%25bf%2527%27\"]\n check = re.compile(\"Incorrect syntax|mysql_fetch|Syntax error|Unclosed.+mark|unterminated.+qoute|SQL.+Server|Microsoft.+Database|Fatal.+error\", re.I)\n for url in s:\n try:\n for param in url.split('?')[1].split('&'):\n for payload in payloads:\n power = url.replace(param, param + payload.strip())\n #print power\n html = urllib2.urlopen(power).readlines()\n for line in html:\n checker = re.findall(check, line)\n if len(checker) != 0 :\n print ' [*] SQLi found -> ', power\n except:\n pass", "metadata": "root.TNscan.checkSqli", "header": "['class', 'TNscan', ':', '#TNscan Function menu', '___EOS___']", "index": 748 } ]

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[ { "content": "# -*- coding: utf-8 -*-\nfrom south.utils import datetime_utils as datetime\nfrom south.db import db\nfrom south.v2 import SchemaMigration\nfrom django.db import models\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Migration(SchemaMigration):\n\n\n\n\n\n models = {\n u'analyzing.analyzerepository': {\n 'Meta': {'unique_together': \"(('analyzed_at', 'instance_name'),)\", 'object_name': 'AnalyzeRepository'},\n 'analyzed_at': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'db_index': 'True', 'blank': 'True'}),\n 'cpu_alarm': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'created_at': ('django.db.models.fields.DateTimeField', [], {'auto_now_add': 'True', 'blank': 'True'}),\n 'database_name': ('django.db.models.fields.CharField', [], {'max_length': '60', 'db_index': 'True'}),\n 'email_sent': ('django.db.models.fields.BooleanField', [], {'default': 'False', 'db_index': 'True'}),\n 'engine_name': ('django.db.models.fields.CharField', [], {'max_length': '20', 'db_index': 'True'}),\n 'environment_name': ('django.db.models.fields.CharField', [], {'max_length': '30', 'db_index': 'True'}),\n u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),\n 'instance_name': ('django.db.models.fields.CharField', [], {'max_length': '100', 'db_index': 'True'}),\n 'memory_alarm': ('django.db.models.fields.BooleanField', [], {'default': 'False'}),\n 'updated_at': ('django.db.models.fields.DateTimeField', [], {'auto_now': 'True', 'blank': 'True'})\n }\n }\n\n complete_apps = ['analyzing']", "metadata": "root.Migration", "header": "['module', '___EOS___']", "index": 7 }, { "content": " def forwards(self, orm):\n # Adding field 'AnalyzeRepository.email_sent'\n db.add_column(u'analyzing_analyzerepository', 'email_sent',\n self.gf('django.db.models.fields.BooleanField')(default=False, db_index=True),\n keep_default=False)\n\n # Adding index on 'AnalyzeRepository', fields ['engine_name']\n db.create_index(u'analyzing_analyzerepository', ['engine_name'])\n\n # Adding index on 'AnalyzeRepository', fields ['environment_name']\n db.create_index(u'analyzing_analyzerepository', ['environment_name'])\n\n # Adding index on 'AnalyzeRepository', fields ['instance_name']\n db.create_index(u'analyzing_analyzerepository', ['instance_name'])\n\n # Adding index on 'AnalyzeRepository', fields ['analyzed_at']\n db.create_index(u'analyzing_analyzerepository', ['analyzed_at'])\n\n # Adding index on 'AnalyzeRepository', fields ['database_name']\n db.create_index(u'analyzing_analyzerepository', ['database_name'])", "metadata": "root.Migration.forwards", "header": "['class', 'Migration', '(', 'SchemaMigration', ')', ':', '___EOS___']", "index": 9 }, { "content": " def backwards(self, orm):\n # Removing index on 'AnalyzeRepository', fields ['database_name']\n db.delete_index(u'analyzing_analyzerepository', ['database_name'])\n\n # Removing index on 'AnalyzeRepository', fields ['analyzed_at']\n db.delete_index(u'analyzing_analyzerepository', ['analyzed_at'])\n\n # Removing index on 'AnalyzeRepository', fields ['instance_name']\n db.delete_index(u'analyzing_analyzerepository', ['instance_name'])\n\n # Removing index on 'AnalyzeRepository', fields ['environment_name']\n db.delete_index(u'analyzing_analyzerepository', ['environment_name'])\n\n # Removing index on 'AnalyzeRepository', fields ['engine_name']\n db.delete_index(u'analyzing_analyzerepository', ['engine_name'])\n\n # Deleting field 'AnalyzeRepository.email_sent'\n db.delete_column(u'analyzing_analyzerepository', 'email_sent')", "metadata": "root.Migration.backwards", "header": "['class', 'Migration', '(', 'SchemaMigration', ')', ':', '___EOS___']", "index": 31 } ]

[ { "span": "from south.utils import datetime_utils as datetime", "start_line": 1, "start_column": 0, "end_line": 1, "end_column": 50 }, { "span": "from django.db import models", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 28 } ]

[]

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[ { "content": "\tdef epochseconds_to_iso8601(self, s = None):\n\t\tt = None\n\t\tif s == None:\n\t\t\tdt = datetime.datetime.now()\n\t\telse:\n\t\t\tdt = datetime.datetime.utcfromtimestamp(s)\n\n\t\t# truncates microseconds\n\t\tdt = dt.replace(microsecond=0)\n\n\t\trt = dt.isoformat()\n\t\t\n\t\treturn rt", "metadata": "root.RecoverYas3fsPlugin.epochseconds_to_iso8601", "header": "['class', 'RecoverYas3fsPlugin', '(', 'YAS3FSPlugin', ')', ':', '___EOS___']", "index": 19 }, { "content": "\tdef do_cmd_on_s3_now_w_retries(self, fn):\n\t\t# self, key, pub, action, args, kargs, retries = 1\n\t\tdef wrapper(*args, **kargs):\n\t\t\ttry:\n\t\t\t\treturn fn(*args, **kargs)\n\t\t\texcept Exception as e:\n\t\t\t\tself.logger.error(\"PLUGIN\")\n\t\t\t\tselfless_args = None\n\t\t\t\tif args[1]:\n\t\t\t\t\tselfless_args = args[1:]\n\t\t\t\tself.logger.error(\"PLUGIN do_cmd_on_s3_now_w_retries FAILED\" + \" \" + str(selfless_args))\n\n\t\t\t\ts = args[0]\n\t\t\t\tkey = args[1]\n\t\t\t\tpub = args[2]\n\t\t\t\taction = args[3]\n\t\t\t\targ = args[4]\n\t\t\t\tkargs = args[5]\n\n\n\t\t\t\t### trying to recover\n\t\t\t\tif pub[0] == 'upload':\n\t\t\t\t\ttry:\n\t\t\t\t\t\tpath = pub[1]\n\t\t\t\t\t\tcache_file = s.cache.get_cache_filename(path)\n\t\t\t\t\t\tcache_stat = os.stat(cache_file)\n\t\t\t\t\t\tetag = None\n\t\t\t\t\t\tetag_filename = s.cache.get_cache_etags_filename(path)\n\t\t\t\t\t\tif os.path.isfile(etag_filename):\n\t\t\t\t\t\t\t\twith open(etag_filename, mode='r') as etag_file:\n\t\t\t\t\t\t\t\t\t\tetag = etag_file.read()\n\t\t\t\t\t#\tprint etag_filename\n\t\t\t\t\t#\tprint etag\n\n\n\t\t\t\t\t\tjson_recover = {\n\t\t\t\t\t\t\t\"action\" : action,\n\t\t\t\t\t\t\t\"action_time\" : self.epochseconds_to_iso8601(),\n\t\t\t\t\t\t\t\"pub_action\" : pub[0],\n\t\t\t\t\t\t\t\"file\" : path,\n\t\t\t\t\t\t\t\"cache_file\" : cache_file,\n\t\t\t\t\t\t\t\"cache_stat\" : self.stat_to_dict(cache_stat),\n\t\t\t\t\t\t\t# \"cache_file_size\" : cache_stat.st_size,\n\t\t\t\t\t\t\t# \"cache_file_ctime\" : self.epochseconds_to_iso8601(cache_stat.st_ctime),\n\t\t\t\t\t\t\t# \"cache_file_mtime\" : self.epochseconds_to_iso8601(cache_stat.st_mtime),\n\t\t\t\t\t\t\t\"etag_filename\": etag_filename,\n\t\t\t\t\t\t\t\"etag\": etag,\n\t\t\t\t\t\t\t\"exception\": str(e),\n\t\t\t\t\t\t\t\"s3key\" : dict(filter(self.s3key_json_filter, key.__dict__.iteritems()))\n\t\t\t\t\t\t}\n\n\t\t\t\t\t\tself.logger.error(\"RecoverYAS3FS PLUGIN UPLOAD FAILED \" + json.dumps(json_recover))\n\n\t\t\t\t\t\tself.make_recovery_copy(cache_file)\n\n\t\t\t\t\texcept Exception, e:\n\t\t\t\t\t\tself.logger.exception(e)\n\n\t\t\treturn args[2] #????\n\t\treturn wrapper", "metadata": "root.RecoverYas3fsPlugin.do_cmd_on_s3_now_w_retries", "header": "['class', 'RecoverYas3fsPlugin', '(', 'YAS3FSPlugin', ')', ':', '___EOS___']", "index": 104 } ]

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[ { "content": "# Copyright (C) 2013 Nippon Telegraph and Telephone Corporation.\n# Copyright (C) 2013 Isaku Yamahata <yamahata at valinux co jp>\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or\n# implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\n\"\"\"\nUsage:\nPYTHONPATH=. ./bin/ryu-manager --verbose \\\n ryu.topology.switches \\\n ryu.tests.integrated.test_vrrp_multi \\\n ryu.services.protocols.vrrp.dumper\n\nryu.services.protocols.vrrp.dumper is optional.\n\n +---+ ----------------\n /--|OVS|<--veth-->| |\n Ryu +---+ | linux bridge |<--veth--> command to generate packets\n \\--|OVS|<--veth-->| |\n +---+ ----------------\n\nconfigure OVSs to connect ryu\nexample\n# brctl addbr b0\n# ip link add veth0-ovs type veth peer name veth0-br\n# ip link add veth1-ovs type veth peer name veth1-br\n# brctl addif b0 veth0-br\n# brctl addif b0 veth1-br\n# brctl show\nbridge name bridge id STP enabled interfaces\nb0 8000.6642e5822497 no veth0-br\n veth1-br\novs-system 0000.122038293b55 no\n\n# ovs-vsctl add-br s0\n# ovs-vsctl add-port s0 veth0-ovs\n# ovs-vsctl add-br s1\n# ovs-vsctl add-port s1 veth1-ovs\n# ovs-vsctl set-controller s0 tcp:127.0.0.1:6633\n# ovs-vsctl set bridge s0 protocols='[OpenFlow12]'\n# ovs-vsctl set-controller s1 tcp:127.0.0.1:6633\n# ovs-vsctl set bridge s1 protocols='[OpenFlow12]'\n# ovs-vsctl show\n20c2a046-ae7e-4453-a576-11034db24985\n Manager \"ptcp:6634\"\n Bridge \"s0\"\n Controller \"tcp:127.0.0.1:6633\"\n is_connected: true\n Port \"veth0-ovs\"\n Interface \"veth0-ovs\"\n Port \"s0\"\n Interface \"s0\"\n type: internal\n Bridge \"s1\"\n Controller \"tcp:127.0.0.1:6633\"\n is_connected: true\n Port \"veth1-ovs\"\n Interface \"veth1-ovs\"\n Port \"s1\"\n Interface \"s1\"\n type: internal\n ovs_version: \"1.9.90\"\n# ip link veth0-br set up\n# ip link veth0-ovs set up\n# ip link veth1-br set up\n# ip link veth1-ovs set up\n# ip link b0 set up\n\"\"\"\n\nfrom ryu.base import app_manager\nfrom ryu.controller import handler\nfrom ryu.lib import dpid as lib_dpid\nfrom ryu.lib import hub\nfrom ryu.lib.packet import vrrp\nfrom ryu.services.protocols.vrrp import api as vrrp_api\nfrom ryu.services.protocols.vrrp import event as vrrp_event\nfrom ryu.services.protocols.vrrp import monitor_openflow\nfrom ryu.topology import event as topo_event\nfrom ryu.topology import api as topo_api\n\nfrom . import vrrp_common\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class VRRPConfigApp(vrrp_common.VRRPCommon):\n _IFNAME0 = 0\n _IFNAME1 = 1\n\n\n", "metadata": "root.VRRPConfigApp", "header": "['module', '___EOS___']", "index": 93 }, { "content": " def __init__(self, *args, **kwargs):\n super(VRRPConfigApp, self).__init__(*args, **kwargs)\n self.start_main = False", "metadata": "root.VRRPConfigApp.__init__", "header": "['class', 'VRRPConfigApp', '(', 'vrrp_common', '.', 'VRRPCommon', ')', ':', '___EOS___']", "index": 97 }, { "content": " @handler.set_ev_cls(topo_event.EventSwitchEnter)\n def _switch_enter_handler(self, ev):\n if self.start_main:\n return\n\n switches = topo_api.get_switch(self)\n if len(switches) < 2:\n return\n\n self.start_main = True\n app_mgr = app_manager.AppManager.get_instance()\n self.logger.debug('%s', app_mgr.applications)\n self.switches = app_mgr.applications['switches']\n hub.spawn(self._main)", "metadata": "root.VRRPConfigApp._switch_enter_handler", "header": "['class', 'VRRPConfigApp', '(', 'vrrp_common', '.', 'VRRPCommon', ')', ':', '___EOS___']", "index": 101 }, { "content": " def _configure_vrrp_router(self, vrrp_version, priority,\n ip_addr, switch_index, vrid):\n switches = self.switches\n self.logger.debug('%s', switches.dps)\n dpid = sorted(switches.dps.keys())[switch_index]\n self.logger.debug('%s', lib_dpid.dpid_to_str(dpid))\n self.logger.debug('%s', switches.port_state)\n # hack: use the smallest port no to avoid picking OVS local port\n port_no = sorted(switches.port_state[dpid].keys())[0]\n self.logger.debug('%d', port_no)\n port = switches.port_state[dpid][port_no]\n self.logger.debug('%s', port)\n mac = port.hw_addr\n self.logger.debug('%s', mac)\n\n interface = vrrp_event.VRRPInterfaceOpenFlow(\n mac, ip_addr, None, dpid, port_no)\n self.logger.debug('%s', interface)\n\n config = vrrp_event.VRRPConfig(\n version=vrrp_version, vrid=vrid, priority=priority,\n ip_addresses=[ip_addr])\n self.logger.debug('%s', config)\n\n rep = vrrp_api.vrrp_config(self, interface, config)\n self.logger.debug('%s', rep)\n return rep", "metadata": "root.VRRPConfigApp._configure_vrrp_router", "header": "['class', 'VRRPConfigApp', '(', 'vrrp_common', '.', 'VRRPCommon', ')', ':', '___EOS___']", "index": 116 } ]

[ { "span": "from ryu.lib.packet import vrrp", "start_line": 83, "start_column": 0, "end_line": 83, "end_column": 31 }, { "span": "from ryu.services.protocols.vrrp import monitor_openflow", "start_line": 86, "start_column": 0, "end_line": 86, "end_column": 56 } ]

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[ { "content": "\nimport measurement\nimport resultsdb\nimport search\nimport tuningrunmain\nfrom opentuner.measurement import MeasurementInterface\nfrom opentuner.resultsdb.models import Configuration\nfrom opentuner.resultsdb.models import DesiredResult\nfrom opentuner.resultsdb.models import Result\nfrom opentuner.resultsdb.models import TuningRun\nfrom opentuner.search.manipulator import ConfigurationManipulator\nfrom opentuner.search.manipulator import EnumParameter\nfrom opentuner.search.manipulator import FloatParameter\nfrom opentuner.search.manipulator import IntegerParameter\nfrom opentuner.search.manipulator import LogFloatParameter\nfrom opentuner.search.manipulator import LogIntegerParameter\nfrom opentuner.search.manipulator import PermutationParameter\nfrom opentuner.search.manipulator import ScheduleParameter\nfrom opentuner.search.manipulator import SwitchParameter\nfrom opentuner.tuningrunmain import init_logging\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def argparsers():\n \"\"\"\n return a list of ArguementParser to be used as parents to the user's\n \"\"\"\n return [\n measurement.driver.argparser,\n search.driver.argparser,\n search.plugin.argparser,\n search.technique.argparser,\n #stats.argparser,\n tuningrunmain.argparser,\n ]", "metadata": "root.argparsers", "header": "['module', '___EOS___']", "index": 22 }, { "content": "def default_argparser():\n import argparse\n return argparse.ArgumentParser(parents=argparsers())", "metadata": "root.default_argparser", "header": "['module', '___EOS___']", "index": 36 } ]

[ { "span": "import resultsdb", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 16 }, { "span": "from opentuner.measurement import MeasurementInterface", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 54 }, { "span": "from opentuner.resultsdb.models import Configuration", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 52 }, { "span": "from opentuner.resultsdb.models import DesiredResult", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 52 }, { "span": "from opentuner.resultsdb.models import Result", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 45 }, { "span": "from opentuner.resultsdb.models import TuningRun", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 48 }, { "span": "from opentuner.search.manipulator import ConfigurationManipulator", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 65 }, { "span": "from opentuner.search.manipulator import EnumParameter", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 54 }, { "span": "from opentuner.search.manipulator import FloatParameter", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 55 }, { "span": "from opentuner.search.manipulator import IntegerParameter", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 57 }, { "span": "from opentuner.search.manipulator import LogFloatParameter", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 58 }, { "span": "from opentuner.search.manipulator import LogIntegerParameter", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 60 }, { "span": "from opentuner.search.manipulator import PermutationParameter", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 61 }, { "span": "from opentuner.search.manipulator import ScheduleParameter", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 58 }, { "span": "from opentuner.search.manipulator import SwitchParameter", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 56 }, { "span": "from opentuner.tuningrunmain import init_logging", "start_line": 19, "start_column": 0, "end_line": 19, "end_column": 48 } ]

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[ { "content": "\"\"\"\nTest Plot3D operations on :class:`DomainObj` objects.\n\"\"\"\n\nimport logging\nimport os.path\nimport tempfile\nimport shutil\nimport unittest\n\nfrom openmdao.lib.datatypes.domain import read_plot3d_q, write_plot3d_q, \\\n read_plot3d_f, write_plot3d_f, \\\n read_plot3d_shape, write_plot3d_grid\n\nfrom openmdao.lib.datatypes.domain.test.wedge import create_wedge_2d, \\\n create_wedge_3d\n\nfrom openmdao.util.testutil import assert_raises\n\n\n\n\nif __name__ == '__main__':\n import nose\n import sys\n sys.argv.append('--cover-package=openmdao.lib.datatypes.domain')\n sys.argv.append('--cover-erase')\n nose.runmodule()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestCase(unittest.TestCase):\n \"\"\" Test Plot3D operations on :class:`DomainObj` objects. \"\"\"\n\n\n\n\n\n\n", "metadata": "root.TestCase", "header": "['module', '___EOS___']", "index": 20 }, { "content": " def setUp(self):\n self.startdir = os.getcwd()\n self.tempdir = tempfile.mkdtemp(prefix='test_plot3d-')\n os.chdir(self.tempdir)", "metadata": "root.TestCase.setUp", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 23 }, { "content": " def tearDown(self):\n \"\"\" Clean up generated files. \"\"\"\n os.chdir(self.startdir)\n if not os.environ.get('OPENMDAO_KEEPDIRS', False):\n try:\n shutil.rmtree(self.tempdir)\n except OSError:\n pass", "metadata": "root.TestCase.tearDown", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 28 }, { "content": " def test_q_3d(self):\n logging.debug('')\n logging.debug('test_q_3d')\n\n logger = logging.getLogger()\n wedge = create_wedge_3d((30, 20, 10), 5., 0.5, 2., 30.)\n\n # Big-endian binary.\n write_plot3d_q(wedge, 'be-binary.xyz', 'be-binary.q', logger=logger,\n big_endian=True, unformatted=False)\n domain = read_plot3d_q('be-binary.xyz', 'be-binary.q', logger=logger,\n multiblock=False, big_endian=True,\n unformatted=False)\n self.assertFalse(domain.is_equivalent(wedge, logger=logger))\n domain.rename_zone('xyzzy', domain.zone_1)\n self.assertTrue(domain.is_equivalent(wedge, logger=logger))\n\n # Little-endian unformatted.\n write_plot3d_q(domain, 'unformatted.xyz', 'unformatted.q',\n logger=logger)\n domain = read_plot3d_q('unformatted.xyz', 'unformatted.q',\n logger=logger, multiblock=False)\n self.assertFalse(domain.is_equivalent(wedge, logger=logger))\n domain.rename_zone('xyzzy', domain.zone_1)\n self.assertTrue(domain.is_equivalent(wedge, logger=logger))\n\n # Multiblock.\n wedge2 = create_wedge_3d((29, 19, 9), 5., 2.5, 4., 30.)\n domain.add_domain(wedge2)\n write_plot3d_q(domain, 'unformatted.xyz', 'unformatted.q',\n logger=logger)\n domain = read_plot3d_q('unformatted.xyz', 'unformatted.q',\n logger=logger)\n\n shape = read_plot3d_shape('unformatted.xyz', logger=logger)\n self.assertEqual(shape, [(30, 20, 10), (29, 19, 9)])\n\n # Errors.\n try:\n read_plot3d_q('unformatted.xyz', 'unformatted.q', blanking=True,\n logger=logger, multiblock=False)\n except NotImplementedError as exc:\n self.assertEqual(str(exc), 'blanking not supported yet')\n else:\n self.fail('Expected NotImplementedError')\n\n try:\n read_plot3d_q('unformatted.xyz', 'unformatted.q', planes=True,\n logger=logger, multiblock=False)\n except NotImplementedError as exc:\n self.assertEqual(str(exc), 'planar format not supported yet')\n else:\n self.fail('Expected NotImplementedError')\n\n assert_raises(self, \"write_plot3d_q(logger, 'u.xyz', 'u.q')\",\n globals(), locals(), TypeError,\n \"'domain' argument must be a DomainObj or Zone\")\n\n assert_raises(self, \"write_plot3d_f(logger, 'u.xyz', 'u.f')\",\n globals(), locals(), TypeError,\n \"'domain' argument must be a DomainObj or Zone\")\n\n assert_raises(self, \"write_plot3d_grid(logger, 'u.xyz')\",\n globals(), locals(), TypeError,\n \"'domain' argument must be a DomainObj or Zone\")\n\n wedge = create_wedge_3d((30, 20, 10), 5., 0.5, 2., 30.)\n delattr(wedge.xyzzy.flow_solution, 'mach')\n assert_raises(self, \"write_plot3d_q(wedge, 'u.xyz', 'u.q')\",\n globals(), locals(), AttributeError,\n \"zone xyzzy flow_solution is missing ['mach']\")\n\n assert_raises(self, \"write_plot3d_f(wedge, 'u.xyz', 'u.f', ['froboz'])\",\n globals(), locals(), AttributeError,\n \"zone xyzzy flow_solution is missing ['froboz']\")", "metadata": "root.TestCase.test_q_3d", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 37 }, { "content": " def test_q_2d(self):\n logging.debug('')\n logging.debug('test_q_2d')\n\n logger = logging.getLogger()\n wedge = create_wedge_2d((20, 10), 0.5, 2., 30.)\n\n # Big-endian binary.\n write_plot3d_q(wedge, 'be-binary.xyz', 'be-binary.q', logger=logger,\n big_endian=True, unformatted=False)\n domain = read_plot3d_q('be-binary.xyz', 'be-binary.q', logger=logger,\n dim=2, multiblock=False, big_endian=True,\n unformatted=False)\n self.assertFalse(domain.is_equivalent(wedge, logger=logger))\n domain.rename_zone('xyzzy', domain.zone_1)\n self.assertTrue(domain.is_equivalent(wedge, logger=logger))\n\n # Little-endian unformatted.\n write_plot3d_q(domain, 'unformatted.xyz', 'unformatted.q',\n logger=logger)\n domain = read_plot3d_q('unformatted.xyz', 'unformatted.q',\n logger=logger, dim=2, multiblock=False)\n self.assertFalse(domain.is_equivalent(wedge, logger=logger))\n domain.rename_zone('xyzzy', domain.zone_1)\n self.assertTrue(domain.is_equivalent(wedge, logger=logger))", "metadata": "root.TestCase.test_q_2d", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 113 }, { "content": " def test_f_3d(self):\n logging.debug('')\n logging.debug('test_f_3d')\n\n logger = logging.getLogger()\n wedge = create_wedge_3d((30, 20, 10), 5., 0.5, 2., 30.)\n wedge_flow = wedge.xyzzy.flow_solution\n varnames = ('density', 'momentum', 'energy_stagnation_density')\n\n # Big-endian binary.\n write_plot3d_f(wedge, 'be-binary.xyz', 'be-binary.f', varnames,\n logger=logger, big_endian=True, unformatted=False)\n domain = read_plot3d_f('be-binary.xyz', 'be-binary.f', logger=logger,\n multiblock=False, big_endian=True,\n unformatted=False)\n test_flow = domain.zone_1.flow_solution\n self.assertTrue((test_flow.f_1 == wedge_flow.density).all())\n self.assertTrue((test_flow.f_2 == wedge_flow.momentum.x).all())\n self.assertTrue((test_flow.f_3 == wedge_flow.momentum.y).all())\n self.assertTrue((test_flow.f_4 == wedge_flow.momentum.z).all())\n self.assertTrue((test_flow.f_5 == wedge_flow.energy_stagnation_density).all())\n\n # Little-endian unformatted.\n write_plot3d_f(domain, 'unformatted.xyz', 'unformatted.f',\n logger=logger)\n domain = read_plot3d_f('unformatted.xyz', 'unformatted.f',\n logger=logger, multiblock=False)\n test_flow = domain.zone_1.flow_solution\n self.assertTrue((test_flow.f_1 == wedge_flow.density).all())\n self.assertTrue((test_flow.f_2 == wedge_flow.momentum.x).all())\n self.assertTrue((test_flow.f_3 == wedge_flow.momentum.y).all())\n self.assertTrue((test_flow.f_4 == wedge_flow.momentum.z).all())\n self.assertTrue((test_flow.f_5 == wedge_flow.energy_stagnation_density).all())", "metadata": "root.TestCase.test_f_3d", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 140 }, { "content": " def test_f_2d(self):\n logging.debug('')\n logging.debug('test_f_2d')\n\n logger = logging.getLogger()\n wedge = create_wedge_2d((20, 10), 0.5, 2., 30.)\n wedge_flow = wedge.xyzzy.flow_solution\n varnames = ('density', 'momentum', 'energy_stagnation_density')\n\n # Big-endian binary.\n write_plot3d_f(wedge, 'be-binary.xyz', 'be-binary.f', varnames,\n logger=logger, big_endian=True, unformatted=False)\n domain = read_plot3d_f('be-binary.xyz', 'be-binary.f', logger=logger,\n dim=2, multiblock=False, big_endian=True,\n unformatted=False)\n test_flow = domain.zone_1.flow_solution\n self.assertTrue((test_flow.f_1 == wedge_flow.density).all())\n self.assertTrue((test_flow.f_2 == wedge_flow.momentum.x).all())\n self.assertTrue((test_flow.f_3 == wedge_flow.momentum.y).all())\n self.assertTrue((test_flow.f_4 == wedge_flow.energy_stagnation_density).all())\n\n # Little-endian unformatted.\n write_plot3d_f(domain, 'unformatted.xyz', 'unformatted.f',\n logger=logger)\n varnames = ('density', 'momentum_x')\n domain = read_plot3d_f('unformatted.xyz', 'unformatted.f', varnames,\n logger=logger, dim=2, multiblock=False)\n test_flow = domain.zone_1.flow_solution\n self.assertTrue((test_flow.density == wedge_flow.density).all())\n self.assertTrue((test_flow.momentum_x == wedge_flow.momentum.x).all())\n self.assertTrue((test_flow.f_3 == wedge_flow.momentum.y).all())\n self.assertTrue((test_flow.f_4 == wedge_flow.energy_stagnation_density).all())", "metadata": "root.TestCase.test_f_2d", "header": "['class', 'TestCase', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 174 } ]

[ { "span": "from openmdao.lib.datatypes.domain import read_plot3d_q, write_plot3d_q, \\\n read_plot3d_f, write_plot3d_f, \\\n read_plot3d_shape, write_plot3d_grid", "start_line": 10, "start_column": 0, "end_line": 12, "end_column": 78 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "################################################################################\n#\n# MRC FGU Computational Genomics Group\n#\n# $Id: pipeline_snps.py 2870 2010-03-03 10:20:29Z andreas $\n#\n# Copyright (C) 2009 Andreas Heger\n#\n# This program is free software; you can redistribute it and/or\n# modify it under the terms of the GNU General Public License\n# as published by the Free Software Foundation; either version 2\n# of the License, or (at your option) any later version.\n#\n# This program is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n# GNU General Public License for more details.\n#\n# You should have received a copy of the GNU General Public License\n# along with this program; if not, write to the Free Software\n# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.\n#################################################################################\n\"\"\"\npipeline_prdm9.py\n=================\n\n:Author: Andreas Heger\n:Release: $Id$\n:Date: |today|\n:Tags: Python\n\nPurpose\n-------\n\nAnalysis of prdm9 in 17 mouse strains.\n\nUsage\n-----\n\nType::\n\n python <script_name>.py --help\n\nfor command line help.\n\nCode\n----\n\n\"\"\"\nfrom ruffus import *\nimport sys\nimport glob\nimport gzip\nimport os\nimport itertools\nimport CGAT.CSV as CSV\nimport re\nimport math\nimport types\nimport optparse\nimport shutil\nimport sqlite3\nimport CGAT.GFF as GFF\nimport CGAT.GTF as GTF\nimport CGAT.Experiment as E\nimport CGAT.Pipeline as P\nimport CGAT.IOTools as IOTools\nimport CGAT.Genomics as Genomics\nimport CGAT.Database as Database\nimport CGAT.FastaIterator as FastaIterator\nimport PipelineGeneset as PGeneset\nimport PipelineGO as PGO\nimport scipy.stats\nimport CGAT.Stats as Stats\nimport alignlib\nimport CGAT.Mali as Mali\n\nPARAMS = P.getParameters()\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\nif __name__== \"__main__\":\n sys.exit( P.main(sys.argv) )\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@files( ((\"../data/znf.data\", \"profile.fasta\" ) , ))\ndef createProfile( infile, outfile ):\n '''convert mali to profile\n '''\n outfile = open(outfile, \"w\")\n for line in open(infile):\n if line.startswith(\"#\"): continue\n data = re.split(\"\\s+\", line[:-1],1)\n print data\n pid, sequence = data\n outfile.write(\">%s\\n%s\\n\" % (pid, sequence ))\n outfile.close()", "metadata": "root.createProfile", "header": "['module', '___EOS___']", "index": 79 }, { "content": "def getParts( src ):\n '''split a wrap-around alignment'''\n\n result = None\n r = []\n last_s = src.getColTo()\n for p in range( src.getRowFrom(), \n src.getRowTo() ):\n s = src.mapRowToCol(p)\n if s < 0: continue\n if last_s >= s:\n if result:\n r.append( result )\n result = alignlib.makeAlignmentVector()\n last_s = s\n result.addPair( s, p, 0 )\n\n if result:\n r.append( result )\n return r", "metadata": "root.getParts", "header": "['module', '___EOS___']", "index": 92 }, { "content": "def alignIndels( all_alleles, colcounts, extend_by = 0 ):\n '''align all indel-regions.'''\n\n aa = alignlib.makeAlignatorDPFull( alignlib.ALIGNMENT_LOCAL, 0, 0 ) \n alignator = alignlib.makeMultipleAlignatorSimple( aa)\n\n ids = all_alleles.keys()\n\n for x,c in enumerate(colcounts):\n if c <= 1: continue\n sequences = alignlib.StringVector()\n for sid in ids:\n for allele in all_alleles[sid]:\n sequences.append( allele[x] )\n\n mali = alignlib.makeMultAlignment()\n alignator.align( mali, sequences )\n realigned = []\n for line in str(alignlib.MultAlignmentFormatPlain( mali, sequences )).split(\"\\n\")[:-1]:\n data = line[:-1].split(\"\\t\")\n realigned.append( data[1] )\n assert len(realigned) == len(sequences)\n\n l = max( [len(r) for r in realigned] )\n i = 0\n for sid in ids:\n for allele in all_alleles[sid]:\n if realigned[i]: allele[x] = realigned[i] \n else: allele[x] = \"-\" * l \n i += 1\n \n colcounts[x] = l", "metadata": "root.alignIndels", "header": "['module', '___EOS___']", "index": 113 }, { "content": "def _alignToProfile( infile, outfile, \n min_score = 0 ):\n '''align sequences in *infile* against mali\n\n Only alignments with a score higher than *min_score* are accepted.\n\n Output multiple alignment in fasta format to *outfile* and a table\n in :file:`outfile.log`.\n '''\n\n mali = Mali.Mali()\n mali.readFromFile( open(\"../data/mouse.fasta\") )\n src_mali = Mali.convertMali2Alignlib( mali )\n \n E.debug( \"read mali: %i sequences x %i columns\" % (mali.getNumSequences(), mali.getNumColumns() ))\n\n # add pseudocounts\n profile_mali = mali.getClone()\n n = profile_mali.getNumColumns() \n for x in \"ACGT\": \n for y in range(0,2):\n profile_mali.addSequence( \"%s%i\" % (x,y), 0, n, x * n )\n\n\n profile_mali = Mali.convertMali2Alignlib( profile_mali )\n alignlib.setDefaultEncoder( alignlib.getEncoder( alignlib.DNA4 ) )\n alignlib.setDefaultLogOddor( alignlib.makeLogOddorUniform() )\n\n # bg = alignlib.FrequencyVector()\n # bg.extend( ( 0.3, 0.1, 0.2, 0.2, 0.2) )\n # alignlib.setDefaultRegularizor( alignlib.makeRegularizorTatusov(\n # alignlib.makeSubstitutionMatrixDNA4(),\n # bg,\n # \"ACGTN\",\n # 10.0, 1.0) )\n\n profile = alignlib.makeProfile( profile_mali )\n \n alignment_mode = alignlib.ALIGNMENT_WRAP\n\n alignator = alignlib.makeAlignatorDPFull( alignment_mode,\n -5.0,\n -0.5 )\n \n map_seq2profile = alignlib.makeAlignmentVector()\n map_rseq2profile = alignlib.makeAlignmentVector()\n profile.prepare()\n\n # print profile\n\n build_mali = alignlib.makeMultAlignment()\n m = alignlib.makeAlignmentVector()\n m.addDiagonal( 0, n, 0 )\n build_mali.add( src_mali, m )\n\n outf = open( outfile, \"w\" )\n outf_log = open( outfile + \".info\", \"w\" )\n outf_log.write( \"read_id\\tlength\\tstart\\tend\\tparts\\tcovered\\tpcovered\\tscore\\tmali_start\\tmali_end\\tmali_covered\\tmali_pcovered\\n\" )\n\n sequences, aa = alignlib.StringVector(), alignlib.AlignandumVector()\n ids = []\n\n for pid in mali.getIdentifiers():\n sequences.append( re.sub( \"-\", \"\", mali[pid] ) )\n ids.append( pid )\n\n # print str(alignlib.MultAlignmentFormatPlain( build_mali, sequences ))\n\n c = E.Counter()\n\n for s in FastaIterator.FastaIterator( open(infile)):\n\n E.debug(\"adding %s\" % s.title )\n c.input += 1\n rsequence = Genomics.complement(s.sequence)\n seq = alignlib.makeSequence( s.sequence )\n rseq = alignlib.makeSequence( rsequence )\n\n alignator.align( map_seq2profile, seq, profile )\n alignator.align( map_rseq2profile, rseq, profile )\n\n if map_seq2profile.getScore() > map_rseq2profile.getScore():\n m, seq, sequence = map_seq2profile, seq, s.sequence\n else:\n m, seq, sequence = map_rseq2profile, rseq, rsequence\n\n if m.getLength() == 0:\n c.skipped += 1\n continue\n\n if m.getScore() < min_score: \n c.skipped += 1\n continue\n\n r = getParts( m )\n\n covered = 0\n for mm in r:\n build_mali.add( mm )\n sequences.append( sequence )\n ids.append( s.title )\n covered += mm.getLength() - mm.getNumGaps()\n\n mali_covered = m.getColTo() - m.getColFrom()\n\n outf_log.write( \"\\t\".join( map(str, (\n s.title,\n len(s.sequence),\n m.getRowFrom(),\n m.getRowTo(),\n len(r),\n covered,\n \"%5.2f\" % (100.0 * covered / len(s.sequence) ),\n m.getScore(),\n m.getColFrom(),\n m.getColTo(),\n mali_covered,\n \"%5.2f\" % ((100.0 * mali_covered) / mali.getNumColumns())\n ) ) ) + \"\\n\" )\n\n c.output += 1\n\n #build_mali.expand( aa )\n result = str(alignlib.MultAlignmentFormatPlain( build_mali, \n sequences, \n alignlib.UnalignedStacked ))\n\n for pid, data in zip(ids, result.split(\"\\n\") ):\n start, sequence, end = data.split(\"\\t\")\n outf.write(\">%s/%i-%i\\n%s\\n\" % (pid, int(start)+1, int(end), sequence) )\n\n\n outf.close()\n outf_log.close()\n\n E.info( \"%s\\n\" % str(c) )", "metadata": "root._alignToProfile", "header": "['module', '___EOS___']", "index": 146 }, { "content": "@follows(createProfile)\n@files( [ (x, \"%s_%03i_na.mali\" % (x[:-3],f), f) \n for x,f in itertools.product( glob.glob(\"*.fa\"), (0, 80 ) ) ] )\ndef alignToProfile( infile, outfile, threshold ):\n _alignToProfile( infile, outfile, min_score = threshold )", "metadata": "root.alignToProfile", "header": "['module', '___EOS___']", "index": 283 }, { "content": "@transform( alignToProfile\n , suffix( \".mali\")\n , \".import\" )\ndef importMaliStats( infile, outfile ):\n '''import stats.'''\n \n table = P.toTable( outfile ) + \"_info\" \n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s\n --index=read_id \n --table=%(table)s \n < %(infile)s.info\n > %(outfile)s\n '''\n P.run()", "metadata": "root.importMaliStats", "header": "['module', '___EOS___']", "index": 289 }, { "content": "@transform( alignToProfile\n , suffix( \"_na.mali\")\n , \"_aa.mali\" )\ndef buildMalisCodon( infile, outfile ):\n '''build codon alignments\n\n The frame is given by the master multiple alignment.\n\n Sequences with indels that are not multiples of three\n are removed.\n\n Sequences with stop codons are removed.\n TODO\n '''\n \n statement = '''\n cat %(infile)s\n | python %(scriptsdir)s/fasta2fasta.py --method=translate \n | perl -p -e \"s/[a-z]/-/g unless (/^>/)\"\n | python %(scriptsdir)s/mali2mali.py --method=remove-all-gaps --log=%(outfile)s.log --allow-duplicates\n\n > %(outfile)s\n '''\n \n P.run()", "metadata": "root.buildMalisCodon", "header": "['module', '___EOS___']", "index": 305 }, { "content": "@transform( alignToProfile\n , suffix( \"_na.mali\")\n , \"_aa.mali\" )\ndef buildMalisAA( infile, outfile ):\n '''translate multiple alignments.\n\n The frame is given by the master multiple alignment.\n\n Indels in other sequences are ignored.\n '''\n \n statement = '''\n cat %(infile)s\n | perl -p -e \"s/[a-z]/-/g unless (/^>/)\"\n | python %(scriptsdir)s/mali2mali.py --method=remove-all-gaps --log=%(outfile)s.log --allow-duplicates\n | python %(scriptsdir)s/fasta2fasta.py --method=translate \n > %(outfile)s\n '''\n \n P.run()", "metadata": "root.buildMalisAA", "header": "['module', '___EOS___']", "index": 332 }, { "content": "@transform( alignToProfile\n , suffix( \"_na.mali\")\n , \"_na.columns\" )\ndef computeColumnStatsNA( infile, outfile ):\n '''compute stats per column.\n\n Only columns are counted that are non-insert with respect to\n the master alignment. The master alignment columns are\n later removed in order to count only sequences within \n a strain.\n '''\n \n statement = '''\n cat %(infile)s\n | perl -p -e \"s/[a-z]/-/g unless (/^>/)\"\n | python %(scriptsdir)s/mali2mali.py --method=remove-all-gaps --log=%(outfile)s.log --allow-duplicates\n | python %(scriptsdir)s/fasta2fasta.py --exclude=\"(^mouse)\" --log=%(outfile)s.log\n | python %(scriptsdir)s/mali2table.py --section=all --log=%(outfile)s.log --allow-duplicates\n > %(outfile)s\n '''\n \n P.run()", "metadata": "root.computeColumnStatsNA", "header": "['module', '___EOS___']", "index": 353 }, { "content": "@transform( buildMalisAA\n , suffix( \"_aa.mali\")\n , \"_aa.columns\" )\ndef computeColumnStatsAA( infile, outfile ):\n '''compute stats per column.\n\n Only columns are counted that are non-insert with respect to\n the master alignment. The master alignment columns are\n later removed.\n '''\n \n statement = '''\n cat %(infile)s\n | perl -p -e \"s/[X?]/-/g unless (/^>/)\"\n | python %(scriptsdir)s/fasta2fasta.py --exclude=\"(^mouse)\" --log=%(outfile)s.log\n | python %(scriptsdir)s/mali2table.py --section=all --log=%(outfile)s.log --allow-duplicates --alphabet=aa\n > %(outfile)s\n '''\n \n P.run()", "metadata": "root.computeColumnStatsAA", "header": "['module', '___EOS___']", "index": 376 }, { "content": "@transform( (computeColumnStatsNA, computeColumnStatsAA)\n , suffix( \".columns\")\n , \"_columns.import\" )\ndef importColumnStats( infile, outfile ):\n '''import stats.'''\n \n table = P.toTable( outfile ) \n statement = '''\n python %(scriptsdir)s/csv2db.py %(csv2db_options)s\n --index=column \n --table=%(table)s \n < %(infile)s\n > %(outfile)s\n '''\n P.run()", "metadata": "root.importColumnStats", "header": "['module', '___EOS___']", "index": 397 }, { "content": "@follows( alignToProfile\n , importMaliStats\n , computeColumnStatsNA\n , buildMalisAA\n , computeColumnStatsAA\n , importColumnStats\n )\ndef full(): pass", "metadata": "root.full", "header": "['module', '___EOS___']", "index": 414 } ]

[ { "span": "import gzip", "start_line": 52, "start_column": 0, "end_line": 52, "end_column": 11 }, { "span": "import os", "start_line": 53, "start_column": 0, "end_line": 53, "end_column": 9 }, { "span": "import CGAT.CSV as CSV", "start_line": 55, "start_column": 0, "end_line": 55, "end_column": 22 }, { "span": "import math", "start_line": 57, "start_column": 0, "end_line": 57, "end_column": 11 }, { "span": "import types", "start_line": 58, "start_column": 0, "end_line": 58, "end_column": 12 }, { "span": "import optparse", "start_line": 59, "start_column": 0, "end_line": 59, "end_column": 15 }, { "span": "import shutil", "start_line": 60, "start_column": 0, "end_line": 60, "end_column": 13 }, { "span": "import sqlite3", "start_line": 61, "start_column": 0, "end_line": 61, "end_column": 14 }, { "span": "import CGAT.GFF as GFF", "start_line": 62, "start_column": 0, "end_line": 62, "end_column": 22 }, { "span": "import CGAT.GTF as GTF", "start_line": 63, "start_column": 0, "end_line": 63, "end_column": 22 }, { "span": "import CGAT.IOTools as IOTools", "start_line": 66, "start_column": 0, "end_line": 66, "end_column": 30 }, { "span": "import CGAT.Database as Database", "start_line": 68, "start_column": 0, "end_line": 68, "end_column": 32 }, { "span": "import PipelineGeneset as PGeneset", "start_line": 70, "start_column": 0, "end_line": 70, "end_column": 34 }, { "span": "import PipelineGO as PGO", "start_line": 71, "start_column": 0, "end_line": 71, "end_column": 24 }, { "span": "import scipy.stats", "start_line": 72, "start_column": 0, "end_line": 72, "end_column": 18 }, { "span": "import CGAT.Stats as Stats", "start_line": 73, "start_column": 0, "end_line": 73, "end_column": 26 } ]

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[ { "content": " @classmethod\n def from_sid(cls, sid, system=None):\n \"\"\"Return a :class:`Principal` based on a sid and a security authority.\n\n :param sid: a PySID\n :param system_name: optional name of a security authority\n :returns: a :class:`Principal` object for `sid`\n \"\"\"\n try:\n name, domain, type = wrapped(\n win32security.LookupAccountSid,\n None if system is None else unicode(system),\n sid\n )\n except exc.x_not_found:\n name = domain = type = core.UNSET\n cls = cls.SID_NAME_USE_MAP.get(type, cls)\n return cls(sid, None if system is None else unicode(system))", "metadata": "root.Principal.from_sid", "header": "['class', 'Principal', '(', 'core', '.', '_WinSysObject', ')', ':', '___EOS___']", "index": 250 }, { "content": " def runas(self, command_line, password=core.UNSET, load_profile=False):\n \"\"\"Run a command logged on as this user\n\n :param command_line: command line to run, quoted as necessary\n :param password: password; if not supplied, standard Windows prompt\n :param with_profile: if True, HKEY_CURRENT_USER is loaded [False]\n \"\"\"\n #~ if not password:\n #~ password = dialogs.get_password(self.name, self.domain)\n logon_flags = 0\n if load_profile: logon_flags |= _advapi32.LOGON_FLAGS.WITH_PROFILE\n process_info = _advapi32.CreateProcessWithLogonW(\n username=self.name,\n domain=self.domain,\n password=password,\n command_line=command_line,\n logon_flags=logon_flags\n )\n #\n # Wait for up to 20 secs\n #\n #~ if wrapped(win32event.WaitForInputIdle, process_info.hProcess, 10000) == win32event.WAIT_TIMEOUT:\n #~ raise x_accounts(errctx=\"runas\", errmsg=\"runas process not created with 10 secs\")", "metadata": "root.User.runas", "header": "['class', 'User', '(', 'Principal', ')', ':', '___EOS___']", "index": 373 } ]

[ { "span": "name ", "start_line": 265, "start_column": 12, "end_line": 265, "end_column": 16 }, { "span": "domain ", "start_line": 265, "start_column": 19, "end_line": 265, "end_column": 25 }, { "span": "process_info ", "start_line": 384, "start_column": 8, "end_line": 384, "end_column": 20 } ]

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[ { "content": "def contests():\n \"\"\"\n Show the upcoming contests\n \"\"\"\n\n today = datetime.datetime.today()\n today = datetime.datetime.strptime(str(today)[:-7],\n \"%Y-%m-%d %H:%M:%S\")\n\n start_date = today.date()\n end_date = start_date + datetime.timedelta(90)\n url = \"https://contesttrackerapi.herokuapp.com/\"\n response = requests.get(url)\n if response.status_code == 200:\n response = response.json()[\"result\"]\n else:\n # @todo: something better\n return dict()\n\n ongoing = response[\"ongoing\"]\n upcoming = response[\"upcoming\"]\n contests = []\n cal = pdt.Calendar()\n\n table = TABLE(_class=\"centered striped\")\n thead = THEAD(TR(TH(\"Contest Name\"),\n TH(\"Site\"),\n TH(\"Start\"),\n TH(\"Duration/Ending\"),\n TH(\"Link\"),\n TH(\"Add Reminder\")))\n table.append(thead)\n tbody = TBODY()\n\n for i in ongoing:\n\n if i[\"Platform\"] in (\"TOPCODER\", \"OTHER\"):\n continue\n\n try:\n endtime = datetime.datetime.strptime(i[\"EndTime\"],\n \"%a, %d %b %Y %H:%M\")\n except ValueError:\n continue\n tr = TR()\n span = SPAN(_class=\"green tooltipped\",\n data={\"position\": \"right\",\n \"delay\": \"50\",\n \"tooltip\": \"Live Contest\"},\n _style=\"cursor: pointer; \" + \\\n \"float:right; \" + \\\n \"height:10px; \" + \\\n \"width:10px; \" + \\\n \"border-radius: 50%;\")\n tr.append(TD(i[\"Name\"], span))\n tr.append(TD(i[\"Platform\"].capitalize()))\n tr.append(TD(\"-\"))\n tr.append(TD(str(endtime).replace(\"-\", \"/\"),\n _class=\"contest-end-time\"))\n tr.append(TD(A(I(_class=\"fa fa-external-link-square fa-lg\"),\n _class=\"btn-floating btn-small green accent-4 tooltipped\",\n _href=i[\"url\"],\n data={\"position\": \"left\",\n \"tooltip\": \"Contest Link\",\n \"delay\": \"50\"},\n _target=\"_blank\")))\n tr.append(TD(BUTTON(I(_class=\"fa fa-calendar-plus-o\"),\n _class=\"btn-floating btn-small orange accent-4 tooltipped disabled\",\n data={\"position\": \"left\",\n \"tooltip\": \"Already started!\",\n \"delay\": \"50\"})))\n tbody.append(tr)\n\n # This id is used for uniquely identifying\n # a particular contest in js\n button_id = 1\n for i in upcoming:\n\n if i[\"Platform\"] in (\"TOPCODER\", \"OTHER\"):\n continue\n\n start_time = datetime.datetime.strptime(i[\"StartTime\"],\n \"%a, %d %b %Y %H:%M\")\n tr = TR(_id=\"contest-\" + str(button_id))\n tr.append(TD(i[\"Name\"]))\n tr.append(TD(i[\"Platform\"].capitalize()))\n tr.append(TD(str(start_time)))\n\n duration = i[\"Duration\"]\n duration = duration.replace(\" days\", \"d\")\n duration = duration.replace(\" day\", \"d\")\n tr.append(TD(duration))\n tr.append(TD(A(I(_class=\"fa fa-external-link-square fa-lg\"),\n _class=\"btn-floating btn-small green accent-4 tooltipped\",\n _href=i[\"url\"],\n data={\"position\": \"left\",\n \"tooltip\": \"Contest Link\",\n \"delay\": \"50\"},\n _target=\"_blank\")))\n tr.append(TD(BUTTON(I(_class=\"fa fa-calendar-plus-o\"),\n _class=\"btn-floating btn-small orange accent-4 tooltipped\",\n data={\"position\": \"left\",\n \"tooltip\": \"Set Reminder to Google Calendar\",\n \"delay\": \"50\"},\n _id=\"set-reminder-\" + str(button_id))))\n tbody.append(tr)\n button_id += 1\n\n table.append(tbody)\n return dict(table=table, upcoming=upcoming)", "metadata": "root.contests", "header": "['module', '___EOS___']", "index": 318 }, { "content": "@auth.requires_login()\ndef submissions():\n \"\"\"\n Retrieve submissions of the logged-in user\n \"\"\"\n\n if len(request.args) == 0:\n active = \"1\"\n else:\n active = request.args[0]\n\n cftable = db.custom_friend\n ftable = db.friends\n stable = db.submission\n atable = db.auth_user\n\n # Get all the friends/custom friends of the logged-in user\n friends, cusfriends = utilities.get_friends(session[\"user_id\"])\n\n # The Original IDs of duplicate custom_friends\n custom_friends = []\n for cus_id in cusfriends:\n if cus_id[1] == None:\n custom_friends.append(cus_id[0])\n else:\n custom_friends.append(cus_id[1])\n\n query = (stable.user_id.belongs(friends)) | \\\n (stable.custom_user_id.belongs(custom_friends))\n total_count = db(query).count()\n\n PER_PAGE = current.PER_PAGE\n count = total_count / PER_PAGE\n if total_count % PER_PAGE:\n count += 1\n\n if request.extension == \"json\":\n return dict(count=count,\n total_rows=1)\n\n offset = PER_PAGE * (int(active) - 1)\n # Retrieve only some number of submissions from the offset\n rows = db(query).select(orderby=~db.submission.time_stamp,\n limitby=(offset, offset + PER_PAGE))\n\n table = utilities.render_table(rows, cusfriends)\n return dict(table=table,\n friends=friends,\n cusfriends=cusfriends,\n total_rows=len(rows))", "metadata": "root.submissions", "header": "['module', '___EOS___']", "index": 1077 } ]

[ { "span": "end_date ", "start_line": 328, "start_column": 4, "end_line": 328, "end_column": 12 }, { "span": "contests ", "start_line": 339, "start_column": 4, "end_line": 339, "end_column": 12 }, { "span": "cal ", "start_line": 340, "start_column": 4, "end_line": 340, "end_column": 7 }, { "span": "cftable ", "start_line": 1088, "start_column": 4, "end_line": 1088, "end_column": 11 }, { "span": "ftable ", "start_line": 1089, "start_column": 4, "end_line": 1089, "end_column": 10 }, { "span": "atable ", "start_line": 1091, "start_column": 4, "end_line": 1091, "end_column": 10 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "__author__ = 'atlanmod'\n\nimport mysql.connector\nfrom mysql.connector import errorcode\nfrom datetime import datetime\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class InitDbSchema():\n\n\n\n\n\n\n\n\n", "metadata": "root.InitDbSchema", "header": "['module', '___EOS___']", "index": 7 }, { "content": " def __init__(self, db_name, logger):\n self.logger = logger\n self.DB_NAME = db_name\n\n CONFIG = {\n 'user': 'root',\n 'password': 'root',\n 'host': 'localhost',\n 'port': '3306',\n 'raise_on_warnings': False,\n 'charset': 'utf8',\n 'buffered': True\n }\n\n self.cnx = mysql.connector.connect(**CONFIG)", "metadata": "root.InitDbSchema.__init__", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 11 }, { "content": " def init_database(self):\n self.init_tables()\n self.init_views()\n self.init_functions()\n self.init_stored_procedures()", "metadata": "root.InitDbSchema.init_database", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 27 }, { "content": " def init_views(self):\n cursor = self.cnx.cursor()\n\n num_files_deleted = \"\"\"\n CREATE VIEW num_files_deleted AS\n SELECT COUNT(DISTINCT fm.file_id) AS value FROM file_modification fm WHERE fm.status = \"deleted\";\n \"\"\"\n\n num_files_present = \"\"\"\n CREATE VIEW num_files_present AS\n SELECT (COUNT(*) - value) AS value\n FROM file f JOIN num_files_deleted nfd;\n \"\"\"\n\n num_branches = \"\"\"\n CREATE VIEW num_branches AS\n SELECT COUNT(*) as value\n FROM reference r;\n \"\"\"\n\n number_file_modification_per_commit = \"\"\"\n CREATE VIEW number_file_modification_per_commit AS\n SELECT COUNT(DISTINCT fm.file_id) as value\n FROM file_modification fm\n GROUP BY fm.commit_id;\n \"\"\"\n\n avg_number_file_modification_per_commit = \"\"\"\n CREATE VIEW avg_number_file_modification_per_commit AS\n SELECT AVG(value) AS value\n FROM number_file_modification_per_commit;\n \"\"\"\n\n num_empty_lines_deleted_files = \"\"\"\n CREATE VIEW num_empty_lines_deleted_files AS\n SELECT COUNT(*) AS value\n FROM line_detail ld, file_modification fm\n WHERE ld.file_modification_id = fm.id AND fm.status = \"deleted\" AND ld.is_empty = 1;\n \"\"\"\n\n num_empty_lines_present_files = \"\"\"\n CREATE VIEW num_empty_lines_present_files AS\n SELECT (COUNT(*) - value) AS value\n FROM line_detail ld, file_modification fm\n JOIN num_empty_lines_deleted_files neldf\n WHERE ld.file_modification_id = fm.id AND ld.is_empty = 1;\n \"\"\"\n\n num_commented_lines_deleted_files = \"\"\"\n CREATE VIEW num_commented_lines_deleted_files AS\n SELECT COUNT(*) AS value\n FROM line_detail ld, file_modification fm\n WHERE ld.file_modification_id = fm.id AND fm.status = \"deleted\" AND (ld.is_commented = 1 OR ld.is_partially_commented = 1);\n \"\"\"\n\n num_commented_lines_present_files = \"\"\"\n CREATE VIEW num_commented_lines_present_files AS\n SELECT (COUNT(*) - value) as value\n FROM line_detail ld, file_modification fm\n JOIN num_commented_lines_deleted_files ncldf\n WHERE ld.file_modification_id = fm.id AND (ld.is_commented = 1 OR ld.is_partially_commented = 1);\n \"\"\"\n\n num_lines_deleted_files = \"\"\"\n CREATE VIEW num_lines_deleted_files AS\n SELECT COUNT(*) AS value\n FROM line_detail ld, file_modification fm\n WHERE ld.file_modification_id = fm.id AND fm.status = \"deleted\";\n \"\"\"\n\n num_lines_present_files = \"\"\"\n CREATE VIEW num_lines_present_files AS\n SELECT (COUNT(*) - value) as value\n FROM line_detail ld, file_modification fm\n JOIN num_lines_deleted_files nldf\n WHERE ld.file_modification_id = fm.id;\n \"\"\"\n\n num_distinct_commits = \"\"\"\n CREATE VIEW num_distinct_commits AS\n SELECT COUNT(*) as value FROM commit c;\n \"\"\"\n\n num_commits_in_references = \"\"\"\n CREATE VIEW num_commits_in_references AS\n SELECT COUNT(*) as value FROM commit_in_reference cin;\n \"\"\"\n\n num_developers = \"\"\"\n CREATE VIEW num_developers AS\n SELECT COUNT(*) as value FROM developer d;\n \"\"\"\n\n repo_metrics = \"\"\"\n CREATE VIEW repo_metrics AS\n SELECT\n a.value as num_files_deleted,\n b.value as num_files_present,\n c.value as num_branches,\n d.value as avg_number_file_modification_per_commit,\n e.value as num_empty_lines_deleted_files,\n f.value as num_empty_lines_present_files,\n g.value as num_commented_lines_deleted_files,\n h.value as num_commented_lines_present_files,\n i.value as num_lines_deleted_files,\n l.value as num_lines_present_files,\n m.value as num_distinct_commits,\n n.value as num_commits_in_references,\n o.value as num_developers\n FROM num_files_deleted a\n JOIN num_files_present b\n JOIN num_branches c\n JOIN avg_number_file_modification_per_commit d\n JOIN num_empty_lines_deleted_files e\n JOIN num_empty_lines_present_files f\n JOIN num_commented_lines_deleted_files g\n JOIN num_commented_lines_present_files h\n JOIN num_lines_deleted_files i\n JOIN num_lines_present_files l\n JOIN num_distinct_commits m\n JOIN num_commits_in_references n\n JOIN num_developers o;\n \"\"\"\n\n developer_weekly_activity_metrics = \"\"\"\n CREATE VIEW developer_activity_metrics AS\n SELECT\n YEAR(c.authored_date) as year,\n WEEK(c.authored_date) as week,\n d.name as author,\n SUM(fm.additions) as insertions,\n SUM(fm.deletions) as deletions\n FROM\n developer d,\n commit c,\n file_modification fm\n WHERE\n c.author_id = d.id AND c.id = fm.commit_id\n GROUP BY\n WEEK(c.authored_date), YEAR(c.authored_date), d.id;\n \"\"\"\n\n totalChanges = \"\"\"\n CREATE VIEW totalChanges AS\n SELECT COUNT(DISTINCT fm.id) AS value FROM file_modification fm;\n \"\"\"\n\n num_commented_lines_per_author = \"\"\"\n CREATE VIEW num_commented_lines_per_author AS\n SELECT c.author_id, COUNT(*) as value\n FROM line_detail ld, file_modification fm, commit c\n WHERE ld.file_modification_id = fm.id AND c.id = fm.commit_id AND type = 'addition' AND (ld.is_commented = 1 OR ld.is_partially_commented = 1)\n GROUP BY c.author_id;\n \"\"\"\n\n num_total_commented_lines = \"\"\"\n CREATE VIEW num_total_commented_lines AS\n SELECT COUNT(*) as value\n FROM line_detail ld, file_modification fm, commit c\n WHERE ld.file_modification_id = fm.id AND c.id = fm.commit_id AND type = 'addition' AND (ld.is_commented = 1 OR ld.is_partially_commented = 1);\n \"\"\"\n\n developer_project_activity_metrics = \"\"\"\n CREATE VIEW developer_project_activity_metrics AS\n SELECT\n d.name as author,\n COUNT(DISTINCT c.id) as commits,\n SUM(fm.additions) as insertions,\n SUM(fm.deletions) as deletions,\n ROUND((COUNT(DISTINCT fm.id)/total.value)*100, 2) as perc_changes,\n nclpa.value AS num_commented_lines_per_author,\n ROUND((nclpa.value/ntcl.value)*100, 2) AS perc_commented_lines\n FROM\n developer d,\n commit c,\n file_modification fm\n JOIN\n totalChanges as total\n JOIN\n num_commented_lines_per_author as nclpa\n JOIN\n num_total_commented_lines as ntcl\n WHERE\n c.author_id = d.id AND c.id = fm.commit_id AND nclpa.author_id = d.id\n GROUP BY\n d.id;\n \"\"\"\n\n cursor.execute(num_files_deleted)\n cursor.execute(num_files_present)\n cursor.execute(num_branches)\n cursor.execute(number_file_modification_per_commit)\n cursor.execute(avg_number_file_modification_per_commit)\n cursor.execute(num_empty_lines_deleted_files)\n cursor.execute(num_empty_lines_present_files)\n cursor.execute(num_commented_lines_deleted_files)\n cursor.execute(num_commented_lines_present_files)\n cursor.execute(num_lines_deleted_files)\n cursor.execute(num_lines_present_files)\n cursor.execute(num_distinct_commits)\n cursor.execute(num_commits_in_references)\n cursor.execute(num_developers)\n cursor.execute(repo_metrics)\n\n cursor.execute(developer_weekly_activity_metrics)\n\n cursor.execute(totalChanges)\n cursor.execute(num_commented_lines_per_author)\n cursor.execute(num_total_commented_lines)\n cursor.execute(developer_project_activity_metrics)\n\n cursor.close()", "metadata": "root.InitDbSchema.init_views", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 33 }, { "content": " def init_functions(self):\n cursor = self.cnx.cursor()\n\n get_file_history = \"\"\"\n CREATE DEFINER=`root`@`localhost` FUNCTION `get_file_history`(_file_id INT) RETURNS text CHARSET utf8\n BEGIN\n DECLARE _file_ids TEXT DEFAULT _file_id;\n DECLARE _prev INT;\n DECLARE _aux INT;\n\n SELECT previous_file_id INTO _prev\n FROM file_renamed\n WHERE current_file_id = _file_id;\n\n /* execute the loop until a previous version is found */\n WHILE _prev IS NOT NULL DO\n /* add the previous version file id to the _file_ids variable */\n SET _file_ids = CONCAT(_file_ids, ',' , _prev);\n\n SET _aux = _prev;\n SET _prev = NULL;\n\n SELECT previous_file_id INTO _prev\n FROM file_renamed\n WHERE current_file_id = _aux;\n\n END WHILE;\n RETURN _file_ids;\n END\"\"\"\n\n levenshtein_distance = \"\"\"\n CREATE DEFINER=`root`@`localhost` FUNCTION `levenshtein_distance`(s1 VARCHAR(255) CHARACTER SET utf8, s2 VARCHAR(255) CHARACTER SET utf8) RETURNS int(11)\n DETERMINISTIC\n BEGIN\n DECLARE s1_len, s2_len, i, j, c, c_temp, cost INT;\n DECLARE s1_char CHAR CHARACTER SET utf8;\n -- max strlen=255 for this function\n DECLARE cv0, cv1 VARBINARY(256);\n\n SET s1_len = CHAR_LENGTH(s1),\n s2_len = CHAR_LENGTH(s2),\n cv1 = 0x00,\n j = 1,\n i = 1,\n c = 0;\n\n IF (s1 = s2) THEN\n RETURN (0);\n ELSEIF (s1_len = 0) THEN\n RETURN (s2_len);\n ELSEIF (s2_len = 0) THEN\n RETURN (s1_len);\n END IF;\n\n WHILE (j <= s2_len) DO\n SET cv1 = CONCAT(cv1, CHAR(j)),\n j = j + 1;\n END WHILE;\n\n WHILE (i <= s1_len) DO\n SET s1_char = SUBSTRING(s1, i, 1),\n c = i,\n cv0 = CHAR(i),\n j = 1;\n\n WHILE (j <= s2_len) DO\n SET c = c + 1,\n cost = IF(s1_char = SUBSTRING(s2, j, 1), 0, 1);\n\n SET c_temp = ORD(SUBSTRING(cv1, j, 1)) + cost;\n IF (c > c_temp) THEN\n SET c = c_temp;\n END IF;\n\n SET c_temp = ORD(SUBSTRING(cv1, j+1, 1)) + 1;\n IF (c > c_temp) THEN\n SET c = c_temp;\n END IF;\n\n SET cv0 = CONCAT(cv0, CHAR(c)),\n j = j + 1;\n END WHILE;\n\n SET cv1 = cv0,\n i = i + 1;\n END WHILE;\n\n RETURN (c);\n END\"\"\"\n\n soundex_match = \"\"\"\n CREATE DEFINER=`root`@`localhost` FUNCTION `soundex_match`(s1 VARCHAR(255) CHARACTER SET utf8, s2 VARCHAR(255) CHARACTER SET utf8) RETURNS int(1)\n DETERMINISTIC\n BEGIN\n DECLARE _result INT DEFAULT 0;\n IF SOUNDEX(s1) = SOUNDEX(s2) THEN\n SET _result = 1;\n END IF;\n RETURN _result;\n END\"\"\"\n\n cursor.execute(get_file_history)\n cursor.execute(levenshtein_distance)\n cursor.execute(soundex_match)\n cursor.close()", "metadata": "root.InitDbSchema.init_functions", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 246 }, { "content": " def init_stored_procedures(self):\n cursor = self.cnx.cursor()\n\n get_file_version = \"\"\"\n CREATE DEFINER=`root`@`localhost` PROCEDURE `get_file_version`(IN _file_id INTEGER, _date TEXT, by_line BOOL)\n BEGIN\n DECLARE invar INTEGER;\n DECLARE _file_ids TEXT;\n\n /* retrieve the previous version of the file */\n SET @invar = _file_id;\n PREPARE stmt FROM 'SELECT get_file_history(id) INTO @_file_ids FROM file WHERE id = ?';\n EXECUTE stmt using @invar;\n\n /* returns either the content per line or the compacted version */\n IF by_line THEN\n CALL get_file_history_by_line(@_file_ids, _date);\n ELSE\n CALL get_file_history_compact(@_file_ids, _date);\n END IF;\n END\"\"\"\n\n get_file_version_by_line = \"\"\"\n CREATE DEFINER=`root`@`localhost` PROCEDURE `get_file_version_by_line`(IN _file_ids TEXT, IN _date TEXT)\n BEGIN\n DECLARE _query TEXT DEFAULT\n CONCAT('SELECT SUBSTRING(add_cont, 2) as line_content\n FROM (\n SELECT ld.line_number, max(c.committed_date) AS last_committed_date\n FROM file_modification fm\n JOIN line_detail ld\n ON fm.id = ld.file_modification_id\n JOIN commit c\n ON fm.commit_id = c.id\n WHERE fm.file_id IN (', _file_ids, ') AND committed_date <= \\\\'', _date , '\\\\'\n group by ld.line_number) as last_mod\n left join\n (\n SELECT ld.line_number AS line, ld.content AS add_cont, c.committed_date as date\n FROM file_modification fm\n JOIN line_detail ld\n ON fm.id = ld.file_modification_id\n JOIN commit c\n ON fm.commit_id = c.id\n WHERE fm.file_id IN (', _file_ids, ') AND ld.type = \"addition\" AND committed_date <= \\\\'', _date, '\\\\'\n ) AS _add\n ON last_mod.line_number = _add.line AND last_mod.last_committed_date = _add.date\n WHERE add_cont IS NOT NULL\n ORDER BY last_mod.line_number;');\n DECLARE sql_query TEXT;\n SET @sql_query = _query;\n PREPARE stmt FROM @sql_query;\n EXECUTE stmt;\n DEALLOCATE PREPARE stmt;\n\n END\"\"\"\n\n get_file_version_compact = \"\"\"\n CREATE DEFINER=`root`@`localhost` PROCEDURE `get_file_version_compact`(IN _file_ids TEXT, IN _date TEXT)\n BEGIN\n DECLARE _query TEXT DEFAULT\n CONCAT('CREATE TEMPORARY TABLE _tmp AS\n SELECT SUBSTRING(add_cont, 2) as line_content\n FROM (\n SELECT ld.line_number, max(c.committed_date) AS last_committed_date\n FROM file_modification fm\n JOIN line_detail ld\n ON fm.id = ld.file_modification_id\n JOIN commit c\n ON fm.commit_id = c.id\n WHERE fm.file_id IN (', _file_ids, ') AND committed_date <= \\\\'', _date , '\\\\'\n group by ld.line_number) as last_mod\n left join\n (\n SELECT ld.line_number AS line, ld.content AS add_cont, c.committed_date as date\n FROM file_modification fm\n JOIN line_detail ld\n ON fm.id = ld.file_modification_id\n JOIN commit c\n ON fm.commit_id = c.id\n WHERE fm.file_id IN (', _file_ids, ') AND ld.type = \"addition\" AND committed_date <= \\\\'', _date, '\\\\'\n ) AS _add\n ON last_mod.line_number = _add.line AND last_mod.last_committed_date = _add.date\n WHERE add_cont IS NOT NULL\n ORDER BY last_mod.line_number;');\n DECLARE sql_query TEXT;\n DECLARE content LONGBLOB;\n DECLARE _txt BLOB;\n DECLARE done INT DEFAULT FALSE;\n DECLARE cur CURSOR FOR SELECT * FROM _tmp;\n DECLARE CONTINUE HANDLER FOR NOT FOUND SET done = 1;\n\n /* drop _tmp table if exists */\n DROP TABLE IF EXISTS _tmp;\n\n /* create _tmp table */\n SET @sql_query = _query;\n PREPARE stmt FROM @sql_query;\n EXECUTE stmt;\n DEALLOCATE PREPARE stmt;\n\n /* iterate over the lines and fill the variable content */\n OPEN cur;\n FETCH cur INTO _txt;\n\n SET content = _txt;\n\n read_loop: LOOP\n FETCH cur into _txt;\n IF done THEN\n LEAVE read_loop;\n END IF;\n /* concat the line content to the variable content */\n SET content = CONCAT(content, '\\\\n', COALESCE(_txt, ''));\n END LOOP;\n\n CLOSE cur;\n\n /* drop _tmp table if exists */\n DROP TABLE IF EXISTS _tmp;\n /* return the conent variable */\n SELECT content;\n\n END\n \"\"\"\n\n cursor.execute(get_file_version)\n cursor.execute(get_file_version_by_line)\n cursor.execute(get_file_version_compact)\n\n cursor.close()", "metadata": "root.InitDbSchema.init_stored_procedures", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 352 }, { "content": " def init_tables(self):\n cursor = self.cnx.cursor()\n\n drop_database_if_exists = \"DROP DATABASE IF EXISTS \" + self.DB_NAME\n cursor.execute(drop_database_if_exists)\n\n create_database = \"CREATE DATABASE \" + self.DB_NAME\n cursor.execute(create_database)\n\n cursor.execute(\"set global innodb_file_format = BARRACUDA\")\n cursor.execute(\"set global innodb_file_format_max = BARRACUDA\")\n cursor.execute(\"set global innodb_large_prefix = ON\")\n cursor.execute(\"set global character_set_server = utf8\")\n\n create_table_repositories = \"CREATE TABLE \" + self.DB_NAME + \".repository( \" \\\n \"id int(20) AUTO_INCREMENT PRIMARY KEY, \" \\\n \"name varchar(255), \" \\\n \"INDEX n (name), \" \\\n \"CONSTRAINT name UNIQUE (name)\" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_references = \"CREATE TABLE \" + self.DB_NAME + \".reference( \" \\\n \"id int(20) AUTO_INCREMENT PRIMARY KEY, \" \\\n \"repo_id int(20), \" \\\n \"name varchar(255), \" \\\n \"type varchar(255), \" \\\n \"INDEX n (name), \" \\\n \"CONSTRAINT name UNIQUE (name) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_developers = \"CREATE TABLE \" + self.DB_NAME + \".developer( \" \\\n \"id int(20) AUTO_INCREMENT PRIMARY KEY, \" \\\n \"name varchar(256), \" \\\n \"email varchar(256), \" \\\n \"INDEX ne (name, email), \" \\\n \"CONSTRAINT naem UNIQUE (name, email) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_commits = \"CREATE TABLE \" + self.DB_NAME + \".commit(\" \\\n \"id int(20) AUTO_INCREMENT PRIMARY KEY, \" \\\n \"repo_id int(20), \" \\\n \"sha varchar(512), \" \\\n \"message varchar(512), \" \\\n \"author_id int(20), \" \\\n \"committer_id int(20), \" \\\n \"authored_date timestamp, \" \\\n \"committed_date timestamp, \" \\\n \"size int(20), \" \\\n \"INDEX sha (sha), \" \\\n \"CONSTRAINT s UNIQUE (sha) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_commit_parent = \"CREATE TABLE \" + self.DB_NAME + \".commit_parent(\" \\\n \"repo_id int(20), \" \\\n \"commit_id int(20), \" \\\n \"commit_sha varchar(512), \" \\\n \"parent_id int(20), \" \\\n \"parent_sha varchar(512), \" \\\n \"PRIMARY KEY copa (repo_id, commit_id, parent_id), \" \\\n \"INDEX csha (commit_sha), \" \\\n \"INDEX psha (parent_sha), \" \\\n \"CONSTRAINT cshapsha UNIQUE (repo_id, commit_id, parent_sha) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_commits2reference = \"CREATE TABLE \" + self.DB_NAME + \".commit_in_reference(\" \\\n \"repo_id int(20), \" \\\n \"commit_id int(20), \" \\\n \"ref_id int(20), \" \\\n \"PRIMARY KEY core (commit_id, ref_id) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_files = \"CREATE TABLE \" + self.DB_NAME + \".file( \" \\\n \"id int(20) AUTO_INCREMENT PRIMARY KEY, \" \\\n \"repo_id int(20), \" \\\n \"name varchar(255), \" \\\n \"ext varchar(255), \" \\\n \"ref_id int(20), \" \\\n \"INDEX rrn (repo_id, ref_id, name), \" \\\n \"CONSTRAINT rerena UNIQUE (repo_id, ref_id, name) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_file_renamed = \"CREATE TABLE \" + self.DB_NAME + \".file_renamed ( \" \\\n \"repo_id int(20), \" \\\n \"current_file_id int(20), \" \\\n \"previous_file_id int(20), \" \\\n \"PRIMARY KEY rena (current_file_id, previous_file_id), \" \\\n \"INDEX current (current_file_id), \" \\\n \"INDEX previous (previous_file_id) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_file_modifications = \"CREATE TABLE \" + self.DB_NAME + \".file_modification( \" \\\n \"id int(20) AUTO_INCREMENT PRIMARY KEY, \" \\\n \"commit_id int(20), \" \\\n \"file_id int(20), \" \\\n \"status varchar(10), \" \\\n \"additions numeric(10), \" \\\n \"deletions numeric(10), \" \\\n \"changes numeric(10), \" \\\n \"patch longblob, \" \\\n \"INDEX c (commit_id), \" \\\n \"INDEX f (file_id) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n create_table_lines = \"CREATE TABLE \" + self.DB_NAME + \".line_detail( \" \\\n \"file_modification_id int(11),\" \\\n \"type varchar(25), \" \\\n \"line_number numeric(20), \" \\\n \"is_commented numeric(1), \" \\\n \"is_partially_commented numeric(1), \" \\\n \"is_empty numeric(1), \" \\\n \"content longblob, \" \\\n \"PRIMARY KEY fityli (file_modification_id, type, line_number), \" \\\n \"INDEX fi (file_modification_id) \" \\\n \") ENGINE=InnoDB DEFAULT CHARSET=utf8 ROW_FORMAT=DYNAMIC;\"\n\n use_database = \"USE \" + self.DB_NAME\n\n cursor.execute(create_table_repositories)\n cursor.execute(create_table_references)\n cursor.execute(create_table_developers)\n cursor.execute(create_table_commits)\n cursor.execute(create_table_commit_parent)\n cursor.execute(create_table_commits2reference)\n cursor.execute(create_table_files)\n cursor.execute(create_table_file_renamed)\n cursor.execute(create_table_file_modifications)\n cursor.execute(create_table_lines)\n cursor.execute(use_database)\n cursor.close()\n return", "metadata": "root.InitDbSchema.init_tables", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 484 }, { "content": " def execute(self):\n\n start_time = datetime.now()\n self.init_database()\n self.cnx.close()\n end_time = datetime.now()\n\n minutes_and_seconds = divmod((end_time-start_time).total_seconds(), 60)\n self.logger.info(\"InitDbSchema: process finished after \" + str(minutes_and_seconds[0])\n + \" minutes and \" + str(round(minutes_and_seconds[1], 1)) + \" secs\")\n return", "metadata": "root.InitDbSchema.execute", "header": "['class', 'InitDbSchema', '(', ')', ':', '___EOS___']", "index": 615 } ]

[ { "span": "from mysql.connector import errorcode", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 37 } ]

[]

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"\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "[SEP]_", "class_", "Ini", "t", "Db", "Schema_", "(_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "def_", "\\u\\u", "init\\u\\u_", "(_", "self_", ",_", "db", "\\u", "name_", ",_", "logger_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "logger_", "=_", "logger_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "DB", "\\u", "NAME_", "=_", "db", "\\u", "name_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "CONFIG_", "=_", "{_", "\\u\\u\\uNL\\u\\u\\u_", "'", "user", "'_", ":_", "'", "root", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "password", "'_", ":_", "'", "root", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "host", "'_", ":_", "'", "local", "host", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "port", "'_", ":_", "'", "3306", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "raise", "\\u", "on", "\\u", "warn", "ings", "'_", ":_", "False_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "charset", "'_", ":_", "'", "utf", "8", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "buffered", "'_", ":_", "True_", "\\u\\u\\uNL\\u\\u\\u_", "}_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "self_", "._", "cnx_", "=_", "mysql_", "._", "connector_", "._", "connect_", "(_", "**_", "CONFIG_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "class_", "Ini", "t", "Db", "Schema_", "(_", ")_", ":_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "init", "\\u", "database_", "(_", "self_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "self_", "._", "init", "\\u", "tables_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "init", "\\u", "views_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "init", "\\u", "functions_", "(_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "self_", "._", "init", "\\u", "store", "d\\u", "procedure", "s_", 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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 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[ { "content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n#\n# This file is part of Karesansui Core.\n#\n# Copyright (C) 2009-2012 HDE, Inc.\n#\n# Permission is hereby granted, free of charge, to any person obtaining a copy\n# of this software and associated documentation files (the \"Software\"), to deal\n# in the Software without restriction, including without limitation the rights\n# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell\n# copies of the Software, and to permit persons to whom the Software is\n# furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included in\n# all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE\n# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,\n# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN\n# THE SOFTWARE.\n#\n\n\"\"\" \n<comment-ja>\n</comment-ja>\n<comment-en>\nRead xml of libvirt's capabilities and load to object.\n!!! Notice: this is read-only parser. !!!\n</comment-en>\n\n@file: config_capabilities.py\n\n@author: Taizo ITO <taizo@karesansui-project.info>\n\nxml sample:\n-----------------------------------------------------------\n<capabilities>\n <host>\n <cpu>\n <arch>x86_64</arch>\n <model>pentium3</model>\n <topology sockets='1' cores='1' threads='1'/>\n <feature name='syscall'/>\n <feature name='hypervisor'/>\n <feature name='acpi'/>\n <feature name='apic'/>\n </cpu>\n <migration_features>\n <live/>\n <uri_transports>\n <uri_transport>tcp</uri_transport>\n </uri_transports>\n </migration_features>\n </host>\n <guest>\n <os_type>hvm</os_type>\n <arch name='i686'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu</emulator>\n <machine>pc-0.12</machine>\n <machine canonical='pc-0.12'>pc</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n <features>\n <cpuselection/>\n <pae/>\n <nonpae/>\n <acpi default='on' toggle='yes'/>\n <apic default='on' toggle='no'/>\n </features>\n </guest>\n <guest>\n <os_type>hvm</os_type>\n <arch name='x86_64'>\n <wordsize>64</wordsize>\n <emulator>/usr/bin/qemu-system-x86_64</emulator>\n <machine>pc-0.12</machine>\n <machine canonical='pc-0.12'>pc</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n <features>\n <cpuselection/>\n <acpi default='on' toggle='yes'/>\n <apic default='on' toggle='no'/>\n </features>\n </guest>\n</capabilities>\n-----------------------------------------------------------\n\n\"\"\"\n\nimport os\nimport time\n\nfrom StringIO import StringIO\nimport errno\n\nimport karesansui\n\nfrom karesansui.lib.utils import get_xml_xpath as XMLXpath, \\\n get_nums_xml_xpath as XMLXpathNum, \\\n get_xml_parse as XMLParse, \\\n r_chgrp, r_chmod, preprint_r\n\n\n\nif __name__ == '__main__':\n string = \"\"\"<capabilities>\n\n <host>\n <cpu>\n <arch>x86_64</arch>\n <model>pentium3</model>\n <topology sockets='1' cores='1' threads='1'/>\n <feature name='lahf_lm'/>\n <feature name='lm'/>\n <feature name='nx'/>\n <feature name='syscall'/>\n <feature name='hypervisor'/>\n <feature name='sse4.1'/>\n <feature name='cx16'/>\n <feature name='ssse3'/>\n <feature name='pni'/>\n <feature name='ss'/>\n <feature name='sse2'/>\n <feature name='acpi'/>\n <feature name='ds'/>\n <feature name='clflush'/>\n <feature name='apic'/>\n </cpu>\n <migration_features>\n <live/>\n <uri_transports>\n <uri_transport>tcp</uri_transport>\n </uri_transports>\n </migration_features>\n </host>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='i686'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu</emulator>\n <machine>pc-0.12</machine>\n <machine canonical='pc-0.12'>pc</machine>\n <machine>pc-0.11</machine>\n <machine>pc-0.10</machine>\n <machine>isapc</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n <features>\n <cpuselection/>\n <pae/>\n <nonpae/>\n <acpi default='on' toggle='yes'/>\n <apic default='on' toggle='no'/>\n </features>\n </guest>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='x86_64'>\n <wordsize>64</wordsize>\n <emulator>/usr/bin/qemu-system-x86_64</emulator>\n <machine>pc-0.12</machine>\n <machine canonical='pc-0.12'>pc</machine>\n <machine>pc-0.11</machine>\n <machine>pc-0.10</machine>\n <machine>isapc</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n <features>\n <cpuselection/>\n <acpi default='on' toggle='yes'/>\n <apic default='on' toggle='no'/>\n </features>\n </guest>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='arm'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu-system-arm</emulator>\n <machine>integratorcp</machine>\n <machine>syborg</machine>\n <machine>musicpal</machine>\n <machine>mainstone</machine>\n <machine>n800</machine>\n <machine>n810</machine>\n <machine>cheetah</machine>\n <machine>sx1</machine>\n <machine>sx1-v1</machine>\n <machine>tosa</machine>\n <machine>akita</machine>\n <machine>spitz</machine>\n <machine>borzoi</machine>\n <machine>terrier</machine>\n <machine>connex</machine>\n <machine>verdex</machine>\n <machine>lm3s811evb</machine>\n <machine>lm3s6965evb</machine>\n <machine>realview-eb</machine>\n <machine>realview-eb-mpcore</machine>\n <machine>realview-pb-a8</machine>\n <machine>realview-pbx-a9</machine>\n <machine>versatilepb</machine>\n <machine>versatileab</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n </guest>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='mips'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu-system-mips</emulator>\n <machine>malta</machine>\n <machine>mipssim</machine>\n <machine>magnum</machine>\n <machine>pica61</machine>\n <machine>mips</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n </guest>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='mipsel'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu-system-mipsel</emulator>\n <machine>malta</machine>\n <machine>mipssim</machine>\n <machine>magnum</machine>\n <machine>pica61</machine>\n <machine>mips</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n </guest>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='sparc'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu-system-sparc</emulator>\n <machine>SS-5</machine>\n <machine>SS-10</machine>\n <machine>SS-600MP</machine>\n <machine>SS-20</machine>\n <machine>Voyager</machine>\n <machine>LX</machine>\n <machine>SS-4</machine>\n <machine>SPARCClassic</machine>\n <machine>SPARCbook</machine>\n <machine>SS-1000</machine>\n <machine>SS-2000</machine>\n <machine>SS-2</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n </guest>\n\n <guest>\n <os_type>hvm</os_type>\n <arch name='ppc'>\n <wordsize>32</wordsize>\n <emulator>/usr/bin/qemu-system-ppc</emulator>\n <machine>g3beige</machine>\n <machine>mpc8544ds</machine>\n <machine>bamboo</machine>\n <machine>ref405ep</machine>\n <machine>taihu</machine>\n <machine>mac99</machine>\n <machine>prep</machine>\n <machine>xenpv</machine>\n <domain type='qemu'>\n </domain>\n </arch>\n </guest>\n\n</capabilities>\n\"\"\"\n\n param = CapabilitiesConfigParam()\n param.load_xml_config(string)\n\n preprint_r(param.host)\n preprint_r(param.guest) \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class KaresasnuiCapabilitiesConfigParamException(karesansui.KaresansuiLibException):\n pass", "metadata": "root.KaresasnuiCapabilitiesConfigParamException", "header": "['module', '___EOS___']", "index": 112 }, { "content": "class CapabilitiesConfigParam:\n\n\n\n\n", "metadata": "root.CapabilitiesConfigParam", "header": "['module', '___EOS___']", "index": 115 }, { "content": " def __init__(self):\n self.host = {}\n self.guest = []", "metadata": "root.CapabilitiesConfigParam.__init__", "header": "['class', 'CapabilitiesConfigParam', ':', '___EOS___']", "index": 117 }, { "content": " def get_host_cpu_arch(self):\n try:\n return self.host['cpu']['arch']\n except:\n return None", "metadata": "root.CapabilitiesConfigParam.get_host_cpu_arch", "header": "['class', 'CapabilitiesConfigParam', ':', '___EOS___']", "index": 121 }, { "content": " def load_xml_config(self,string):\n\n doc = XMLParse(string)\n xpath_prefix = \"/capabilities\"\n\n ###################\n # host section\n host_xpath = \"%s/host\" % xpath_prefix\n host = {}\n\n # host - cpu section\n host_cpu_xpath = \"%s/cpu\" % host_xpath\n cpu = {}\n cpu['arch'] = XMLXpath(doc, '%s/arch/text()' % host_cpu_xpath)\n cpu['model'] = XMLXpath(doc, '%s/model/text()' % host_cpu_xpath)\n topology = {}\n topology['sockets'] = XMLXpath(doc, '%s/topology/@sockets' % host_cpu_xpath)\n topology['cores'] = XMLXpath(doc, '%s/topology/@cores' % host_cpu_xpath)\n topology['threads'] = XMLXpath(doc, '%s/topology/@threads' % host_cpu_xpath)\n cpu['topology'] = topology\n\n features = {}\n feature = []\n feature_num = XMLXpathNum(doc, '%s/feature' % host_cpu_xpath)\n for n in range(1, feature_num + 1):\n name = XMLXpath(doc, '%s/feature[%i]/@name' % (host_cpu_xpath, n,))\n feature.append(name)\n vmx = XMLXpath(doc, '%s/features/vmx' % host_cpu_xpath)\n features['feature'] = feature\n features['vmx'] = vmx\n cpu['feature'] = features\n\n host['cpu'] = cpu\n\n # host - migration_features section\n host_migration_features_xpath = \"%s/migration_features\" % host_xpath\n migration_features = {}\n\n uri_transports = []\n uri_transport_num = XMLXpathNum(doc,'%s/uri_transports/uri_transport' % host_migration_features_xpath)\n for n in range(1, uri_transport_num + 1):\n uri_transport = XMLXpath(doc,'%s/uri_transports/uri_transport/text()' % host_migration_features_xpath)\n uri_transports.append(uri_transport)\n live = XMLXpath(doc, '%s/live' % host_migration_features_xpath)\n migration_features['uri_transports'] = uri_transports\n migration_features['live'] = live\n\n host['migration_features'] = migration_features\n\n ###################\n # guest section\n guest_xpath = \"%s/guest\" % xpath_prefix\n guests = []\n\n guest_num = XMLXpathNum(doc,'%s' % guest_xpath)\n for n in range(1, guest_num + 1):\n guest = {}\n\n os_type = XMLXpath(doc, '%s[%i]/os_type/text()' % (guest_xpath,n,))\n\n arch = {}\n name = XMLXpath(doc, '%s[%i]/arch/@name' % (guest_xpath,n,))\n wordsize = XMLXpath(doc, '%s[%i]/arch/wordsize/text()' % (guest_xpath,n,))\n emulator = XMLXpath(doc, '%s[%i]/arch/emulator/text()' % (guest_xpath,n,))\n machines = []\n machine_num = XMLXpathNum(doc, '%s[%i]/arch/machine' % (guest_xpath,n,))\n for m in range(1, machine_num + 1):\n machine = XMLXpath(doc, '%s[%i]/arch/machine[%i]/text()' % (guest_xpath,n,m,))\n machines.append(machine)\n domain = {}\n type = XMLXpath(doc, '%s[%i]/arch/domain/@type' % (guest_xpath,n,))\n domain['type'] = type\n arch['name'] = name\n arch['wordsize'] = wordsize\n arch['emulator'] = emulator\n arch['machine'] = machines\n arch['domain'] = domain\n\n features = {}\n cpuselection = XMLXpath(doc, '%s[%i]/features/cpuselection' % (guest_xpath,n,))\n pae = XMLXpath(doc, '%s[%i]/features/pae' % (guest_xpath,n,))\n nonpae = XMLXpath(doc, '%s[%i]/features/nonpae' % (guest_xpath,n,))\n acpi = {}\n default = XMLXpath(doc, '%s[%i]/features/acpi/@default' % (guest_xpath,n,))\n toggle = XMLXpath(doc, '%s[%i]/features/acpi/@toggle' % (guest_xpath,n,))\n acpi['default'] = default\n acpi['toggle'] = toggle\n apic = {}\n default = XMLXpath(doc, '%s[%i]/features/apic/@default' % (guest_xpath,n,))\n toggle = XMLXpath(doc, '%s[%i]/features/apic/@toggle' % (guest_xpath,n,))\n apic['default'] = default\n apic['toggle'] = toggle\n features['acpi'] = acpi\n features['apic'] = apic\n\n guest['os_type'] = os_type\n guest['arch'] = arch\n guest['features'] = features\n guests.append(guest)\n\n self.host = host\n self.guest = guests\n\n return { \"host\" :self.host, \"guest\":self.guest }", "metadata": "root.CapabilitiesConfigParam.load_xml_config", "header": "['class', 'CapabilitiesConfigParam', ':', '___EOS___']", "index": 127 }, { "content": " def validate(self):\n pass", "metadata": "root.CapabilitiesConfigParam.validate", "header": "['class', 'CapabilitiesConfigParam', ':', '___EOS___']", "index": 233 } ]

[ { "span": "import os", "start_line": 99, "start_column": 0, "end_line": 99, "end_column": 9 }, { "span": "import time", "start_line": 100, "start_column": 0, "end_line": 100, "end_column": 11 }, { "span": "from StringIO import StringIO", "start_line": 102, "start_column": 0, "end_line": 102, "end_column": 29 }, { "span": "import errno", "start_line": 103, "start_column": 0, "end_line": 103, "end_column": 12 }, { "span": "from karesansui.lib.utils import get_xml_xpath as XMLXpath, \\\n get_nums_xml_xpath as XMLXpathNum, \\\n get_xml_parse as XMLParse, \\\n r_chgrp, r_chmod, preprint_r", "start_line": 107, "start_column": 0, "end_line": 110, "end_column": 33 } ]

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[ { "content": "def combine_a_ptr_to_interface(request, addr_pk, ptr_pk):\n \"\"\"\n When a PTR/AddressRecord have the same ip/name it's likely that they could\n become an interface attached to a system. This view (function) takes an\n AddressRecord (addr) and PTR (ptr) and using their data creates an\n StaticInterface. Finally, addr and ptr are deleted.\n \"\"\"\n addr = get_object_or_404(AddressRecord, pk=addr_pk)\n ptr = get_object_or_404(PTR, pk=ptr_pk)\n is_ajax = request.POST.get('is_ajax')\n system_hostname = request.POST.get('system_hostname')\n if is_ajax and system_hostname:\n system = None\n try:\n system = System.objects.get(hostname=system_hostname)\n except:\n try:\n system_hostname = re.sub('mozilla\\.[com|net|org]', '',\n system_hostname)\n system = System.objects.get(hostname=system_hostname)\n except:\n system = None\n if system:\n try:\n x = do_combine_a_ptr_to_interface(\n addr, ptr, system, mac_address=\"00:00:00:00:00:00\")\n (intr, addr_deleted, ptr_deleted) = x\n except ValidationError, e:\n return HttpResponse(json.dumps({'success': False, 'error':\n e.messages[0]}))\n ret_dict = {}\n ret_dict['success'] = True\n ret_dict['hostname'] = system.hostname\n ret_dict['id'] = system.id\n return HttpResponse(json.dumps(ret_dict))\n else:\n return HttpResponse(json.dumps({'success': False, 'error':\n 'Unable to find system'}))\n\n if request.method == \"POST\":\n form = CombineForm(request.POST)\n if form.is_valid():\n system = form.cleaned_data['system']\n try:\n x = do_combine_a_ptr_to_interface(addr, ptr, system)\n intr, addr_deleted, ptr_deleted = x\n return redirect(intr)\n except ValidationError, e:\n form.errors['__all__'] = ErrorList(e.messages)\n return render(request, 'static_intr/combine.html', {\n 'addr': addr,\n 'ptr': ptr,\n 'form': form\n })\n else:\n form = CombineForm()\n return render(request, 'static_intr/combine.html', {\n 'form': form,\n 'addr': addr,\n 'ptr': ptr,\n })", "metadata": "root.combine_a_ptr_to_interface", "header": "['module', '___EOS___']", "index": 75 }, { "content": "def create_static_interface(request, system_pk):\n # TODO, make sure the user has access to this system\n system = get_object_or_404(System, pk=system_pk)\n if request.method == 'POST':\n interface_form = StaticInterfaceForm(request.POST)\n interface_form.instance.system = system\n\n a, ptr, r = None, None, None\n if interface_form.is_valid():\n try:\n intr = interface_form.instance\n intr.system = system\n intr.full_clean()\n intr.save()\n except ValidationError, e:\n interface_form._errors['__all__'] = ErrorList(e.messages)\n return render(request, 'static_intr/static_intr_form.html', {\n 'form': interface_form,\n 'form_title': 'New Interface for System {0}'.format(\n system)\n })\n else:\n return render(request, 'static_intr/static_intr_form.html', {\n 'form': interface_form,\n 'form_title': 'New Interface for System {0}'.format(system)\n })\n\n messages.success(request, \"Success! Interface Created.\")\n return redirect(system)\n\n else:\n interface_form = StaticInterfaceForm()\n return render(request, 'static_intr/static_intr_form.html', {\n 'form': interface_form,\n 'form_title': 'New Interface for System {0}'.format(system)\n })", "metadata": "root.create_static_interface", "header": "['module', '___EOS___']", "index": 272 }, { "content": "def quick_create(request, system_pk):\n # TODO, make sure the user has access to this system\n system = get_object_or_404(System, pk=system_pk)\n if request.method == 'POST':\n interface_form = StaticInterfaceQuickForm(request.POST)\n\n a, ptr, r = None, None, None\n if interface_form.is_valid():\n try:\n # mac = interface_form.cleaned_data['mac']\n if 'label' in interface_form.cleaned_data:\n label = interface_form.cleaned_data['label']\n else:\n label = \"\"\n mrange_pk = interface_form.cleaned_data['range']\n mrange = get_object_or_404(Range, pk=mrange_pk)\n network = mrange.network\n ip_type = network.ip_type\n vlan = network.vlan\n site = network.site\n\n networks = []\n for network in vlan.network_set.all():\n if not network.site:\n continue\n if network.site.get_site_path() == site.get_site_path():\n networks.append(network)\n if not networks:\n raise ValidationError(\n \"No appropriate networks found. Consider adding this \"\n \"interface manually.\")\n\n ip = mrange.get_next_ip()\n if ip is None:\n raise ValidationError(\n \"No appropriate IP found in {0} Vlan {1} Range {2} - \"\n \"{3}. Consider adding this interface \"\n \"manually.\".format(site.name, vlan.name,\n mrange.start_str, mrange.end_str))\n\n expected_name = \"{0}.{1}.mozilla.com\".format(\n vlan.name, site.get_site_path())\n print \"Expected name {0}\".format(expected_name)\n try:\n domain = Domain.objects.get(name=expected_name)\n except ObjectDoesNotExist, e:\n raise ValidationError(\n \"The domain '{0}' doesn't seem to exist. Consider \"\n \"creating this interface manually.\".\n format(expected_name))\n\n intr = StaticInterface(label=label, domain=domain,\n ip_str=str(ip),\n # ip_type=ip_type, mac=mac,\n # system=system)\n ip_type=ip_type, system=system)\n intr.full_clean()\n intr.save()\n except ValidationError, e:\n interface_form._errors['__all__'] = ErrorList(e.messages)\n return render(request, 'static_intr/static_intr_form.html', {\n 'form': interface_form,\n 'form_title': \"Quick Interface Create for System \"\n \"{0}\".format(system)\n })\n else:\n return render(request, 'static_intr/static_intr_form.html', {\n 'form': interface_form,\n 'form_title': 'Quick Interface Create for System {0}'.format(\n system)\n })\n\n messages.success(request, \"Success! Interface Created.\")\n return redirect(system)\n\n else:\n interface_form = StaticInterfaceQuickForm()\n return render(request, 'static_intr/static_intr_form.html', {\n 'form': interface_form,\n 'form_title': 'Quick Interface Create for System {0}'.format(\n system)\n })", "metadata": "root.quick_create", "header": "['module', '___EOS___']", "index": 310 } ]

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[ { "content": "from scipy.ndimage import convolve\n\nfrom keras.layers import containers\nfrom keras.models import Sequential, model_from_yaml\nfrom keras.layers.core import Dense, Dropout, AutoEncoder, MaxoutDense, Activation, Merge\nfrom keras.layers.advanced_activations import PReLU\nfrom keras.layers.embeddings import Embedding\nfrom keras.layers.noise import GaussianNoise\nfrom keras.optimizers import SGD, RMSprop, Adagrad, Adam\nfrom keras import regularizers\nfrom keras.callbacks import EarlyStopping, ModelCheckpoint\nimport numpy as np\n\n# %run ../viz/visualize.py\n# %run ../viz/performance.py\nfrom viz import *\nfrom likelihood import *\n\n\n\n\n\n\n\nPLOT_DIR = './plots/arxiv/%s'\n\ndata = np.load('../FINAL_SAMPLE.npy')\n\nprint '{} jets before preselection'.format(data.shape[0])\n\nsignal, pt, mass, tau_21 = data['signal'], data['jet_pt'], data['jet_mass'], data['tau_21']\n\nimport deepdish.io as io\n\nnet = io.load('./SLACNetConv-final-logloss.h5')\n\nimport matplotlib.cm as cm\n\nfg = filter_grid(net['layer_0']['param_0'].reshape(64, 11, 11), normalize=False, cmap=cm.YlGnBu, symmetric=False)\n\nfg.savefig(PLOT_DIR % 'conv-filts.pdf')\n\n\nsignal = (signal == 1)\nbackground = (signal == False)\n\n# -- calculate the weights\nweights = np.ones(data.shape[0])\n\n# reference_distribution = np.random.uniform(250, 300, signal.sum())\nreference_distribution = pt[background]\n\nweights[signal] = get_weights(reference_distribution, pt[signal], \n\tbins=np.linspace(250, 300, 200))\n\nweights[background] = get_weights(reference_distribution, pt[background], \n\tbins=np.linspace(250, 300, 200))\n# weights[signal] = get_weights(pt[signal != 1], pt[signal], \n# \tbins=np.concatenate((\n# \t\tnp.linspace(200, 300, 1000), np.linspace(300, 1005, 500)))\n# \t)\n\n\n\nsig_jets = data['image'][signal == True]\nbkg_jets = data['image'][signal == False]\n\nsig_mean = np.average(sig_jets, axis=0)#, weights=weights[signal == True])\nbkg_mean = np.average(bkg_jets, axis=0)#, weights=weights[signal == False])\n\nsig_mean_ben = np.average(ben['image'][ben['signal'] == 1], axis=0)\nbkg_mean_ben = np.average(ben['image'][ben['signal'] == 0], axis=0)\n\n\n\n\nfg = filter_grid([_filt_diff(sig_mean, bkg_mean, np.sign(w) * np.sqrt(np.abs(w))) for w in net['layer_0']['param_0'].reshape(64, 11, 11)], normalize=False, symmetric=True)\n\nfg.savefig(PLOT_DIR % 'conv-diffs-global.pdf')\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def filter_grid(filters, labels=None, nfilters='all', shape=None, normalize=True, cmap=None, symmetric=True):\n '''\n A tool for visualizing filters on a grid.\n\n Args:\n filters (iterable): each element should be an \n image with len(image.shape) == 2\n\n nfilters: (str or int): out of the total filters, \n how many to plot? If a str, must be 'all'\n\n shape (tuple): What shape of grid do we want?\n\n normalize (bool): do we normalize all filters to have \n magnitude 1?\n\n Returns: \n plt.figure\n '''\n \n NUMERICAL_NOISE_THRESH = 1e-3\n\n if nfilters == 'all':\n side_length = int(np.round(np.sqrt(len(filters))))\n else:\n side_length = int(np.round(np.sqrt(nfilters)))\n\n if cmap is None:\n cma = custom_div_cmap(50)\n else:\n cma = cmap\n fig = plt.figure(figsize=(15, 15), dpi=140)\n\n if shape is None:\n grid_layout = gridspec.GridSpec(side_length, side_length)\n nplots = side_length ** 2\n else:\n grid_layout = gridspec.GridSpec(shape[0], shape[1])\n nplots = shape[0] * shape[1]\n # GmtoT1osfCpLCw6lzpnXh79y\n plt.title('plots')\n grid_layout.update(wspace=0.0, hspace=0.0) # set the spacing between axes. \n\n for i, filt in enumerate(filters):\n \tfilt = filt.copy()\n ax = plt.subplot(grid_layout[i])\n if normalize:\n filt /= np.s\n um(filt ** 2)\n\n # -- trim off absurd values.\n # abs_max = np.percentile(np.abs(filt), 98)\n abs_max = np.max(np.abs(filt))\n\n # -- trim out numerical zero noise\n # filt[np.abs(filt) < NUMERICAL_NOISE_THRESH] = 0.0\n if symmetric:\n image = ax.imshow(filt, interpolation='nearest', \n cmap=cma, vmin=-abs_max, vmax=abs_max)\n else:\n image = plt.imshow(filt, interpolation='nearest', cmap=cma)\n if i % 10 == 0:\n logger.info('{} of {} completed.'.format(i, nplots))\n plt.axis('off')\n if labels is not None:\n plt.title(labels[i])\n plt.subplots_adjust(hspace = 0, wspace=0)\n\n return fig", "metadata": "root.filter_grid", "header": "['module', '___EOS___']", "index": 21 }, { "content": "def _filt_diff(s, b, w, border='constant'):\n\treturn convolve(s, w, mode=border, cval=0.0) - convolve(b, w, mode=border, cval=0.0)", "metadata": "root._filt_diff", "header": "['module', '___EOS___']", "index": 143 } ]

[ { "span": "from keras.layers import containers", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 35 }, { "span": "from keras.models import Sequential, model_from_yaml", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 52 }, { "span": "from keras.layers.core import Dense, Dropout, AutoEncoder, MaxoutDense, Activation, Merge", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 89 }, { "span": "from keras.layers.advanced_activations import PReLU", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 51 }, { "span": "from keras.layers.embeddings import Embedding", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 45 }, { "span": "from keras.layers.noise import GaussianNoise", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 44 }, { "span": "from keras.optimizers import SGD, RMSprop, Adagrad, Adam", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 56 }, { "span": "from keras import regularizers", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 30 }, { "span": "from keras.callbacks import EarlyStopping, ModelCheckpoint", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 58 } ]

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[ { "content": " def __init__(self, fname, missing_values=False, encoding=None):\n if encoding == None:\n import locale\n self._encoding = locale.getpreferredencoding()\n else:\n self._encoding = encoding\n self._missing_values = missing_values\n self._parse_header(fname)", "metadata": "root.StataReader.__init__", "header": "['class', 'StataReader', '(', 'object', ')', ':', '___EOS___']", "index": 293 }, { "content": " def _col_size(self, k = None):\n \"\"\"Calculate size of a data record.\"\"\"\n if len(self._col_sizes) == 0:\n self._col_sizes = lmap(lambda x: self._calcsize(x),\n self._header['typlist'])\n if k == None:\n return self._col_sizes\n else:\n return self._col_sizes[k]", "metadata": "root.StataReader._col_size", "header": "['class', 'StataReader', '(', 'object', ')', ':', '___EOS___']", "index": 503 } ]

[ { "span": "encoding == None:", "start_line": 294, "start_column": 11, "end_line": 294, "end_column": 27 }, { "span": "k == None:", "start_line": 508, "start_column": 11, "end_line": 508, "end_column": 20 } ]

[]

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[ { "content": "def unpacker():\n for i in range(10000):\n a, b, c = giveUnpackResult()", "metadata": "root.unpacker", "header": "['module', '___EOS___']", "index": 26 } ]

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[ { "content": "def test_option():\n kernel = get_kernel()\n d = Dummy(kernel)\n assert 'Options:' in d.line_dummy.__doc__\n assert '--size' in d.line_dummy.__doc__\n\n ret = d.call_magic('line', 'dummy', '', 'hey -s400,200')\n assert ret == d\n assert d.foo == 'hey', d.foo\n assert d.size == (400, 200)\n\n ret = d.call_magic('line', 'dummy', '', 'hey there')\n assert d.foo == 'hey there'\n\n ret = d.call_magic('line', 'dummy', '', 'range(1, 10)')\n assert d.foo == range(1, 10)\n\n ret = d.call_magic('line', 'dummy', '', '[1, 2, 3]')\n assert d.foo == [1, 2, 3]\n\n ret = d.call_magic('line', 'dummy', '', 'hey -l -s400,200')\n assert d.size == (400, 200)\n assert d.foo == \"hey -l\"\n\n ret = d.call_magic('line', 'dummy', '', 'hey -s -- -s400,200')\n assert d.size == (400, 200)\n assert d.foo == \"hey -s\"", "metadata": "root.test_option", "header": "['module', '___EOS___']", "index": 66 } ]

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[ { "span": "ret ", "start_line": 90, "start_column": 4, "end_line": 90, "end_column": 7 } ]

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[ { "content": " def _next_server(self, delay):\n jitter = random.randint(0, 100) / 100.0\n while time.time() < self.last_attempt + delay + jitter:\n # Skip rw ping checks if its too soon\n return False\n for host, port in self.hosts:\n log.debug(\"Pinging server for r/w: %s:%s\", host, port)\n self.last_attempt = time.time()\n try:\n with self.socket_handling():\n sock = self.connection((host, port))\n sock.sendall(b\"isro\")\n result = sock.recv(8192)\n sock.close()\n if result == b'rw':\n return (host, port)\n else:\n return False\n except ConnectionDropped:\n return False\n\n # Add some jitter between host pings\n while time.time() < self.last_attempt + jitter:\n return False\n delay *= 2", "metadata": "root.RWPinger._next_server", "header": "['class', 'RWPinger', '(', 'object', ')', ':', '___EOS___']", "index": 105 } ]

[ { "span": "while time.time() < self.last_attempt + jitter:", "start_line": 127, "start_column": 12, "end_line": 127, "end_column": 59 } ]

[]

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[ { "content": "def initializeLogger(name):\n ''' get and return named logger '''\n if Configuration.DEBUG == True:\n print(\"UnitTestUtilities - initializeLogger\")\n\n # Check if the path to the log files exists, and create if not\n if not os.path.exists(Configuration.logPath):\n dummy = makeFolderFromPath(Configuration.logPath)\n\n # get a unique log file name if we don't have a name already\n if name == None or name == \"\":\n name = getLoggerName()\n\n logFile = os.path.join(Configuration.logPath, name)\n\n # if the log file does NOT exist, create it\n if not os.path.exists(logFile):\n logFile = makeFileFromPath(logFile)\n\n logging.basicConfig(format='%(levelname)s: %(asctime)s %(message)s', filename=logFile, level=logging.DEBUG)\n logger = logging.getLogger(name)\n return logger", "metadata": "root.initializeLogger", "header": "['module', '___EOS___']", "index": 90 }, { "content": "def checkGeoObjects(objects):\n ''' check geospatial stuff exists '''\n if Configuration.DEBUG == True: print(\"UnitTestUtilities - checkGeoObjects\")\n for object2Check in objects:\n #TODO: Shouldn't we be using arcpy.Exists()?\n desc = arcpy.Describe(object2Check)\n if desc == None:\n print(\"--> Invalid Object: \" + str(object2Check))\n arcpy.AddError(\"Bad Input\")\n raise Exception('Bad Input')\n else:\n if Configuration.DEBUG == True: print(\"Valid Object: \" + desc.Name)", "metadata": "root.checkGeoObjects", "header": "['module', '___EOS___']", "index": 169 } ]

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[]

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[ { "content": " def replacecode(self, text):\n m = 1\n pend= 0\n while m<>None:\n m = self.pstatement.search(text, pend)\n if m == None:\n return 0, text\n tag = m.group('tagname')\n if len(tag) == 0:\n raise 'Error in blurb code' # Better make it crash to show the error\n return 0, '__empty tag__'\n try:\n result = eval(tag)\n except:\n result = '__error('+tag+')__'\n if not isinstance(result, basestring):\n result = str(result)\n parts = string.split(text, '<-' + tag + '->')\n text = parts[0] + result + string.join(parts[1:], '<-' + tag + '->')\n return 1, text", "metadata": "root.BlurbWriter.replacecode", "header": "['class', 'BlurbWriter', '(', 'object', ')', ':', '___EOS___']", "index": 258 }, { "content": " def replacetag(self, level, text):\n level = level + 1\n if level > 100:\n raise 'recursion error? too many nested instructions!', self.lasttag\n #pend = 0\n m = 1\n while m<>None:\n start, stop = self.findtag(text)\n if start == None:\n return 0, text\n tag = text[start:stop]\n if len(tag) == 0:\n raise 'Error in blurb code' # Better make it crash to show the error\n return 0, '__empty tag__'\n\n # do the meta-recursive tag-tagging thing here\n metatext = text\n metatag = tag\n while string.find(tag, opentag) <> -1:\n _, metatag = self.replacetag(level, tag) # ok, metalog\n parts = string.split(metatext, tag)\n if len(parts) > 1:\n tag = string.join(parts, metatag)\n else:\n tag = metatag\n return self.replacetag(level, tag)\n \n tagname, cmd, variable, hard = self.parsetag(tag)\n # process in-tag commands, if any\n cachethis = 0 # whether results should be cached\n setarticle = 0 # prepare an article ( 'a' or 'an' )\n uppered = 0 # make first character uppercase\n formatcmds = []\n for i in cmd:\n si = string.strip(i)\n if not si:\n continue\n if si=='article':\n setarticle = 1\n elif si[0] == '!': # it's a format command!\n formatcmds.append(si[1:])\n elif si[0] == '^': # make first character uppercase\n uppered = 1\n\n parts = string.split(text, opentag + tag + closetag)\n if self.has_key(tagname):\n _, selection = self.choice(variable, tagname) # ci, selection\n _, c = self.replacetag(level, selection) # ok, c\n else:\n _, c = self.replacetag(level, '__' + tagname + '__') # ok, c \n self.lasttag = c\n\n # take care of the article command\n art = ''\n if setarticle:\n if c[0] in vowels:\n art = 'an '\n else:\n art = 'a '\n if uppered and c:\n c = string.upper(c[0])+c[1:]\n\n # format the line if necessary\n if len(formatcmds) > 0 and self.formatfunc:\n for fc in formatcmds:\n if DEBUG:\n print 'writerformatting before:', fc, c\n if not self.formatdict.has_key(fc):\n continue\n c = self.formatfunc(c, self.formatdict[fc])\n if DEBUG:\n print 'writerformatting after:', fc, c\n\n # build the new line\n vardef = c\n if variable:\n c = ''\n try:\n text = parts[0] + art + c + string.join(parts[1:], opentag + tag + closetag)\n except:\n print '13213312312321231'\n pass\n # store the result in the cache\n # note: it is storing the stylised version\n if variable or cachethis:\n if variable:\n tg = variable\n else:\n tg = tagname\n if hard:\n self.define(tg, vardef)\n else:\n self.softdefine(tg, vardef)\n return 0, text", "metadata": "root.BlurbWriter.replacetag", "header": "['class', 'BlurbWriter', '(', 'object', ')', ':', '___EOS___']", "index": 318 } ]

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[ { "content": "#!/usr/bin/env python\n# -*- encode: utf-8 -*-\n\n#Copyright 2015 RAPP\n\n#Licensed under the Apache License, Version 2.0 (the \"License\");\n#you may not use this file except in compliance with the License.\n#You may obtain a copy of the License at\n\n #http://www.apache.org/licenses/LICENSE-2.0\n\n#Unless required by applicable law or agreed to in writing, software\n#distributed under the License is distributed on an \"AS IS\" BASIS,\n#WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n#See the License for the specific language governing permissions and\n#limitations under the License.\n\n# Authors: Athanassios Kintsakis, Aris Thallas, Manos Tsardoulias\n# contact: akintsakis@issel.ee.auth.gr, aris.thallas@{iti.gr, gmail.com}, etsardou@iti.gr\n\nimport rospy\nimport sys\nimport subprocess\nimport time\n\nfrom greek_support import *\nfrom english_support import *\nfrom sphinx4_wrapper import *\nfrom rapp_tools import *\nfrom sphinx4_configuration_params import *\n\nfrom global_parameters import GlobalParams\n\nfrom rapp_platform_ros_communications.srv import (\n SpeechRecognitionSphinx4Srv,\n SpeechRecognitionSphinx4SrvResponse,\n SpeechRecognitionSphinx4SrvRequest,\n SpeechRecognitionSphinx4ConfigureSrv,\n SpeechRecognitionSphinx4ConfigureSrvResponse,\n SpeechRecognitionSphinx4ConfigureSrvRequest,\n SpeechRecognitionSphinx4TotalSrv,\n SpeechRecognitionSphinx4TotalSrvResponse\n )\n\nfrom rapp_platform_ros_communications.srv import (\n fetchDataSrv,\n fetchDataSrvRequest\n )\n\nfrom rapp_platform_ros_communications.msg import (\n StringArrayMsg\n )\n\nfrom std_msgs.msg import (\n String\n )\n\n## @class SpeechRecognitionSphinx4\n# @brief Provides a complete Rapp Sphinx Entity.\n#\n# Maintains a complete Rapp Sphinx Entity for the\n# speech_recognition_sphinx4_handler_node.SpeechRecognitionSphinx4HandlerNode\n# to perform the speech recognition.\n\n# Main function\nif __name__ == \"__main__\":\n rospy.init_node('SpeechRecognitionSphinx4')\n SpeechRecognitionSphinx4Node = SpeechRecognitionSphinx4()\n rospy.spin()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class SpeechRecognitionSphinx4(GlobalParams):\n\n ## Constructor performing initializations\n\n ## Performs Sphinx4 configuration and speech recognition\n #\n # @param req [rapp_platform_ros_communications::SpeechDetectionSphinx4Wrapper::SpeechRecognitionSphinx4TotalSrvRequest] The speech recognition request\n # @return res [rapp_platform_ros_communications::SpeechDetectionSphinx4Wrapper::SpeechRecognitionSphinx4TotalSrvResponse] The speech recognition response\n\n ## Performs Sphinx4 speech recognition\n #\n # @param req [rapp_platform_ros_communications::SpeechDetectionSphinx4Wrapper::SpeechRecognitionSphinx4SrvRequest] The speech recognition request\n # @return res [rapp_platform_ros_communications::SpeechDetectionSphinx4Wrapper::SpeechRecognitionSphinx4SrvResponse] The speech recognition response\n\n ## Performs Sphinx4 configuration\n #\n # @param req [rapp_platform_ros_communications::SpeechDetectionSphinx4Wrapper::SpeechRecognitionSphinx4ConfigureSrvRequest] The sphinx configuration request\n # @return res [rapp_platform_ros_communications::SpeechDetectionSphinx4Wrapper::SpeechRecognitionSphinx4ConfigureSrvRequest] The sphinx configuration response", "metadata": "root.SpeechRecognitionSphinx4", "header": "['module', '___EOS___']", "index": 63 }, { "content": " def __init__(self):\n GlobalParams.__init__(self)\n\n ## The sphinx wrapper communicates with the actual Sphinx.java process\n #\n # (see sphinx4_wrapper.Sphinx4Wrapper)\n self._sphinx4 = Sphinx4Wrapper()\n ## Greek_support creates necessary files for Greek speech recognition\n #\n # (see greek_support.GreekSupport)\n self._greek_support = GreekSupport()\n ## English creates necessary files for english speech recognition\n #\n # (see english_support.EnglishSupport)\n self._english_support = EnglishSupport()\n ## The Sphinx configuration parameters\n #\n # (see sphinx4_configuration_params.SphinxConfigurationParams)\n self._configuration_params = SphinxConfigurationParams()\n\n ## A dictionary to transform the englified greek words to actual greek words\n self._word_mapping = {}\n\n ## Defines whether database authentication should be used\n self._use_db_authentication = rospy.get_param(\\\n \"rapp_speech_detection_sphinx4_use_db_authentication\")\n\n #---------------------------Check db authentication------------------------#\n if self._use_db_authentication == True:\n serv_db_topic = \\\n rospy.get_param(\"rapp_mysql_wrapper_user_fetch_data_topic\")\n ## The database authentication service client\n #\n # Used to identify user performed the speech recognition request.\n # (see mysql_wrapper.MySQLdbWrapper.fetchData)\n self._authentication_service = rospy.ServiceProxy(\\\n serv_db_topic, fetchDataSrv)\n\n if(not self._use_db_authentication):\n rospy.logerror(\"Sphinx4 Seech Detection use authentication param not found\")\n\n\n total_path = \".:\" + self._sphinx_jar_files_url + \\\n \"/\" + self._sphinx_jar_file + \":\" \\\n + self._sphinx_package_url + \"/src\"\n\n sphinx_configuration = { \\\n 'jar_path' : total_path, \\\n 'configuration_path' : self._language_models_url + \"/greekPack/default.config.xml\", \\\n 'acoustic_model' : self._acoustic_models_url , \\\n 'grammar_name' : 'hello', \\\n 'grammar_folder' : self._language_models_url + \"/greekPack/\", \\\n 'dictionary' : self._language_models_url + \"/greekPack/custom.dict\", \\\n 'language_model' : self._language_models_url + \"/greekPack/sentences.lm.bin\", \\\n 'grammar_disabled' : True\n }\n self._sphinx4.initializeSphinx(sphinx_configuration)", "metadata": "root.SpeechRecognitionSphinx4.__init__", "header": "['class', 'SpeechRecognitionSphinx4', '(', 'GlobalParams', ')', ':', '___NEWLINE___', '___NL___', '## Constructor performing initializations', '___NL___', '___EOS___']", "index": 66 }, { "content": " def speechRecognitionBatch(self, req):\n\n total_res = SpeechRecognitionSphinx4TotalSrvResponse()\n\n #-------------------------Check with database-------------------------#\n if self._use_db_authentication == True:\n req_db = fetchDataSrv()\n req_db.req_cols=[\"username\"]\n entry1=[\"username\", req.user]\n req_db.where_data=[StringArrayMsg(s=entry1)]\n\n resp = self._authentication_service(req_db.req_cols, req_db.where_data)\n if resp.success.data != True or len(resp.res_data) == 0:\n total_res.error = \"Non authenticated user\"\n return total_res\n\n conf_req = SpeechRecognitionSphinx4ConfigureSrvRequest()\n spee_req = SpeechRecognitionSphinx4SrvRequest()\n\n conf_req.language = req.language\n conf_req.words = req.words\n conf_req.grammar = req.grammar\n conf_req.sentences = req.sentences\n\n conf_res = SpeechRecognitionSphinx4ConfigureSrvResponse()\n conf_res = self._configureSpeechRecognition(conf_req)\n total_res.error = conf_res.error\n if conf_res.error != '':\n total_res.error = total_res.error + '\\n' + conf_res.error\n return total_res\n\n spee_req.path = req.path\n spee_req.audio_source = req.audio_source\n spee_req.user = req.user\n spee_res = self._speechRecognition(spee_req)\n total_res.words = spee_res.words\n total_res.error = spee_res.error\n return total_res", "metadata": "root.SpeechRecognitionSphinx4.speechRecognitionBatch", "header": "['class', 'SpeechRecognitionSphinx4', '(', 'GlobalParams', ')', ':', '___NEWLINE___', '___NL___', '## Constructor performing initializations', '___NL___', '___EOS___']", "index": 128 }, { "content": " def _speechRecognition(self, req):\n res = SpeechRecognitionSphinx4SrvResponse()\n words = self._sphinx4.performSpeechRecognition(req.path, req.audio_source, req.user)\n rapp_print (words)\n # Error handling - Must be implemented with exceptions\n if len(words) == 1 and \"Error:\" in words[0]:\n res.error = words[0]\n res.words = []\n return res\n\n for word in words:\n if self._configuration_params._language != \"en\":\n rapp_print (\"Word: #\" + word + \"#\")\n if word == \"\" or word == '<unk>':\n continue\n res.words.append(self._word_mapping[word])\n else:\n res.words.append(word.replace(\"'\",\" \"))\n\n return res;", "metadata": "root.SpeechRecognitionSphinx4._speechRecognition", "header": "['class', 'SpeechRecognitionSphinx4', '(', 'GlobalParams', ')', ':', '___NEWLINE___', '___NL___', '## Constructor performing initializations', '___NL___', '___EOS___']", "index": 171 }, { "content": " def _configureSpeechRecognition(self, req):\n res = SpeechRecognitionSphinx4ConfigureSrvResponse()\n res.error = ''\n conf = {} # Dummy initialization\n reconfigure = False\n\n if self._configuration_params._language != req.language:\n reconfigure = True\n elif self._configuration_params._words != req.words:\n reconfigure = True\n elif self._configuration_params._grammar != req.grammar:\n reconfigure = True\n elif self._configuration_params._sentences != req.sentences:\n reconfigure = True\n self._configuration_params._language = req.language\n self._configuration_params._words = req.words\n self._configuration_params._grammar = req.grammar\n self._configuration_params._sentences = req.sentences\n\n if reconfigure == False:\n return res\n\n # English language\n if self._configuration_params._language == 'en':\n rapp_print (\"Language set to English\")\n # Whole dictionary utilization\n if len(self._configuration_params._words) == 0:\n rapp_print (\"Generic model used\")\n # success is either True (bool) or error (string)\n try:\n conf = self._english_support.getGenericConfiguration()\n except RappError as e:\n res.error = e.value\n return res\n # Limited dictionary utilization\n else:\n rapp_print (\"Limited model used\")\n # success is either True (bool) or error (string)\n try:\n conf = self._english_support.getLimitedVocebularyConfiguration(\\\n self._configuration_params._words, \\\n self._configuration_params._grammar, \\\n self._configuration_params._sentences)\n except RappError as e:\n res.error = e.value\n return res\n\n # Greek language\n elif self._configuration_params._language == \"el\":\n rapp_print (\"Language set to Greek\")\n # Whole dictionary utilization\n if len(self._configuration_params._words) == 0:\n rapp_print (\"Generic model used\")\n # TODO\n # Limited dictionary utilization\n else:\n rapp_print (\"Words to be recognized (\" + \\\n str(len(self._configuration_params._words)) + \"):\")\n # success is either True (bool) or error (string)\n try:\n [conf, eng_w] = self._greek_support.getLimitedVocebularyConfiguration(\\\n self._configuration_params._words, \\\n self._configuration_params._grammar, \\\n self._configuration_params._sentences)\n except RappError as e:\n res.error = e.value\n return res\n\n self._word_mapping = {}\n for ew in eng_w:\n self._word_mapping[ew] = eng_w[ew]\n rapp_print (self._word_mapping)\n\n else:\n res.error = \"Wrong language\"\n return res\n\n # Actual sphinx4 configuration\n rapp_print (\"Configuration: \\n\")\n rapp_print (conf)\n self._sphinx4.configureSphinx(conf)\n return res", "metadata": "root.SpeechRecognitionSphinx4._configureSpeechRecognition", "header": "['class', 'SpeechRecognitionSphinx4', '(', 'GlobalParams', ')', ':', '___NEWLINE___', '___NL___', '## Constructor performing initializations', '___NL___', '___EOS___']", "index": 196 } ]

[ { "span": "import sys", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 10 }, { "span": "import subprocess", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 17 }, { "span": "import time", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 11 }, { "span": "from rapp_platform_ros_communications.srv import (\n SpeechRecognitionSphinx4Srv,\n SpeechRecognitionSphinx4SrvResponse,\n SpeechRecognitionSphinx4SrvRequest,\n SpeechRecognitionSphinx4ConfigureSrv,\n SpeechRecognitionSphinx4ConfigureSrvResponse,\n SpeechRecognitionSphinx4ConfigureSrvRequest,\n SpeechRecognitionSphinx4TotalSrv,\n SpeechRecognitionSphinx4TotalSrvResponse\n )", "start_line": 33, "start_column": 0, "end_line": 42, "end_column": 3 }, { "span": "from rapp_platform_ros_communications.srv import (\n fetchDataSrv,\n fetchDataSrvRequest\n )", "start_line": 44, "start_column": 0, "end_line": 47, "end_column": 3 }, { "span": "from std_msgs.msg import (\n String\n )", "start_line": 53, "start_column": 0, "end_line": 55, "end_column": 3 } ]

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[ { "content": "# Copyright 2016, Kay Hayen, mailto:kay.hayen@gmail.com\n#\n# Python tests originally created or extracted from other peoples work. The\n# parts were too small to be protected.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n#\nfrom __future__ import print_function\n\n\n\nprint(\"Testing locals():\")\nprint(someFunctionWritingLocals())\nprint(someFunctionWritingLocalsContainingExec())\n\n\nprint(\"Vars on module level\", displayDict(vars()))\n\nmodule_locals = locals()\n\n# Patch away \"__file__\" path in a hard to detect way. This will make sure,\n# repeated calls to locals really get the same dictionary.\nimport os\nmodule_locals[\"__file__\"] = os.path.basename(module_locals[ \"__file__\" ])\ndel module_locals\n\nprint(\"Use of locals on the module level\", displayDict(locals()))\n\n\n\nprint(\"Testing globals():\")\nsomeFunctionUsingGlobals()\n\nprint(\"Testing dir():\")\n\nprint(\"Module dir\", end = ' ')\n\n\nsomeFunctionUsingDir()\n\nprint(\"Making a new type, with type() and 3 args:\", end = ' ')\nnew_class = type(\"Name\", (object,), {})\nprint(new_class, new_class())\n\nprint(\"None has type\", type(None))\n\nprint(\"Constant ranges\", range(2), range(1, 6), range(3, 0, -1), range(3, 8, 2), range(5, -5, -3))\nprint(\"Border cases\", range(0), range(-1), range(-1, 1))\n\nprint(\"Corner case large negative value\", range(-2**100))\nprint(\"Corner case with large start/end values in small range\", range(2**100,2**100+2))\n\ntry:\n print(\"Range with 0 step gives:\", end = ' ')\n print(range(3, 8, 0))\nexcept ValueError as e:\n print(repr(e))\n\ntry:\n print(\"Range with float:\", end = ' ')\n print(range(1.0))\nexcept TypeError as e:\n print(\"Gives exception:\", repr(e))\n\ntry:\n print(\"Empty range call\", end = ' ')\n print(range())\nexcept TypeError as e:\n print(\"Gives exception:\", e)\n\nprint(\"List from iterable\", list(\"abc\"), list())\nprint(\"List from sequence\", list(sequence = (0, 1, 2)))\nprint(\"Tuple from iterable\", tuple(\"cda\"), tuple())\nprint(\"Tuple from sequence\", tuple(sequence = (0, 1, 2)))\n\nprint(\"Dictionary from iterable and keywords\", dict((\"ab\", (1, 2)), f = 1, g = 1))\nprint(\"More constant dictionaries\", {\"two\": 2, \"one\": 1}, {}, dict())\ng = {\"two\": 2, \"one\": 1}\nprint(\"Variable dictionary\", dict(g))\nprint(\"Found during optimization\", dict(dict({\"le\": 2, \"la\": 1}), fu = 3), dict(named = dict({\"le\": 2, \"la\": 1})))\n\nprint(\"Floats from constants\", float(\"3.0\"), float(x = 9.0), float())\nprint(\"Found during optimization\", float(float(\"3.2\")), float(x = float(11.0)))\n\nprint(\"Complex from constants\", complex(\"3.0j\"), complex(real = 9.0), complex(imag = 9.0), complex(1,2), complex())\nprint(\"Found during optimization\", complex(float(\"3.2\")), complex(real = float(11.0)), complex(imag = float(11.0)))\n\nprint(\"Strs from constants\", str(\"3.3\"), str(object = 9.1), str())\nprint(\"Found during optimization\", str(float(\"3.3\")), str(object = float(12.0)))\n\nprint(\"Bools from constants\", bool(\"3.3\"), bool(x = 9.1), bool(0), bool())\nprint(\"Found during optimization\", bool(float(\"3.3\")), bool(x = float(0.0)))\n\nprint(\"Ints from constants\", int('3'), int(x = '9'), int('f', 16), int(x = 'e', base = 16), int(\"0101\", base = 2), int(0), int())\nprint(\"Found ints during optimization\", int(int('3')), int(x = int(0.0)))\n\ntry:\n print(\"Longs from constants\", long('3'), long(x = '9'), long('f', 16), long(x = 'e', base = 16), long(\"0101\", base = 2), long(0), long())\n print(\"Found longs during optimization\", long(long('3')), long(x = long(0.0)))\nexcept NameError:\n print(\"Python3 has no long type.\")\n pass\n\n\ntry:\n print(\"Int with only base\", int(base = 2), end = ' ')\nexcept Exception as e:\n print(\"Caused\", repr(e))\nelse:\n print(\"Worked\")\n\ntry:\n print(\"Int with large base\", int(2, 37), end = ' ')\nexcept Exception as e:\n print(\"Caused\", repr(e))\nelse:\n print(\"Worked\")\n\ntry:\n print(\"Long with only base\", int(base = 2), end = ' ')\nexcept Exception as e:\n print(\"Caused\", repr(e))\nelse:\n print(\"Worked\")\n\n\nprint(\"Oct from constants\", oct(467), oct(0))\nprint(\"Found during optimization\", oct(int('3')))\n\nprint(\"Hex from constants\", hex(467), hex(0))\nprint(\"Found during optimization\", hex(int('3')))\n\n\nprint(\"Bin from constants\", bin(467), bin(0))\nprint(\"Found during optimization\", bin(int('3')))\n\ntry:\n int(1,2,3)\nexcept Exception as e:\n print(\"Too many args gave\", repr(e))\n\ntry:\n int(y = 1)\nexcept Exception as e:\n print(\"Wrong arg\", repr(e))\n\nf = 3\nprint(\"Unoptimized call of int\", int('0' * f, base = 16))\n\nd = { 'x' : \"12\", \"base\" : 8 }\nprint(\"Dict star argument call of int\", int(**d))\n\n\nbase = 16\n\ntry:\n value = unicode(\"20\")\nexcept NameError:\n print(\"Python3: Has unicode by default.\")\n value = \"20\"\n\nprint(\"Unoptimized calls of int with unicode args\", int(value, base), int(value))\n\nbase = 37\ntry:\n print(\"Int with large base\", int(2, base), end = ' ')\nexcept Exception as e:\n print(\"Caused\", repr(e))\nelse:\n print(\"Worked\")\n\n\ntry:\n print(chr())\nexcept Exception as e:\n print(\"Disallowed without args\", repr(e))\n\ntry:\n print(ord())\nexcept Exception as e:\n print(\"Disallowed without args\", repr(e))\n\ntry:\n print(ord(s = 1))\nexcept Exception as e:\n print(\"Disallowed keyword args\", repr(e))\n\ntry:\n print(ord(1, 2))\nexcept Exception as e:\n print(\"Too many plain args\", repr(e))\n\ntry:\n print(ord(1, s = 2))\nexcept Exception as e:\n print(\"Too many args, some keywords\", repr(e))\n\ntry:\n print(str('1', offer = 2))\nexcept Exception as e:\n print(\"Too many args, some keywords\", repr(e))\n\n# TODO: This is calls, not really builtins.\na = 2\n\nprint(\"Can optimize the star list argness away\", int(*(a,)), end = ' ')\nprint(\"Can optimize the empty star list arg away\", int(*tuple()), end = ' ')\nprint(\"Can optimize the empty star dict arg away\", int(**dict()))\n\nprint(\"Dict building with keyword arguments\", dict(), dict(a = f))\nprint(\n \"Dictionary entirely from constant args\",\n displayDict(\n dict(q = \"Guido\", w = \"van\", e = \"Rossum\", r = \"invented\", t = \"Python\", y = \"\")\n )\n)\n\na = 5\nprint(\"Instance check recognises\", isinstance(a, int))\n\ntry:\n print(\"Instance check with too many arguments\", isinstance(a, long, int))\nexcept Exception as e:\n print(\"Too many args\", repr(e))\n\ntry:\n print(\"Instance check with too many arguments\", isinstance(a))\nexcept Exception as e:\n print(\"Too few args\", repr(e))\n\n\nusingIterToCheckIterable(1)\n\nprint(\"Nested constant, dict inside a list, referencing a built-in compile time constant\", end = ' ')\nprint([dict(type = int)])\n\nprint(\"nan and -nan sign checks:\")\nfrom math import copysign\nprint(copysign(1.0, float(\"nan\")))\nprint(copysign(1.0, float(\"-nan\")))\n\nprint(\"Using != to detect nan floats:\")\na = float(\"nan\")\nif a != a:\n print(\"is nan\")\nelse:\n print(\"isn't nan\")\n\n\nvalues = [\n b'100',\n b'',\n bytearray(b'100'),\n CustomStr(\"100\"),\n CustomBytes(b'100'),\n CustomByteArray(b'100')\n]\n\nfor x in values:\n try:\n print(\"int\", repr(x), int(x), int(x,2))\n except (TypeError, ValueError) as e:\n print(\"caught\", repr(e))\n\n try:\n print(\"long\", repr(x), long(x), long(x,2))\n except (TypeError, ValueError) as e:\n print(\"caught\", repr(e))\n except NameError:\n print(\"Python3 has no long\")\n\n\nz = range(5)\ntry:\n next(z)\nexcept TypeError as e:\n print(\"caught\", repr(e))\n\ntry:\n open()\nexcept TypeError as e:\n print(\"Open without arguments gives\", repr(e))\n\nprint(\"Type of id values:\", type(id(id)))\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

[ { "span": "pass", "start_line": 172, "start_column": 4, "end_line": 172, "end_column": 8 } ]

[]

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[ { "content": " def test_unfinished_entries(self):\n \"\"\"Test that unfinished entries are not added in the database\"\"\"\n # Empty our resource\n SourceEntity.objects.filter(resource=self.resource).delete()\n\n # Make sure that we have no translations to begin with\n self.assertEqual(Translation.objects.filter(source_entity__in=\n SourceEntity.objects.filter(resource=self.resource).values('id')).count(), 0)\n\n # Import file with two senteces\n handler = LinguistHandler('%s/general/unfinished.ts' %\n os.path.split(__file__)[0])\n handler.bind_resource(self.resource)\n handler.set_language(self.resource.source_language)\n handler.parse_file(is_source=True)\n handler.save2db(is_source=True)\n\n # Make sure that we have all sources in the db\n self.assertEqual(SourceEntity.objects.filter(\n resource=self.resource).values('id').count(), 2)\n\n # Make sure that we have all translations in the db\n self.assertEqual(Translation.objects.filter(source_entity__in=\n SourceEntity.objects.filter(resource=self.resource).values('id')).count(), 2)\n\n # Import the same file as a translation file in pt_BR.\n handler = LinguistHandler('%s/general/unfinished.ts' %\n os.path.split(__file__)[0])\n handler.bind_resource(self.resource)\n handler.set_language(self.language)\n handler.parse_file()\n handler.save2db()\n\n # Make sure that we have all sources in the db\n self.assertEqual(SourceEntity.objects.filter(\n resource=self.resource).values('id').count(), 2)\n\n # Make sure that we have all translations in the db\n # One is marked as unfinished so it shouldn't be saved\n self.assertEqual(Translation.objects.filter(source_entity__in=\n SourceEntity.objects.filter(resource=self.resource).values('id')).count(), 3)\n\n # The unfinished translation should be added as a translation\n self.assertEqual(Suggestion.objects.filter(source_entity__in=\n SourceEntity.objects.filter(resource=self.resource).values('id')).count(), 1)", "metadata": "root.TestQtFile.test_unfinished_entries", "header": "['class', 'TestQtFile', '(', 'FormatsBaseTestCase', ')', ':', '___EOS___']", "index": 224 }, { "content": " def test_unfinished_entries(self):\n testfile = os.path.join(\n os.path.dirname(__file__),\n 'en-untranslated.ts'\n )\n handler = LinguistHandler(testfile)\n handler.bind_resource(self.resource)\n handler.set_language(self.language)\n handler.parse_file(is_source=True)\n handler.save2db(is_source=True)\n lang = Language.objects.by_code_or_alias('el')\n testfile = os.path.join(\n os.path.dirname(__file__),\n 'gr-untranslated.ts'\n )\n handler = LinguistHandler(testfile)\n handler.bind_resource(self.resource)\n handler.set_language(lang)\n handler.parse_file()\n handler.save2db()\n handler.compile()\n self.assertEqual(handler.compiled_template.count('unfinished'), 2)", "metadata": "root.TestQtFile.test_unfinished_entries", "header": "['class', 'TestQtFile', '(', 'FormatsBaseTestCase', ')', ':', '___EOS___']", "index": 316 } ]

[ { "span": "test_unfinished_entries(", "start_line": 224, "start_column": 8, "end_line": 224, "end_column": 31 } ]

[ { "span": "test_unfinished_entries(", "start_line": 316, "start_column": 8, "end_line": 316, "end_column": 31 } ]

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[ { "content": " def test_syllabus_page_with_pdf_file(self):\n kwargs = {'HTTP_X_REQUESTED_WITH':'XMLHttpRequest'}\n client = self.get_logged_in_client()\n file_path = settings.MEDIA_ROOT + '/sample.pdf'\n with open(file_path, 'rb') as fp:\n self.assertTrue(fp is not None)\n response = client.post('/teacher/course/1/save_syllabus',{\n 'file': fp,\n }, **kwargs)\n self.assertEqual(response.status_code, 200)\n response = client.post('/teacher/course/1/syllabus')\n self.assertEqual(response.status_code, 200)\n self.assertIn(b'Comics Book Course',response.content)\n self.assertIn(b'ajax_delete_syllabus',response.content)\n self.assertIn(b'PDF RESULT',response.content)", "metadata": "root.SyllabusTestCase.test_syllabus_page_with_pdf_file", "header": "['class', 'SyllabusTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 95 }, { "content": " def test_save_syllabus(self):\n kwargs = {'HTTP_X_REQUESTED_WITH':'XMLHttpRequest'}\n client = self.get_logged_in_client()\n file_path = settings.MEDIA_ROOT + '/sample.pdf'\n with open(file_path, 'rb') as fp:\n self.assertTrue(fp is not None)\n response = client.post('/teacher/course/1/save_syllabus',{\n 'file': fp,\n }, **kwargs)\n self.assertEqual(response.status_code, 200)\n json_string = response.content.decode(encoding='UTF-8')\n array = json.loads(json_string)\n self.assertEqual(array['message'], 'saved')\n self.assertEqual(array['status'], 'success')", "metadata": "root.SyllabusTestCase.test_save_syllabus", "header": "['class', 'SyllabusTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 111 }, { "content": " def test_delete_syllabus_with_correct_user(self):\n kwargs = {'HTTP_X_REQUESTED_WITH':'XMLHttpRequest'}\n client = self.get_logged_in_client()\n file_path = settings.MEDIA_ROOT + '/sample.pdf'\n with open(file_path, 'rb') as fp:\n self.assertTrue(fp is not None)\n response = client.post('/teacher/course/1/save_syllabus',{\n 'file': fp,\n }, **kwargs)\n self.assertEqual(response.status_code, 200)\n json_string = response.content.decode(encoding='UTF-8')\n array = json.loads(json_string)\n self.assertEqual(array['message'], 'saved')\n self.assertEqual(array['status'], 'success')\n \n response = client.post('/teacher/course/1/delete_syllabus',{\n 'syllabus_id': 1,\n }, **kwargs)\n self.assertEqual(response.status_code, 200)\n json_string = response.content.decode(encoding='UTF-8')\n array = json.loads(json_string)\n self.assertEqual(array['message'], 'deleted')\n self.assertEqual(array['status'], 'success')", "metadata": "root.SyllabusTestCase.test_delete_syllabus_with_correct_user", "header": "['class', 'SyllabusTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 126 }, { "content": " def test_delete_syllabus_with_correct_user(self):\n kwargs = {'HTTP_X_REQUESTED_WITH':'XMLHttpRequest'}\n client = self.get_logged_in_client()\n file_path = settings.MEDIA_ROOT + '/sample.pdf'\n with open(file_path, 'rb') as fp:\n self.assertTrue(fp is not None)\n response = client.post('/teacher/course/1/save_syllabus',{\n 'file': fp,\n }, **kwargs)\n self.assertEqual(response.status_code, 200)\n json_string = response.content.decode(encoding='UTF-8')\n array = json.loads(json_string)\n self.assertEqual(array['message'], 'saved')\n self.assertEqual(array['status'], 'success')\n client.logout()\n client = self.get_logged_in_trudy_client()\n response = client.post('/teacher/course/1/delete_syllabus',{\n 'syllabus_id': 1,\n }, **kwargs)\n self.assertEqual(response.status_code, 200)\n json_string = response.content.decode(encoding='UTF-8')\n array = json.loads(json_string)\n self.assertEqual(array['message'], 'unauthorized deletion')\n self.assertEqual(array['status'], 'failed')", "metadata": "root.SyllabusTestCase.test_delete_syllabus_with_correct_user", "header": "['class', 'SyllabusTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 150 } ]

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[ { "content": "class hidden:\n \"\"\"\n Hide abstract base class from unittest's test case loader\n\n http://stackoverflow.com/questions/1323455/python-unit-test-with-base-and-sub-class#answer-25695512\n \"\"\"\n\n class AbstractBatchSystemTest(ToilTest):\n \"\"\"\n A base test case with generic tests that every batch system should pass\n \"\"\"\n __metaclass__ = ABCMeta\n\n @abstractmethod\n def createBatchSystem(self):\n \"\"\"\n :rtype: AbstractBatchSystem\n \"\"\"\n raise NotImplementedError\n\n def supportsWallTime(self):\n return False\n\n def _createDummyConfig(self):\n return Config()\n\n @classmethod\n def setUpClass(cls):\n super(hidden.AbstractBatchSystemTest, cls).setUpClass()\n logging.basicConfig(level=logging.DEBUG)\n\n def setUp(self):\n super(hidden.AbstractBatchSystemTest, self).setUp()\n self.config = self._createDummyConfig()\n self.batchSystem = self.createBatchSystem()\n self.tempDir = self._createTempDir('testFiles')\n\n def tearDown(self):\n self.batchSystem.shutdown()\n super(hidden.AbstractBatchSystemTest, self).tearDown()\n\n def testAvailableCores(self):\n self.assertTrue(multiprocessing.cpu_count() >= numCores)\n\n def testRunJobs(self):\n testPath = os.path.join(self.tempDir, \"test.txt\")\n\n job1 = self.batchSystem.issueBatchJob(\"sleep 1000\", **defaultRequirements)\n job2 = self.batchSystem.issueBatchJob(\"sleep 1000\", **defaultRequirements)\n\n issuedIDs = self._waitForJobsToIssue(2)\n self.assertEqual(set(issuedIDs), {job1, job2})\n\n runningJobIDs = self._waitForJobsToStart(2)\n self.assertEqual(set(runningJobIDs), {job1, job2})\n\n # Killing the jobs instead of allowing them to complete means this test can run very\n # quickly if the batch system issues and starts the jobs quickly.\n self.batchSystem.killBatchJobs([job1, job2])\n self.assertEqual({}, self.batchSystem.getRunningBatchJobIDs())\n\n # Issue a job and then allow it to finish by itself, causing it to be added to the\n # updated jobs queue.\n self.assertFalse(os.path.exists(testPath))\n job3 = self.batchSystem.issueBatchJob(\"touch %s\" % testPath, **defaultRequirements)\n\n updatedID, exitStatus, wallTime = self.batchSystem.getUpdatedBatchJob(maxWait=1000)\n\n # Since the first two jobs were killed, the only job in the updated jobs queue should\n # be job 3. If the first two jobs were (incorrectly) added to the queue, this will\n # fail with updatedID being equal to job1 or job2.\n self.assertEqual(exitStatus, 0)\n self.assertEqual(updatedID, job3)\n if self.supportsWallTime():\n self.assertTrue(wallTime > 0)\n else:\n self.assertIsNone(wallTime)\n self.assertTrue(os.path.exists(testPath))\n self.assertFalse(self.batchSystem.getUpdatedBatchJob(0))\n\n # Make sure killBatchJobs can handle jobs that don't exist\n self.batchSystem.killBatchJobs([10])\n\n def testSetEnv(self):\n # Parasol disobeys shell rules and stupidly splits the command at the space character\n # before exec'ing it, whether the space is quoted, escaped or not. This means that we\n # can't have escaped or quotes spaces in the command line. So we can't use bash -c\n # '...' or python -c '...'. The safest thing to do here is to script the test and\n # invoke that script rather than inline the test via -c.\n def assertEnv():\n import os, sys\n sys.exit(0 if os.getenv('FOO') == 'bar' else 42)\n\n script_body = dedent('\\n'.join(getsource(assertEnv).split('\\n')[1:]))\n with tempFileContaining(script_body) as script_path:\n # First, ensure that the test fails if the variable is *not* set\n command = sys.executable + ' ' + script_path\n job4 = self.batchSystem.issueBatchJob(command, **defaultRequirements)\n updatedID, exitStatus, wallTime = self.batchSystem.getUpdatedBatchJob(maxWait=1000)\n self.assertEqual(exitStatus, 42)\n self.assertEqual(updatedID, job4)\n # Now set the variable and ensure that it is present\n self.batchSystem.setEnv('FOO', 'bar')\n job5 = self.batchSystem.issueBatchJob(command, **defaultRequirements)\n updatedID, exitStatus, wallTime = self.batchSystem.getUpdatedBatchJob(maxWait=1000)\n self.assertEqual(exitStatus, 0)\n self.assertEqual(updatedID, job5)\n\n def testCheckResourceRequest(self):\n if isinstance(self.batchSystem, BatchSystemSupport):\n checkResourceRequest = self.batchSystem.checkResourceRequest\n self.assertRaises(InsufficientSystemResources, checkResourceRequest,\n memory=1000, cores=200, disk=1e9)\n self.assertRaises(InsufficientSystemResources, checkResourceRequest,\n memory=5, cores=200, disk=1e9)\n self.assertRaises(InsufficientSystemResources, checkResourceRequest,\n memory=1001e9, cores=1, disk=1e9)\n self.assertRaises(InsufficientSystemResources, checkResourceRequest,\n memory=5, cores=1, disk=2e9)\n self.assertRaises(AssertionError, checkResourceRequest,\n memory=None, cores=1, disk=1000)\n self.assertRaises(AssertionError, checkResourceRequest,\n memory=10, cores=None, disk=1000)\n checkResourceRequest(memory=10, cores=1, disk=100)\n\n def testGetRescueJobFrequency(self):\n self.assertTrue(self.batchSystem.getRescueBatchJobFrequency() > 0)\n\n def testScalableBatchSystem(self):\n # If instance of scalable batch system\n pass\n\n def _waitForJobsToIssue(self, numJobs):\n issuedIDs = []\n while not len(issuedIDs) == numJobs:\n issuedIDs = self.batchSystem.getIssuedBatchJobIDs()\n return issuedIDs\n\n def _waitForJobsToStart(self, numJobs):\n runningIDs = []\n while not len(runningIDs) == numJobs:\n time.sleep(0.1)\n runningIDs = self.batchSystem.getRunningBatchJobIDs().keys()\n return runningIDs", "metadata": "root.hidden", "header": "['module', '___EOS___']", "index": 52 }, { "content": " @skipIf(SingleMachineBatchSystem.numCores < 3, 'Need at least three cores to run this test')\n def testServices(self):\n options = Job.Runner.getDefaultOptions(self._getTestJobStorePath())\n options.logDebug = True\n options.maxCores = 3\n self.assertTrue(options.maxCores <= SingleMachineBatchSystem.numCores)\n Job.Runner.startToil(Job.wrapJobFn(parentJob, self.scriptCommand()), options)\n with open(self.counterPath, 'r+') as f:\n s = f.read()\n log.info('Counter is %s', s)\n self.assertEqual(self.getCounters(), (0, 3))", "metadata": "root.MaxCoresSingleMachineBatchSystemTest.testServices", "header": "['class', 'MaxCoresSingleMachineBatchSystemTest', '(', 'ToilTest', ')', ':', '___EOS___']", "index": 364 } ]

[ { "span": "self.assertTrue(multiprocessing.cpu_count() >= numCores)", "start_line": 94, "start_column": 12, "end_line": 94, "end_column": 68 }, { "span": "self.assertTrue(wallTime > 0)", "start_line": 126, "start_column": 16, "end_line": 126, "end_column": 45 }, { "span": "self.assertTrue(self.batchSystem.getRescueBatchJobFrequency() > 0)", "start_line": 178, "start_column": 12, "end_line": 178, "end_column": 78 }, { "span": "self.assertTrue(options.maxCores <= SingleMachineBatchSystem.numCores)", "start_line": 369, "start_column": 8, "end_line": 369, "end_column": 78 } ]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": "# -*- coding: utf-8 -*-\n\n\"\"\" S3 RESTful CRUD Methods\n\n @see: U{B{I{S3XRC}} <http://eden.sahanafoundation.org/wiki/S3XRC>}\n\n @requires: U{B{I{gluon}} <http://web2py.com>}\n @requires: U{B{I{lxml}} <http://codespeak.net/lxml>}\n\n @copyright: 2009-2016 (c) Sahana Software Foundation\n @license: MIT\n\n Permission is hereby granted, free of charge, to any person\n obtaining a copy of this software and associated documentation\n files (the \"Software\"), to deal in the Software without\n restriction, including without limitation the rights to use,\n copy, modify, merge, publish, distribute, sublicense, and/or sell\n copies of the Software, and to permit persons to whom the\n Software is furnished to do so, subject to the following\n conditions:\n\n The above copyright notice and this permission notice shall be\n included in all copies or substantial portions of the Software.\n\n THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND,\n EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES\n OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND\n NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT\n HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,\n WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR\n OTHER DEALINGS IN THE SOFTWARE.\n\"\"\"\n\n__all__ = (\"S3CRUD\",)\n\ntry:\n import json # try stdlib (Python 2.6)\nexcept ImportError:\n try:\n import simplejson as json # try external module\n except:\n import gluon.contrib.simplejson as json # fallback to pure-Python module\n\ntry:\n from lxml import etree\nexcept ImportError:\n import sys\n print >> sys.stderr, \"ERROR: lxml module needed for XML handling\"\n raise\n\nfrom gluon import *\nfrom gluon.languages import lazyT\nfrom gluon.storage import Storage\nfrom gluon.tools import callback\n\nfrom s3datetime import S3DateTime\nfrom s3export import S3Exporter\nfrom s3forms import S3SQLDefaultForm\nfrom s3rest import S3Method\nfrom s3utils import s3_unicode, s3_validate, s3_represent_value, s3_set_extension\nfrom s3widgets import S3EmbeddedComponentWidget, S3Selector, ICON\n\n# Compact JSON encoding\nSEPARATORS = (\",\", \":\")\n\n# =============================================================================\n\n# END =========================================================================\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def create(self, r, **attr):\n \"\"\"\n Create new records\n\n @param r: the S3Request\n @param attr: dictionary of parameters for the method handler\n \"\"\"\n\n session = current.session\n request = self.request\n response = current.response\n\n resource = self.resource\n table = resource.table\n tablename = resource.tablename\n\n representation = r.representation\n\n output = dict()\n\n native = r.method == \"create\"\n\n # Get table configuration\n _config = self._config\n insertable = _config(\"insertable\", True)\n if not insertable:\n if native:\n r.error(405, current.ERROR.METHOD_DISABLED)\n else:\n return dict(form=None)\n\n authorised = self._permitted(method=\"create\")\n if not authorised:\n if native:\n r.unauthorised()\n else:\n return dict(form=None)\n\n # Get callbacks\n onvalidation = _config(\"create_onvalidation\") or \\\n _config(\"onvalidation\")\n onaccept = _config(\"create_onaccept\") or \\\n _config(\"onaccept\")\n\n if r.interactive:\n\n crud_string = self.crud_string\n\n # Page details\n if native:\n\n # Set view\n if representation in (\"popup\", \"iframe\"):\n response.view = self._view(r, \"popup.html\")\n output[\"caller\"] = request.vars.caller\n else:\n response.view = self._view(r, \"create.html\")\n\n # Title\n if r.component:\n title = crud_string(r.tablename, \"title_display\")\n output[\"title\"] = title\n else:\n title = crud_string(tablename, \"label_create\")\n output[\"title\"] = title\n output[\"title_list\"] = crud_string(tablename, \"title_list\")\n\n # Buttons\n buttons = self.render_buttons(r, [\"list\"], **attr)\n if buttons:\n output[\"buttons\"] = buttons\n\n # Component join\n link = None\n if r.component:\n if resource.link is None:\n # No link table - direct component\n link = self._embed_component(resource, record=r.id)\n pkey = resource.pkey\n fkey = resource.fkey\n field = table[fkey]\n value = r.record[pkey]\n field.comment = None\n field.default = value\n field.update = value\n if r.http == \"POST\":\n r.post_vars.update({fkey: value})\n field.readable = False\n field.writable = False\n else:\n link = Storage(resource=resource.link, master=r.record)\n\n get_vars = r.get_vars\n\n # Hierarchy parent\n hierarchy = None\n link_to_parent = get_vars.get(\"link_to_parent\")\n if link_to_parent:\n try:\n parent = long(link_to_parent)\n except ValueError:\n r.error(400, \"Invalid parent record ID: %s\" % link_to_parent)\n else:\n from s3hierarchy import S3Hierarchy\n h = S3Hierarchy(tablename)\n if h.config:\n try:\n hierarchy = h.preprocess_create_node(r, parent)\n except KeyError:\n import sys\n r.error(404, sys.exc_info()[1])\n\n # Copy record\n from_table = None\n from_record = get_vars.get(\"from_record\")\n map_fields = get_vars.get(\"from_fields\")\n\n if from_record:\n del get_vars[\"from_record\"] # forget it\n if from_record.find(\".\") != -1:\n from_table, from_record = from_record.split(\".\", 1)\n from_table = current.db.get(from_table, None)\n if not from_table:\n r.error(404, current.ERROR.BAD_RESOURCE)\n else:\n from_table = table\n try:\n from_record = long(from_record)\n except:\n r.error(404, current.ERROR.BAD_RECORD)\n authorised = current.auth.s3_has_permission(\"read\",\n from_table._tablename,\n from_record)\n if not authorised:\n r.unauthorised()\n if map_fields:\n del r.get_vars[\"from_fields\"]\n if map_fields.find(\"$\") != -1:\n mf = map_fields.split(\",\")\n mf = [f.find(\"$\") != -1 and f.split(\"$\") or \\\n [f, f] for f in mf]\n map_fields = Storage(mf)\n else:\n map_fields = map_fields.split(\",\")\n\n # Success message\n message = crud_string(self.tablename, \"msg_record_created\")\n\n # Copy formkey if un-deleting a duplicate\n if \"id\" in request.post_vars:\n post_vars = request.post_vars\n original = str(post_vars.id)\n formkey = session.get(\"_formkey[%s/None]\" % tablename)\n formname = \"%s/%s\" % (tablename, original)\n session[\"_formkey[%s]\" % formname] = formkey\n if \"deleted\" in table:\n table.deleted.writable = True\n post_vars[\"deleted\"] = False\n if \"created_on\" in table:\n table.created_on.writable = True\n post_vars[\"created_on\"] = request.utcnow\n if \"created_by\" in table:\n table.created_by.writable = True\n if current.auth.user:\n post_vars[\"created_by\"] = current.auth.user.id\n else:\n post_vars[\"created_by\"] = None\n post_vars[\"_undelete\"] = True\n post_vars[\"_formname\"] = formname\n post_vars[\"id\"] = original\n request.vars.update(**post_vars)\n else:\n original = None\n\n subheadings = _config(\"subheadings\")\n\n # Interim save button\n self._interim_save_button()\n\n # Default Cancel Button\n if r.representation == \"html\" and r.method == \"create\":\n self._default_cancel_button(r)\n\n # Get the form\n output[\"form\"] = self.sqlform(request=request,\n resource=resource,\n data=self.data,\n record_id=original,\n from_table=from_table,\n from_record=from_record,\n map_fields=map_fields,\n onvalidation=onvalidation,\n onaccept=onaccept,\n link=link,\n hierarchy=hierarchy,\n message=message,\n subheadings=subheadings,\n format=representation,\n )\n\n # Navigate-away confirmation\n if self.settings.navigate_away_confirm:\n response.s3.jquery_ready.append(\"S3EnableNavigateAwayConfirm()\")\n\n # Redirection\n if representation in (\"popup\", \"iframe\", \"plain\", \"dl\"):\n self.next = None\n else:\n if r.http == \"POST\" and \"interim_save\" in r.post_vars:\n next_vars = self._remove_filters(r.get_vars)\n create_next = r.url(target=\"[id]\", method=\"update\",\n vars=next_vars)\n elif r.http == \"POST\" and \"save_close\" in r.post_vars:\n create_next = _config(\"create_next_close\")\n elif session.s3.rapid_data_entry and not r.component:\n create_next = r.url()\n else:\n create_next = _config(\"create_next\")\n\n if not create_next:\n next_vars = self._remove_filters(r.get_vars)\n if r.component:\n self.next = r.url(method=\"\",\n vars=next_vars)\n else:\n self.next = r.url(id=\"[id]\",\n method=\"read\",\n vars=next_vars)\n elif callable(create_next):\n self.next = create_next(r)\n else:\n self.next = create_next\n\n elif representation == \"plain\":\n # NB formstyle will be \"table3cols\" so widgets need to support that\n # or else we need to be able to override this\n response.view = self._view(r, \"plain.html\")\n crud_string = self.crud_string\n message = crud_string(tablename, \"msg_record_created\")\n subheadings = _config(\"subheadings\")\n output[\"title\"] = crud_string(tablename, \"label_create\")\n output[\"details_btn\"] = \"\"\n output[\"item\"] = self.sqlform(request=request,\n resource=resource,\n data=self.data,\n onvalidation=onvalidation,\n onaccept=onaccept,\n #link=link,\n message=message,\n subheadings=subheadings,\n format=representation)\n\n elif representation == \"csv\":\n import cgi\n import csv\n csv.field_size_limit(1000000000)\n infile = request.vars.filename\n if isinstance(infile, cgi.FieldStorage) and infile.filename:\n infile = infile.file\n else:\n try:\n infile = open(infile, \"rb\")\n except:\n session.error = current.T(\"Cannot read from file: %(filename)s\") % \\\n dict(filename=infile)\n redirect(r.url(method=\"\", representation=\"html\"))\n try:\n self.import_csv(infile, table=table)\n except:\n session.error = current.T(\"Unable to parse CSV file or file contains invalid data\")\n else:\n session.confirmation = current.T(\"Data uploaded\")\n\n elif representation == \"pdf\":\n from s3pdf import S3PDF\n exporter = S3PDF()\n return exporter(r, **attr)\n\n elif representation == \"url\":\n results = self.import_url(r)\n return results\n\n else:\n r.error(415, current.ERROR.BAD_FORMAT)\n\n return output", "metadata": "root.S3CRUD.create", "header": "['class', 'S3CRUD', '(', 'S3Method', ')', ':', '___EOS___']", "index": 180 }, { "content": " def read(self, r, **attr):\n \"\"\"\n Read a single record\n\n @param r: the S3Request\n @param attr: dictionary of parameters for the method handler\n \"\"\"\n\n # Check authorization to read the record\n authorised = self._permitted()\n if not authorised:\n r.unauthorised()\n\n request = self.request\n response = current.response\n\n resource = self.resource\n table = resource.table\n tablename = resource.tablename\n\n representation = r.representation\n\n output = dict()\n\n _config = self._config\n editable = _config(\"editable\", True)\n\n # Get the target record ID\n record_id = self.record_id\n\n if r.interactive:\n\n # If this is a single-component and no record exists,\n # try to create one if the user is permitted\n if not record_id and r.component and not r.component.multiple:\n authorised = self._permitted(method=\"create\")\n if authorised:\n # This should become Native\n r.method = \"create\"\n return self.create(r, **attr)\n else:\n return self.select(r, **attr)\n\n # Redirect to update if user has permission unless\n # a method has been specified in the URL\n # MH: Is this really desirable? Many users would prefer to open as read\n if not r.method: #or r.method == \"review\":\n authorised = self._permitted(\"update\")\n if authorised and representation == \"html\" and editable:\n return self.update(r, **attr)\n\n # Form configuration\n subheadings = _config(\"subheadings\")\n\n # Title and subtitle\n crud_string = self.crud_string\n title = crud_string(r.tablename, \"title_display\")\n output[\"title\"] = title\n if r.component:\n subtitle = crud_string(tablename, \"title_display\")\n output[\"subtitle\"] = subtitle\n output[\"title_list\"] = crud_string(tablename, \"title_list\")\n\n # Item\n if record_id:\n try:\n item = self.sqlform(request=request,\n resource=resource,\n record_id=record_id,\n readonly=True,\n subheadings=subheadings,\n format=representation)\n except HTTP, e:\n message = current.ERROR.BAD_RECORD \\\n if e.status == 404 else e.message\n r.error(e.status, message)\n else:\n item = DIV(crud_string(tablename, \"msg_list_empty\"),\n _class=\"empty\")\n\n # View\n if representation == \"html\":\n response.view = self._view(r, \"display.html\")\n output[\"item\"] = item\n elif representation == \"popup\":\n response.view = self._view(r, \"popup.html\")\n output[\"form\"] = item\n caller = attr.get(\"caller\", None)\n output[\"caller\"] = caller\n elif representation == \"iframe\":\n response.view = self._view(r, \"iframe.html\")\n output[\"form\"] = item\n\n # Buttons\n buttons = self.render_buttons(r,\n [\"edit\", \"delete\", \"list\", \"summary\"],\n record_id=record_id,\n **attr)\n if buttons:\n output[\"buttons\"] = buttons\n\n # Last update\n last_update = self.last_update()\n if last_update:\n try:\n output[\"modified_on\"] = last_update[\"modified_on\"]\n except:\n # Field not in table\n pass\n try:\n output[\"modified_by\"] = last_update[\"modified_by\"]\n except:\n # Field not in table, such as auth_user\n pass\n\n # De-duplication\n from s3merge import S3Merge\n output[\"deduplicate\"] = S3Merge.bookmark(r, tablename, record_id)\n\n elif representation == \"plain\":\n # e.g. Map Popup\n T = current.T\n fields = [f for f in table if f.readable]\n if r.component:\n if record_id:\n record = current.db(table._id == record_id).select(limitby=(0, 1),\n *fields\n ).first()\n else:\n record = None\n else:\n record = r.record\n if record:\n # Hide empty fields from popups on map\n for field in fields:\n try:\n value = record[field]\n except:\n # e.g. gis_location.wkt\n value = None\n if value is None or value == \"\" or value == []:\n field.readable = False\n item = self.sqlform(request=request,\n resource=resource,\n record_id=record_id,\n readonly=True,\n format=representation)\n\n # Link to Open record\n popup_edit_url = _config(\"popup_edit_url\", None)\n if popup_edit_url and \\\n current.auth.s3_has_permission(\"update\", table, record_id):\n # Open edit form in iframe\n details_btn = A(T(\"Edit\"),\n _href=popup_edit_url,\n _class=\"btn iframe\",\n )\n output[\"details_btn\"] = details_btn\n else:\n # Open read view in new tab\n # Set popup_url to \"\" to have no button present\n popup_url = _config(\"popup_url\", None)\n if popup_url is None:\n popup_url = r.url(method=\"read\", representation=\"html\")\n if popup_url:\n details_btn = A(T(\"Open\"),\n _href=popup_url,\n _class=\"btn\",\n _target=\"_blank\",\n )\n output[\"details_btn\"] = details_btn\n\n # Title and subtitle\n title = self.crud_string(r.tablename, \"title_display\")\n output[\"title\"] = title\n\n else:\n item = T(\"Record not found\")\n\n output[\"item\"] = item\n response.view = self._view(r, \"plain.html\")\n\n elif representation == \"csv\":\n exporter = S3Exporter().csv\n output = exporter(resource)\n\n #elif representation == \"map\":\n # exporter = S3Map()\n # output = exporter(r, **attr)\n\n elif representation == \"pdf\":\n exporter = S3Exporter().pdf\n output = exporter(resource, request=r, **attr)\n\n elif representation == \"shp\":\n list_fields = resource.list_fields()\n exporter = S3Exporter().shp\n output = exporter(resource, list_fields=list_fields, **attr)\n\n elif representation == \"svg\":\n list_fields = resource.list_fields()\n exporter = S3Exporter().svg\n output = exporter(resource, list_fields=list_fields, **attr)\n\n elif representation == \"xls\":\n list_fields = resource.list_fields()\n exporter = S3Exporter().xls\n output = exporter(resource, list_fields=list_fields)\n\n elif representation == \"json\":\n exporter = S3Exporter().json\n\n # Render extra \"_tooltip\" field for each row?\n get_vars = request.get_vars\n if \"tooltip\" in get_vars:\n tooltip = get_vars[\"tooltip\"]\n else:\n tooltip = None\n\n output = exporter(resource, tooltip=tooltip)\n\n else:\n r.error(415, current.ERROR.BAD_FORMAT)\n\n return output", "metadata": "root.S3CRUD.read", "header": "['class', 'S3CRUD', '(', 'S3Method', ')', ':', '___EOS___']", "index": 553 }, { "content": " def update(self, r, **attr):\n \"\"\"\n Update a record\n\n @param r: the S3Request\n @param attr: dictionary of parameters for the method handler\n \"\"\"\n\n resource = self.resource\n table = resource.table\n tablename = resource.tablename\n\n representation = r.representation\n\n output = dict()\n\n # Get table configuration\n _config = self._config\n editable = _config(\"editable\", True)\n\n # Get callbacks\n onvalidation = _config(\"update_onvalidation\") or \\\n _config(\"onvalidation\")\n onaccept = _config(\"update_onaccept\") or \\\n _config(\"onaccept\")\n\n # Get the target record ID\n record_id = self.record_id\n if r.interactive and not record_id:\n r.error(404, current.ERROR.BAD_RECORD)\n\n # Check if editable\n if not editable:\n if r.interactive:\n return self.read(r, **attr)\n else:\n r.error(405, current.ERROR.METHOD_DISABLED)\n\n # Check permission for update\n authorised = self._permitted(method=\"update\")\n if not authorised:\n r.unauthorised()\n\n if r.interactive or representation == \"plain\":\n\n response = current.response\n s3 = response.s3\n\n # Form configuration\n subheadings = _config(\"subheadings\")\n\n # Set view\n if representation == \"html\":\n response.view = self._view(r, \"update.html\")\n elif representation in \"popup\":\n response.view = self._view(r, \"popup.html\")\n elif representation == \"plain\":\n response.view = self._view(r, \"plain.html\")\n elif representation == \"iframe\":\n response.view = self._view(r, \"iframe.html\")\n\n # Title and subtitle\n crud_string = self.crud_string\n if r.component:\n title = crud_string(r.tablename, \"title_display\")\n subtitle = crud_string(self.tablename, \"title_update\")\n output[\"title\"] = title\n output[\"subtitle\"] = subtitle\n else:\n title = crud_string(self.tablename, \"title_update\")\n output[\"title\"] = title\n output[\"title_list\"] = crud_string(tablename, \"title_list\")\n\n # Component join\n link = None\n if r.component:\n if resource.link is None:\n link = self._embed_component(resource, record=r.id)\n pkey = resource.pkey\n fkey = resource.fkey\n field = table[fkey]\n value = r.record[pkey]\n field.comment = None\n field.default = value\n field.update = value\n if r.http == \"POST\":\n r.post_vars.update({fkey: value})\n field.readable = False\n field.writable = False\n else:\n link = Storage(resource=resource.link, master=r.record)\n\n # Success message\n message = crud_string(self.tablename, \"msg_record_modified\")\n\n # Interim save button\n self._interim_save_button()\n\n # Default Cancel Button\n if r.representation == \"html\" and \\\n (r.method == \"update\" or not r.method):\n self._default_cancel_button(r)\n\n # Get the form\n try:\n form = self.sqlform(request=self.request,\n resource=resource,\n record_id=record_id,\n onvalidation=onvalidation,\n onaccept=onaccept,\n message=message,\n link=link,\n subheadings=subheadings,\n format=representation)\n except HTTP, e:\n message = current.ERROR.BAD_RECORD \\\n if e.status == 404 else e.message\n r.error(e.status, message)\n\n # Navigate-away confirmation\n if self.settings.navigate_away_confirm:\n s3.jquery_ready.append(\"S3EnableNavigateAwayConfirm()\")\n\n # Put form into output\n output[\"form\"] = form\n if representation == \"plain\":\n output[\"item\"] = form\n output[\"title\"] = \"\"\n\n # Add delete and list buttons\n buttons = self.render_buttons(r,\n [\"delete\"],\n record_id=record_id,\n **attr)\n if buttons:\n output[\"buttons\"] = buttons\n\n # Last update\n last_update = self.last_update()\n if last_update:\n try:\n output[\"modified_on\"] = last_update[\"modified_on\"]\n except:\n # Field not in table\n pass\n try:\n output[\"modified_by\"] = last_update[\"modified_by\"]\n except:\n # Field not in table, such as auth_user\n pass\n\n # De-duplication\n from s3merge import S3Merge\n output[\"deduplicate\"] = S3Merge.bookmark(r, tablename, record_id)\n\n # Redirection\n if r.http == \"POST\" and \"interim_save\" in r.post_vars:\n next_vars = self._remove_filters(r.get_vars)\n self.next = r.url(target=\"[id]\", method=\"update\",\n vars=next_vars)\n else:\n update_next = _config(\"update_next\")\n if representation in (\"popup\", \"iframe\", \"plain\", \"dl\"):\n self.next = None\n elif not update_next:\n next_vars = self._remove_filters(r.get_vars)\n if r.component:\n self.next = r.url(method=\"\", vars=next_vars)\n else:\n self.next = r.url(id=\"[id]\",\n method=\"read\",\n vars=next_vars)\n else:\n try:\n self.next = update_next(self)\n except TypeError:\n self.next = update_next\n\n elif representation == \"url\":\n return self.import_url(r)\n\n else:\n r.error(415, current.ERROR.BAD_FORMAT)\n\n return output", "metadata": "root.S3CRUD.update", "header": "['class', 'S3CRUD', '(', 'S3Method', ')', ':', '___EOS___']", "index": 780 }, { "content": " def review(self, r, **attr):\n \"\"\"\n Review/approve/reject an unapproved record.\n\n @param r: the S3Request\n @param attr: dictionary of parameters for the method handler\n \"\"\"\n\n if not self._permitted(\"review\"):\n r.unauthorized()\n\n T = current.T\n\n session = current.session\n response = current.response\n\n output = Storage()\n if r.interactive:\n\n _next = r.url(id=\"[id]\", method=\"review\")\n\n if self._permitted(\"approve\"):\n\n approve = FORM(INPUT(_value=T(\"Approve\"),\n _type=\"submit\",\n _name=\"approve-btn\",\n _id=\"approve-btn\",\n _class=\"action-btn\"))\n\n reject = FORM(INPUT(_value=T(\"Reject\"),\n _type=\"submit\",\n _name=\"reject-btn\",\n _id=\"reject-btn\",\n _class=\"action-btn\"))\n\n edit = A(T(\"Edit\"),\n _href=r.url(id=r.id, method=\"update\",\n vars={\"_next\": r.url(id=r.id, method=\"review\")}),\n _class=\"action-btn\")\n\n cancel = A(T(\"Cancel\"),\n _href=r.url(id=0),\n _class=\"action-lnk\")\n\n output[\"approve_form\"] = DIV(TABLE(TR(approve, reject, edit, cancel)),\n _id=\"approve_form\")\n\n reviewing = False\n if approve.accepts(r.post_vars, session, formname=\"approve\"):\n resource = current.s3db.resource(r.tablename, r.id,\n approved=False,\n unapproved=True)\n try:\n success = resource.approve()\n except:\n success = False\n if success:\n response.confirmation = T(\"Record approved\")\n output[\"approve_form\"] = \"\"\n else:\n response.warning = T(\"Record could not be approved.\")\n\n r.http = \"GET\"\n _next = r.url(id=0, method=\"review\")\n\n elif reject.accepts(r.post_vars, session, formname=\"reject\"):\n resource = current.s3db.resource(r.tablename, r.id,\n approved=False,\n unapproved=True)\n try:\n success = resource.reject()\n except:\n success = False\n if success:\n response.confirmation = T(\"Record deleted\")\n output[\"approve_form\"] = \"\"\n else:\n response.warning = T(\"Record could not be deleted.\")\n\n r.http = \"GET\"\n _next = r.url(id=0, method=\"review\")\n\n else:\n reviewing = True\n\n if reviewing:\n output.update(self.read(r, **attr))\n self.next = _next\n r.http = r.env.request_method\n current.response.view = \"review.html\"\n\n else:\n r.error(415, current.ERROR.BAD_FORMAT)\n\n return output", "metadata": "root.S3CRUD.review", "header": "['class', 'S3CRUD', '(', 'S3Method', ')', ':', '___EOS___']", "index": 1892 }, { "content": " def validate(self, r, **attr):\n \"\"\"\n Validate records (AJAX). This method reads a JSON object from\n the request body, validates it against the current resource,\n and returns a JSON object with either the validation errors or\n the text representations of the data.\n\n @param r: the S3Request\n @param attr: dictionary of parameters for the method handler\n\n Input JSON format:\n\n {\"<fieldname>\":\"<value>\", \"<fieldname>\":\"<value>\"}\n\n Output JSON format:\n\n {\"<fieldname>\": {\"value\":\"<value>\",\n \"text\":\"<representation>\",\n \"_error\":\"<error message>\"}}\n\n The input JSON can also be a list of multiple records. This\n will return a list of results accordingly. Note that \"text\"\n is not provided if there was a validation error, and vice\n versa.\n\n The record ID should always be present in the JSON to\n avoid false duplicate errors.\n\n Non-existent fields will return \"invalid field\" as _error.\n\n Representations will be URL-escaped and any markup stripped.\n\n The ?component=<alias> URL query can be used to specify a\n component of the current resource rather than the main table.\n\n This method does only accept .json format.\n \"\"\"\n\n if r.representation != \"json\":\n r.error(415, current.ERROR.BAD_FORMAT)\n\n resource = self.resource\n\n get_vars = r.get_vars\n if \"component\" in get_vars:\n alias = get_vars[\"component\"]\n else:\n alias = None\n if \"resource\" in get_vars:\n tablename = get_vars[\"resource\"]\n\n # Customise the resource\n customise = current.deployment_settings.customise_resource(tablename)\n if customise:\n customise(r, tablename)\n\n components = [alias] if alias else None\n try:\n resource = current.s3db.resource(tablename,\n components=components)\n except:\n r.error(404, current.ERROR.BAD_RESOURCE)\n if alias:\n if alias in resource.components:\n component = resource.components[alias]\n else:\n r.error(404, current.ERROR.BAD_RESOURCE)\n else:\n component = resource\n\n source = r.body\n source.seek(0)\n\n try:\n data = json.load(source)\n except ValueError:\n r.error(501, current.ERROR.BAD_SOURCE)\n\n if not isinstance(data, list):\n single = True\n data = [data]\n else:\n single = False\n\n table = component.table\n pkey = table._id.name\n\n get_config = current.s3db.get_config\n tablename = component.tablename\n onvalidation = get_config(tablename, \"onvalidation\")\n update_onvalidation = get_config(tablename, \"update_onvalidation\",\n onvalidation)\n create_onvalidation = get_config(tablename, \"create_onvalidation\",\n onvalidation)\n\n output = []\n for record in data:\n\n has_errors = False\n\n # Retrieve the record ID\n if pkey in record:\n original = {pkey: record[pkey]}\n elif \"_id\" in record:\n original = {pkey: record[\"_id\"]}\n else:\n original = None\n\n # Field validation\n fields = Storage()\n for fname in record:\n\n error = None\n validated = fields[fname] = Storage()\n\n # We do not validate primary keys\n # (because we don't update them)\n if fname in (pkey, \"_id\"):\n continue\n\n value = record[fname]\n\n if fname not in table.fields:\n validated[\"value\"] = value\n validated[\"_error\"] = \"invalid field\"\n continue\n else:\n field = table[fname]\n\n # Convert numeric type (does not always happen in the widget)\n field = table[fname]\n if field.type == \"integer\":\n if value not in (None, \"\"):\n try:\n value = int(value)\n except ValueError:\n value = 0\n else:\n value = None\n if field.type == \"double\":\n if value not in (None, \"\"):\n try:\n value = float(value)\n except ValueError:\n value = 0\n else:\n value = None\n\n widget = field.widget\n if isinstance(widget, S3Selector):\n # Use widget-validator instead of field-validator\n value, error = widget.validate(value,\n requires=field.requires,\n )\n validated[\"value\"] = widget.serialize(value)\n # Use widget-represent instead of standard represent\n widget_represent = widget.represent\n else:\n # Validate and format the value\n try:\n value, error = s3_validate(table, fname, value, original)\n except AttributeError:\n error = \"invalid field\"\n validated[\"value\"] = field.formatter(value)\n widget_represent = None\n\n # Handle errors, update the validated item\n if error:\n has_errors = True\n validated[\"_error\"] = s3_unicode(error)\n elif widget_represent:\n try:\n text = widget_represent(value)\n except:\n text = s3_unicode(value)\n validated[\"text\"] = text\n else:\n try:\n text = s3_represent_value(field, value = value)\n except:\n text = s3_unicode(value)\n validated[\"text\"] = text\n\n # Form validation (=onvalidation)\n if not has_errors:\n if original is not None:\n onvalidation = update_onvalidation\n else:\n onvalidation = create_onvalidation\n form = Storage(vars=Storage(record), errors=Storage())\n if onvalidation is not None:\n callback(onvalidation, form, tablename=tablename)\n for fn in form.errors:\n msg = s3_unicode(form.errors[fn])\n if fn in fields:\n validated = fields[fn]\n has_errors = True\n validated._error = msg\n if \"text\" in validated:\n del validated[\"text\"]\n else:\n msg = \"%s: %s\" % (fn, msg)\n if \"_error\" in fields:\n fields[\"_error\"] = \"\\n\".join([msg,\n fields[\"_error\"]])\n else:\n fields[\"_error\"] = msg\n\n output.append(fields)\n\n if single and len(output) == 1:\n output = output[0]\n\n return json.dumps(output, separators=SEPARATORS)", "metadata": "root.S3CRUD.validate", "header": "['class', 'S3CRUD', '(', 'S3Method', ')', ':', '___EOS___']", "index": 1989 }, { "content": " def _postprocess_embedded(self, form,\n component=None,\n key=None):\n \"\"\"\n Post-processes a form with an S3EmbeddedComponentWidget and\n created/updates the component record.\n\n @param form: the form\n @param component: the component tablename\n @param key: the field name of the foreign key for the component\n in the link table\n \"\"\"\n\n s3db = current.s3db\n request = current.request\n\n get_config = lambda key, tablename=component: \\\n s3db.get_config(tablename, key, None)\n try:\n selected = form.vars[key]\n except:\n selected = None\n\n if request.env.request_method == \"POST\":\n db = current.db\n table = db[component]\n\n # Extract data for embedded form from post_vars\n post_vars = request.post_vars\n form_vars = Storage(table._filter_fields(post_vars))\n\n # Pass values through validator to convert them into db-format\n for k in form_vars:\n value, error = s3_validate(table, k, form_vars[k])\n if not error:\n form_vars[k] = value\n\n _form = Storage(vars = form_vars, errors = Storage())\n if _form.vars:\n if selected:\n form_vars[table._id.name] = selected\n # Onvalidation\n onvalidation = get_config(\"update_onvalidation\") or \\\n get_config(\"onvalidation\")\n callback(onvalidation, _form, tablename=component)\n # Update the record if no errors\n if not _form.errors:\n db(table._id == selected).update(**_form.vars)\n else:\n form.errors.update(_form.errors)\n return\n # Update super-entity links\n s3db.update_super(table, dict(id=selected))\n # Update realm\n update_realm = s3db.get_config(table, \"update_realm\")\n if update_realm:\n current.auth.set_realm_entity(table, selected,\n force_update=True)\n # Onaccept\n onaccept = get_config(\"update_onaccept\") or \\\n get_config(\"onaccept\")\n callback(onaccept, _form, tablename=component)\n else:\n form_vars.pop(table._id.name, None)\n # Onvalidation\n onvalidation = get_config(\"create_onvalidation\") or \\\n get_config(\"onvalidation\")\n callback(onvalidation, _form, tablename=component)\n # Insert the record if no errors\n if not _form.errors:\n selected = table.insert(**_form.vars)\n else:\n form.errors.update(_form.errors)\n return\n if selected:\n # Update post_vars and form.vars\n post_vars[key] = str(selected)\n form.request_vars[key] = str(selected)\n form.vars[key] = selected\n # Update super-entity links\n s3db.update_super(table, dict(id=selected))\n # Set record owner\n auth = current.auth\n auth.s3_set_record_owner(table, selected)\n auth.s3_make_session_owner(table, selected)\n # Onaccept\n onaccept = get_config(\"create_onaccept\") or \\\n get_config(\"onaccept\")\n callback(onaccept, _form, tablename=component)\n else:\n form.errors[key] = current.T(\"Could not create record.\")\n return", "metadata": "root.S3CRUD._postprocess_embedded", "header": "['class', 'S3CRUD', '(', 'S3Method', ')', ':', '___EOS___']", "index": 2819 } ]

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[ { "content": "from __future__ import division # for proper float division\n\nimport os\nimport sys\nimport math\nimport time\nimport types\nimport functools\nimport random\nimport numpy as np\nfrom director import ik\nfrom director import ikconstraints\nfrom director import ikconstraintencoder\nimport drc as lcmdrc\nimport json\nfrom director.utime import getUtime\nfrom director import lcmUtils\nfrom director import robotstate\n\n\n\nimport ikplanner\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class PlannerPublisher(object):\n\n\n\n\n\n\n\n", "metadata": "root.PlannerPublisher", "header": "['module', '___EOS___']", "index": 20 }, { "content": " def __init__(self, ikPlanner, affordanceMan,robotModel):\n self.ikPlanner = ikPlanner\n self.affordanceManager = affordanceMan\n self.poses={}\n self.robotModel=robotModel\n self.jointLimits={}\n for jointName in robotstate.getDrakePoseJointNames():\n self.jointLimits[jointName]= [self.robotModel.model.getJointLimits(jointName)[0],self.robotModel.model.getJointLimits(jointName)[1]]", "metadata": "root.PlannerPublisher.__init__", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 22 }, { "content": " def updateJointLimits(self, limitData):\n for jointName, epsilon, jointPosition in limitData:\n if epsilon < 0:\n self.jointLimits[jointName][0]=jointPosition\n else:\n self.jointLimits[jointName][1]=jointPosition\n print limitData\n print self.jointLimits", "metadata": "root.PlannerPublisher.updateJointLimits", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 31 }, { "content": " def setupMessage(self, constraints, endPoseName=\"\", nominalPoseName=\"\", seedPoseName=\"\", additionalTimeSamples=None):\n poses = ikconstraintencoder.getPlanPoses(constraints, self.ikPlanner)\n poses.update(self.poses)\n msg = lcmdrc.exotica_planner_request_t()\n msg.utime = getUtime()\n msg.poses = json.dumps(poses)\n msg.constraints = ikconstraintencoder.encodeConstraints(constraints)\n msg.seed_pose = seedPoseName\n msg.nominal_pose = nominalPoseName\n msg.end_pose = endPoseName\n msg.joint_names = json.dumps(list(self.ikPlanner.jointController.jointNames))\n msg.affordances = self.processAffordances()\n opt=ikplanner.getIkOptions()._properties\n if additionalTimeSamples:\n opt.update({'timeSamples':additionalTimeSamples})\n opt['jointLimits']=self.jointLimits\n msg.options = json.dumps(opt)\n return msg", "metadata": "root.PlannerPublisher.setupMessage", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 40 }, { "content": " def processIK(self, constraints, endPoseName=\"\", nominalPoseName=\"\", seedPoseName=\"\", additionalTimeSamples=None):\n listener = self.ikPlanner.getManipIKListener()\n msg = self.setupMessage(constraints, endPoseName, nominalPoseName, seedPoseName, additionalTimeSamples)\n lcmUtils.publish('IK_REQUEST', msg)\n ikplan = listener.waitForResponse(timeout=12000)\n listener.finish()\n\n endPose = [0] * self.ikPlanner.jointController.numberOfJoints\n if ikplan.num_states>0:\n endPose[len(endPose)-len(ikplan.plan[ikplan.num_states-1].joint_position):] = ikplan.plan[ikplan.num_states-1].joint_position\n info=ikplan.plan_info[ikplan.num_states-1]\n else: \n info = -1\n self.ikPlanner.ikServer.infoFunc(info)\n return endPose, info", "metadata": "root.PlannerPublisher.processIK", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 59 }, { "content": " def processTraj(self, constraints, endPoseName=\"\", nominalPoseName=\"\", seedPoseName=\"\", additionalTimeSamples=None):\n # Temporary fix / HACK / TODO (should be done in exotica_json)\n largestTspan = [0, 0]\n for constraintIndex, _ in enumerate(constraints):\n # Get tspan extend to normalise time-span\n if np.isfinite(constraints[constraintIndex].tspan[0]) and np.isfinite(constraints[constraintIndex].tspan[1]):\n largestTspan[0] = constraints[constraintIndex].tspan[0] if (constraints[constraintIndex].tspan[0] < largestTspan[0]) else largestTspan[0]\n largestTspan[1] = constraints[constraintIndex].tspan[1] if (constraints[constraintIndex].tspan[1] > largestTspan[1]) else largestTspan[1]\n\n # Temporary fix / HACK/ TODO to normalise time spans\n for constraintIndex, _ in enumerate(constraints):\n if np.isfinite(constraints[constraintIndex].tspan[0]) and np.isfinite(constraints[constraintIndex].tspan[1]):\n if largestTspan[1] != 0:\n constraints[constraintIndex].tspan[0] = constraints[constraintIndex].tspan[0] / largestTspan[1]\n constraints[constraintIndex].tspan[1] = constraints[constraintIndex].tspan[1] / largestTspan[1]\n\n listener = self.ikPlanner.getManipPlanListener()\n msg = self.setupMessage(constraints, endPoseName, nominalPoseName, seedPoseName, additionalTimeSamples)\n lcmUtils.publish('PLANNER_REQUEST', msg)\n lastManipPlan = listener.waitForResponse(timeout=20000)\n listener.finish()\n\n self.ikPlanner.ikServer.infoFunc(lastManipPlan.plan_info[0])\n return lastManipPlan, lastManipPlan.plan_info[0]", "metadata": "root.PlannerPublisher.processTraj", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 75 }, { "content": " def processAddPose(self, pose, poseName):\n self.poses[poseName]=list(pose);", "metadata": "root.PlannerPublisher.processAddPose", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 100 }, { "content": " def processAffordances(self):\n affs = self.affordanceManager.getCollisionAffordances()\n s='['\n first=True\n for aff in affs:\n des=aff.getDescription()\n classname=des['classname'];\n if first:\n s+='{'\n else:\n s+='\\n,{'\n first=False\n s+='\"classname\":\"'+classname+'\"'\n s+=',\"name\":\"'+des['Name']+'\"'\n s+=',\"uuid\":\"'+des['uuid']+'\"'\n s+=',\"pose\": {\"position\":{\"__ndarray__\":'+repr(des['pose'][0].tolist())+'},\"quaternion\":{\"__ndarray__\":'+repr(des['pose'][1].tolist())+'}}'\n if self.affordanceManager.affordanceUpdater is not None: # attached collision object / frameSync\n if des['Name'] in self.affordanceManager.affordanceUpdater.attachedAffordances:\n s+=',\"attachedTo\":\"'+self.affordanceManager.affordanceUpdater.attachedAffordances[des['Name']]+'\"'\n else: # it's not attached\n s+=',\"attachedTo\":\"__world__\"' # __world__ means it's a fixed collision object (sometimes called world or map - we use __world__ here)\n else: # no affordanceUpdater - so no attached collision objects either\n s+=',\"attachedTo\":\"__world__\"'\n if classname=='MeshAffordanceItem':\n s+=',\"filename\":\"'+aff.getMeshManager().getFilesystemFilename(des['Filename'])+'\"'\n if classname=='SphereAffordanceItem':\n s+=',\"radius\":'+repr(des['Radius'])\n if classname=='CylinderAffordanceItem' or classname=='CapsuleAffordanceItem':\n s+=',\"radius\":'+repr(des['Radius'])\n s+=',\"length\":'+repr(des['Length'])\n if classname=='BoxAffordanceItem':\n s+=',\"dimensions\":'+repr(des['Dimensions'])\n if classname=='CapsuleRingAffordanceItem':\n s+=',\"radius\":'+repr(des['Radius'])\n s+=',\"tube_radius\":'+repr(des['Tube Radius'])\n s+=',\"segments\":'+repr(des['Segments'])\n s+='}'\n s=s+']'\n return s", "metadata": "root.PlannerPublisher.processAffordances", "header": "['class', 'PlannerPublisher', '(', 'object', ')', ':', '___EOS___']", "index": 104 } ]

[ { "span": "import os", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 9 }, { "span": "import sys", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 10 }, { "span": "import math", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 11 }, { "span": "import time", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 11 }, { "span": "import types", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 12 }, { "span": "import functools", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 16 }, { "span": "import random", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 13 }, { "span": "from director import ik", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 23 }, { "span": "from director import ikconstraints", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 34 } ]

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[ { "content": "\"\"\"\nCopyright (c) 2015 Red Hat, Inc\nAll rights reserved.\n\nThis software may be modified and distributed under the terms\nof the BSD license. See the LICENSE file for details.\n\"\"\"\n\nfrom __future__ import print_function, unicode_literals\n\nimport os\nimport json\nimport time\nfrom datetime import datetime, timedelta\nfrom copy import deepcopy\n\nfrom flexmock import flexmock\nfrom osbs.api import OSBS\nimport osbs.conf\nfrom atomic_reactor.inner import DockerBuildWorkflow\nfrom atomic_reactor.plugin import ExitPluginsRunner\nfrom atomic_reactor.plugins.post_rpmqa import PostBuildRPMqaPlugin\n\nfrom atomic_reactor.plugins.exit_store_metadata_in_osv3 import StoreMetadataInOSv3Plugin\nfrom atomic_reactor.plugins.exit_koji_promote import KojiPromotePlugin\nfrom atomic_reactor.plugins.pre_cp_dockerfile import CpDockerfilePlugin\nfrom atomic_reactor.plugins.pre_pyrpkg_fetch_artefacts import DistgitFetchArtefactsPlugin\nfrom atomic_reactor.util import ImageName, LazyGit\nimport pytest\nfrom tests.constants import LOCALHOST_REGISTRY, DOCKER0_REGISTRY, TEST_IMAGE, INPUT_IMAGE\nfrom tests.util import is_string_type\n\nDIGEST1 = \"sha256:1da9b9e1c6bf6ab40f1627d76e2ad58e9b2be14351ef4ff1ed3eb4a156138189\"\nDIGEST2 = \"sha256:0000000000000000000000000000000000000000000000000000000000000000\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Y(object):\n pass", "metadata": "root.Y", "header": "['module', '___EOS___']", "index": 36 }, { "content": "class X(object):\n image_id = INPUT_IMAGE\n source = Y()\n source.dockerfile_path = None\n source.path = None\n base_image = ImageName(repo=\"qwe\", tag=\"asd\")\n # image = ImageName.parse(\"test-image:unique_tag_123\")", "metadata": "root.X", "header": "['module', '___EOS___']", "index": 40 }, { "content": "def prepare():\n def set_annotations_on_build(build_id, labels):\n pass\n def update_labels_on_build(build_id, labels):\n pass\n new_environ = deepcopy(os.environ)\n new_environ[\"BUILD\"] = '''\n{\n \"metadata\": {\n \"name\": \"asd\",\n \"namespace\": \"namespace\"\n }\n}\n'''\n flexmock(OSBS, set_annotations_on_build=set_annotations_on_build)\n flexmock(OSBS, update_labels_on_build=update_labels_on_build)\n (flexmock(osbs.conf)\n .should_call(\"Configuration\")\n .with_args(namespace=\"namespace\", conf_file=None, verify_ssl=True,\n openshift_url=\"http://example.com/\", openshift_uri=\"http://example.com/\",\n use_auth=True))\n flexmock(os)\n os.should_receive(\"environ\").and_return(new_environ)\n\n workflow = DockerBuildWorkflow({\"provider\": \"git\", \"uri\": \"asd\"}, \"test-image\")\n\n workflow.push_conf.add_pulp_registry(\"test\", LOCALHOST_REGISTRY)\n workflow.tag_conf.add_primary_image(TEST_IMAGE)\n workflow.tag_conf.add_unique_image(\"namespace/image:asd123\")\n\n r = workflow.push_conf.add_docker_registry(DOCKER0_REGISTRY)\n r.digests[TEST_IMAGE] = DIGEST1\n r.digests[\"namespace/image:asd123\"] = DIGEST2\n\n setattr(workflow, 'builder', X)\n setattr(workflow, '_base_image_inspect', {'Id': '01234567'})\n workflow.build_logs = [\n \"a\", \"b\",\n ]\n workflow.source.lg = LazyGit(None, commit=\"commit\")\n flexmock(workflow.source.lg)\n workflow.source.lg.should_receive(\"_commit_id\").and_return(\"commit\")\n\n return workflow", "metadata": "root.prepare", "header": "['module', '___EOS___']", "index": 49 }, { "content": "def test_metadata_plugin(tmpdir):\n initial_timestamp = datetime.now()\n workflow = prepare()\n\n workflow.prebuild_results = {\n CpDockerfilePlugin.key: \"dockerfile-content\",\n DistgitFetchArtefactsPlugin.key: \"artefact1\\nartefact2\",\n }\n workflow.postbuild_results = {\n PostBuildRPMqaPlugin.key: \"rpm1\\nrpm2\",\n }\n workflow.plugins_timestamps = {\n CpDockerfilePlugin.key: initial_timestamp.isoformat(),\n DistgitFetchArtefactsPlugin.key: (initial_timestamp + timedelta(seconds=1)).isoformat(),\n PostBuildRPMqaPlugin.key: (initial_timestamp + timedelta(seconds=3)).isoformat(),\n }\n workflow.plugins_durations = {\n CpDockerfilePlugin.key: 1.01,\n DistgitFetchArtefactsPlugin.key: 2.02,\n PostBuildRPMqaPlugin.key: 3.03,\n }\n workflow.plugins_errors = {\n DistgitFetchArtefactsPlugin.key: 'foo'\n }\n\n runner = ExitPluginsRunner(\n None,\n workflow,\n [{\n 'name': StoreMetadataInOSv3Plugin.key,\n \"args\": {\n \"url\": \"http://example.com/\"\n }\n }]\n )\n output = runner.run()\n assert StoreMetadataInOSv3Plugin.key in output\n labels = output[StoreMetadataInOSv3Plugin.key][\"annotations\"]\n assert \"dockerfile\" in labels\n assert is_string_type(labels['dockerfile'])\n assert \"artefacts\" in labels\n assert is_string_type(labels['artefacts'])\n assert \"logs\" in labels\n assert is_string_type(labels['logs'])\n assert labels['logs'] == ''\n assert \"rpm-packages\" in labels\n assert is_string_type(labels['rpm-packages'])\n assert labels['rpm-packages'] == ''\n assert \"repositories\" in labels\n assert is_string_type(labels['repositories'])\n assert \"commit_id\" in labels\n assert is_string_type(labels['commit_id'])\n assert \"base-image-id\" in labels\n assert is_string_type(labels['base-image-id'])\n assert \"base-image-name\" in labels\n assert is_string_type(labels['base-image-name'])\n assert \"image-id\" in labels\n assert is_string_type(labels['image-id'])\n\n assert \"digests\" in labels\n assert is_string_type(labels['digests'])\n digests = json.loads(labels['digests'])\n expected = [{\n \"registry\": LOCALHOST_REGISTRY,\n \"repository\": TEST_IMAGE,\n \"tag\": 'latest',\n \"digest\": DIGEST1,\n },{\n \"registry\": LOCALHOST_REGISTRY,\n \"repository\": \"namespace/image\",\n \"tag\": 'asd123',\n \"digest\": DIGEST2,\n }]\n assert digests == expected or digests == reversed(expected)\n\n assert \"plugins-metadata\" in labels\n assert \"errors\" in labels[\"plugins-metadata\"]\n assert \"durations\" in labels[\"plugins-metadata\"]\n assert \"timestamps\" in labels[\"plugins-metadata\"]\n\n plugins_metadata = json.loads(labels[\"plugins-metadata\"])\n assert \"distgit_fetch_artefacts\" in plugins_metadata[\"errors\"]\n\n assert \"cp_dockerfile\" in plugins_metadata[\"durations\"]\n assert \"distgit_fetch_artefacts\" in plugins_metadata[\"durations\"]\n assert \"all_rpm_packages\" in plugins_metadata[\"durations\"]", "metadata": "root.test_metadata_plugin", "header": "['module', '___EOS___']", "index": 95 }, { "content": "def test_metadata_plugin_rpmqa_failure(tmpdir):\n initial_timestamp = datetime.now()\n workflow = prepare()\n\n workflow.prebuild_results = {\n CpDockerfilePlugin.key: \"dockerfile-content\",\n DistgitFetchArtefactsPlugin.key: \"artefact1\\nartefact2\",\n }\n workflow.postbuild_results = {\n PostBuildRPMqaPlugin.key: RuntimeError(),\n }\n workflow.plugins_timestamps = {\n CpDockerfilePlugin.key: initial_timestamp.isoformat(),\n DistgitFetchArtefactsPlugin.key: (initial_timestamp + timedelta(seconds=1)).isoformat(),\n PostBuildRPMqaPlugin.key: (initial_timestamp + timedelta(seconds=3)).isoformat(),\n }\n workflow.plugins_durations = {\n CpDockerfilePlugin.key: 1.01,\n DistgitFetchArtefactsPlugin.key: 2.02,\n PostBuildRPMqaPlugin.key: 3.03,\n }\n workflow.plugins_errors = {\n PostBuildRPMqaPlugin.key: 'foo'\n }\n\n runner = ExitPluginsRunner(\n None,\n workflow,\n [{\n 'name': StoreMetadataInOSv3Plugin.key,\n \"args\": {\n \"url\": \"http://example.com/\"\n }\n }]\n )\n output = runner.run()\n assert StoreMetadataInOSv3Plugin.key in output\n labels = output[StoreMetadataInOSv3Plugin.key][\"annotations\"]\n assert \"dockerfile\" in labels\n assert \"artefacts\" in labels\n assert \"logs\" in labels\n assert \"rpm-packages\" in labels\n assert \"repositories\" in labels\n assert \"commit_id\" in labels\n assert \"base-image-id\" in labels\n assert \"base-image-name\" in labels\n assert \"image-id\" in labels\n\n # On rpmqa failure, rpm-packages should be empty\n assert len(labels[\"rpm-packages\"]) == 0\n\n assert \"plugins-metadata\" in labels\n assert \"errors\" in labels[\"plugins-metadata\"]\n assert \"durations\" in labels[\"plugins-metadata\"]\n assert \"timestamps\" in labels[\"plugins-metadata\"]\n\n plugins_metadata = json.loads(labels[\"plugins-metadata\"])\n assert \"all_rpm_packages\" in plugins_metadata[\"errors\"]\n\n assert \"cp_dockerfile\" in plugins_metadata[\"durations\"]\n assert \"distgit_fetch_artefacts\" in plugins_metadata[\"durations\"]\n assert \"all_rpm_packages\" in plugins_metadata[\"durations\"]", "metadata": "root.test_metadata_plugin_rpmqa_failure", "header": "['module', '___EOS___']", "index": 183 }, { "content": "def test_labels_metadata_plugin(tmpdir):\n\n koji_build_id = \"1234\"\n workflow = prepare()\n\n workflow.exit_results = {\n KojiPromotePlugin.key: koji_build_id,\n }\n\n runner = ExitPluginsRunner(\n None,\n workflow,\n [{\n 'name': StoreMetadataInOSv3Plugin.key,\n \"args\": {\n \"url\": \"http://example.com/\"\n }\n }]\n )\n output = runner.run()\n assert StoreMetadataInOSv3Plugin.key in output\n labels = output[StoreMetadataInOSv3Plugin.key][\"labels\"]\n assert \"koji-build-id\" in labels\n assert labels[\"koji-build-id\"] == koji_build_id", "metadata": "root.test_labels_metadata_plugin", "header": "['module', '___EOS___']", "index": 246 }, { "content": "def test_missing_koji_build_id(tmpdir):\n workflow = prepare()\n\n workflow.exit_results = {}\n\n runner = ExitPluginsRunner(\n None,\n workflow,\n [{\n 'name': StoreMetadataInOSv3Plugin.key,\n \"args\": {\n \"url\": \"http://example.com/\"\n }\n }]\n )\n output = runner.run()\n assert StoreMetadataInOSv3Plugin.key in output\n labels = output[StoreMetadataInOSv3Plugin.key][\"labels\"]\n assert \"koji-build-id\" not in labels", "metadata": "root.test_missing_koji_build_id", "header": "['module', '___EOS___']", "index": 271 } ]

[ { "span": "import time", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 11 }, { "span": "import pytest", "start_line": 28, "start_column": 0, "end_line": 28, "end_column": 13 } ]

[]

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[ { "content": " def create(self):\n \"\"\"\n Create a source code repository\n \"\"\"\n import subprocess\n if self.exists():\n return\n if not os.path.exists(self.config['public_path']):\n os.makedirs(self.config['public_path'])\n if not os.path.exists(self.config['private_path']):\n os.makedirs(self.config['private_path'])\n \n cmd = [\"svnadmin\",\"create\", self.path]\n if self.config['config_dir']:\n cmd.extend([\"--config-dir\", self.config['config_dir']])\n subprocess.check_call(cmd)\n \n if self.template:\n template = os.path.join(os.path.dirname(__file__),'repo-templates',\n self.template)\n url = 'file://%s'%self.path\n cmd = ['svn', 'import', template, url, \"-m\", \"\\\"Initial import.\\\"\"]\n if self.config['config_dir']:\n cmd.extend([\"--config-dir\", self.config['config_dir']])\n subprocess.check_call(cmd)", "metadata": "root.SubversionRepository.create", "header": "['class', 'SubversionRepository', '(', 'BaseVCS', ')', ':', '___EOS___']", "index": 124 }, { "content": " def add_remote(self, name, url, branch=None):\n import subprocess\n repo_path = self.path\n cmd = [\"cd %s;git remote add %s %s\" % (repo_path, name, url),]\n try:\n subprocess.check_call(cmd, shell=True)\n except:\n pass", "metadata": "root.GitRepository.add_remote", "header": "['class', 'GitRepository', '(', 'BaseVCS', ')', ':', '___EOS___']", "index": 206 }, { "content": " def remove_remote(self, name):\n import subprocess\n repo_path = self.path\n cmd = [\"cd %s;git remote rm %s\" % (repo_path, name),]\n try:\n subprocess.check_call(cmd, shell=True)\n except:\n pass", "metadata": "root.GitRepository.remove_remote", "header": "['class', 'GitRepository', '(', 'BaseVCS', ')', ':', '___EOS___']", "index": 215 }, { "content": " def update_remote(self, name, branch=None):\n import subprocess\n repo_path = self.path\n the_branch = branch or \"master\"\n cmd = [\"cd %s;git push %s %s\" % (repo_path, name, branch)]\n try:\n subproc = subprocess.Popen(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE)\n output = subproc.communicate()\n except:\n pass", "metadata": "root.GitRepository.update_remote", "header": "['class', 'GitRepository', '(', 'BaseVCS', ')', ':', '___EOS___']", "index": 224 }, { "content": " def create(self):\n import subprocess\n if self.exists():\n return\n if not os.path.exists(self.config['public_path']):\n os.makedirs(self.config['public_path'])\n if not os.path.exists(self.config['private_path']):\n os.makedirs(self.config['private_path'])\n repo_path = self.path\n os.mkdir(repo_path, 0744)\n cmd = [\"cd %s;git --bare init;git --bare update-server-info\" % repo_path,]\n subprocess.check_call(cmd, shell=True)\n cmd = ['%s file://%s/' % (os.path.join(settings.BIN_PATH, 'initialize_git_repo.sh'), repo_path)]\n subprocess.check_call(cmd, shell=True)", "metadata": "root.GitRepository.create", "header": "['class', 'GitRepository', '(', 'BaseVCS', ')', ':', '___EOS___']", "index": 235 } ]

[ { "span": "import subprocess", "start_line": 128, "start_column": 8, "end_line": 128, "end_column": 25 }, { "span": "import subprocess", "start_line": 207, "start_column": 8, "end_line": 207, "end_column": 25 }, { "span": "import subprocess", "start_line": 216, "start_column": 8, "end_line": 216, "end_column": 25 }, { "span": "import subprocess", "start_line": 225, "start_column": 8, "end_line": 225, "end_column": 25 }, { "span": "import subprocess", "start_line": 236, "start_column": 8, "end_line": 236, "end_column": 25 } ]

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[ { "content": "import unittest\nimport os\nfrom JustReleaseNotes.utils import EnvReplacer\nfrom mock import MagicMock\nfrom mock import Mock\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class EnvParser_Test(unittest.TestCase):\n\n\n\n\n\n\n\n\n", "metadata": "root.EnvParser_Test", "header": "['module', '___EOS___']", "index": 6 }, { "content": " def test_listWithNoEnvStaysTheSame(self):\n conf = [1,2,3]\n self.assertEqual(conf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_listWithNoEnvStaysTheSame", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 8 }, { "content": " def test_primitiveWithNoEnvStaysTheSame(self):\n conf = 1\n self.assertEqual(conf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_primitiveWithNoEnvStaysTheSame", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 12 }, { "content": " def test_dictWithNoEnvStaysTheSame(self):\n conf = {\n \"a\" : \"bb\",\n \"b\" : [1, 2, 3, 4.5, \"1231\"],\n \"c\" : {\n \"x\" : \"y\"\n }\n }\n self.assertEqual(conf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_dictWithNoEnvStaysTheSame", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 16 }, { "content": " def test_stringWithNonExistentEnvVariableRaises(self):\n conf = \"ENV[non_existing_env_key]\"\n self.assertRaises(KeyError, EnvReplacer.replace, conf)", "metadata": "root.EnvParser_Test.test_stringWithNonExistentEnvVariableRaises", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 26 }, { "content": " def test_stringWithEmptyEnvKeyStaysTheSame(self):\n conf = \"ENV[]\"\n self.assertEqual(conf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_stringWithEmptyEnvKeyStaysTheSame", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 30 }, { "content": " def test_stringWithInvalidEnvKeyStaysTheSame(self):\n conf = \"ENV[ ]\"\n self.assertEqual(conf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_stringWithInvalidEnvKeyStaysTheSame", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 34 }, { "content": " def test_stringWithMixedCaseEnvIsReplaced(self):\n os.environ[\"a\"] = \"1\"\n os.environ[\"b\"] = \"2\"\n os.environ[\"c\"] = \"3\"\n conf = \"env[a] Env[b] ENV[c]\"\n self.assertEqual(\"1 2 3\", EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_stringWithMixedCaseEnvIsReplaced", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 38 }, { "content": " def test_dictWithEnvParsedCorrectly(self):\n os.environ['abc'] = 'xyz'\n os.environ['ab_12'] = \"xy99\"\n os.environ['AbAb'] = \"ZZZ\"\n conf = {\n \"a\" : \"bb\",\n \"b\" : [1, 2, 3, 4.5, \"ENV[abc]\"],\n \"c\" : {\n \"x\" : \"env[ab_12]\",\n \"d\" : \"Env[AbAb] x eNV[AbAb]\"\n }\n }\n expectedConf = {\n \"a\" : \"bb\",\n \"b\" : [1, 2, 3, 4.5, \"xyz\"],\n \"c\" : {\n \"x\" : \"xy99\",\n \"d\" : \"ZZZ x ZZZ\"\n }\n }\n self.assertEqual(expectedConf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_dictWithEnvParsedCorrectly", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 45 }, { "content": " def test_dictWithUnicodeEnvRaplacedCorrectly(self):\n os.environ['abc'] = 'xyz'\n os.environ['ab_12'] = \"xy99\"\n os.environ['AbAb'] = \"ZZZ\"\n conf = {\n u\"a\" : \"ENV[abc]\",\n \"c\" : {\n u\"x\" : \"env[ab_12]\",\n u\"d\" : \"Env[AbAb] x eNV[AbAb]\"\n }\n }\n expectedConf = {\n u\"a\" : \"xyz\",\n \"c\" : {\n u\"x\" : \"xy99\",\n u\"d\" : \"ZZZ x ZZZ\"\n }\n }\n self.assertEqual(expectedConf, EnvReplacer.replace(conf))", "metadata": "root.EnvParser_Test.test_dictWithUnicodeEnvRaplacedCorrectly", "header": "['class', 'EnvParser_Test', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 67 } ]

[ { "span": "from mock import MagicMock", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 26 }, { "span": "from mock import Mock", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 21 } ]

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[ { "content": " def testIfExp(self):\n var = 1 if True else 0\n self.assertEqual(var, 1)\n var = 1 if False else 0\n self.assertEqual(var, 0)\n var = 1 if [] else 0\n self.assertEqual(var, 0)\n var = 1 if not [] else 0\n self.assertEqual(var, 1)", "metadata": "root.BuiltinTest.testIfExp", "header": "['class', 'BuiltinTest', '(', 'UnitTest', ')', ':', '___EOS___']", "index": 370 } ]

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[ { "content": "def test_combine_python():\n\n # This will result in NonTerminal node\n def root(): return my_rule(), \".\"\n # This will result in Terminal node\n def my_rule(): return Combine(ZeroOrMore(\"a\"), OneOrMore(\"b\"))\n\n parser = ParserPython(root)\n\n input1 = \"abbb.\"\n\n # Whitespaces are preserved in lexical rules so the following input\n # should not be recognized.\n input2 = \"a b bb.\"\n\n ptree1 = parser.parse(input1)\n\n with pytest.raises(NoMatch):\n ptree2 = parser.parse(input2)\n\n assert isinstance(ptree1, NonTerminal)\n assert isinstance(ptree1[0], Terminal)\n assert ptree1[0].value == \"abbb\"", "metadata": "root.test_combine_python", "header": "['module', '___EOS___']", "index": 17 } ]

[ { "span": "ptree2 ", "start_line": 35, "start_column": 8, "end_line": 35, "end_column": 14 } ]

[]

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[ { "content": " def func(self, multiOutput):\n N = 5\n D = 10\n D2 = 5\n Time = 5\n I = RecurrentAdapter(Map(\n name='I',\n inputNames=['input(0)', 'H(-1)', 'C(-1)'],\n outputDim=D2,\n activeFn=SigmoidActiveFn(),\n initRange=0.1,\n initSeed=5,\n biasInitConst=1.0,\n learningRate=0.8,\n momentum=0.9\n ))\n\n F = RecurrentAdapter(Map(\n name='F',\n inputNames=['input(0)', 'H(-1)', 'C(-1)'],\n outputDim=D2,\n activeFn=SigmoidActiveFn(),\n initRange=0.1,\n initSeed=6,\n biasInitConst=1.0,\n learningRate=0.8,\n momentum=0.9\n ))\n\n Z = RecurrentAdapter(Map(\n name='Z',\n inputNames=['input(0)', 'H(-1)'],\n outputDim=D2,\n activeFn=TanhActiveFn(),\n initRange=0.1,\n initSeed=7,\n biasInitConst=0.0,\n learningRate=0.8,\n momentum=0.9\n ))\n\n FC = RecurrentAdapter(ElementProduct(\n name='F.C',\n inputNames=['F(0)', 'C(-1)'],\n outputDim=D2\n ))\n\n IZ = RecurrentAdapter(ElementProduct(\n name='I.Z',\n inputNames=['I(0)', 'Z(0)'],\n outputDim=D2\n ))\n\n C = RecurrentAdapter(Sum(\n name='C',\n inputNames=['F.C(0)', 'I.Z(0)'],\n numComponents=2,\n outputDim=D2\n ))\n\n O = RecurrentAdapter(Map(\n name='O',\n inputNames=['input(0)', 'H(-1)', 'C(0)'],\n outputDim=D2,\n activeFn=SigmoidActiveFn(),\n initRange=0.1,\n initSeed=8,\n biasInitConst=1.0,\n learningRate=0.8,\n momentum=0.9\n ))\n\n U = RecurrentAdapter(Active(\n name='U',\n inputNames=['C(0)'],\n outputDim=D2,\n activeFn=TanhActiveFn()\n ))\n\n H = RecurrentAdapter(ElementProduct(\n name='H',\n inputNames=['O(0)', 'U(0)'],\n outputDim=D2\n ))\n\n lstm = RecurrentContainer(\n name='lstm',\n stages=[I, F, Z, FC, IZ, C, O, U, H],\n timespan=Time,\n inputDim=D,\n outputDim=D2,\n outputStageNames=['H'],\n multiOutput=multiOutput,\n outputdEdX=True)\n\n lstm2 = LSTM_Old(\n name='lstm2',\n inputDim=D,\n outputDim=D2,\n needInit=False,\n initRange=0.1,\n initSeed=0,\n cutOffZeroEnd=True,\n multiErr=multiOutput,\n learningRate=0.8,\n momentum=0.9\n )\n\n random = np.random.RandomState(1)\n costFn = crossEntOne\n for i in range(3):\n X = random.rand(N, Time, D) * 0.1\n if multiOutput:\n T = random.rand(N, Time, D2) * 0.1\n else:\n T = random.rand(N, D2) * 0.1\n\n Y = lstm.forward(X)\n E, dEdY = costFn(Y, T)\n dEdX = lstm.backward(dEdY)\n if i == 0:\n if I.stages[0].gpu: \n W = np.concatenate((\n gpu.as_numpy_array(I.getWeights()),\n gpu.as_numpy_array(F.getWeights()),\n gpu.as_numpy_array(Z.getWeights()),\n gpu.as_numpy_array(O.getWeights())), axis=0)\n else:\n W = np.concatenate((I.getWeights(), \n F.getWeights(), Z.getWeights(), \n O.getWeights()), axis=0)\n lstm2.W = W.transpose()\n if multiOutput:\n Y2 = lstm2.forward(X)[:,:-1]\n else:\n Y2 = lstm2.forward(X)\n\n E, dEdY2 = costFn(Y2, T)\n if multiOutput:\n dEdX2 = lstm2.backward(np.concatenate((dEdY2, np.zeros((N, 1, D2))), axis=1))\n else:\n dEdX2 = lstm2.backward(dEdY2)\n\n if I.stages[0].gpu:\n dEdW = np.concatenate((\n gpu.as_numpy_array(I.getGradient()),\n gpu.as_numpy_array(F.getGradient()),\n gpu.as_numpy_array(Z.getGradient()),\n gpu.as_numpy_array(O.getGradient())), axis=0)\n else:\n dEdW = np.concatenate((I.getGradient(),\n F.getGradient(),\n Z.getGradient(),\n O.getGradient()), axis=0)\n dEdW2 = lstm2.dEdW\n lstm.updateWeights()\n lstm2.updateWeights()\n #self.chkEqual(Y, Y2)\n\n #self.chkEqual(dEdX, dEdX2)\n self.chkEqual(dEdW.transpose(), dEdW2)\n if I.stages[0].gpu: \n W = np.concatenate((\n gpu.as_numpy_array(I.getWeights()),\n gpu.as_numpy_array(F.getWeights()),\n gpu.as_numpy_array(Z.getWeights()),\n gpu.as_numpy_array(O.getWeights())), axis=0)\n else:\n W = np.concatenate((I.getWeights(), \n F.getWeights(), Z.getWeights(), \n O.getWeights()), axis=0)\n W2 = lstm2.W\n #self.chkEqual(W.transpose(), W2)", "metadata": "root.LSTM_Recurrent_Random_Tests.func", "header": "['class', 'LSTM_Recurrent_Random_Tests', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 73 } ]

[ { "span": "dEdX2 ", "start_line": 212, "start_column": 16, "end_line": 212, "end_column": 21 }, { "span": "dEdX2 ", "start_line": 214, "start_column": 16, "end_line": 214, "end_column": 21 }, { "span": "W ", "start_line": 235, "start_column": 16, "end_line": 235, "end_column": 17 }, { "span": "W ", "start_line": 241, "start_column": 16, "end_line": 241, "end_column": 17 } ]

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[ { "content": " def get_success_url(self):\n if self.request.META.get(\"HTTP_REFERER\") != \\\n self.request.build_absolute_uri():\n return self.request.META.get('HTTP_REFERER')\n\n try:\n success_url = self.object.parent.get_absolute_url()\n except:\n pass\n else:\n return success_url\n\n return super(WidgetActionMixin, self).get_success_url()", "metadata": "root.SuccessUrlMixin.get_success_url", "header": "['class', 'SuccessUrlMixin', '(', 'object', ')', ':', '___EOS___']", "index": 211 }, { "content": " def post(self, *args, **kwargs):\n\n widgets = self.request.POST.getlist('widgets[]', [])\n\n widget_list = []\n\n try:\n for widget_id in widgets:\n widget = get_widget_from_id(widget_id)\n if widget:\n widget_list.append(widget)\n except:\n messages.error(\n self.request, _('Error occured while sorting widgets.'))\n\n i = 0\n\n for widget in widget_list:\n widget.ordering = i\n widget.save()\n i += 1\n\n messages.success(self.request, _('Widget sorting success.'))\n\n return HttpResponse('ok')", "metadata": "root.WidgetSortView.post", "header": "['class', 'WidgetSortView', '(', 'WidgetActionMixin', ',', 'ModalFormView', ')', ':', '___EOS___']", "index": 288 } ]

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[ { "content": "# -*- coding: utf-8 -*-\n\nfrom django.core.management.base import BaseCommand, CommandError\nfrom django.conf import settings\nfrom optparse import make_option\n\nimport logging\nimport zmq\nimport sys\nimport os\n\nlog = logging.getLogger('greenqueue')\n\nfrom greenqueue import settings as gq_settings\nfrom greenqueue.shortcuts import load_backend_class\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class Command(BaseCommand):\n option_list = BaseCommand.option_list + (\n make_option('--socket', action=\"store\", dest=\"socket\", default=gq_settings.GREENQUEUE_BIND_ADDRESS,\n help=\"Tells greenqueue server to use this zmq push socket path instead a default.\"),\n )\n\n help = \"Starts a greenqueue worker.\"\n args = \"[]\"\n", "metadata": "root.Command", "header": "['module', '___EOS___']", "index": 16 }, { "content": " def handle(self, *args, **options):\n gq_settings.GREENQUEUE_BIND_ADDRESS = options['socket']\n \n service_handler = load_backend_class().instance()\n verbosity = int(options.get('verbosity'))\n\n if verbosity > 1:\n log.setLevel(logging.DEBUG)\n else:\n log.setLevel(logging.INFO)\n \n try:\n service_handler.start()\n except KeyboardInterrupt:\n pass", "metadata": "root.Command.handle", "header": "['class', 'Command', '(', 'BaseCommand', ')', ':', '___EOS___']", "index": 25 } ]

[ { "span": "from django.core.management.base import BaseCommand, CommandError", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 65 }, { "span": "from django.conf import settings", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 32 }, { "span": "import zmq", "start_line": 7, "start_column": 0, "end_line": 7, "end_column": 10 }, { "span": "import sys", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 10 }, { "span": "import os", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 9 } ]

[]

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[ { "content": "#!/usr/bin/env python\n# -*- coding: utf_8 -*-\n\nimport sys\nimport os\nimport unittest\nimport re\nimport web\n\nfrom paste.fixture import TestApp\n#from nose.tools import *\n\nimport logging\nimport karesansui\nimport karesansui.urls\n\nusername = \"ja@localhost\"\npassword = \"password\"\n\n\n\n\n \nif __name__ == '__main__':\n main()\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class TestRestAPI(unittest.TestCase):\n\n\n\n \n\n\n\n\n\n", "metadata": "root.TestRestAPI", "header": "['module', '___EOS___']", "index": 19 }, { "content": " def setUp(self):\n middleware = []\n self.logger = logging.getLogger('restapi')\n urls = karesansui.urls.urls\n app = web.application(urls, globals(), autoreload=False)\n\n from karesansui.app import load_sqlalchemy_karesansui,load_sqlalchemy_pysilhouette\n app.add_processor(load_sqlalchemy_karesansui)\n app.add_processor(load_sqlalchemy_pysilhouette)\n\n self.prefix = \"\"\n if karesansui.config['application.url.prefix']:\n mapping = (karesansui.config['application.url.prefix'], app)\n app = web.subdir_application(mapping)\n self.prefix = karesansui.config['application.url.prefix']\n\n self.app = TestApp(app.wsgifunc(*middleware))\n\n self.headers = {}\n if username != None and password != None:\n from base64 import b64encode\n base64string =b64encode(\"%s:%s\" % (username, password))\n self.headers = {\"Authorization\": \"Basic %s\" % base64string}\n\n return True", "metadata": "root.TestRestAPI.setUp", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 21 }, { "content": " def tearDown(self):\n return True", "metadata": "root.TestRestAPI.tearDown", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 47 }, { "content": " def test_dummy(self):\n self.assertEqual(True,True)", "metadata": "root.TestRestAPI.test_dummy", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 50 }, { "content": " def test_get_index(self):\n r = self.app.get(\"%s/\" % self.prefix,headers=self.headers)\n assert_equal(r.status, 200)\n r.mustcontain('Now Loading')", "metadata": "root.TestRestAPI.test_get_index", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 53 }, { "content": " def test_get_host_1_index(self):\n r = self.app.get(\"%s/host/1/\" % self.prefix,headers=self.headers)\n assert_equal(r.status, 200)\n r.mustcontain('Now Loading')", "metadata": "root.TestRestAPI.test_get_host_1_index", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 58 }, { "content": " def test_get_host_1_json(self):\n r = self.app.get(\"%s/host/1.json\" % self.prefix,headers=self.headers)\n assert_equal(r.status, 200)\n r.mustcontain('other_url')", "metadata": "root.TestRestAPI.test_get_host_1_json", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 63 }, { "content": " def test_get_host_1_guest_2_index(self):\n r = self.app.get(\"%s/host/1/guest/2/\" % self.prefix,headers=self.headers)\n assert_equal(r.status, 200)\n r.mustcontain('Now Loading')", "metadata": "root.TestRestAPI.test_get_host_1_guest_2_index", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 68 }, { "content": " def test_get_host_1_guest_2_json(self):\n r = self.app.get(\"%s/host/1/guest/2.json\" % self.prefix,headers=self.headers)\n assert_equal(r.status, 200)\n r.mustcontain('other_url')", "metadata": "root.TestRestAPI.test_get_host_1_guest_2_json", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 73 }, { "content": " def test_post_host_1_guest(self):\n\n params = {}\n params['domain_name'] = 'foobar'\n params['m_name'] = 'foobar'\n params['icon_filename'] = ''\n params['m_hypervisor'] = '1'\n params['note_title'] = 'title'\n params['note_value'] = 'value'\n params['tags'] = ''\n params['nic_type'] = 'phydev'\n params['phydev'] = 'xenbr0'\n params['virnet'] = 'default'\n params['xen_disk_size'] = '4096'\n params['xen_extra'] = ''\n params['xen_initrd'] = '/var/ftp/images/xen/initrd.img'\n params['xen_kernel'] = '/var/ftp/images/xen/vmlinuz'\n params['xen_mac'] = '00:16:3e:4e:4d:e2'\n params['xen_mem_size'] = '256'\n params['xen_graphics_port'] = '5910'\n upload_files=None\n\n r = self.app.post(\"%s/host/1/guest.part\" % self.prefix,params=params,headers=self.headers,upload_files=upload_files)\n assert_equal(r.status, 200)\n r.mustcontain('other_url')", "metadata": "root.TestRestAPI.test_post_host_1_guest", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 78 }, { "content": " def test_del_host_1_guest_2(self):\n r = self.app.delete(\"%s/host/1/guest/2\" % self.prefix,headers=self.headers)\n assert_equal(r.status, 200)\n r.mustcontain('other_url')", "metadata": "root.TestRestAPI.test_del_host_1_guest_2", "header": "['class', 'TestRestAPI', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 104 }, { "content": "class SuiteRestAPI(unittest.TestSuite):", "metadata": "root.SuiteRestAPI", "header": "['module', '___EOS___']", "index": 109 }, { "content": " def __init__(self):\n tests = ['test_dummy',\n 'test_get_index',\n 'test_get_host_1_index',\n 'test_get_host_1_json',\n 'test_get_host_1_guest_2_index',\n 'test_get_host_1_guest_2_json',\n 'test_post_host_1_guest',\n ]\n unittest.TestSuite.__init__(self,map(TestRestAPI, tests))", "metadata": "root.SuiteRestAPI.__init__", "header": "['class', 'SuiteRestAPI', '(', 'unittest', '.', 'TestSuite', ')', ':', '___EOS___']", "index": 110 }, { "content": "def all_suite_restapi():\n return unittest.TestSuite([SuiteRestAPI()])", "metadata": "root.all_suite_restapi", "header": "['module', '___EOS___']", "index": 121 }, { "content": "def main():\n unittest.TextTestRunner(verbosity=2).run(all_suite_restapi())", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 124 } ]

[ { "span": "import sys", "start_line": 3, "start_column": 0, "end_line": 3, "end_column": 10 }, { "span": "import os", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 9 }, { "span": "import re", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 9 } ]

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[ { "content": "import os\nimport sys\nfrom setuptools import setup, Extension, find_packages\n\n\next_modules = []\n# C speedups are no good for PyPy\nif '__pypy__' not in sys.builtin_module_names:\n ext_modules.append(\n Extension('gevent_fastcgi.speedups', ['gevent_fastcgi/speedups.c']))\n\nsetup(\n name='gevent-fastcgi',\n version='1.0.2.1',\n description='''FastCGI/WSGI client and server implemented using gevent\n library''',\n long_description='''\n FastCGI/WSGI server implementation using gevent library. No need to\n monkeypatch and slow down your favourite FastCGI server in order to make\n it \"green\".\n\n Supports connection multiplexing. Out-of-the-box support for Django and\n frameworks that use PasteDeploy including Pylons and Pyramid.\n ''',\n keywords='fastcgi gevent wsgi',\n author='Alexander Kulakov',\n author_email='a.kulakov@mail.ru',\n url='http://github.com/momyc/gevent-fastcgi',\n packages=find_packages(exclude=('gevent_fastcgi.tests.*',)),\n zip_safe=True,\n license='MIT',\n install_requires=[\n \"zope.interface\",\n \"gevent>=0.13.6\",\n ],\n entry_points={\n 'paste.server_runner': [\n 'fastcgi = gevent_fastcgi.adapters.paste_deploy:fastcgi_server_runner',\n 'wsgi = gevent_fastcgi.adapters.paste_deploy:wsgi_server_runner',\n 'wsgiref = gevent_fastcgi.adapters.paste_deploy:wsgiref_server_runner',\n ],\n },\n test_suite=\"tests\",\n tests_require=['mock'],\n ext_modules=ext_modules\n)\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 } ]

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[ { "content": " def test_enhanced_subnet_options(self):\n self.driver.enable_metadata_opt = False\n l3p = self.create_l3_policy(name='myl3',\n ip_pool='192.168.0.0/16')['l3_policy']\n l2p = self.create_l2_policy(name='myl2',\n l3_policy_id=l3p['id'])['l2_policy']\n ptg = self.create_policy_target_group(\n name=\"ptg1\", l2_policy_id=l2p['id'])['policy_target_group']\n pt1 = self.create_policy_target(\n policy_target_group_id=ptg['id'])['policy_target']\n self._bind_port_to_host(pt1['port_id'], 'h1')\n sub = self._get_object('subnets', ptg['subnets'][0],\n self.api)\n with self.port(subnet=sub, device_owner='network:dhcp',\n tenant_id='onetenant') as dhcp:\n dhcp = dhcp['port']\n details = self.driver.get_gbp_details(\n context.get_admin_context(),\n device='tap%s' % pt1['port_id'], host='h1')\n\n self.assertEqual(1, len(details['subnets']))\n # Verify that DNS nameservers are correctly set\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dns_nameservers'])\n # Verify Default route via GW\n self.assertTrue({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])\n\n # Verify Metadata route via DHCP\n self.assertTrue(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])\n\n # Verify no extra routes are leaking inside\n self.assertEqual(2, len(details['subnets'][0]['host_routes']))\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dhcp_server_ips'])", "metadata": "root.TestPolicyTarget.test_enhanced_subnet_options", "header": "['class', 'TestPolicyTarget', '(', 'ApicMappingTestCase', ')', ':', '___EOS___']", "index": 493 }, { "content": " def test_update_l2p_inject_default_route_false(self):\n self.driver.enable_metadata_opt = False\n l3p = self.create_l3_policy(name='myl3',\n ip_pool='192.168.0.0/16')['l3_policy']\n l2p = self.create_l2_policy(name='myl2',\n l3_policy_id=l3p['id'])['l2_policy']\n ptg = self.create_policy_target_group(\n name=\"ptg1\", l2_policy_id=l2p['id'])['policy_target_group']\n pt1 = self.create_policy_target(\n policy_target_group_id=ptg['id'])['policy_target']\n self._bind_port_to_host(pt1['port_id'], 'h1')\n sub = self._get_object('subnets', ptg['subnets'][0],\n self.api)\n\n # Add one more host_route to the subnet\n more_host_routes = [{'destination': '172.16.0.0/24',\n 'nexthop': '10.0.2.2'}]\n data = {'subnet': {'host_routes': more_host_routes}}\n req = self.new_update_request('subnets', data, sub['subnet']['id'])\n res = self.deserialize(self.fmt, req.get_response(self.api))\n self.assertEqual(sorted(res['subnet']['host_routes']),\n sorted(more_host_routes))\n\n with self.port(subnet=sub, device_owner='network:dhcp',\n tenant_id='onetenant') as dhcp:\n dhcp = dhcp['port']\n details = self.driver.get_gbp_details(\n context.get_admin_context(),\n device='tap%s' % pt1['port_id'], host='h1')\n\n self.assertEqual(1, len(details['subnets']))\n # Verify that DNS nameservers are correctly set\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dns_nameservers'])\n # Verify Default route via GW\n self.assertTrue({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])\n\n # Verify Metadata route via DHCP\n self.assertTrue(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])\n\n # Verify additional host_routes are also added:\n # GW + Metadata + 1 additional route = 3\n self.assertEqual(3, len(details['subnets'][0]['host_routes']))\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dhcp_server_ips'])\n\n # Verify gateway_ip is set\n self.assertTrue('gateway_ip' in details['subnets'][0])\n\n data = {'l2_policy': {'inject_default_route': False}}\n res = self.new_update_request('l2_policies', data, l2p['id'],\n self.fmt).get_response(self.ext_api)\n pt2 = self.create_policy_target(\n policy_target_group_id=ptg['id'])['policy_target']\n self._bind_port_to_host(pt2['port_id'], 'h1')\n with self.port(subnet=sub, tenant_id='onetenant'):\n details = self.driver.get_gbp_details(\n context.get_admin_context(),\n device='tap%s' % pt2['port_id'], host='h1')\n\n self.assertEqual(1, len(details['subnets']))\n # Verify Default route via GW is not present\n self.assertFalse({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])\n\n # Verify Metadata route via DHCP is not present\n self.assertFalse(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])\n\n # Verify only extra route is present\n self.assertEqual(1, len(details['subnets'][0]['host_routes']))\n self.assertTrue(\n {'destination': '172.16.0.0/24',\n 'nexthop': '10.0.2.2'} in\n details['subnets'][0]['host_routes'])\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dhcp_server_ips'])\n # Verify gateway_ip is not set\n self.assertFalse('gateway_ip' in details['subnets'][0])", "metadata": "root.TestPolicyTarget.test_update_l2p_inject_default_route_false", "header": "['class', 'TestPolicyTarget', '(', 'ApicMappingTestCase', ')', ':', '___EOS___']", "index": 533 }, { "content": " def test_create_l2p_inject_default_route_false(self):\n self.driver.enable_metadata_opt = False\n l3p = self.create_l3_policy(name='myl3',\n ip_pool='192.168.0.0/16')['l3_policy']\n l2p = self.create_l2_policy(name='myl2',\n l3_policy_id=l3p['id'],\n inject_default_route=False)['l2_policy']\n ptg = self.create_policy_target_group(\n name=\"ptg1\", l2_policy_id=l2p['id'])['policy_target_group']\n pt1 = self.create_policy_target(\n policy_target_group_id=ptg['id'])['policy_target']\n self._bind_port_to_host(pt1['port_id'], 'h1')\n sub = self._get_object('subnets', ptg['subnets'][0],\n self.api)\n\n # Add one more host_route to the subnet\n more_host_routes = [{'destination': '172.16.0.0/24',\n 'nexthop': '10.0.2.2'}]\n data = {'subnet': {'host_routes': more_host_routes}}\n req = self.new_update_request('subnets', data, sub['subnet']['id'])\n res = self.deserialize(self.fmt, req.get_response(self.api))\n self.assertEqual(sorted(res['subnet']['host_routes']),\n sorted(more_host_routes))\n\n with self.port(subnet=sub, device_owner='network:dhcp',\n tenant_id='onetenant') as dhcp:\n dhcp = dhcp['port']\n details = self.driver.get_gbp_details(\n context.get_admin_context(),\n device='tap%s' % pt1['port_id'], host='h1')\n\n self.assertEqual(1, len(details['subnets']))\n # Verify that DNS nameservers are correctly set\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dns_nameservers'])\n # Verify Default route via GW is not present\n self.assertFalse({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])\n\n # Verify Metadata route via DHCP is not present\n self.assertFalse(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])\n\n # Verify only extra route is present\n self.assertEqual(1, len(details['subnets'][0]['host_routes']))\n self.assertTrue(\n {'destination': '172.16.0.0/24',\n 'nexthop': '10.0.2.2'} in\n details['subnets'][0]['host_routes'])\n self.assertEqual([dhcp['fixed_ips'][0]['ip_address']],\n details['subnets'][0]['dhcp_server_ips'])\n # Verify gateway_ip is not set\n self.assertFalse('gateway_ip' in details['subnets'][0])", "metadata": "root.TestPolicyTarget.test_create_l2p_inject_default_route_false", "header": "['class', 'TestPolicyTarget', '(', 'ApicMappingTestCase', ')', ':', '___EOS___']", "index": 621 }, { "content": " def test_icmp_rule_created_on_apic(self):\n pr = self._create_simple_policy_rule('in', 'icmp', None)\n tenant = pr['tenant_id']\n\n mgr = self.driver.apic_manager\n expected_calls = [\n mock.call(pr['id'], owner=tenant, entry='os-entry-0', etherT='ip',\n prot='icmp', transaction=mock.ANY),\n mock.call(amap.REVERSE_PREFIX + pr['id'], owner=tenant,\n entry=mock.ANY, etherT='ip', icmpv4T='echo-rep',\n prot='icmp', transaction=mock.ANY),\n mock.call(amap.REVERSE_PREFIX + pr['id'], owner=tenant,\n entry=mock.ANY, etherT='ip', icmpv4T='dst-unreach',\n prot='icmp', transaction=mock.ANY),\n mock.call(amap.REVERSE_PREFIX + pr['id'], owner=tenant,\n entry=mock.ANY, etherT='ip', icmpv4T='src-quench',\n prot='icmp', transaction=mock.ANY),\n mock.call(amap.REVERSE_PREFIX + pr['id'], owner=tenant,\n entry=mock.ANY, etherT='ip', icmpv4T='time-exceeded',\n prot='icmp', transaction=mock.ANY)]\n # verify that entry is always different\n found = set()\n for call in mgr.create_tenant_filter.call_args_list:\n # Only for reverse filters\n if call[0][0].startswith(amap.REVERSE_PREFIX):\n self.assertFalse(call[1]['entry'] in found)\n found.add(call[1]['entry'])\n\n self._check_call_list(\n expected_calls, mgr.create_tenant_filter.call_args_list)", "metadata": "root.TestPolicyRule.test_icmp_rule_created_on_apic", "header": "['class', 'TestPolicyRule', '(', 'ApicMappingTestCase', ')', ':', '___EOS___']", "index": 2679 }, { "content": " def _test_create_fip(self, shared):\n self._mock_external_dict([('supported', '192.168.0.2/24')])\n es = self.create_external_segment(name='supported',\n expected_res_status=webob.exc.HTTPCreated.code,\n shared=shared)['external_segment']\n self.create_nat_pool(external_segment_id=es['id'],\n ip_version=4, ip_pool='192.168.1.0/24', shared=shared,\n expected_res_status=webob.exc.HTTPCreated.code)\n subnet = self._get_object('subnets', es['subnet_id'],\n self.api)['subnet']\n\n fip_dict = {'floating_network_id': subnet['network_id']}\n fip_id = self.driver.create_floatingip_in_nat_pool(\n context.get_admin_context(),\n es['tenant_id'], {'floatingip': fip_dict})\n self.assertIsNotNone(fip_id)\n fip = self._get_object(\n 'floatingips', fip_id, self.ext_api)['floatingip']\n self.assertTrue(\n netaddr.IPAddress(fip['floating_ip_address']) in\n netaddr.IPNetwork('192.168.1.0/24'))", "metadata": "root.TestNatPool._test_create_fip", "header": "['class', 'TestNatPool', '(', 'ApicMappingTestCase', ')', ':', '___EOS___']", "index": 4135 } ]

[ { "span": "self.assertTrue({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])", "start_line": 518, "start_column": 12, "end_line": 520, "end_column": 65 }, { "span": "self.assertTrue(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])", "start_line": 523, "start_column": 12, "end_line": 526, "end_column": 53 }, { "span": "self.assertTrue({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])", "start_line": 568, "start_column": 12, "end_line": 570, "end_column": 65 }, { "span": "self.assertTrue(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])", "start_line": 573, "start_column": 12, "end_line": 576, "end_column": 53 }, { "span": "self.assertTrue('gateway_ip' in details['subnets'][0])", "start_line": 585, "start_column": 12, "end_line": 585, "end_column": 66 }, { "span": "self.assertFalse({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])", "start_line": 600, "start_column": 12, "end_line": 602, "end_column": 65 }, { "span": "self.assertFalse(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])", "start_line": 605, "start_column": 12, "end_line": 608, "end_column": 53 }, { "span": "self.assertTrue(\n {'destination': '172.16.0.0/24',\n 'nexthop': '10.0.2.2'} in\n details['subnets'][0]['host_routes'])", "start_line": 612, "start_column": 12, "end_line": 615, "end_column": 53 }, { "span": "self.assertFalse('gateway_ip' in details['subnets'][0])", "start_line": 619, "start_column": 12, "end_line": 619, "end_column": 67 }, { "span": "self.assertFalse({'destination': '0.0.0.0/0',\n 'nexthop': '192.168.0.1'} in\n details['subnets'][0]['host_routes'])", "start_line": 657, "start_column": 12, "end_line": 659, "end_column": 65 }, { "span": "self.assertFalse(\n {'destination': '169.254.169.254/16',\n 'nexthop': dhcp['fixed_ips'][0]['ip_address']} in\n details['subnets'][0]['host_routes'])", "start_line": 662, "start_column": 12, "end_line": 665, "end_column": 53 }, { "span": "self.assertTrue(\n {'destination': '172.16.0.0/24',\n 'nexthop': '10.0.2.2'} in\n details['subnets'][0]['host_routes'])", "start_line": 669, "start_column": 12, "end_line": 672, "end_column": 53 }, { "span": "self.assertFalse('gateway_ip' in details['subnets'][0])", "start_line": 676, "start_column": 12, "end_line": 676, "end_column": 67 }, { "span": "self.assertFalse(call[1]['entry'] in found)", "start_line": 2704, "start_column": 16, "end_line": 2704, "end_column": 59 }, { "span": "self.assertTrue(\n netaddr.IPAddress(fip['floating_ip_address']) in\n netaddr.IPNetwork('192.168.1.0/24'))", "start_line": 4153, "start_column": 8, "end_line": 4155, "end_column": 48 } ]

[]

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[ { "content": "@csrf_exempt\ndef user_system_quicksearch_ajax(request):\n \"\"\"Returns systems sort table\"\"\"\n search = request.POST['quicksearch']\n filters = [\n Q(**{\"%s__icontains\" % t: search})\n for t in models.UnmanagedSystem.search_fields\n ]\n\n systems = models.UnmanagedSystem.objects.filter(\n reduce(operator.or_, filters)\n )\n\n # For some reason systems are referencing server model classes that do not\n # exist. I have no idea how this happened but it did. If accessing the\n # server model causes and error set the server_model to None so we don't\n # get an exception later during page loads.\n # TOOD: Clean up defunt server model references\n for s in systems:\n try:\n s.server_model\n except:\n s.server_model = None\n\n return render_to_response(\n 'user_systems/quicksearch.html',\n {'systems': systems, 'BUG_URL': BUG_URL},\n RequestContext(request)\n )", "metadata": "root.user_system_quicksearch_ajax", "header": "['module', '___EOS___']", "index": 166 }, { "content": "def get_changed_by(request):\n try:\n remote_user = request.META['REMOTE_USER']\n except:\n remote_user = None\n\n return remote_user", "metadata": "root.get_changed_by", "header": "['module', '___EOS___']", "index": 329 }, { "content": "def user_system_csv(request):\n systems = models.UnmanagedSystem.objects.all().order_by('owner__name')\n try:\n ref_split = request.META['HTTP_REFERER'].split('/')\n type, id = ref_split[-3:-1]\n if type == 'model':\n systems = systems.filter(server_model__id=id)\n except:\n pass\n\n\n response = HttpResponse(mimetype='text/csv')\n response['Content-Disposition'] = 'attachment; filename=user_systems.csv'\n\n writer = csv.writer(response)\n writer.writerow(['Owner', 'Location', 'Serial', 'Asset Tag',\n 'Operating System', 'Model', 'Date Purchased', 'Cost'])\n\n for s in systems:\n try:\n location = s.owner.user_location\n except AttributeError:\n location = ''\n writer.writerow([s.owner, location, s.serial, s.asset_tag,\n s.operating_system, s.server_model, s.date_purchased, s.cost])\n\n return response", "metadata": "root.user_system_csv", "header": "['module', '___EOS___']", "index": 498 } ]

[ { "span": "except:", "start_line": 187, "start_column": 8, "end_line": 187, "end_column": 15 }, { "span": "except:", "start_line": 332, "start_column": 4, "end_line": 332, "end_column": 11 }, { "span": "except:", "start_line": 505, "start_column": 4, "end_line": 505, "end_column": 11 } ]

[]

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"html", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "{_", "'", "system", "s", "'_", ":_", "systems_", ",_", "'", "BUG", "\\u", "URL", "'_", ":_", "BUG", "\\u", "URL_", "}_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "Request", "Context_", "(_", "request_", ")_", "\\u\\u\\uNL\\u\\u\\u_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "[SEP]_", "module_", "\\u\\u\\uEOS\\u\\u\\u_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "def_", "get", "\\u", "change", "d\\u", "by_", "(_", "request_", ")_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "remote", "\\u", "user_", "=_", "request_", "._", "META_", "[_", "'", "REMO", "TE", "\\u", "USER", "'_", "]_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "remote", "\\u", "user_", "=_", "None_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", 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"\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "systems_", "=_", "systems_", "._", "filter_", "(_", "server", "\\u", "model", "\\u\\u", "id_", "=_", "id_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "pass_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "response_", "=_", "Http", "Response_", "(_", "mimetype_", "=_", "'", "text", "/", "csv", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "response_", "[_", "'", "Conten", "t", "-", "Dispo", "sition", "'_", "]_", "=_", "'", "attach", "ment", ";", " ", "filename", "=", "user", "\\u", "system", "s", ".", "csv", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "writer_", "=_", "csv_", "._", "writer_", "(_", "response_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "writer_", "._", "writerow_", "(_", "[_", "'", "Owne", "r", "'_", ",_", "'", "Locat", "ion", "'_", ",_", "'", "Ser", "ial", "'_", ",_", "'", "Asset", " ", "Ta", "g", "'_", ",_", "\\u\\u\\uNL\\u\\u\\u_", "'", "Opera", "ting", " ", "System", "'_", ",_", "'", "Model", "'_", ",_", "'", "Date", " ", "Pur", "chase", "d", "'_", ",_", "'", "Cost", "'_", "]_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "for_", "s_", "in_", "systems_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "try_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "location_", "=_", "s_", "._", "owner_", "._", "user", "\\u", "location_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "except_", "Attribute", "Error_", ":_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uINDENT\\u\\u\\u ", " _", "location_", "=_", "''_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uDEDENT\\u\\u\\u_", "writer_", "._", "writerow_", "(_", "[_", "s_", "._", "owner_", ",_", "location_", ",_", "s_", "._", "serial_", ",_", "s_", "._", "asset", 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[ { "content": "import csv\nimport operator\n\nfrom django.template import RequestContext\nfrom django.forms.extras.widgets import SelectDateWidget\nfrom django.db import connection\nfrom django.core.urlresolvers import reverse\nfrom django.db.models import Q\nfrom django.utils import simplejson as json\nfrom django.http import HttpResponse, HttpResponseRedirect\nfrom django.core.mail import send_mail\n\nimport forms\nimport models\nfrom systems import models as system_models\nfrom datetime import datetime, timedelta\nfrom libs import ldap_lib\nimport settings\nfrom settings.local import USER_SYSTEM_ALLOWED_DELETE, FROM_EMAIL_ADDRESS, UNAUTHORIZED_EMAIL_ADDRESS\nfrom settings import BUG_URL as BUG_URL\nfrom django.core.exceptions import PermissionDenied\nfrom django.shortcuts import redirect, get_object_or_404, render\nfrom libs.jinja import render_to_response as render_to_response\nfrom django.views.decorators.csrf import csrf_exempt\nfrom django.core.paginator import Paginator, EmptyPage, PageNotAnInteger\nfrom MozInvAuthorization.UnmanagedSystemACL import UnmanagedSystemACL\n\n\n\n\n\n\n\n\n\n#def license_new(request):\n#\treturn render_to_response('user_systems/userlicense_new.html')\n\n \n\n\n \n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def license_version_search(request):\n query = request.GET.get('query')\n tmp = [str(m['version']) for m in models.UserLicense.objects.filter(version__icontains=query).values('version').distinct()]\n versions = list(set(tmp))\n ret_dict = {}\n ret_dict['query'] = query\n ret_dict['suggestions'] = versions\n ret_dict['data'] = versions\n return HttpResponse(json.dumps(ret_dict))", "metadata": "root.license_version_search", "header": "['module', '___EOS___']", "index": 27 }, { "content": "def license_type_search(request):\n query = request.GET.get('query')\n types = [m['license_type'] for m in models.UserLicense.objects.filter(license_type__icontains=query).values('license_type').distinct()]\n ret_dict = {}\n ret_dict['query'] = query\n ret_dict['suggestions'] = types\n ret_dict['data'] = types\n return HttpResponse(json.dumps(ret_dict))", "metadata": "root.license_type_search", "header": "['module', '___EOS___']", "index": 37 }, { "content": "@csrf_exempt\ndef owners_quicksearch_ajax(request):\n \"\"\"Returns systems sort table\"\"\"\n search = request.POST['quicksearch']\n filters = [Q(**{\"%s__icontains\" % t: search})\n for t in models.Owner.search_fields]\n\n owners = models.Owner.objects.filter(\n reduce(operator.or_, filters))\n\n return render_to_response('user_systems/owners_quicksearch.html', {\n 'owners': owners,\n },\n RequestContext(request))", "metadata": "root.owners_quicksearch_ajax", "header": "['module', '___EOS___']", "index": 45 }, { "content": "@csrf_exempt\ndef license_edit(request, object_id):\n license = get_object_or_404(models.UserLicense, pk=object_id)\n if request.method == 'POST':\n form = forms.UserLicenseForm(request.POST, instance=license)\n if form.is_valid():\n form.save()\n return HttpResponseRedirect('/user_systems/licenses/')\n else:\n form = forms.UserLicenseForm(instance=license)\n\n return render_to_response('user_systems/userlicense_form.html', {\n 'form': form,\n },\n RequestContext(request))", "metadata": "root.license_edit", "header": "['module', '___EOS___']", "index": 59 }, { "content": "def owner_list(request):\n owners = models.Owner.objects.select_related('user_location').all()\n upgradeable_users = models.Owner.objects.filter(unmanagedsystem__date_purchased__lt=datetime.now() - timedelta(days=730)).distinct().count()\n return render_to_response('user_systems/owner_list.html', {\n 'owner_list': owners,\n 'upgradeable_users':upgradeable_users,\n },\n RequestContext(request))", "metadata": "root.owner_list", "header": "['module', '___EOS___']", "index": 74 }, { "content": "def owner_show(request, object_id):\n owner = get_object_or_404(models.Owner, pk=object_id)\n\n return render_to_response('user_systems/owner_detail.html', {\n 'owner': owner,\n },\n RequestContext(request))", "metadata": "root.owner_show", "header": "['module', '___EOS___']", "index": 82 }, { "content": "def owner_delete(request, object_id):\n owner = get_object_or_404(models.Owner, pk=object_id)\n if request.method == \"POST\":\n owner.delete()\n return HttpResponseRedirect('/user_systems/owners/')\n else:\n return render_to_response('user_systems/owner_confirm_delete.html', {\n 'owner': owner,\n },\n RequestContext(request))", "metadata": "root.owner_delete", "header": "['module', '___EOS___']", "index": 90 }, { "content": "@csrf_exempt\ndef owner_edit(request, object_id):\n owner = get_object_or_404(models.Owner, pk=object_id)\n initial = {}\n if request.method == 'POST':\n form = forms.OwnerForm(request.POST, instance=owner)\n if form.is_valid():\n form.save()\n return HttpResponseRedirect('/user_systems/owners/')\n else:\n form = forms.OwnerForm(instance=owner)\n\n return render_to_response('user_systems/owner_form.html', {\n 'form': form,\n },\n RequestContext(request))", "metadata": "root.owner_edit", "header": "['module', '___EOS___']", "index": 100 }, { "content": "def owner_create(request):\n initial = {}\n if request.method == 'POST':\n form = forms.OwnerForm(request.POST, initial=initial)\n if form.is_valid():\n form.save()\n return HttpResponseRedirect('/user_systems/owners/')\n else:\n form = forms.OwnerForm(initial=initial)\n\n return render_to_response('user_systems/owner_form.html', {\n 'form': form,\n },\n RequestContext(request))", "metadata": "root.owner_create", "header": "['module', '___EOS___']", "index": 116 }, { "content": "def license_new(request):\n initial = {}\n if request.method == 'POST':\n form = forms.UserLicenseForm(request.POST, initial=initial)\n if form.is_valid():\n form.save()\n return HttpResponseRedirect('/user_systems/licenses/')\n else:\n form = forms.UserLicenseForm(initial=initial)\n\n return render_to_response('user_systems/userlicense_form.html', {\n 'form': form,\n },\n RequestContext(request))", "metadata": "root.license_new", "header": "['module', '___EOS___']", "index": 131 }, { "content": "def license_quicksearch_ajax(request):\n \"\"\"Returns systems sort table\"\"\"\n # Try to get quicksearch from post\n # If fail, try to get from GET\n # return None otherwise\n search = request.GET.get('quicksearch', None)\n if search:\n filters = [Q(**{\"%s__icontains\" % t: search})\n for t in models.UserLicense.search_fields]\n\n licenses = models.UserLicense.objects.filter(\n reduce(operator.or_, filters))\n else:\n licenses = None\n return render_to_response('user_systems/license_quicksearch.html', {\n 'licenses': licenses,\n },\n RequestContext(request))", "metadata": "root.license_quicksearch_ajax", "header": "['module', '___EOS___']", "index": 146 }, { "content": "@csrf_exempt\ndef user_system_quicksearch_ajax(request):\n \"\"\"Returns systems sort table\"\"\"\n search = request.POST['quicksearch']\n filters = [\n Q(**{\"%s__icontains\" % t: search})\n for t in models.UnmanagedSystem.search_fields\n ]\n\n systems = models.UnmanagedSystem.objects.filter(\n reduce(operator.or_, filters)\n )\n\n # For some reason systems are referencing server model classes that do not\n # exist. I have no idea how this happened but it did. If accessing the\n # server model causes and error set the server_model to None so we don't\n # get an exception later during page loads.\n # TOOD: Clean up defunt server model references\n for s in systems:\n try:\n s.server_model\n except:\n s.server_model = None\n\n return render_to_response(\n 'user_systems/quicksearch.html',\n {'systems': systems, 'BUG_URL': BUG_URL},\n RequestContext(request)\n )", "metadata": "root.user_system_quicksearch_ajax", "header": "['module', '___EOS___']", "index": 166 }, { "content": "@csrf_exempt\ndef user_system_view(request, template, data, instance=None):\n if request.method == 'POST':\n post_data = request.POST.copy()\n\n owner, c = models.Owner.objects.get_or_create(\n name=request.POST['owner_name'])\n\n post_data['owner'] = owner.id\n\n try:\n os, c = models.OperatingSystem.objects.get_or_create(\n name=request.POST['js_os_name'],\n version=request.POST['js_os_version'])\n post_data['operating_system'] = os.id\n except KeyError:\n pass\n\n try:\n server_model, c = models.ServerModel.objects.get_or_create(\n vendor=request.POST['js_server_model_vendor'],\n model=request.POST['js_server_model_model'])\n post_data['server_model'] = server_model.id\n except KeyError:\n pass\n\n if instance:\n old_owner = instance.owner\n old_serial = instance.serial\n old_asset_tag = instance.asset_tag\n old_notes = instance.notes\n else:\n old_owner = None\n old_serial = None\n old_asset_tag = None\n old_notes = None\n\n form = forms.UserSystemForm(post_data, instance=instance)\n if form.is_valid():\n saved_instance = form.save()\n if not instance or old_notes != saved_instance.notes:\n if old_notes:\n models.History(\n change=\"Notes changed from %s\" % old_notes,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if saved_instance.notes:\n models.History(\n change=\"Notes changed to %s\" % saved_instance.notes,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n else:\n models.History(\n change=\"System has no Notes\",\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if not instance or old_asset_tag != saved_instance.asset_tag:\n if old_asset_tag:\n models.History(\n change=\"Asset Tag changed from %s\" % old_asset_tag,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if saved_instance.asset_tag:\n models.History(\n change=\"Asset Tag changed to %s\" % saved_instance.asset_tag,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n else:\n models.History(\n change=\"System has no Asset Tag\",\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if not instance or old_serial != saved_instance.serial:\n if old_serial:\n models.History(\n change=\"Serial changed from %s\" % old_serial,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if saved_instance.serial:\n models.History(\n change=\"Serial changed to %s\" % saved_instance.serial,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n else:\n models.History(\n change=\"System has no serial\",\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if not instance or old_owner != saved_instance.owner:\n if old_owner:\n models.History(\n change=\"Owner changed from %s\" % old_owner,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n if saved_instance.owner:\n models.History(\n change=\"Owner changed to %s\" % saved_instance.owner,\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n else:\n models.History(\n change=\"System has no owner\",\n changed_by=get_changed_by(request),\n system=saved_instance).save()\n return redirect('user-system-list')\n else:\n form = forms.UserSystemForm(instance=instance)\n\n data['form'] = form\n if settings.USE_LDAP:\n the_owner_list = ldap_lib.get_all_names()\n else:\n the_owner_list = []\n the_owner_list.append(\"STOCK\")\n the_owner_list.append(\"STOCK-SFO\")\n the_owner_list.append(\"STOCK-MTV\")\n the_owner_list.append(\"STOCK-TOR\")\n the_owner_list.append(\"STOCK-LON\")\n the_owner_list.append(\"STOCK-PAR\")\n the_owner_list.append(\"STOCK-PDX\")\n the_owner_list.append(\"desktop-mtv1\")\n the_owner_list.append(\"desktop-sfo1\")\n the_owner_list.append(\"desktop-tor1\")\n the_owner_list.append(\"desktop-lon1\")\n the_owner_list.append(\"desktop-par1\")\n the_owner_list.append(\"desktop-yvr1\")\n the_owner_list.append(\"Release Engineering\")\n data['owner_json'] = json.dumps(the_owner_list)\n\n #data['owner_json'] = json.dumps(ldap_lib.get_all_names())\n #data['owner_json'].append(\"Stock\")\n\n return render_to_response(template, data, RequestContext(request))", "metadata": "root.user_system_view", "header": "['module', '___EOS___']", "index": 196 }, { "content": "def get_changed_by(request):\n try:\n remote_user = request.META['REMOTE_USER']\n except:\n remote_user = None\n\n return remote_user", "metadata": "root.get_changed_by", "header": "['module', '___EOS___']", "index": 329 }, { "content": "def license_show(request, object_id):\n license = get_object_or_404(models.UserLicense, pk=object_id)\n\n return render_to_response('user_systems/userlicense_detail.html', {\n 'license': license,\n },RequestContext(request) )", "metadata": "root.license_show", "header": "['module', '___EOS___']", "index": 340 }, { "content": "def license_index(request):\n from settings import BUG_URL as BUG_URL\n system_list = models.UserLicense.objects.select_related('owner').all()\n paginator = Paginator(system_list, 25) \n \n if 'page' in request.GET:\n page = request.GET.get('page')\n else: \n page = 1\n \n try:\n systems = paginator.page(page)\n except PageNotAnInteger:\n # If page is not an integer, deliver first page.\n systems = paginator.page(1)\n except EmptyPage:\n # If page is out of range (e.g. 9999), deliver last page of results.\n systems = paginator.page(paginator.num_pages)\n\n return render_to_response('user_systems/userlicense_list.html', {\n 'license_list': systems,\n 'BUG_URL': BUG_URL\n },RequestContext(request) )", "metadata": "root.license_index", "header": "['module', '___EOS___']", "index": 346 }, { "content": "def user_system_index(request):\n from settings import BUG_URL as BUG_URL\n system_list = models.UnmanagedSystem.objects.select_related('owner', 'server_model', 'operating_system').order_by('owner__name')\n paginator = Paginator(system_list, 25) \n \n if 'page' in request.GET:\n page = request.GET.get('page')\n else: \n page = 1\n \n try:\n systems = paginator.page(page)\n except PageNotAnInteger:\n # If page is not an integer, deliver first page.\n systems = paginator.page(1)\n except EmptyPage:\n # If page is out of range (e.g. 9999), deliver last page of results.\n systems = paginator.page(paginator.num_pages)\n\n return render_to_response('user_systems/unmanagedsystem_list.html', {\n 'user_system_list': systems,\n 'BUG_URL': BUG_URL\n },RequestContext(request) )", "metadata": "root.user_system_index", "header": "['module', '___EOS___']", "index": 369 }, { "content": "def license_delete(request, object_id):\n license = get_object_or_404(models.UserLicense, pk=object_id)\n try:\n license.delete()\n return HttpResponseRedirect( reverse('license-list') )\n except PermissionDenied, e:\n return render_to_response('user_systems/unauthorized_delete.html', {\n 'content': 'You do not have permission to delete this license',\n },\n RequestContext(request))", "metadata": "root.license_delete", "header": "['module', '___EOS___']", "index": 394 }, { "content": "def unmanaged_system_delete(request, object_id):\n #Dummy comment\n user_system = get_object_or_404(models.UnmanagedSystem, pk=object_id)\n if request.method == 'POST':\n try:\n acl = UnmanagedSystemACL(request)\n acl.check_delete()\n user_system_notes = user_system.notes\n user_system.delete()\n send_mail('System Deleted', '%s Deleted by %s\\nSystem Notes:\\n%s' % (user_system, request.user.username, user_system_notes), FROM_EMAIL_ADDRESS, UNAUTHORIZED_EMAIL_ADDRESS, fail_silently=False)\n return HttpResponseRedirect( reverse('user-system-list') )\n except PermissionDenied, e:\n send_mail('Unauthorized System Delete Attempt', 'Unauthorized Attempt to Delete %s by %s' % (user_system, request.user.username), FROM_EMAIL_ADDRESS, UNAUTHORIZED_EMAIL_ADDRESS, fail_silently=False)\n return render_to_response('user_systems/unauthorized_delete.html', {\n 'content': 'You do not have permission to delete this system',\n },\n RequestContext(request))\n else:\n return render_to_response('user_systems/unmanagedsystem_confirm_delete.html', {\n 'owner': user_system,\n },\n RequestContext(request))", "metadata": "root.unmanaged_system_delete", "header": "['module', '___EOS___']", "index": 405 }, { "content": "def show_by_model(request, object_id):\n system_list = models.UnmanagedSystem.objects.filter(server_model=models.ServerModel.objects.get(id=object_id))\n if 'show_all' in request.GET:\n paginator = Paginator(system_list, system_list.count()) \n else:\n paginator = Paginator(system_list, 25) \n \n if 'page' in request.GET:\n page = request.GET.get('page')\n else: \n page = 1\n \n try:\n systems = paginator.page(page)\n except PageNotAnInteger:\n # If page is not an integer, deliver first page.\n systems = paginator.page(1)\n except EmptyPage:\n # If page is out of range (e.g. 9999), deliver last page of results.\n systems = paginator.page(paginator.num_pages)\n return render_to_response('user_systems/unmanagedsystem_list.html', {\n 'user_system_list': systems,\n 'show_all': True,\n },\n RequestContext(request))", "metadata": "root.show_by_model", "header": "['module', '___EOS___']", "index": 429 }, { "content": "def user_system_show(request, object_id):\n system = get_object_or_404(models.UnmanagedSystem, id=object_id)\n #system = models.UnmanagedSystem.objects.select_related(\n # 'owner', 'server_model', 'operating_system'\n # ).filter(asset_tag=id).order_by('owner__name')\n\n #system = get_object_or_404(models.UnmanagedSystem\n return render_to_response('user_systems/unmanagedsystem_detail.html', {\n 'user_system': system,\n 'settings': settings,\n },\n RequestContext(request))", "metadata": "root.user_system_show", "header": "['module', '___EOS___']", "index": 455 }, { "content": "def user_system_show_by_asset_tag(request, id):\n system = get_object_or_404(models.UnmanagedSystem, asset_tag=id)\n #system = models.UnmanagedSystem.objects.select_related(\n # 'owner', 'server_model', 'operating_system'\n # ).filter(asset_tag=id).order_by('owner__name')\n\n #system = get_object_or_404(models.UnmanagedSystem\n return render_to_response('user_systems/unmanagedsystem_detail.html', {\n 'user_system': system,\n },\n RequestContext(request))", "metadata": "root.user_system_show_by_asset_tag", "header": "['module', '___EOS___']", "index": 467 }, { "content": "def user_system_new(request):\n return user_system_view(\n request,\n 'user_systems/unmanagedsystem_create.html',\n {})", "metadata": "root.user_system_new", "header": "['module', '___EOS___']", "index": 480 }, { "content": "@csrf_exempt\ndef user_system_edit(request, id):\n system = get_object_or_404(models.UnmanagedSystem, pk=id)\n\n return user_system_view(\n request,\n 'user_systems/unmanagedsystem_modify.html', {\n 'system': system},\n system)", "metadata": "root.user_system_edit", "header": "['module', '___EOS___']", "index": 487 }, { "content": "def user_system_csv(request):\n systems = models.UnmanagedSystem.objects.all().order_by('owner__name')\n try:\n ref_split = request.META['HTTP_REFERER'].split('/')\n type, id = ref_split[-3:-1]\n if type == 'model':\n systems = systems.filter(server_model__id=id)\n except:\n pass\n\n\n response = HttpResponse(mimetype='text/csv')\n response['Content-Disposition'] = 'attachment; filename=user_systems.csv'\n\n writer = csv.writer(response)\n writer.writerow(['Owner', 'Location', 'Serial', 'Asset Tag',\n 'Operating System', 'Model', 'Date Purchased', 'Cost'])\n\n for s in systems:\n try:\n location = s.owner.user_location\n except AttributeError:\n location = ''\n writer.writerow([s.owner, location, s.serial, s.asset_tag,\n s.operating_system, s.server_model, s.date_purchased, s.cost])\n\n return response", "metadata": "root.user_system_csv", "header": "['module', '___EOS___']", "index": 498 }, { "content": "def fillin_csv(request):\n \"\"\"Important columns:\n 4: serial number\n 6: employee\n 7: location\n \"\"\"\n\n if request.method == 'POST':\n f = forms.CSVForm(request.POST, request.FILES)\n if f.is_valid():\n response = HttpResponse(mimetype='text/csv')\n response['Content-Disposition'] = 'attachment; filename=ComputerEquipment.csv'\n in_csv = csv.reader(f.cleaned_data['csv'].read().splitlines())\n out_csv = csv.writer(response)\n for row in in_csv:\n if row[4]:\n serials = [i.strip() for i in row[4].split(';')]\n owners = [\n str(i.owner)\n for i in models.UnmanagedSystem.objects.filter(\n serial__in=serials).filter(owner__isnull=False)]\n locations = [\n str(i.system_rack.location)\n for i in system_models.System.objects.filter(\n serial__in=serials).filter(system_rack__location__isnull=False)]\n\n locations += [\n str(i.owner.user_location)\n for i in models.UnmanagedSystem.objects.filter(\n serial__in=serials).filter(owner__user_location__isnull=False)]\n\n if owners:\n row[6] = \"; \".join(owners)\n if locations:\n row[7] = \"; \".join(locations)\n\n out_csv.writerow(row)\n return response\n else:\n f = forms.CSVForm()\n\n return render_to_response(\n 'user_systems/fillin_csv.html',\n {'form': f},\n RequestContext(request))", "metadata": "root.fillin_csv", "header": "['module', '___EOS___']", "index": 527 } ]

[ { "span": "from django.forms.extras.widgets import SelectDateWidget", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 56 }, { "span": "from django.db import connection", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 32 }, { "span": "from settings.local import USER_SYSTEM_ALLOWED_DELETE, FROM_EMAIL_ADDRESS, UNAUTHORIZED_EMAIL_ADDRESS", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 101 }, { "span": "from django.shortcuts import redirect, get_object_or_404, render", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 64 } ]

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[ { "content": "class Options(usage.Options, app.ReactorSelectionMixin):\n synopsis = \"\"\"%s [options] [[file|package|module|TestCase|testmethod]...]\n \"\"\" % (os.path.basename(sys.argv[0]),)\n longdesc = (\"trial loads and executes a suite of unit tests, obtained \"\n \"from modules, packages and files listed on the command line.\")\n\n optFlags = [[\"help\", \"h\"],\n [\"rterrors\", \"e\", \"realtime errors, print out tracebacks as \"\n \"soon as they occur\"],\n [\"debug\", \"b\", \"Run tests in the Python debugger. Will load \"\n \"'.pdbrc' from current directory if it exists.\"],\n [\"debug-stacktraces\", \"B\", \"Report Deferred creation and \"\n \"callback stack traces\"],\n [\"nopm\", None, \"don't automatically jump into debugger for \"\n \"postmorteming of exceptions\"],\n [\"dry-run\", 'n', \"do everything but run the tests\"],\n [\"force-gc\", None, \"Have Trial run gc.collect() before and \"\n \"after each test case.\"],\n [\"profile\", None, \"Run tests under the Python profiler\"],\n [\"unclean-warnings\", None,\n \"Turn dirty reactor errors into warnings\"],\n [\"until-failure\", \"u\", \"Repeat test until it fails\"],\n [\"no-recurse\", \"N\", \"Don't recurse into packages\"],\n ['help-reporters', None,\n \"Help on available output plugins (reporters)\"]\n ]\n\n optParameters = [\n [\"logfile\", \"l\", \"test.log\", \"log file name\"],\n [\"random\", \"z\", None,\n \"Run tests in random order using the specified seed\"],\n ['temp-directory', None, '_trial_temp',\n 'Path to use as working directory for tests.'],\n ['reporter', None, 'verbose',\n 'The reporter to use for this test run. See --help-reporters for '\n 'more info.']]\n\n zsh_actions = {\"tbformat\":\"(plain emacs cgitb)\",\n \"reporter\":_zshReporterAction}\n zsh_actionDescr = {\"logfile\":\"log file name\",\n \"random\":\"random seed\"}\n zsh_extras = [\"*:file|module|package|TestCase|testMethod:_files -g '*.py'\"]\n\n fallbackReporter = reporter.TreeReporter\n extra = None\n tracer = None\n\n\n\n\n\n\n\n\n\n\n\n\n\n opt_x = opt_extra\n\n\n\n\n\n\n", "metadata": "root.Options", "header": "['module', '___EOS___']", "index": 91 } ]

[ { "span": "\"realtime errors, print out tracebacks as \"\n \"soon as they occur\"]", "start_line": 98, "start_column": 34, "end_line": 99, "end_column": 37 }, { "span": "\"Run tests in the Python debugger. Will load \"\n \"'.pdbrc' from current directory if it exists.\"]", "start_line": 100, "start_column": 31, "end_line": 101, "end_column": 64 }, { "span": "\"Report Deferred creation and \"\n \"callback stack traces\"]", "start_line": 102, "start_column": 43, "end_line": 103, "end_column": 40 }, { "span": "\"don't automatically jump into debugger for \"\n \"postmorteming of exceptions\"]", "start_line": 104, "start_column": 31, "end_line": 105, "end_column": 46 }, { "span": "\"Have Trial run gc.collect() before and \"\n \"after each test case.\"]", "start_line": 107, "start_column": 35, "end_line": 108, "end_column": 40 }, { "span": "'The reporter to use for this test run. See --help-reporters for '\n 'more info.']", "start_line": 125, "start_column": 9, "end_line": 126, "end_column": 21 } ]

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[ { "content": "'''gff_compare.py - compare two gene sets\n======================================\n\n:Author: Andreas Heger\n:Release: $Id$\n:Date: |today|\n:Tags: Python\n\nPurpose\n-------\n\nThis script benchmarks two gene predictions. Predictions are given as\ngff files.\n\nThis script is transcript aware but not gene aware, i.e. if there are several\ntranscripts for a gene, overcounting happens.\n\nUsage\n-----\n\nExample::\n\n python gff_compare.py --help\n\nType::\n\n python gff_compare.py --help\n\nfor command line help.\n\nCommand line options\n--------------------\n\n'''\nimport sys\nimport re\nimport CGAT.Experiment as E\nimport numpy\n\n\n\n# ------------------------------------------------------------------------\n\n\n\n# ------------------------------------------------------------------------\n\n\n\n# ------------------------------------------------------------------------\n\n\n\n# ------------------------------------------------------------------------\n\n\n\n\n# ------------------------------------------------------------------------\n\n# ------------------------------------------------------------------------\n\n\n\n# ------------------------------------------------------------------------\n\n\n\n\nif __name__ == \"__main__\":\n sys.exit(main(sys.argv))\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def main(argv=None):\n \"\"\"script main.\n\n parses command line options in sys.argv, unless *argv* is given.\n \"\"\"\n\n if argv is None:\n argv = sys.argv\n\n parser = E.OptionParser(\n version=\"%prog version: $Id: gff_compare.py 2781 2009-09-10 11:33:14Z andreas $\", usage=globals()[\"__doc__\"])\n\n parser.add_option(\"-f\", \"--output-full\", dest=\"write_full\",\n help=\"write full gff entries.\", action=\"store_true\")\n parser.add_option(\"-e\", \"--output-matched-exons\", dest=\"write_matched_exons\",\n help=\"write matched exons.\", action=\"store_true\")\n parser.add_option(\"-o\", \"--output-missed-exons\", dest=\"write_missed_exons\", action=\"store_true\",\n help=\"write missed exons.\")\n parser.add_option(\"-g\", \"--output-missed-genes\", dest=\"write_missed_genes\", action=\"store_true\",\n help=\"write missed genes.\")\n parser.add_option(\"-r\", \"--regex-reference\", dest=\"regex_reference\", type=\"string\",\n help=\"regular expression mapping exon to transcript in reference.\")\n parser.add_option(\"-t\", \"--regex-target\", dest=\"regex_target\", type=\"string\",\n help=\"regular expression mapping exon to transcript in target.\")\n parser.add_option(\"--no-nucleotides\", dest=\"do_nucleotides\", action=\"store_false\",\n help=\"skip nucleotide benchmark.\")\n parser.add_option(\"--no-exons\", dest=\"do_exons\", action=\"store_false\",\n help=\"skip exon benchmark.\")\n parser.add_option(\"--no-genes\", dest=\"do_genes\", action=\"store_false\",\n help=\"skip gene benchmark.\")\n parser.add_option(\"--output-filename-pattern\", dest=\"outfile_pattern\", type=\"string\",\n help=\"output filename pattern for extra info (%s will be substituted with reference,target).\")\n\n parser.set_defaults(\n remove_redundancy=False,\n max_exon_slippage=9,\n write_missed_exons=False,\n write_matched_exons=False,\n write_missed_genes=False,\n write_wrong_exons=False,\n write_wrong_genes=False,\n do_nucleotides=True,\n do_exons=True,\n do_genes=True,\n regex_reference=None,\n regex_target=None,\n outfile_pattern=\"%s.info\",\n )\n\n (options, args) = E.Start(parser)\n\n if len(args) != 2:\n print USAGE\n print \"two arguments required\"\n sys.exit(1)\n\n input_filename_target, input_filename_reference = args\n\n if options.loglevel >= 1:\n print \"# target entries from %s\" % input_filename_target\n print \"# reading target entries ...\",\n sys.stdout.flush()\n\n gff_targets = GTF.readFromFile(open(input_filename_target, \"r\"))\n\n if options.loglevel >= 1:\n print \"finished: %i\" % (len(gff_targets))\n sys.stdout.flush()\n\n if options.loglevel >= 1:\n print \"# reference entries from %s\" % input_filename_reference\n print \"# reading reference entries ...\",\n sys.stdout.flush()\n\n gff_references = GTF.readFromFile(open(input_filename_reference, \"r\"))\n\n if options.loglevel >= 1:\n print \"finished: %i\" % (len(gff_references))\n sys.stdout.flush()\n\n if options.remove_redundancy:\n gff_targets = GTF.CombineOverlaps(gff_targets)\n gff_references = GTF.CombineOverlaps(gff_references)\n\n if options.loglevel >= 1:\n print \"# after filtering: targets=%i, references=%i\" % (len(gff_targets), len(gff_references))\n\n ##########################################################################\n # sort exons\n if options.loglevel >= 1:\n print \"# sorting exons ...\",\n sys.stdout.flush()\n\n gff_targets.sort(lambda x, y: cmp((x.mName, x.strand, x.start, x.end),\n (y.mName, y.strand, y.start, y.end)))\n\n gff_references.sort(lambda x, y: cmp((x.mName, x.strand, x.start, x.end),\n (y.mName, y.strand, y.start, y.end)))\n\n ntargets = len(gff_targets)\n nreferences = len(gff_references)\n\n if options.loglevel >= 1:\n print \"finished\"\n sys.stdout.flush()\n\n ##########################################################################\n # get nucleotide level accuracy\n # process each fragment separately\n if options.do_nucleotides:\n print \"\"\"##############################################################################\n# nucleotide accuracy\n#\n# TP: true postives : nucleotides to be predicted coding in both target and reference.\n# FN: true negatives : nucleotides to be predicted non-coding in both target and reference.\n# FP: false positives: nucleotides to be predicted non-coding in target but not in reference.\n# FN: false negatives: nucleotides to be predicted non-coding in reference but not in target.\n#\n# Sensitivity: TP / TP + FN = correct exons / actual exons\n# Specificity: TP / TP + FP\n# CC: correlation coefficient: (tp*tn-fn*fp)/((tp+fn)*(tn+fp)*(tp+fp)*(tn+fn))\"\"\"\n\n headers = (\n \"contig\", \"strand\", \"tp\", \"fp\", \"tn\", \"fn\", \"sp\", \"sn\", \"cc\")\n\n print \"\\t\".join(headers)\n\n first_r, first_t = 0, 0\n r, t = 0, 0\n\n ttp, tfp, ttn, tfn = 0, 0, 0, 0\n\n # this only works, if all contigs in reference are present in target.\n while r < nreferences and t < ntargets:\n\n this_name = gff_references[r].mName\n this_strand = gff_references[r].strand\n\n # get all in references\n while r < nreferences and \\\n gff_references[r].mName == this_name and \\\n gff_references[r].strand == this_strand:\n r += 1\n\n # skip over extra contigs in target\n while t < ntargets and \\\n (gff_targets[t].mName != this_name or\n gff_targets[t].strand != this_strand):\n t += 1\n first_t = t\n\n # get all in targets\n while t < ntargets and \\\n gff_targets[t].mName == this_name and \\\n gff_targets[t].strand == this_strand:\n t += 1\n\n tp, fp, tn, fn = AnalyseOverlaps(gff_references[first_r:r],\n gff_targets[first_t:t])\n\n spec, sens = CalculateSpecificitySensitivity(tp, fp, tn, fn)\n cc = CalculateCorrelationCoefficient(tp, fp, tn, fn)\n print \"%s\\t%s\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\" % (this_name, this_strand, tp, fp, tn, fn, spec, sens, cc)\n\n ttp += tp\n tfp += fp\n ttn += tn\n tfn += fn\n first_r, first_t = r, t\n\n spec, sens = CalculateSpecificitySensitivity(ttp, tfp, ttn, tfn)\n cc = CalculateCorrelationCoefficient(ttp, tfp, ttn, tfn)\n print \"%s\\t%s\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\" % (\"all\", \"all\", ttp, tfp, ttn, tfn, spec, sens, cc)\n\n sys.stdout.flush()\n\n ##########################################################################\n if options.do_exons or options.do_genes:\n\n print \"\"\"##############################################################################\n# exon accuracy (see Burset & Guigo (1996))\n#\n# TP: true postives : exons matching both exon boundaries exactly (a deviation of\n# maximal %i nucleotides is allowed).\n# FN: true negatives : not counted.\n# FP: false positives: exons in target not overlapping with in reference.\n# FN: false negatives: exons overlapping, but with deviant boundaries and exons\n# in reference not overlapping with any target exon.\n#\n# ME: missed exons: exons in reference not overlapping with exons in target\n# (add to false negative count).\n# WE: wrong exons: exons in target not overlapping with exons in reference\n# (add to false positive count).\n#\n# Sensitivity: TP / (TP + FN) = correct exons / actual exons\n# Specificity: TP / (TP + FP) = correct exons / predicted exons\n# CC: (sensitivity + specificity) / 2\n#\n# Values are calculated where both exon boundaries of a target exon have to be\n# correct (category \"full\") and where only one exon boundary has to be correct (catgory \"half\").\"\"\" %\\\n (options.max_exon_slippage)\n\n headers = (\"category\", \"contig\", \"strand\", \"tp\", \"fp\", \"tn\",\n \"fn\", \"sp\", \"sn\", \"cc\", \"me\", \"we\", \"me\", \"we\")\n\n print \"\\t\".join(headers)\n\n r, t = 0, 0\n next_r, next_t = r, t\n\n # strict false positves/negatives\n tp, fp, tn, fn = 0, 0, 0, 0\n ttp, tfp, ttn, tfn = 0, 0, 0, 0\n # partial false positives/negatives\n ptp, pfp, ptn, pfn = 0, 0, 0, 0\n tptp, tpfp, tptn, tpfn = 0, 0, 0, 0\n\n # missed and wrong exons\n missed_exons, wrong_exons = 0, 0\n tmissed_exons, twrong_exons = 0, 0\n\n # Flag set, if partial overlap in previous pair\n last_partial_overlap = False\n # Flag set, if partial overlap and reference was last increased\n last_increased_ref = False\n\n while r < nreferences and t < ntargets:\n\n this_name = gff_references[r].mName\n this_strand = gff_references[r].strand\n\n # get overlap segments\n if next_r == r:\n ref_overlaps, next_r, ref_start, ref_end = GetFirstOverlaps(\n gff_references, r)\n if next_t == t:\n target_overlaps, next_t, target_start, target_end = GetFirstOverlaps(\n gff_targets, t)\n\n if options.loglevel >= 3:\n print \"########################################################\"\n for x in ref_overlaps:\n print \"#\", str(x)\n for x in target_overlaps:\n print \"#\", str(x)\n\n do_summary = False\n # check strand switch in reference\n if next_r < nreferences and \\\n (this_name != gff_references[next_r].mName or\n this_strand != gff_references[next_r].strand):\n if options.loglevel >= 3:\n print \"# target advance\"\n do_summary = True\n\n last_increased_ref = False\n last_partial_overlap = False\n\n # advance in target until next name is found\n next_name = gff_references[next_r].mName\n next_strand = gff_references[next_r].strand\n while next_t < ntargets and \\\n next_name != gff_targets[next_t].mName or \\\n next_strand != gff_targets[next_t].strand:\n fp += 1\n pfp += 1\n target_overlaps, next_t, target_start, target_end = GetFirstOverlaps(\n gff_targets, next_t)\n\n for x in gff_targets[t:next_t]:\n x.mStatus = \"extra\"\n for x in gff_references[r:next_r]:\n x.mStatus = \"extra\"\n\n r, t = next_r, next_t\n # check strand switch in target\n elif next_t < ntargets and \\\n (this_name != gff_targets[next_t].mName or\n this_strand != gff_targets[next_t].strand):\n # advance in reference until next name is found\n if options.loglevel >= 3:\n print \"# reference advance\"\n do_summary = True\n\n last_increased_ref = False\n last_partial_overlap = False\n\n next_name = gff_targets[next_t].mName\n next_strand = gff_targets[next_t].strand\n while next_r < nreferences and \\\n next_name != gff_references[next_r].mName or \\\n next_strand != gff_references[next_r].strand:\n fn += 1\n pfn += 1\n reference_overlaps, next_r, references_start, references_end = GetFirstOverlaps(\n gff_references, next_r)\n\n for x in gff_targets[t:next_t]:\n x.mStatus = \"extra\"\n for x in gff_references[r:next_r]:\n x.mStatus = \"extra\"\n\n r, t = next_r, next_t\n # otherwise\n else:\n\n ref_status, target_status = None, None\n\n if options.loglevel >= 3:\n print \"# same chromosome\"\n\n # overlap between segments\n if min(ref_end, target_end) - max(ref_start, target_start) > 0:\n\n # clear flags\n last_increased_ref = False\n last_partial_overlap = False\n found = False\n\n for rr in ref_overlaps:\n xfound = False\n for tt in target_overlaps:\n if GTF.Identity(rr, tt, max_slippage=options.max_exon_slippage):\n xfound = True\n break\n if xfound:\n found = True\n break\n\n if found:\n ref_status = \"match\"\n target_status = \"match\"\n tp += 1\n ptp += 1\n if options.write_matched_exons:\n print \"############# matching exons ###########################\"\n for x in ref_overlaps:\n print \"#\", str(x)\n for x in target_overlaps:\n print \"#\", str(x)\n else:\n fn += 1\n\n # check for one-sided matches\n for rr in ref_overlaps:\n xfound = False\n for tt in target_overlaps:\n if GTF.HalfIdentity(rr, tt, max_slippage=options.max_exon_slippage):\n xfound = True\n break\n if xfound:\n found = True\n break\n\n if found:\n ptp += 1\n code = \"partial\"\n ref_status = \"partial\"\n target_status = \"partial\"\n else:\n pfn += 1\n code = \"complete\"\n ref_status = \"mismatch\"\n target_status = \"mismatch\"\n\n if options.write_missed_exons:\n print \"############# %s non-overlapping exons ###########################\" % code\n for x in ref_overlaps:\n print \"#\", str(x)\n for x in target_overlaps:\n print \"#\", str(x)\n\n ###########################################################\n # r, t = next_r, next_t\n if ref_end == target_end:\n r, t = next_r, next_t\n elif ref_end < target_end:\n r = next_r\n last_increased_ref = True\n last_partial_overlap = True\n else:\n t = next_t\n last_increased_ref = False\n last_partial_overlap = True\n\n # non-overlap between segments\n else:\n\n if ref_end < target_start:\n\n # for non-overlap, check whether there was partial overlap before\n # and reference was not increased.\n # if there was, just increment reference, but do not\n # count.\n\n if not (last_partial_overlap and not last_increased_ref):\n\n if options.write_missed_exons:\n print \"############# missed exon ###########################\"\n for x in ref_overlaps:\n print \"#\", str(x)\n missed_exons += 1\n fn += 1\n pfn += 1\n ref_status = \"extra\"\n\n r = next_r\n\n else:\n\n # for non-overlap, check whether there was partial overlap before\n # and target was not increased.\n # if there was, just increment target, but do not\n # count.\n\n if not (last_partial_overlap and last_increased_ref):\n if options.write_wrong_exons:\n print \"############# wrong exon ###########################\"\n for x in target_overlaps:\n print \"#\", str(x)\n\n wrong_exons += 1\n fp += 1\n pfp += 1\n target_status = \"extra\"\n\n t = next_t\n\n last_partial_overlap = False\n\n if options.loglevel >= 3:\n print \"# ref_status=%s, target_status=%s\" % (ref_status, target_status)\n\n if ref_status:\n for rr in ref_overlaps:\n rr.mStatus = ref_status\n\n if ref_status in (\"match\", \"partial\") and options.do_genes:\n for rr in ref_overlaps:\n rr.mMatches = target_overlaps\n\n if target_status:\n for tt in target_overlaps:\n tt.mStatus = target_status\n\n if target_status in (\"match\", \"partial\") and options.do_genes:\n for tt in target_overlaps:\n tt.mMatches = ref_overlaps\n\n if do_summary or r >= nreferences or t >= ntargets:\n ttp += tp\n tfp += fp\n ttn += tn\n tfn += fn\n\n tptp += ptp\n tpfp += pfp\n tptn += ptn\n tpfn += pfn\n\n tmissed_exons += missed_exons\n twrong_exons += wrong_exons\n\n if tp + fn != 0:\n pmissed_exons = \"%5.2f\" % (float(missed_exons) / (tp + fn))\n else:\n pmissed_exons = \"0\"\n\n if tp + fp != 0:\n pwrong_exons = \"%5.2f\" % (float(wrong_exons) / (tp + fp))\n else:\n pwrong_exons = \"na\"\n\n spec, sens = CalculateSpecificitySensitivity(tp, fp, tn, fn)\n cc = (spec + sens) / 2.0\n print \"full\\t%s\\t%s\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\\t%i\\t%i\\t%s\\t%s\" % \\\n (this_name, this_strand,\n tp, fp, tn, fn,\n spec, sens, cc,\n missed_exons, wrong_exons,\n pmissed_exons, pwrong_exons)\n\n spec, sens = CalculateSpecificitySensitivity(\n ptp, pfp, ptn, pfn)\n cc = (spec + sens) / 2.0\n print \"half\\t%s\\t%s\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\\t%i\\t%i\\t%s\\t%s\" %\\\n (this_name, this_strand,\n ptp, pfp, ptn, pfn,\n spec, sens, cc,\n missed_exons, wrong_exons,\n pmissed_exons, pwrong_exons)\n\n tp, fp, tn, fn = 0, 0, 0, 0\n ptp, pfp, ptn, pfn = 0, 0, 0, 0\n missed_exons, wrong_exons = 0, 0\n\n if t < ntargets:\n for x in gff_targets[t:ntargets]:\n x.mStatus = \"extra\"\n if r < nreferences:\n for x in gff_references[r:nreferences]:\n x.mStatus = \"extra\"\n\n spec, sens = CalculateSpecificitySensitivity(ttp, tfp, ttn, tfn)\n cc = (spec + sens) / 2.0\n print \"full\\t%s\\t%s\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\\t%i\\t%i\\t%5.2f\\t%5.2f\" % \\\n (\"all\", \"all\", ttp, tfp, ttn, tfn,\n spec, sens, cc,\n tmissed_exons, twrong_exons,\n float(tmissed_exons) / (ttp + tfn),\n float(twrong_exons) / (ttp + tfp))\n\n spec, sens = CalculateSpecificitySensitivity(tptp, tpfp, tptn, tpfn)\n cc = (spec + sens) / 2.0\n print \"half\\t%s\\t%s\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\\t%i\\t%i\\t%5.2f\\t%5.2f\" %\\\n (\"all\", \"all\", tptp, tpfp, tptn, tpfn,\n spec, sens, cc,\n tmissed_exons, twrong_exons,\n float(tmissed_exons) / (ttp + tfn),\n float(twrong_exons) / (ttp + tfp))\n\n if options.do_genes and \\\n options.regex_reference and \\\n options.regex_target:\n\n print \"\"\"##############################################################################\n# gene accuracy (see Burset & Guigo (1996))\n#\n# TP: true postives : genes with exons matching both exon boundaries exactly (a deviation of\n# maximal %i nucleotides is allowed).\n# FN: true negatives : not counted.\n# FP: false positives: genes in target not overlapping with in reference.\n# FN: false negatives: genes overlapping, but with deviant exon boundaries and genes\n# in reference not overlapping with any target exon.\n#\n# MG: missed genes: exons in reference not overlapping with exons in target\n# (add to false negative count).\n# WG: wrong genes: exons in target not overlapping with exons in reference\n# (add to false positive count).\n#\n# Sensitivity: TP / (TP + FN) = correct genes / actual genes\n# Specificity: TP / (TP + FP) = correct genes / predicted genes\n# CC: (sensitivity + specificity) / 2\n#\n# Values are calculated where both exon boundaries of a target exon have to be\n# correct (category \"full\") and where only one exon boundary has to be correct (catgory \"half\").\"\"\" %\\\n (options.max_exon_slippage)\n\n out_options = []\n if options.write_missed_genes:\n out_options.append(\"missed\")\n\n if options.loglevel >= 2:\n print \"# counting matches for reference.\"\n sys.stdout.flush()\n\n (ref_total, ref_match, ref_partial, ref_extra) =\\\n CountMatchesPerGene(gff_references,\n re.compile(options.regex_reference),\n re.compile(options.regex_target),\n write=out_options,\n outfile=open(options.outfile_pattern % \"reference\", \"w\"))\n\n if options.loglevel >= 2:\n print \"# counting matches for target.\"\n sys.stdout.flush()\n\n (target_total, target_match, target_partial, target_extra) =\\\n CountMatchesPerGene(gff_targets,\n re.compile(options.regex_target),\n re.compile(\n options.regex_reference),\n write=out_options,\n outfile=open(options.outfile_pattern % \"target\", \"w\"))\n\n if options.loglevel >= 1:\n print \"# reference: genes=%6i, matches=%6i, partial=%6i, extra=%6i\" % \\\n (ref_total, ref_match, ref_partial, ref_extra)\n print \"# target : genes=%6i, matches=%6i, partial=%6i, extra=%6i\" % \\\n (target_total, target_match, target_partial, target_extra)\n\n headers = (\"category\", \"tp\", \"fp\", \"tn\", \"fn\",\n \"sp\", \"sn\", \"cc\", \"mg\", \"wg\", \"mg\", \"wg\")\n print \"\\t\".join(headers)\n\n tp = ref_match\n fp = target_extra\n tn = 0\n fn = ref_total - ref_match\n wrong_genes = target_extra\n missed_genes = ref_extra\n\n spec, sens = CalculateSpecificitySensitivity(tp, fp, tn, fn)\n cc = (spec + sens) / 2.0\n\n if tp + fp == 0:\n fp = nreferences\n\n print \"full\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\\t%i\\t%i\\t%5.2f\\t%5.2f\" % \\\n (tp, fp, tn, fn,\n spec, sens, cc,\n missed_genes, wrong_genes,\n float(missed_genes) / (tp + fn),\n float(wrong_genes) / (tp + fp))\n\n tp = ref_match + ref_partial\n fp = target_extra\n tn = 0\n fn = ref_total - ref_match - ref_partial\n wrong_genes = target_extra\n missed_genes = ref_extra\n\n spec, sens = CalculateSpecificitySensitivity(tp, fp, tn, fn)\n cc = (spec + sens) / 2.0\n print \"half\\t%i\\t%i\\t%i\\t%i\\t%5.2f\\t%5.2f\\t%5.2f\\t%i\\t%i\\t%5.2f\\t%5.2f\" % \\\n (tp, fp, tn, fn,\n spec, sens, cc,\n missed_genes, wrong_genes,\n float(missed_genes) / (tp + fn),\n float(wrong_genes) / (tp + fp))\n\n E.Stop()", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 260 } ]

[ { "span": "main(sys.argv))", "start_line": 885, "start_column": 13, "end_line": 885, "end_column": 27 } ]

[ { "span": "def main(argv=None):", "start_line": 260, "start_column": 0, "end_line": 260, "end_column": 20 } ]

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[ { "content": "import json\nimport urllib2\nimport string\nfrom settings import PROTOCOL, HOSTNAME\nfrom http_server import stop\n\n\n\n ", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def refresh_devices():\n stop()\n\n tokenFile = open(\"token.txt\")\n token = tokenFile.read()\n tokenFile.close()\n \n devicesFile = open(\"devices.txt\", \"w\")\n\n with open(\"endpoints.txt\", 'r') as fh:\n for endpoint in fh.readlines():\n if endpoint.__len__() > 1:\n ### collect devices for each endpoint\n \n for deviceType in (\"switches\", \"locks\"):\n endpoint = endpoint.strip()\n url = \"{protocol}://{hostname}{endpoint}/{deviceType}\".format(protocol=PROTOCOL, hostname=HOSTNAME, endpoint=endpoint, deviceType=deviceType)\n\n req = urllib2.Request(url)\n req.add_header('Authorization', \"Bearer %s\" % token)\n response = urllib2.urlopen(req)\n the_page = response.read()\n jsonData = json.loads(the_page)\n \n for device in jsonData:\n deviceKey = \"{endpoint}/{deviceType}/{deviceId}\".format(endpoint=endpoint, deviceType=deviceType, deviceId=device['id']) \n deviceValue = device['name'] if len(device['label']) == 0 else device['label']\n deviceCache = \"{key}:{value}\\n\".format(key=deviceKey, value=deviceValue)\n devicesFile.write(deviceCache)\n \n devicesFile.close()\n \n return \"Your SmartThings device cache has been updated\"", "metadata": "root.refresh_devices", "header": "['module', '___EOS___']", "index": 7 } ]

[ { "span": "import string", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 13 } ]

[]

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[ { "content": "\"\"\"Python Enumerations\"\"\"\n\nimport sys as _sys\n\n__all__ = ['Enum', 'IntEnum', 'unique']\n\nversion = 1, 0, 4\n\npyver = float('%s.%s' % _sys.version_info[:2])\n\ntry:\n any\nexcept NameError:\n\ntry:\n from collections import OrderedDict\nexcept ImportError:\n OrderedDict = None\n\ntry:\n basestring\nexcept NameError:\n # In Python 2 basestring is the ancestor of both str and unicode\n # in Python 3 it's just str, but was missing in 3.1\n basestring = str\n\ntry:\n unicode\nexcept NameError:\n # In Python 3 unicode no longer exists (it's just str)\n unicode = str\n\n\n\n\n\n\n\n\n\n\n\n\n\n# Dummy value for Enum as EnumMeta explicity checks for it, but of course until\n# EnumMeta finishes running the first time the Enum class doesn't exist. This\n# is also why there are checks in EnumMeta like `if Enum is not None`\nEnum = None\n\n\n\n\n########################################################\n# In order to support Python 2 and 3 with a single\n# codebase we have to create the Enum methods separately\n# and then use the `type(name, bases, dict)` method to\n# create the class.\n########################################################\ntemp_enum_dict = {}\ntemp_enum_dict['__doc__'] = \"Generic enumeration.\\n\\n Derive from this class to define new enumerations.\\n\\n\"\n\ntemp_enum_dict['__new__'] = __new__\ndel __new__\n\ntemp_enum_dict['__repr__'] = __repr__\ndel __repr__\n\ntemp_enum_dict['__str__'] = __str__\ndel __str__\n\ntemp_enum_dict['__dir__'] = __dir__\ndel __dir__\n\ntemp_enum_dict['__format__'] = __format__\ndel __format__\n\n\n####################################\n# Python's less than 2.6 use __cmp__\n\nif pyver < 2.6:\n\n temp_enum_dict['__cmp__'] = __cmp__\n del __cmp__\n\nelse:\n\n temp_enum_dict['__le__'] = __le__\n del __le__\n\n temp_enum_dict['__lt__'] = __lt__\n del __lt__\n\n temp_enum_dict['__ge__'] = __ge__\n del __ge__\n\n temp_enum_dict['__gt__'] = __gt__\n del __gt__\n \n\ntemp_enum_dict['__eq__'] = __eq__\ndel __eq__\n\ntemp_enum_dict['__ne__'] = __ne__\ndel __ne__\n\ntemp_enum_dict['__hash__'] = __hash__\ndel __hash__\n\ntemp_enum_dict['__reduce_ex__'] = __reduce_ex__\ndel __reduce_ex__\n\n# _RouteClassAttributeToGetattr is used to provide access to the `name`\n# and `value` properties of enum members while keeping some measure of\n# protection from modification, while still allowing for an enumeration\n# to have members named `name` and `value`. This works because enumeration\n# members are not set directly on the enum class -- __getattr__ is\n# used to look them up.\n\ntemp_enum_dict['name'] = name\ndel name\n\ntemp_enum_dict['value'] = value\ndel value\n\nEnum = EnumMeta('Enum', (object, ), temp_enum_dict)\ndel temp_enum_dict\n\n# Enum has now been created\n###########################\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def __cmp__(self, other):\n if type(other) is self.__class__:\n if self is other:\n return 0\n return -1\n return NotImplemented\n raise TypeError(\"unorderable types: %s() and %s()\" % (self.__class__.__name__, other.__class__.__name__))", "metadata": "root.__cmp__", "header": "['module', '___EOS___']", "index": 690 } ]

[ { "span": "except NameError:", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 17 }, { "span": "raise TypeError(\"unorderable types: %s() and %s()\" % (self.__class__.__name__, other.__class__.__name__))", "start_line": 696, "start_column": 8, "end_line": 696, "end_column": 113 } ]

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[ { "content": " def getCovMatrix(self,x=None,z=None,mode=None):\n self.checkInputGetCovMatrix(x,z,mode)\n Q = self.para[0]\n if mode == 'self_test':\n nn, D = z.shape\n else:\n nn, D = x.shape\n assert Q == old_div(len(self.hyp), (1 + 2 * D))\n\n w = np.exp(self.hyp[:Q])\n m = np.exp(np.reshape(self.hyp[Q:Q + Q * D], (D, Q)))\n v = np.exp(2 * np.reshape(self.hyp[Q + Q * D:], (D, Q)))\n\n if mode == 'self_test': # self covariances for the test cases\n d2 = np.zeros((nn, 1, D))\n elif mode == 'train': # compute covariance matix for dataset x\n d2 = np.zeros((nn, nn, D))\n for j in range(D):\n xslice = np.atleast_2d(x[:, j]).T\n d2[:, :, j] = spdist.cdist(xslice, xslice, 'sqeuclidean')\n elif mode == 'cross': # compute covariance between data sets x and z\n d2 = np.zeros((nn, z.shape[0], D))\n for j in range(D):\n xslice = np.atleast_2d(x[:, j]).T\n zslice = np.atleast_2d(z[:, j]).T\n d2[:, :, j] = spdist.cdist(xslice, zslice, 'sqeuclidean')\n d = np.sqrt(d2)\n\n k = lambda d2v_dm: np.exp(-2 * np.pi ** 2 * d2v_dm[0]) * np.cos(2* np.pi * d2v_dm[1]) # evaluation of the covariance\n km = lambda dm: -2 * np.pi * np.tan(2 * np.pi * dm) * dm # remainder when differentiating w.r.t. m\n kv = lambda d2v: -d2v * (2 * np.pi) ** 2 # remainder when differentiating w.r.t. v\n\n A = 0.\n c = 1.\n qq = list(range(Q))\n for q in qq:\n C = w[q] * c\n for j in range(D):\n C = C * k((d2[:, :, j] * v[j, q], d[:, :, j] * m[j, q]))\n A = A + C\n return A", "metadata": "root.SM.getCovMatrix", "header": "['class', 'SM', '(', 'Kernel', ')', ':', '___EOS___']", "index": 520 } ]

[ { "span": "km ", "start_line": 549, "start_column": 8, "end_line": 549, "end_column": 10 }, { "span": "kv ", "start_line": 550, "start_column": 8, "end_line": 550, "end_column": 10 } ]

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[ { "content": " @expose(hide=True)\n def debug_wp(self):\n \"\"\"Start/Stop WordPress debug\"\"\"\n if (self.app.pargs.wp == 'on' and self.app.pargs.site_name):\n wp_config = (\"{0}/{1}/wp-config.php\"\n .format(EEVariables.ee_webroot,\n self.app.pargs.site_name))\n webroot = \"{0}{1}\".format(EEVariables.ee_webroot,\n self.app.pargs.site_name)\n # Check wp-config.php file into htdocs folder\n if not os.path.isfile(wp_config):\n wp_config = (\"{0}/{1}/htdocs/wp-config.php\"\n .format(EEVariables.ee_webroot,\n self.app.pargs.site_name))\n if os.path.isfile(wp_config):\n if not EEShellExec.cmd_exec(self, \"grep \\\"\\'WP_DEBUG\\'\\\" {0} |\"\n \" grep true\".format(wp_config)):\n Log.info(self, \"Starting WordPress debug\")\n open(\"{0}/htdocs/wp-content/debug.log\".format(webroot),\n encoding='utf-8', mode='a').close()\n EEShellExec.cmd_exec(self, \"chown {1}: {0}/htdocs/wp-\"\n \"content/debug.log\"\n \"\".format(webroot,\n EEVariables.ee_php_user))\n EEShellExec.cmd_exec(self, \"sed -i \\\"s/define(\\'WP_DEBUG\\'\"\n \".*/define(\\'WP_DEBUG\\', true);\\\\n\"\n \"define(\\'WP_DEBUG_DISPLAY\\', false);\"\n \"\\\\ndefine(\\'WP_DEBUG_LOG\\', true);\"\n \"\\\\ndefine(\\'SAVEQUERIES\\', true);/\\\"\"\n \" {0}\".format(wp_config))\n EEShellExec.cmd_exec(self, \"cd {0}/htdocs/ && wp\"\n \" plugin --allow-root install \"\n \"developer query-monitor\"\n .format(webroot))\n EEShellExec.cmd_exec(self, \"chown -R {1}: {0}/htdocs/\"\n \"wp-content/plugins\"\n .format(webroot,\n EEVariables.ee_php_user))\n\n self.msg = self.msg + ['{0}{1}/htdocs/wp-content'\n '/debug.log'\n .format(EEVariables.ee_webroot,\n self.app.pargs.site_name)]\n\n else:\n Log.info(self, \"Unable to find wp-config.php for site: {0}\"\n .format(self.app.pargs.site_name))\n\n elif (self.app.pargs.wp == 'off' and self.app.pargs.site_name):\n wp_config = (\"{0}{1}/wp-config.php\"\n .format(EEVariables.ee_webroot,\n self.app.pargs.site_name))\n webroot = \"{0}{1}\".format(EEVariables.ee_webroot,\n self.app.pargs.site_name)\n # Check wp-config.php file into htdocs folder\n if not os.path.isfile(wp_config):\n wp_config = (\"{0}/{1}/htdocs/wp-config.php\"\n .format(EEVariables.ee_webroot,\n self.app.pargs.site_name))\n if os.path.isfile(wp_config):\n if EEShellExec.cmd_exec(self, \"grep \\\"\\'WP_DEBUG\\'\\\" {0} | \"\n \"grep true\".format(wp_config)):\n Log.info(self, \"Disabling WordPress debug\")\n EEShellExec.cmd_exec(self, \"sed -i \\\"s/define(\\'WP_DEBUG\\'\"\n \", true);/define(\\'WP_DEBUG\\', \"\n \"false);/\\\" {0}\".format(wp_config))\n EEShellExec.cmd_exec(self, \"sed -i \\\"/define(\\'\"\n \"WP_DEBUG_DISPLAY\\', false);/d\\\" {0}\"\n .format(wp_config))\n EEShellExec.cmd_exec(self, \"sed -i \\\"/define(\\'\"\n \"WP_DEBUG_LOG\\', true);/d\\\" {0}\"\n .format(wp_config))\n EEShellExec.cmd_exec(self, \"sed -i \\\"/define(\\'\"\n \"SAVEQUERIES\\', \"\n \"true);/d\\\" {0}\".format(wp_config))\n else:\n Log.info(self, \"WordPress debug all already disabled\")\n else:\n Log.error(self, \"Missing argument site name\")", "metadata": "root.EEDebugController.debug_wp", "header": "['class', 'EEDebugController', '(', 'CementBaseController', ')', ':', '___EOS___']", "index": 442 } ]

[ { "span": "webroot ", "start_line": 494, "start_column": 12, "end_line": 494, "end_column": 19 } ]

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[ { "content": " def export(self, ofile, layout='LR'):\n \"\"\"Exports the protocol to a pdf file.\"\"\"\n import textwrap\n #ofile = self._metafolder+'/'+ofile\n ofile = ofile\n f=open(ofile, 'w')\n f.write('digraph G {'+\n 'node [shape=box, style=rounded];'+\n 'rankdir='+\n ('TB' if layout.lower()=='tb' else 'LR')+\n ';')\n for idx, node in enumerate(self._getGraph().getNodes()):\n\n if self._isFileMod(node):\n shape = 'note'\n else:\n shape = 'box'\n\n f.write(str(node))\n docstr = inspect.getdoc(self._modules[node].getValue()) if type(self._modules[node].getValue())==type(inspect.getdoc) else None\n f.write('[shape = ' + shape + ', label = <<table border=\"0\"><tr><td><B>' +\n self._getGraph().getAttrib(node, 'label') +\n '</B></td></tr><tr><td align = \"left\"><font POINT-SIZE=\"10\">'+\n ('-' if docstr == None else textwrap.fill(docstr, 30)).replace('\\n','<br/>') +\n '</font></td></tr></table>>]\\n')\n for node in self._getGraph().keys():\n for onode in self._getGraph()[node]:\n f.write(node + ' -> ' + onode + '\\n')\n f.write('}')\n f.close()\n t=os.system('dot -Tpdf -o' + ofile + '.pdf ' + ofile)\n if t!=0:\n raise NameError('Problems running dot: have you installed it?')", "metadata": "root.protocol.export", "header": "['class', 'protocol', '(', ')', ':', '___EOS___']", "index": 261 }, { "content": " def publish(self, ofile, odir='', layout='LR'):\n \"\"\"Publish the protocol to a HTML file.\"\"\"\n import textwrap\n import os.path\n oname = ofile\n if odir == '':\n odir = 'html'\n if not os.path.exists(odir):\n os.mkdir(odir)\n fullname = os.path.join(odir, ofile)\n #ofile = os.path.join(self._metafolder, ofile)\n f=open(fullname+'.dot', 'w')\n f.write('digraph G {\\n'+\n 'graph [size=\"20, 20\"];\\n' +\n 'node [shape=box, style=rounded];'+\n 'rankdir='+\n ('TB' if layout.lower()=='tb' else 'LR')+\n ';\\n')\n for idx, node in enumerate(self._getGraph().getNodes()):\n f.write(str(node))\n docstr = inspect.getdoc(self._modules[node].getValue()) if type(self._modules[node].getValue())==type(inspect.getdoc) else None\n\n if self._isFileMod(node):\n shape = 'note'\n if self._isAvailable(node):\n content = self._getResource(node).getValue()\n if isinstance(content, tuple) or isinstance(content, list):\n output_line = '\\t\\t<td href=\"'+'(multiple)'+'\"><font POINT-SIZE=\"8\"><u>output</u></font></td>\\n'\n else:\n output_line = '\\t\\t<td href=\"'+content+'\"><font POINT-SIZE=\"8\"><u>output</u></font></td>\\n'\n else:\n output_line = '\\t\\t<td><font POINT-SIZE=\"8\"><u>not built</u></font></td>\\n' \n else:\n output_line='\\t\\t<td></td>\\n'\n shape = 'box'\n\n \n f.write('[shape = ' + shape + ', label = <<table border=\"0\">\\n'+\n '\\t<tr>\\n'+\n '\\t\\t<td colspan=\"2\"><B>' +\n self._getGraph().getAttrib(node, 'label') +\n '</B></td>\\n'+\n '\\t</tr>\\n'+\n '\\t<tr>\\n'+\n '\\t\\t<td colspan=\"2\" align = \"left\"><font POINT-SIZE=\"10\">'+\n ('-' if docstr == None else textwrap.fill(docstr, 30)).replace('\\n','<br/>') +\n '</font></td>\\n'+\n '\\t</tr>\\n' +\n '\\t<tr>\\n'+\n '\\t\\t<td href=\"#'+node+'_details\"><font POINT-SIZE=\"8\"><u>details</u></font></td>\\n'+\n output_line +\n '\\t</tr>\\n'+\n '</table>>]\\n')\n for node in self._getGraph().keys():\n for onode in self._getGraph()[node]:\n f.write(node + ' -> ' + onode + '\\n')\n f.write('}')\n f.close()\n t=os.system('dot -s160 -Tcmapx -o' +\n fullname + '.map -Tgif -o' + fullname + '.gif ' + fullname + '.dot')\n t=os.system('dot -Tpdf -o' + fullname + '.pdf ' + fullname + '.dot')\n\n if t!=0:\n raise NameError('Problems running dot: have you installed it?')\n\n\n\n\n\n html_header = \"\"\"\n<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Strict//EN\" \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd\">\n<html xmlns=\"http://www.w3.org/1999/xhtml\">\n<head>\n<title>\"\"\" + oname + \"\"\"</title>\n<meta http-equiv=\"Content-Language\" content=\"English\" />\n<meta http-equiv=\"Content-Type\" content=\"text/html; charset=UTF-8\" />\n<link rel=\"stylesheet\" type=\"text/css\" href=\"style.css\" media=\"screen\" />\n</head>\n<body>\n\n<div id=\"wrap\">\n<div id=\"top\"></div>\n<div id=\"content\">\n\n<div class=\"header\">\n<a href=\"index.html\"><img src=\"leaf.png\"></a>\n<br><br><br><br><br>\n</div>\t\n\n\"\"\"\n\n html_footer = \"\"\"\n</body>\n</html>\n\"\"\"\n\n\n f = open(fullname+'.html', 'w')\n f.write(html_header)\n f.write('<div class=\"breadcrumbs\"><h1>' + oname + '</h1></div><div class=\"middle\">')\n f.write('<h2>Project Summary</h2>')\n f.write('<div style=\"width: 90%\">')\n if len(self._doc)>0:\n f.write('<b>Description:</b> ' + self._doc + '<br>')\n f.write('<b>Number of Modules:</b> ' + str(len(self._getGraph())) + '<br>')\n f.write('<b>Number of Output modules:</b> ' + str(sum([self._isFileMod(node) for node in self._getGraph().getNodes()]))+'<br>')\n f.write('<b>Total CPU time required:</b> '+ self._readabletime(sum([self._resmap[x]._buildtime for x in self._resmap]))+'<br>')\n f.write('</div><br>')\n f.write('<h2>Protocol map</h2>')\n f.write('<div align = \"center\">')\n f.write('<IMG SRC=\"' + oname + '.gif\" USEMAP=\"#G\" />\\n')\n f.write('</div>')\n map = open(fullname + '.map').read()\n f.write(map)\n\n f.write('<h2>Modules'' details<h2>\\n')\n\n for idx, node in enumerate(self._getGraph().getNodes()):\n f.write('<h3><a name=\"'+str(node)+'_details\">'+str(node)+'</a></h3>\\n')\n docstr = inspect.getdoc(self._modules[node].getValue()) if type(self._modules[node].getValue())==type(inspect.getdoc) else None\n if docstr == None:\n f.write('[documentation not available]')\n else:\n f.write(docstr)\n \n if not self._resmap[node]._timestamp == None:\n tstamp = self._resmap[node]._timestamp\n btime = self._resmap[node]._buildtime\n else:\n tstamp = 'never'\n btime = 'uknknown'\n\n f.write('<br><br>Last build was on ' + tstamp + '.<br>')\n f.write('Time it took: ' + str(self._readabletime(btime)) + '.<br>')\n \n\n f.write('<div class=\"code\"><pre>')\n srccode = inspect.getsource(self._modules[node].getValue()) if type(self._modules[node].getValue())==type(inspect.getdoc) else None\n f.write(srccode.replace('\\n','<br>'))\n f.write('</pre></div>')\n f.write('<hr>')\n\n\n f.write('<div id=\"footer\">')\n f.write('<br><br><i>Automatically generated on ' + time.asctime() + ' using Leaf</i>')\n f.write('</div>')\n f.write(html_footer)\n f.close()\n\n try:\n ## copying external resources\n from pkg_resources import resource_filename\n stylef = resource_filename('pyleaf', 'resources/style.css')\n logof = resource_filename('pyleaf', 'resources/leaf.png')\n\n #stylef = os.path.join(sys.prefix, 'style.css')\n #logof = os.path.join(sys.prefix, 'leaf.png')\n\n import shutil\n shutil.copy(stylef, odir)\n shutil.copy(logof, odir)\n except:\n print('Couldn\\'t copy resource files. HTML file will miss style and logo.')", "metadata": "root.protocol.publish", "header": "['class', 'protocol', '(', ')', ':', '___EOS___']", "index": 300 }, { "content": " def _manageGraphChange(self, newGraph):\n if newGraph==None:\n return\n #checking for change in graph structure\n #a node is flagged as to-be-untrustest if its inputs have changed\n #not untrusted on the fly because of dependancies with untrusts\n #from source code changes\n oldg = self._graphres.getValue()\n untrustme = list()\n# import pdb; pdb.set_trace()\n\n for node in newGraph.getNodes():\n #check wether node is (not) new\n if node in oldg.getNodes():\n #check if node inputs have changed\n innodes1 = newGraph.getInNodes(node)\n innodes2 = oldg.getInNodes(node)\n for inNode in innodes1:\n if not inNode in innodes2:\n dbgstr('Inputs to ' + node + ' have changed, untrusting it.')\n untrustme.append(node)\n #check if node properties have changed \n #cycling through attrib names of node 'node'\n # for attrib in [a[1] for a in newGraph._nodeattribs if a[0]==node]:\n # if newGraph.getAttrib(node, attrib) != oldg.getAttrib(node, attrib):\n # dbgstr('Node attribs of ' + node +\n # ' have changed, untrusting it.')\n # untrustme.append(node) \n\n return untrustme", "metadata": "root.protocol._manageGraphChange", "header": "['class', 'protocol', '(', ')', ':', '___EOS___']", "index": 605 }, { "content": " def _buildResName(self, inode, onode, rawres):\n if onode == None:\n return inode\n else:\n return inode", "metadata": "root.protocol._buildResName", "header": "['class', 'protocol', '(', ')', ':', '___EOS___']", "index": 910 }, { "content": " def _isFileMod(self, node):\n flags = self._getGraph().getAttrib(node, 'LEAF_FLAGS')\n if flags == None:\n return False\n return 'f' in flags or 'F' in flags", "metadata": "root.protocol._isFileMod", "header": "['class', 'protocol', '(', ')', ':', '___EOS___']", "index": 917 }, { "content": " def _ChangeME_resToPath(self, res):\n if self._getGraph().getAttrib(res[0], 'hashout'):\n if res[0] == None: first_part = ''\n else: first_part = res[0]\n if res[1] == None: second_part = ''\n else: second_part = res[1]\n if first_part != '' and second_part !='':\n mid_part = 'TO'\n else: mid_part = ''\n \n fname = first_part + mid_part + second_part + '.dmp'\n else:\n fname = res[0]\n \n dbgstr('Dump file for resource ' + str(res) + ' is ' + self._metafolder + '/' + fname, 2)\n return self._metafolder + '/' + fname", "metadata": "root.protocol._ChangeME_resToPath", "header": "['class', 'protocol', '(', ')', ':', '___EOS___']", "index": 988 } ]

[ { "span": "docstr == None ", "start_line": 284, "start_column": 27, "end_line": 284, "end_column": 41 }, { "span": "docstr == None ", "start_line": 345, "start_column": 27, "end_line": 345, "end_column": 41 }, { "span": "docstr == None:", "start_line": 420, "start_column": 15, "end_line": 420, "end_column": 29 }, { "span": "self._resmap[node]._timestamp == None:", "start_line": 425, "start_column": 19, "end_line": 425, "end_column": 56 }, { "span": "newGraph==None:", "start_line": 606, "start_column": 11, "end_line": 606, "end_column": 25 }, { "span": "onode == None:", "start_line": 911, "start_column": 11, "end_line": 911, "end_column": 24 }, { "span": "flags == None:", "start_line": 919, "start_column": 11, "end_line": 919, "end_column": 24 }, { "span": "res[0] == None:", "start_line": 990, "start_column": 15, "end_line": 990, "end_column": 29 }, { "span": "res[1] == None:", "start_line": 992, "start_column": 15, "end_line": 992, "end_column": 29 } ]

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[ { "content": "'''oscaar v2.0 \n Module for differential photometry\n Developed by Brett Morris, 2011-2013'''\nimport numpy as np\nfrom numpy import linalg as LA\nimport pyfits\nfrom matplotlib import pyplot as plt\nimport matplotlib.cm as cm\nfrom scipy import ndimage, optimize\nfrom time import sleep\nimport shutil\nfrom glob import glob\nfrom re import split\nimport cPickle\nfrom shutil import copy\nimport os\n\n\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def quadraticFit(derivative,ext):\n '''\n Find an extremum in the data and use it and the points on either side, fit\n a quadratic function to the three points, and return the x-position of the \n apex of the best-fit parabola. \n \n Called by oscaar.trackSmooth()\n \n Parameters\n ----------\n derivative : numpy.ndarray\n The first derivative of the series of points, usually calculated by np.diff()\n \n ext : string \n Extremum to look find. May be either \"max\" or \"min\"\n \n Returns\n -------\n extremum : float\n The (non-integer) index where the extremum was found\n \n '''\n rangeOfFit = 1\n lenDer = len(derivative)/2\n if ext == \"max\":\n indExtrema = np.argmax(derivative[:lenDer])\n elif ext == \"min\":\n indExtrema = np.argmin(derivative[lenDer:])+lenDer\n\n fitPart = derivative[indExtrema-rangeOfFit:indExtrema+rangeOfFit+1]\n if len(fitPart) == 3:\n stackPolynomials = np.zeros([3,3])\n for i in range(0,len(fitPart)):\n stackPolynomials[i,:] = [i**2,i,1.0]\n estimatedCoeffs = np.dot(LA.inv(stackPolynomials),fitPart)\n d_fit = -estimatedCoeffs[1]/(2.0*estimatedCoeffs[0]) #d_fit = -b_fit/(2.*a_fit)\n extremum = d_fit+indExtrema-rangeOfFit\n else: \n extremum = indExtrema\n return extremum", "metadata": "root.quadraticFit", "header": "['module', '___EOS___']", "index": 17 }, { "content": "def trackSmooth(image, est_x, est_y, smoothingConst, plottingThings, preCropped=False, zoom=20.0,plots=False):\n '''\n Method for tracking stellar centroids. \n \n Parameters\n ---------- \n image : numpy.ndarray\n FITS image read in by PyFITS\n \n est_x : float\n Inital estimate for the x-centroid of the star\n \n est_y : float\n Inital estimate for the y-centroid of the star\n \n smoothingConstant : float\n Controls the degree to which the raw stellar intensity profile will be smoothed by a Gaussian filter (0 = no smoothing)\n \n preCropped : bool\n If preCropped=False, image is assumed to be a raw image, if preCropped=True, image is assumed to be only the \n portion of the image near the star\n \n zoom : int or float\n How many pixels in each direction away from the estimated centroid to consider when tracking the centroid. Be \n sure to choose a large enough zoom value the stellar centroid in the next exposure will fit within the zoom\n \n plots : bool\n If plots=True, display stellar intensity profile in two axes and the centroid solution\n \n Returns\n ------- \n xCenter : float\n The best-fit x-centroid of the star\n \n yCenter : float\n The best-fit y-centroid of the star\n \n averageRadius : float\n Average radius of the SMOOTHED star in pixels\n \n errorFlag : bool\n Boolean corresponding to whether or not any error occured when running oscaar.trackSmooth(). If an \n error occured, the flag is True; otherwise False.\n \n Core developer: Brett Morris\n Modifications by: Luuk Visser, 2-12-2013\n '''\n '''If you have an interpolated grid as input, small inputs for smoothingConst\n it won't have any effect. Thus it has to be increased by the\n zoom factor you used to sub-pixel interpolate. \n \n np.e seems to give nice smoothing results if frame is already cut out, you can \n set preCropped to True, so the script won't cut a frame out again. '''\n try:\n\t if plots:\n\t [fig,subplotsDimensions,photSubplotsOffset] = plottingThings\n\t if preCropped:\n\t zoom = image.shape[0]/2\n\t est_x, est_y = 0,0\n\t target = image ## Assume image is pre-cropped image of the star\n\t else:\n\t #smoothingConst *= zoom/20 \n\t target = image[est_x-zoom:est_x+zoom,est_y-zoom:est_y+zoom] ## Crop image of just the target star\n\t \n\t #Save original (unsmoothed) data for plotting purposses\n\t if plots:\n\t target_orig = target.copy()\n\t axisA_orig = np.sum(target,axis=0) ## Take the sums of all values in each column,\n\t axisB_orig = np.sum(target,axis=1) ## then repeat for each row\n\t \n\t target = ndimage.gaussian_filter(target, sigma=smoothingConst,order=0)\n\t \n\t ## Sum columns\n\t axisA = np.sum(target,axis=0) ## Take the sums of all values in each column,\n\t axisB = np.sum(target,axis=1) ## then repeat for each row\n\t\n\t axisADeriv = np.diff(axisA) ## Find the differences between each pixel intensity and\n\t axisBDeriv = np.diff(axisB) ## the neighboring pixel (derivative of intensity profile)\n\t\n\t lenaxisADeriv = len(axisADeriv)\n\t lenaxisADeriv_2 = lenaxisADeriv/2\n\t lenaxisBDeriv = len(axisBDeriv)\n\t lenaxisBDeriv_2 = lenaxisBDeriv/2\n\t \n\t derivMinAind = np.where(axisADeriv == min(axisADeriv[lenaxisADeriv_2:lenaxisADeriv]))[0][0] ## Minimum in the derivative\n\t derivMinBind = np.where(axisBDeriv == min(axisBDeriv[lenaxisBDeriv_2:lenaxisBDeriv]))[0][0] ## of the intensity plot\n\t\n\t derivMaxAind = np.where(axisADeriv == max(axisADeriv[0:lenaxisADeriv_2]))[0][0] ## Maximum in the derivative\n\t derivMaxBind = np.where(axisBDeriv == max(axisBDeriv[0:lenaxisBDeriv_2]))[0][0] ## of the intensity plot\n\t\n\t extremumA = quadraticFit(axisADeriv,ext=\"max\")\n\t extremumB = quadraticFit(axisADeriv,ext=\"min\")\n\t extremumC = quadraticFit(axisBDeriv,ext=\"max\")\n\t extremumD = quadraticFit(axisBDeriv,ext=\"min\")\n\t\n\t averageRadius = (abs(derivMinAind-derivMaxAind)+ \\\n\t abs(derivMinBind-derivMaxBind))/4. ## Average diameter / 2\n\t axisAcenter = (extremumA+extremumB)/2.\n\t axisBcenter = (extremumC+extremumD)/2.\n\t \n\t xCenter = est_x-zoom+axisBcenter\n\t yCenter = est_y-zoom+axisAcenter\n\t \n\t if plots:\n\t plt.clf()\n\t #plt.clf(fig)\n\t def format_coord(x, y):\n\t '''Function to also give data value on mouse over with imshow.'''\n\t col = int(x+0.5)\n\t row = int(y+0.5)\n\t try:\n\t return 'x=%1.4f, y=%1.4f, z=%1.4f' % (x, y, target[row,col])\n\t except:\n\t return 'x=%1.4f, y=%1.4f' % (x, y)\n\t \n\t dimx,dimy = target.shape\n\t med = np.median(target)\n\t dsig = np.std(target)\n\t \n\t ax = fig.add_subplot(subplotsDimensions+1)\n\t ax.imshow(target_orig, cmap=cm.gray, interpolation=\"nearest\",vmin = med-0.5*dsig, vmax =med+2*dsig)\n\t ax.set_title('Star Center')\n\t ax.axvline(ymin=0,ymax=1,x=axisAcenter+0.5,color='b',linewidth=2)\n\t ax.axhline(xmin=0,xmax=1,y=axisBcenter+0.5,color='r',linewidth=2)\n\t ax.set_xlim([-.5,dimx-.5])\n\t ax.set_ylim([-.5,dimy-.5])\n\t ax.set_xlabel('X')\n\t ax.set_ylabel('Y')\n\t ax.format_coord = format_coord \n\t \n\t ax2 = fig.add_subplot(subplotsDimensions+2)\n\t ax2.set_title('Smoothed Intensity Profile')\n\t ax2.plot(axisB,'-r')\n\t ax2.plot(axisB_orig,'-r', alpha=0.33)\n\t ax2.axvline(x=extremumC,ymin=0,ymax=1,color='r',linestyle=':',linewidth=1)\n\t ax2.axvline(x=extremumD,ymin=0,ymax=1,color='r',linestyle=':',linewidth=1)\n\t ax2.axvline(x=axisBcenter,ymin=0,ymax=1,color='r',linewidth=2)\n\t ax2.set_xlabel('X')\n\t ax2.set_ylabel('Counts')\n\t\n\t ax3 = fig.add_subplot(subplotsDimensions+3)\n\t ax3.plot(axisA,'-b')\n\t ax3.plot(axisA_orig,'-b', alpha=0.33)\n\t ax3.set_title('Smoothed Intensity Profile')\n\t ax3.axvline(x=extremumA,ymin=0,ymax=1,color='b',linestyle=':',linewidth=1)\n\t ax3.axvline(x=extremumB,ymin=0,ymax=1,color='b',linestyle=':',linewidth=1)\n\t ax3.axvline(x=axisAcenter,ymin=0,ymax=1,color='b',linewidth=2)\n\t ax3.set_xlabel('Y')\n\t ax3.set_ylabel('Counts')\n\t plt.draw()\n\t return [xCenter,yCenter,averageRadius, False]\n except Exception: ## If an error occurs:\n print \"An error has occured in oscaar.trackSmooth(), \\n\\treturning inital (x,y) estimate\"\n return [est_x, est_y, 1.0, True]", "metadata": "root.trackSmooth", "header": "['module', '___EOS___']", "index": 58 } ]

[ { "span": "import pyfits", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 13 }, { "span": "from scipy import ndimage, optimize", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 35 }, { "span": "from time import sleep", "start_line": 9, "start_column": 0, "end_line": 9, "end_column": 22 }, { "span": "import shutil", "start_line": 10, "start_column": 0, "end_line": 10, "end_column": 13 }, { "span": "from glob import glob", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 21 }, { "span": "from re import split", "start_line": 12, "start_column": 0, "end_line": 12, "end_column": 20 }, { "span": "import cPickle", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 14 }, { "span": "from shutil import copy", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 23 }, { "span": "import os", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 9 } ]

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[ { "content": "def main():\n try:\n if user.CURRENT_USER_ID <> 0:\n unprivileged_user_print(user.CURRENT_USER_NAME)\n\n if dns_sniff_gource:\n print(bcolours.OKBLUE + '[INFO] For a live gource feed run this command in parallel with this one:' + bcolours.WARNING + '\\n\\ntail -f ' + random_filename + 'parsed_nmap | tee /dev/stderr | gource -log-format custom -a 1 --file-idle-time 0 -\\n\\n' + bcolours.ENDC)\n\n #This check is to see if anything but gource parser is set\n if (not dns_sniff_gource) or (dns_sniff or sniff_pkts):\n print banner()\n #check if we actually have some info\n if target == None or gateway == None and interface == None:\n options.print_help()\n return\n\n if dns_sniff:\n print(bcolours.OKBLUE + '\\n [Info] Starting DNS Sniffer...\\n' + bcolours.ENDC)\n\n elif sniff_pkts:\n print(bcolours.OKBLUE + '\\n [Info] Starting Sniffer...\\n' + bcolours.ENDC)\n\n if dns_sniff_gource or dns_sniff or sniff_pkts:\n setup_ipv_forwarding()\n print (bcolours.OKBLUE + '[Info] Filter: ' + filter_parser() + bcolours.ENDC)\n while True:\n start_poisen(target, interface, filter_parser())\n else:\n options.print_help()\n\n except KeyboardInterrupt:\n print(bcolours.WARNING + ' [Warning] Stopping...' + bcolours.ENDC)\n sys.exit(3)", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 172 } ]

[ { "span": "target == None ", "start_line": 184, "start_column": 15, "end_line": 184, "end_column": 29 }, { "span": "gateway == None ", "start_line": 184, "start_column": 33, "end_line": 184, "end_column": 48 }, { "span": "interface == None:", "start_line": 184, "start_column": 53, "end_line": 184, "end_column": 70 } ]

[]

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[ { "content": " def back_push(self, item):\n try:\n self.redis.lpush(self.name, self._dumps(item))\n return True\n except:\n return False", "metadata": "root.Deque.back_push", "header": "['class', 'Deque', '(', 'Base', ')', ':', '___EOS___']", "index": 11 }, { "content": " def front_push(self, item):\n try:\n self.redis.rpush(self.name, self._dumps(item))\n return True\n except:\n return False", "metadata": "root.Deque.front_push", "header": "['class', 'Deque', '(', 'Base', ')', ':', '___EOS___']", "index": 18 }, { "content": " def addAll(self, collection=[], back=True):\n assert type(collection) == list\n with self.redis.pipeline() as pipe:\n for item in collection:\n try:\n if back:\n pipe.lpush(self.name, self._dumps(item))\n else:\n pipe.rpush(self.name, self._dumps(item))\n except:\n continue\n pipe.execute()", "metadata": "root.Deque.addAll", "header": "['class', 'Deque', '(', 'Base', ')', ':', '___EOS___']", "index": 25 } ]

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[]

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[ { "content": " def checkKey(self, credentials):\n \"\"\"\n Retrieve files containing authorized keys and check against user\n credentials.\n \"\"\"\n uid, gid = os.geteuid(), os.getegid()\n ouid, ogid = pwd.getpwnam(credentials.username)[2:4]\n for filepath in self.getAuthorizedKeysFiles(credentials):\n if not filepath.exists():\n continue\n try:\n lines = filepath.open()\n except IOError, e:\n if e.errno == errno.EACCES:\n lines = runAsEffectiveUser(ouid, ogid, filepath.open)\n else:\n raise\n for l in lines:\n l2 = l.split()\n if len(l2) < 2:\n continue\n try:\n if base64.decodestring(l2[1]) == credentials.blob:\n return True\n except binascii.Error:\n continue\n return False", "metadata": "root.SSHPublicKeyDatabase.checkKey", "header": "['class', 'SSHPublicKeyDatabase', ':', '___EOS___']", "index": 154 } ]

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[]

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[ { "content": "def getAuth(req):\n if hasattr(req, 'headers_in'):\n # mod_python\n headers_in = req.headers_in\n remote_ip = req.connection.remote_ip\n else:\n # webob\n headers_in = req.headers\n remote_ip = req.remote_addr\n\n if not 'Authorization' in headers_in:\n authToken = ['anonymous', 'anonymous']\n else:\n info = headers_in['Authorization'].split(' ', 1)\n if len(info) != 2 or info[0] != \"Basic\":\n return None\n\n try:\n authString = base64.decodestring(info[1])\n except:\n return None\n\n authToken = authString.split(\":\", 1)\n if len(authToken) != 2:\n # No password\n authToken.append(util.ProtectedString(''))\n else:\n authToken[1] = util.ProtectedString(authToken[1])\n\n try:\n entitlementList = parseEntitlement(\n headers_in.get('X-Conary-Entitlement', ''))\n except:\n return None\n\n authToken.append(entitlementList)\n authToken.append(remote_ip)\n return authToken", "metadata": "root.getAuth", "header": "['module', '___EOS___']", "index": 26 } ]

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[]

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[ { "content": " def test_ticket15316_filter_false(self):\n c1 = SimpleCategory.objects.create(name=\"category1\")\n c2 = SpecialCategory.objects.create(name=\"named category1\",\n special_name=\"special1\")\n c3 = SpecialCategory.objects.create(name=\"named category2\",\n special_name=\"special2\")\n\n ci1 = CategoryItem.objects.create(category=c1)\n ci2 = CategoryItem.objects.create(category=c2)\n ci3 = CategoryItem.objects.create(category=c3)\n\n qs = CategoryItem.objects.filter(category__specialcategory__isnull=False)\n self.assertEqual(qs.count(), 2)\n self.assertQuerysetEqual(qs, [ci2.pk, ci3.pk], lambda x: x.pk, False)", "metadata": "root.Queries4Tests.test_ticket15316_filter_false", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1109 }, { "content": " def test_ticket15316_exclude_false(self):\n c1 = SimpleCategory.objects.create(name=\"category1\")\n c2 = SpecialCategory.objects.create(name=\"named category1\",\n special_name=\"special1\")\n c3 = SpecialCategory.objects.create(name=\"named category2\",\n special_name=\"special2\")\n\n ci1 = CategoryItem.objects.create(category=c1)\n ci2 = CategoryItem.objects.create(category=c2)\n ci3 = CategoryItem.objects.create(category=c3)\n\n qs = CategoryItem.objects.exclude(category__specialcategory__isnull=False)\n self.assertEqual(qs.count(), 1)\n self.assertQuerysetEqual(qs, [ci1.pk], lambda x: x.pk)", "metadata": "root.Queries4Tests.test_ticket15316_exclude_false", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1124 }, { "content": " def test_ticket15316_filter_true(self):\n c1 = SimpleCategory.objects.create(name=\"category1\")\n c2 = SpecialCategory.objects.create(name=\"named category1\",\n special_name=\"special1\")\n c3 = SpecialCategory.objects.create(name=\"named category2\",\n special_name=\"special2\")\n\n ci1 = CategoryItem.objects.create(category=c1)\n ci2 = CategoryItem.objects.create(category=c2)\n ci3 = CategoryItem.objects.create(category=c3)\n\n qs = CategoryItem.objects.filter(category__specialcategory__isnull=True)\n self.assertEqual(qs.count(), 1)\n self.assertQuerysetEqual(qs, [ci1.pk], lambda x: x.pk)", "metadata": "root.Queries4Tests.test_ticket15316_filter_true", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1139 }, { "content": " def test_ticket15316_exclude_true(self):\n c1 = SimpleCategory.objects.create(name=\"category1\")\n c2 = SpecialCategory.objects.create(name=\"named category1\",\n special_name=\"special1\")\n c3 = SpecialCategory.objects.create(name=\"named category2\",\n special_name=\"special2\")\n\n ci1 = CategoryItem.objects.create(category=c1)\n ci2 = CategoryItem.objects.create(category=c2)\n ci3 = CategoryItem.objects.create(category=c3)\n\n qs = CategoryItem.objects.exclude(category__specialcategory__isnull=True)\n self.assertEqual(qs.count(), 2)\n self.assertQuerysetEqual(qs, [ci2.pk, ci3.pk], lambda x: x.pk, False)", "metadata": "root.Queries4Tests.test_ticket15316_exclude_true", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1154 }, { "content": " def test_ticket15316_one2one_filter_false(self):\n c = SimpleCategory.objects.create(name=\"cat\")\n c0 = SimpleCategory.objects.create(name=\"cat0\")\n c1 = SimpleCategory.objects.create(name=\"category1\")\n\n c2 = OneToOneCategory.objects.create(category = c1, new_name=\"new1\")\n c3 = OneToOneCategory.objects.create(category = c0, new_name=\"new2\")\n\n ci1 = CategoryItem.objects.create(category=c)\n ci2 = CategoryItem.objects.create(category=c0)\n ci3 = CategoryItem.objects.create(category=c1)\n\n qs = CategoryItem.objects.filter(category__onetoonecategory__isnull=False)\n self.assertEqual(qs.count(), 2)\n self.assertQuerysetEqual(qs, [ci2.pk, ci3.pk], lambda x: x.pk, False)", "metadata": "root.Queries4Tests.test_ticket15316_one2one_filter_false", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1169 }, { "content": " def test_ticket15316_one2one_exclude_false(self):\n c = SimpleCategory.objects.create(name=\"cat\")\n c0 = SimpleCategory.objects.create(name=\"cat0\")\n c1 = SimpleCategory.objects.create(name=\"category1\")\n\n c2 = OneToOneCategory.objects.create(category = c1, new_name=\"new1\")\n c3 = OneToOneCategory.objects.create(category = c0, new_name=\"new2\")\n\n ci1 = CategoryItem.objects.create(category=c)\n ci2 = CategoryItem.objects.create(category=c0)\n ci3 = CategoryItem.objects.create(category=c1)\n\n qs = CategoryItem.objects.exclude(category__onetoonecategory__isnull=False)\n self.assertEqual(qs.count(), 1)\n self.assertQuerysetEqual(qs, [ci1.pk], lambda x: x.pk)", "metadata": "root.Queries4Tests.test_ticket15316_one2one_exclude_false", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1185 }, { "content": " def test_ticket15316_one2one_filter_true(self):\n c = SimpleCategory.objects.create(name=\"cat\")\n c0 = SimpleCategory.objects.create(name=\"cat0\")\n c1 = SimpleCategory.objects.create(name=\"category1\")\n\n c2 = OneToOneCategory.objects.create(category = c1, new_name=\"new1\")\n c3 = OneToOneCategory.objects.create(category = c0, new_name=\"new2\")\n\n ci1 = CategoryItem.objects.create(category=c)\n ci2 = CategoryItem.objects.create(category=c0)\n ci3 = CategoryItem.objects.create(category=c1)\n\n qs = CategoryItem.objects.filter(category__onetoonecategory__isnull=True)\n self.assertEqual(qs.count(), 1)\n self.assertQuerysetEqual(qs, [ci1.pk], lambda x: x.pk)", "metadata": "root.Queries4Tests.test_ticket15316_one2one_filter_true", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1201 }, { "content": " def test_ticket15316_one2one_exclude_true(self):\n c = SimpleCategory.objects.create(name=\"cat\")\n c0 = SimpleCategory.objects.create(name=\"cat0\")\n c1 = SimpleCategory.objects.create(name=\"category1\")\n\n c2 = OneToOneCategory.objects.create(category = c1, new_name=\"new1\")\n c3 = OneToOneCategory.objects.create(category = c0, new_name=\"new2\")\n\n ci1 = CategoryItem.objects.create(category=c)\n ci2 = CategoryItem.objects.create(category=c0)\n ci3 = CategoryItem.objects.create(category=c1)\n\n qs = CategoryItem.objects.exclude(category__onetoonecategory__isnull=True)\n self.assertEqual(qs.count(), 2)\n self.assertQuerysetEqual(qs, [ci2.pk, ci3.pk], lambda x: x.pk, False)", "metadata": "root.Queries4Tests.test_ticket15316_one2one_exclude_true", "header": "['class', 'Queries4Tests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1217 }, { "content": " def setUp(self):\n generic = NamedCategory.objects.create(name=\"Generic\")\n t1 = Tag.objects.create(name='t1', category=generic)\n t2 = Tag.objects.create(name='t2', parent=t1, category=generic)\n t3 = Tag.objects.create(name='t3', parent=t1)\n t4 = Tag.objects.create(name='t4', parent=t3)\n t5 = Tag.objects.create(name='t5', parent=t3)\n n1 = Note.objects.create(note='n1', misc='foo', id=1)\n ann1 = Annotation.objects.create(name='a1', tag=t1)\n ann1.notes.add(n1)\n ann2 = Annotation.objects.create(name='a2', tag=t4)", "metadata": "root.Queries6Tests.setUp", "header": "['class', 'Queries6Tests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 1439 }, { "content": " def setUp(self):\n n1 = Note.objects.create(note='n1', misc='foo', id=1)", "metadata": "root.RawQueriesTests.setUp", "header": "['class', 'RawQueriesTests', '(', 'TestCase', ')', ':', '___EOS___']", "index": 1548 }, { "content": " def setUp(self):\n generic = NamedCategory.objects.create(name=\"Generic\")\n t1 = Tag.objects.create(name='t1', category=generic)\n t2 = Tag.objects.create(name='t2', parent=t1, category=generic)\n t3 = Tag.objects.create(name='t3', parent=t1)\n t4 = Tag.objects.create(name='t4', parent=t3)\n t5 = Tag.objects.create(name='t5', parent=t3)", "metadata": "root.ConditionalTests.setUp", "header": "['class', 'ConditionalTests', '(', 'BaseQuerysetTest', ')', ':', '___EOS___']", "index": 1832 } ]

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[ { "content": "###############################################################################\n##\n## Copyright (C) 2014-2016, New York University.\n## Copyright (C) 2011-2014, NYU-Poly.\n## Copyright (C) 2006-2011, University of Utah.\n## All rights reserved.\n## Contact: contact@vistrails.org\n##\n## This file is part of VisTrails.\n##\n## \"Redistribution and use in source and binary forms, with or without\n## modification, are permitted provided that the following conditions are met:\n##\n## - Redistributions of source code must retain the above copyright notice,\n## this list of conditions and the following disclaimer.\n## - Redistributions in binary form must reproduce the above copyright\n## notice, this list of conditions and the following disclaimer in the\n## documentation and/or other materials provided with the distribution.\n## - Neither the name of the New York University nor the names of its\n## contributors may be used to endorse or promote products derived from\n## this software without specific prior written permission.\n##\n## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\n## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,\n## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR\n## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR\n## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,\n## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,\n## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;\n## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,\n## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR\n## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF\n## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\"\n##\n###############################################################################\nfrom __future__ import division\n\nfrom vistrails.db.domain import DBWorkflow, DBAdd, DBDelete, DBAction, DBAbstraction, \\\n DBModule, DBConnection, DBPort, DBFunction, DBParameter, DBGroup\nfrom vistrails.db.services.action_chain import getActionChain, getCurrentOperationDict, \\\n getCurrentOperations, simplify_ops\nfrom vistrails.db import VistrailsDBException\n\nimport copy\nimport datetime\nimport getpass\n\nimport unittest\nimport vistrails.core.system\nfrom itertools import chain\n\n\n\n\n\n\n\n\n\n################################################################################\n# Analogy methods\n\n\n\n\n\n\n \n################################################################################\n# Diff methods\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n################################################################################\n\n\n\nif __name__ == '__main__':\n unittest.main()\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def update_id_scope(vistrail):\n if hasattr(vistrail, 'update_id_scope'):\n vistrail.update_id_scope()\n else:\n for action in vistrail.db_actions:\n vistrail.idScope.updateBeginId('action', action.db_id+1)\n if action.db_session is not None:\n vistrail.idScope.updateBeginId('session', action.db_session + 1)\n for operation in action.db_operations:\n vistrail.idScope.updateBeginId('operation', operation.db_id+1)\n if operation.vtType == 'add' or operation.vtType == 'change':\n # update ids of data\n vistrail.idScope.updateBeginId(operation.db_what, \n getNewObjId(operation)+1)\n if operation.db_data is None:\n if operation.vtType == 'change':\n operation.db_objectId = operation.db_oldObjId\n vistrail.db_add_object(operation.db_data)\n for annotation in action.db_annotations:\n vistrail.idScope.updateBeginId('annotation', annotation.db_id+1)", "metadata": "root.update_id_scope", "header": "['module', '___EOS___']", "index": 51 }, { "content": "def materializeWorkflow(vistrail, version):\n # construct path up through tree and perform each action\n if vistrail.db_has_action_with_id(version):\n workflow = DBWorkflow()\n #for action in getActionChain(vistrail, version):\n # oldPerformAction(action, workflow)\n performActions(getActionChain(vistrail, version), \n workflow)\n workflow.db_id = version\n workflow.db_vistrailId = vistrail.db_id\n return workflow\n elif version == 0:\n return DBWorkflow()\n else:\n raise VistrailsDBException(\"invalid workflow version %s\" % version)", "metadata": "root.materializeWorkflow", "header": "['module', '___EOS___']", "index": 72 }, { "content": "def performAction(action, workflow):\n if action.actionType == 'add':\n for operation in action.db_operations:\n workflow.db_add_object(operation.db_data, \n operation.db_parentObjType,\n operation.db_parentObjId)\n elif action.actionType == 'change':\n for operation in action.db_operations:\n workflow.db_change_object(operation.db_data,\n operation.db_parentObjType,\n operation.db_parentObjId)\n elif action.actionType == 'delete':\n for operation in action.operations:\n workflow.db_delete_object(operation.db_objectId,\n operation.db_what,\n operation.db_parentObjType,\n operation.db_parentObjId)\n else:\n msg = \"Unrecognized action type '%s'\" % action.db_actionType\n raise TypeError(msg)", "metadata": "root.performAction", "header": "['module', '___EOS___']", "index": 88 }, { "content": "def performDeletes(deleteOps, workflow):\n for operation in deleteOps:\n workflow.db_delete_object(getOldObjId(operation), operation.db_what,\n operation.db_parentObjType,\n operation.db_parentObjId)", "metadata": "root.performDeletes", "header": "['module', '___EOS___']", "index": 109 }, { "content": "def performAdds(addOps, workflow):\n for operation in addOps:\n# print \"operation %d: %s %s\" % (operation.db_id, operation.vtType,\n# operation.db_what)\n# print \" to: %s %s\" % (operation.db_parentObjType, \n# operation.db_parentObjId)\n workflow.db_add_object(operation.db_data,\n operation.db_parentObjType,\n operation.db_parentObjId)", "metadata": "root.performAdds", "header": "['module', '___EOS___']", "index": 115 }, { "content": "def performActions(actions, workflow):\n # get the current actions and run addObject on the workflow\n # note that delete actions have been removed and\n # a change after an add is effectively an add if the add is discarded\n performAdds(getCurrentOperations(actions), workflow)", "metadata": "root.performActions", "header": "['module', '___EOS___']", "index": 125 }, { "content": "def synchronize(old_vistrail, new_vistrail, current_action_id):\n id_remap = {}\n for action in new_vistrail.db_actions:\n if action.is_new:\n new_action = action.do_copy(True, old_vistrail.idScope, id_remap)\n old_vistrail.db_add_action(new_action)\n else:\n # it must exist in the old vistrail, too\n old_action = old_vistrail.db_actions_id_index[action.db_id]\n # use knowledge that we replace old notes...\n for annotation in action.db_deleted_annotations:\n if old_action.db_has_annotation_with_id(annotation.db_id):\n old_action.db_delete_annotation(annotation)\n else:\n # FIXME conflict!\n # we know that the annotation that was there isn't anymore\n #print 'possible notes conflict'\n if old_action.db_has_annotation_with_key('notes'):\n old_annotation = \\\n old_action.db_get_annotation_by_key('notes')\n old_action.db_delete_annotation(old_annotation)\n else:\n # we don't have to do anything\n pass\n for annotation in action.db_annotations:\n if annotation.is_new:\n new_annotation = annotation.do_copy(True, \n old_vistrail.idScope,\n id_remap)\n old_action.db_add_annotation(new_annotation)\n\n for tag in new_vistrail.db_deleted_tags:\n if old_vistrail.db_has_tag_with_id(tag.db_id):\n old_vistrail.db_delete_tag(tag)\n else:\n # FIXME conflict!\n # we know the tag that was there isn't anymore\n #print 'possible tag conflict'\n # we don't have to do anything here, though\n pass\n\n for tag in new_vistrail.db_tags:\n if tag.is_new:\n new_tag = tag.do_copy(False)\n # remap id\n try:\n new_tag.db_id = id_remap[(DBAction.vtType, new_tag.db_id)]\n except KeyError:\n pass\n try:\n old_tag = old_vistrail.db_tags_name_index[new_tag.db_name]\n except KeyError:\n # FIXME conflict!\n #print \"tag conflict--name already used\"\n old_vistrail.db_delete_tag(old_tag)\n try:\n old_tag = old_vistrail.db_tags_id_index[new_tag.db_id]\n except KeyError:\n #print 'possible tag conflict -- WILL NOT GET HERE!'\n old_vistrail.db_delete_tag(old_tag)\n old_vistrail.db_add_tag(new_tag)\n\n new_action_id = \\\n id_remap.get((DBAction.vtType, current_action_id), current_action_id)\n old_vistrail.db_currentVersion = new_action_id\n return new_action_id", "metadata": "root.synchronize", "header": "['module', '___EOS___']", "index": 131 }, { "content": "def merge(sb, next_sb, app='', interactive = False, tmp_dir = '', next_tmp_dir = ''):\n \"\"\" def merge(sb: SaveBundle, next_sb: SaveBundle, app: str,\n interactive: bool, tmp_dir: str, next_tmp_dir: str) -> None\n Merges two save bundles that has been annotated with checkout\n information from a database.\n All changes from next_sb are appended onto sb. The changes in sb can\n then be uploaded to the database and use as the new working copy.\n first sb is the old one from db, last vt is the new one.\n if interactive is gui.merge_gui.MergeGui then the tmp_dir's must be set.\n \"\"\"\n vt = sb.vistrail\n next_vt = next_sb.vistrail\n merge_gui = interactive\n MergeGUI = merge_gui.MergeGUI if merge_gui else False\n skip = 0\n\n # right now we just replace mashups and subworkflows\n sb.mashups = list(next_sb.mashups)\n sb.abstractions = list(next_sb.abstractions)\n\n id_remap = {}\n\n checkout_key = \"__checkout_version_\"\n action_key = checkout_key + app\n annotation_key = action_key + '_annotationhash'\n action_annotation_key = action_key + '_actionannotationhash'\n\n # find the highest common checkin id\n checkinId = 0\n if len(app) and next_vt.db_has_annotation_with_key(action_key):\n co = next_vt.db_get_annotation_by_key(action_key)\n #print \"found checkin id annotation\"\n checkinId = int(co._db_value)\n else:\n #print \"calculating checkin id\"\n # create unique identifiers for all actions\n actions = []\n actionDict = {}\n for action in vt.db_actions:\n unique = action._db_user + str(action._db_date)\n copy_no = 0\n while (unique + str(copy_no)) in actionDict:\n copy_no += 1\n unique = unique + str(copy_no)\n actions.append(unique)\n actionDict[unique] = action\n actionNexts = []\n actionDictNext = {}\n for action in next_vt.db_actions:\n unique = action._db_user + str(action._db_date)\n copy_no = 0\n while (unique + str(copy_no)) in actionDictNext:\n copy_no += 1\n unique = unique + str(copy_no)\n actionNexts.append(unique)\n actionDictNext[unique] = action\n\n # find last checkin action (only works for centralized syncs)\n while checkinId < len(actions) and checkinId < len(actionNexts) and \\\n actions[checkinId] == actionNexts[checkinId]:\n checkinId += 1\n if checkinId > 0:\n checkinId = actionDict[actions[checkinId-1]].db_id\n #print \"checkinId:\", checkinId\n\n # delete previous checkout annotations in vt\n deletekeys = [action_key,annotation_key,action_annotation_key]\n for key in deletekeys:\n while vt.db_has_annotation_with_key(key):\n a = vt.db_get_annotation_by_key(key)\n vt.db_delete_annotation(a)\n\n # check if someone else have changed the annotations\n mergeAnnotations = True\n if len(app) and next_vt.db_has_annotation_with_key(annotation_key):\n #print \"found annotationhash\"\n co = next_vt.db_get_annotation_by_key(annotation_key)\n old_hash = co._db_value\n mergeAnnotations = (old_hash != vt.hashAnnotations())\n #print \"merge annotations:\", mergeAnnotations\n\n # check if someone else have changed the action annotations\n mergeActionAnnotations = True\n if len(app) and next_vt.db_has_annotation_with_key(action_annotation_key):\n #print \"found actionannotationhash\"\n co = next_vt.db_get_annotation_by_key(action_annotation_key)\n old_hash = co._db_value\n mergeActionAnnotations = (old_hash != vt.hashActionAnnotations())\n #print \"merge actionannotations:\", mergeActionAnnotations\n\n ################## merge actions ######################\n for action in next_vt.db_actions:\n # check for identical actions\n if action._db_id > checkinId:\n new_action = action.do_copy(True, vt.idScope, id_remap)\n vt.db_add_action(new_action)\n\n ################## merge annotations ##################\n if not mergeAnnotations:\n # delete removed annotations\n for annotation in [a for a in vt.db_annotations]:\n if not next_vt.db_has_annotation_with_id(annotation.db_id):\n # delete it\n vt.db_delete_annotation(annotation)\n # add new and update changed annotations\n for annotation in next_vt.db_annotations:\n if not vt.db_has_annotation_with_id(annotation.db_id):\n # new annotation\n new_annotation = annotation.do_copy(True, vt.idScope, id_remap)\n vt.db_add_annotation(new_annotation)\n else:\n old_annotation = vt.db_get_annotation_by_id(annotation.db_id)\n if old_annotation.db_key != annotation.db_key:\n # key changed\n old_annotation.db_key = annotation.db_key\n if old_annotation.db_value != annotation.db_value:\n # value changed\n old_annotation.db_value = annotation.db_value\n else:\n annotations = {}\n # create dict with keys and values\n for annotation in vt.db_annotations:\n if annotation.db_key not in annotations:\n annotations[annotation.db_key] = []\n if annotation.db_value not in annotations[annotation.db_key]:\n annotations[annotation.db_key].append(annotation.db_value)\n # add nonexisting key-value pairs\n for annotation in next_vt.db_annotations:\n if annotation.db_key not in annotations or \\\n annotation.db_value not in annotations[annotation.db_key]:\n new_annotation = annotation.do_copy(True, vt.idScope, id_remap)\n vt.db_add_annotation(new_annotation)\n\n ################# merge action annotations ############\n if not mergeActionAnnotations:\n # delete removed action annotations\n for annotation in [a for a in vt.db_actionAnnotations]:\n if not next_vt.db_has_actionAnnotation_with_id(annotation.db_id):\n # delete it\n vt.db_delete_actionAnnotation(annotation)\n if annotation.db_key == '__thumb__' and len(sb.thumbnails) > 0:\n # remove thumb\n thumb = '/'.join(sb.thumbnails[0].split(\n '/')[:-1]) + '/' + annotation.db_value\n if thumb in sb.thumbnails:\n sb.thumbnails.remove(thumb)\n\n # add new and update changed annotations\n for annotation in next_vt.db_actionAnnotations:\n if not vt.db_has_actionAnnotation_with_id(annotation.db_id):\n # new actionAnnotation\n annotation = annotation.do_copy(True, vt.idScope, id_remap)\n vt.db_add_actionAnnotation(annotation)\n if annotation.db_key == '__thumb__' and \\\n len(next_sb.thumbnails) > 0:\n # add thumb\n thumb = '/'.join(next_sb.thumbnails[0].split(\n '/')[:-1])+'/'+ annotation.db_value\n if thumb not in sb.thumbnails:\n sb.thumbnails.append(thumb)\n else:\n old_annotation = \\\n vt.db_get_actionAnnotation_by_id(annotation.db_id)\n if old_annotation.db_value != annotation.db_value:\n # value changed\n if annotation.db_key == '__thumb__' and \\\n len(sb.thumbnails) > 0:\n # remove thumb\n thumb = '/'.join(sb.thumbnails[0].split(\n '/')[:-1]) + '/' + old_annotation.db_value\n if thumb in sb.thumbnails:\n sb.thumbnails.remove(thumb)\n if annotation.db_key == '__thumb__' and \\\n len(next_sb.thumbnails) > 0:\n # add thumb\n thumb = '/'.join(next_sb.thumbnails[0].split(\n '/')[:-1])+'/'+ annotation.db_value\n if thumb not in sb.thumbnails:\n sb.thumbnails.append(thumb)\n old_annotation.db_value = annotation.db_value\n old_annotation.db_date = annotation.db_date\n old_annotation.db_user = annotation.db_user\n else:\n # construct old action index (oas)\n oas = {}\n for a in vt.db_actionAnnotations:\n if not a.db_action_id in oas:\n oas[a.db_action_id] = {}\n if not a.db_key in oas[a.db_action_id]:\n oas[a.db_action_id][a.db_key] = []\n oas[a.db_action_id][a.db_key].append(a)\n # merge per action\n for new_annotation in next_vt.db_actionAnnotations:\n # keep both upgrades but update action id in new\n if new_annotation.db_key == '__upgrade__':\n value = int(new_annotation.db_value)\n if ('action', value) in id_remap:\n new_annotation.db_value = str(id_remap[('action', value)])\n annotation = new_annotation.do_copy(True, vt.idScope, id_remap)\n vt.db_add_actionAnnotation(annotation)\n elif new_annotation.db_action_id <= checkinId and \\\n new_annotation.db_key in oas[new_annotation.db_action_id]:\n old_action = oas[new_annotation.db_action_id]\n # we have a conflict\n # tags should be merged (the user need to resolve)\n if new_annotation.db_key == '__tag__':\n # there is only one\n old_annotation = old_action[new_annotation.db_key][0]\n if old_annotation.db_value != new_annotation.db_value:\n value = old_annotation.db_value + \" or \" + \\\n new_annotation.db_value\n if interactive:\n if skip == 1:\n pass\n elif skip == 2:\n old_annotation.db_value=new_annotation.db_value\n old_annotation.db_date = new_annotation.db_date\n old_annotation.db_user = new_annotation.db_user\n else:\n v, value = MergeGUI.resolveTags(\n old_annotation, new_annotation, value)\n if v == merge_gui.CHOICE_OTHER_ALL:\n skip = 1\n elif v == merge_gui.CHOICE_OTHER:\n pass\n elif v == merge_gui.CHOICE_RESOLVED:\n #print \"Tag resolved:\", value\n old_annotation.db_value = value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n pass\n elif v == merge_gui.CHOICE_OWN:\n old_annotation.db_value = \\\n new_annotation.db_value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n elif v == merge_gui.CHOICE_OWN_ALL:\n old_annotation.db_value = \\\n new_annotation.db_value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n skip = 2\n else:\n old_annotation.db_value = value\n old_annotation.db_date = new_annotation.db_date\n old_annotation.db_user = new_annotation.db_user\n # notes should be merged (the user need to resolve)\n elif new_annotation.db_key == '__notes__':\n # there is only one\n old_annotation = old_action[new_annotation.db_key][0]\n if new_annotation.db_value != old_annotation.db_value:\n value = (\"#### conflicting versions! ####<br/>\" + \n \"## Other version at %s by %s:%s<br/>\" +\n \"## Your version at %s by %s:%s\") % \\\n (str(old_annotation.db_date), old_annotation.db_user,\n old_annotation.db_value, str(new_annotation.db_date),\n new_annotation.db_user, new_annotation.db_value)\n if interactive:\n if skip == 1:\n pass\n elif skip == 2:\n old_annotation.db_value=new_annotation.db_value\n old_annotation.db_date = new_annotation.db_date\n old_annotation.db_user = new_annotation.db_user\n else:\n v, value = MergeGUI.resolveNotes(\n old_annotation, new_annotation, value)\n if v == merge_gui.CHOICE_OTHER_ALL:\n skip = 1\n elif v == merge_gui.CHOICE_OTHER:\n pass\n elif v == merge_gui.CHOICE_RESOLVED:\n #print \"Note resolved:\", value\n old_annotation.db_value = value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n pass\n elif v == merge_gui.CHOICE_OWN:\n old_annotation.db_value = \\\n new_annotation.db_value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n elif v == merge_gui.CHOICE_OWN_ALL:\n old_annotation.db_value = \\\n new_annotation.db_value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n skip = 2\n else:\n old_annotation.db_value = value\n old_annotation.db_date = new_annotation.db_date\n old_annotation.db_user = new_annotation.db_user\n\n # thumbs should be updated (we loose the other update)\n elif new_annotation.db_key == '__thumb__': \n # there is only one\n old_annotation = old_action[new_annotation.db_key][0]\n if new_annotation.db_value != old_annotation.db_value:\n if interactive:\n if skip == 1:\n pass\n elif skip == 2:\n thumb = '/'.join(sb.thumbnails[0].split(\n '/')[:-1])+'/'+ old_annotation.db_value\n if thumb in sb.thumbnails:\n sb.thumbnails.remove(thumb)\n old_annotation.db_value=new_annotation.db_value\n old_annotation.db_date = new_annotation.db_date\n old_annotation.db_user = new_annotation.db_user\n thumb = '/'.join(next_sb.thumbnails[0].split(\n '/')[:-1])+'/'+ new_annotation.db_value\n if thumb not in sb.thumbnails:\n sb.thumbnails.append(thumb)\n else:\n v = MergeGUI.resolveThumbs(old_annotation,\n new_annotation, tmp_dir, next_tmp_dir)\n if v == merge_gui.CHOICE_OTHER_ALL:\n skip = 1\n elif v == merge_gui.CHOICE_OTHER:\n pass\n elif v in (merge_gui.CHOICE_OWN,\n merge_gui.CHOICE_OWN_ALL):\n thumb = '/'.join(sb.thumbnails[0].split(\n '/')[:-1])+'/'+ old_annotation.db_value\n if thumb in sb.thumbnails:\n sb.thumbnails.remove(thumb)\n old_annotation.db_value = \\\n new_annotation.db_value\n old_annotation.db_date = \\\n new_annotation.db_date\n old_annotation.db_user = \\\n new_annotation.db_user\n thumb='/'.join(next_sb.thumbnails[0].split(\n '/')[:-1])+'/'+ new_annotation.db_value\n if thumb not in sb.thumbnails:\n sb.thumbnails.append(thumb)\n if v == merge_gui.CHOICE_OWN_ALL:\n skip = 2\n else:\n thumb = '/'.join(sb.thumbnails[0].split(\n '/')[:-1])+'/'+ old_annotation.db_value\n if thumb in sb.thumbnails:\n sb.thumbnails.remove(thumb)\n old_annotation.db_value = new_annotation.db_value\n old_annotation.db_date = new_annotation.db_date\n old_annotation.db_user = new_annotation.db_user\n thumb = '/'.join(next_sb.thumbnails[0].split(\n '/')[:-1])+'/'+ new_annotation.db_value\n if thumb not in sb.thumbnails:\n sb.thumbnails.append(thumb)\n elif new_annotation.db_key == '__prune__': # keep old\n pass\n # others should be appended if not already there\n else:\n values = []\n for old_annotation in old_action[new_annotation.db_key]:\n values.append(old_annotation.db_value)\n if new_annotation.db_value not in values:\n annotation = new_annotation.do_copy(True, vt.idScope, \\\n id_remap)\n vt.db_add_actionAnnotation(annotation)\n else:\n annotation = new_annotation.do_copy(True, vt.idScope, id_remap)\n vt.db_add_actionAnnotation(annotation)\n if annotation.db_key == '__thumb__':\n thumb = '/'.join(next_sb.thumbnails[0].split('/')[:-1]) + \\\n '/' + annotation.db_value\n if thumb not in sb.thumbnails:\n sb.thumbnails.append(thumb)\n # make this a valid checked out version\n if len(app):\n vt.update_checkout_version(app)", "metadata": "root.merge", "header": "['module', '___EOS___']", "index": 198 }, { "content": "def find_data(what, id, op_dict):\n try:\n return op_dict[(what, id)].db_data\n except KeyError:\n msg = 'cannot find data (%s, %s)' % (what, id)\n raise KeyError(msg)", "metadata": "root.find_data", "header": "['module', '___EOS___']", "index": 586 }, { "content": "def invertOperations(op_dict, adds, deletes, do_copy=False):\n inverse_ops = [] \n deletes.reverse()\n for op in deletes:\n data = find_data(op.db_what, getOldObjId(op), op_dict)\n if do_copy:\n data = copy.copy(data)\n inv_op = DBAdd(id=-1,\n what=op.db_what,\n objectId=getOldObjId(op),\n parentObjId=op.db_parentObjId,\n parentObjType=op.db_parentObjType,\n data=data\n )\n inverse_ops.append(inv_op)\n adds.reverse()\n for op in adds:\n inv_op = DBDelete(id=-1,\n what=op.db_what,\n objectId=getNewObjId(op),\n parentObjId=op.db_parentObjId,\n parentObjType=op.db_parentObjType,\n )\n inverse_ops.append(inv_op)\n return inverse_ops", "metadata": "root.invertOperations", "header": "['module', '___EOS___']", "index": 593 }, { "content": "def normalOperations(adds, deletes, do_copy=False):\n new_ops = []\n for op in deletes:\n new_op = DBDelete(id=-1,\n what=op.db_what,\n objectId=getOldObjId(op),\n parentObjId=op.db_parentObjId,\n parentObjType=op.db_parentObjType,\n )\n new_ops.append(new_op)\n for op in adds:\n data = op.db_data\n if do_copy:\n data = copy.copy(op.db_data)\n new_op = DBAdd(id=-1,\n what=op.db_what,\n objectId=getNewObjId(op),\n parentObjId=op.db_parentObjId,\n parentObjType=op.db_parentObjType,\n data=data)\n new_ops.append(new_op)\n return new_ops ", "metadata": "root.normalOperations", "header": "['module', '___EOS___']", "index": 619 }, { "content": "def getPathAsAction(vistrail, v1, v2, do_copy=False):\n sharedRoot = getSharedRoot(vistrail, [v1, v2])\n sharedActionChain = getActionChain(vistrail, sharedRoot)\n sharedOperationDict = getCurrentOperationDict(sharedActionChain)\n v1Actions = getActionChain(vistrail, v1, sharedRoot)\n v2Actions = getActionChain(vistrail, v2, sharedRoot)\n (v1AddDict, v1DeleteDict) = getOperationDiff(v1Actions, \n sharedOperationDict)\n (v2AddDict, v2DeleteDict) = getOperationDiff(v2Actions,\n sharedOperationDict)\n \n # need to invert one of them (v1)\n v1Adds = v1AddDict.values()\n v1Adds.sort(key=lambda x: x.db_id) # faster than sort(lambda x, y: cmp(x.db_id, y.db_id))\n v1Deletes = v1DeleteDict.values()\n v1Deletes.sort(key=lambda x: x.db_id) # faster than sort(lambda x, y: cmp(x.db_id, y.db_id))\n v1InverseOps = \\\n invertOperations(sharedOperationDict, v1Adds, v1Deletes, do_copy)\n \n # need to normalize ops of the other (v2)\n v2Adds = v2AddDict.values()\n v2Adds.sort(key=lambda x: x.db_id) # faster than sort(lambda x, y: cmp(x.db_id, y.db_id))\n v2Deletes = v2DeleteDict.values()\n v2Deletes.sort(key=lambda x: x.db_id) # faster than sort(lambda x, y: cmp(x.db_id, y.db_id))\n v2Ops = normalOperations(v2Adds, v2Deletes, do_copy)\n\n allOps = v1InverseOps + v2Ops\n simplifiedOps = simplify_ops(allOps)\n return DBAction(id=-1, \n operations=simplifiedOps,\n )", "metadata": "root.getPathAsAction", "header": "['module', '___EOS___']", "index": 642 }, { "content": "def addAndFixActions(startDict, actions):\n curDict = copy.copy(startDict)\n # print curDict\n for action in actions:\n# print \"fixing action:\", action.db_id\n new_ops = []\n for op in action.db_operations:\n# print \"op:\", op.vtType, op.db_what, getOldObjId(op)\n# print \" \", op.db_parentObjType, op.db_parentObjId\n if op.vtType == 'add':\n if op.db_parentObjId is None or \\\n curDict.has_key((op.db_parentObjType, \n op.db_parentObjId)):\n curDict[(op.db_what, op.db_objectId)] = op\n new_ops.append(op) \n elif op.vtType == 'change':\n if curDict.has_key((op.db_what, op.db_oldObjId)) and \\\n (op.db_parentObjId is None or \\\n curDict.has_key((op.db_parentObjType, \n op.db_parentObjId))):\n del curDict[(op.db_what, op.db_oldObjId)]\n curDict[(op.db_what, op.db_newObjId)] = op\n new_ops.append(op)\n elif op.vtType == 'delete':\n if (op.db_parentObjId is None or\n curDict.has_key((op.db_parentObjType, \n op.db_parentObjId))) and \\\n curDict.has_key((op.db_what, op.db_objectId)):\n del curDict[(op.db_what, op.db_objectId)]\n new_ops.append(op)\n action.db_operations = new_ops\n return curDict", "metadata": "root.addAndFixActions", "header": "['module', '___EOS___']", "index": 674 }, { "content": "def fixActions(vistrail, v, actions):\n startingChain = getActionChain(vistrail, v)\n startingDict = getCurrentOperationDict(startingChain)\n addAndFixActions(startingDict, actions)", "metadata": "root.fixActions", "header": "['module', '___EOS___']", "index": 707 }, { "content": "def getSharedRoot(vistrail, versions):\n # base case is 0\n current = copy.copy(versions)\n while 0 not in current:\n maxId = max(current)\n if current.count(maxId) == len(current):\n return maxId\n else:\n newId = vistrail.db_get_action_by_id(maxId).db_prevId\n for i, v in enumerate(current):\n if v == maxId:\n current[i] = newId\n return 0", "metadata": "root.getSharedRoot", "header": "['module', '___EOS___']", "index": 715 }, { "content": "def getOperationDiff(actions, operationDict):\n addDict = {}\n deleteDict = {}\n for action in actions:\n# print 'action: %d' % action.db_id\n for operation in action.db_operations:\n if operation.vtType == 'add':\n# print \"add: %s %s\" % (operation.db_what, \n# operation.db_objectId)\n addDict[(operation.db_what, \n operation.db_objectId)] = operation\n elif operation.vtType == 'delete':\n# print \"del: %s %s\" % (operation.db_what, \n# operation.db_objectId)\n if operationDict.has_key((operation.db_what,\n operation.db_objectId)):\n deleteDict[(operation.db_what,\n operation.db_objectId)] = operation\n# del operationDict[(operation.db_what, \n# operation.db_objectId)]\n elif addDict.has_key((operation.db_what,\n operation.db_objectId)):\n del addDict[(operation.db_what,\n operation.db_objectId)]\n else:\n pass\n elif operation.vtType == 'change':\n# print \"chg: %s %s %s\" % (operation.db_what, \n# operation.db_oldObjId,\n# operation.db_newObjId)\n if operationDict.has_key((operation.db_what,\n operation.db_oldObjId)):\n deleteDict[(operation.db_what,\n operation.db_oldObjId)] = operation\n# del operationDict[(operation.db_what, \n# operation.db_oldObjId)]\n elif addDict.has_key((operation.db_what,\n operation.db_oldObjId)):\n del addDict[(operation.db_what, operation.db_oldObjId)]\n\n addDict[(operation.db_what,\n operation.db_newObjId)] = operation\n else:\n msg = \"Unrecognized operation '%s'\" % operation.vtType\n raise TypeError(msg)\n\n return (addDict, deleteDict)", "metadata": "root.getOperationDiff", "header": "['module', '___EOS___']", "index": 729 }, { "content": "def updateOperationDict(operationDict, deleteOps, addOps):\n for operation in deleteOps:\n if operationDict.has_key((operation.db_what, getOldObjId(operation))):\n del operationDict[(operation.db_what, getOldObjId(operation))]\n else:\n msg = \"Illegal operation: \" + operation\n for operation in addOps:\n operationDict[(operation.db_what, getNewObjId(operation))] = operation\n return operationDict", "metadata": "root.updateOperationDict", "header": "['module', '___EOS___']", "index": 777 }, { "content": "def getObjects(actions):\n objects = {}\n for action in actions:\n for operation in action.db_operations:\n if not objects.has_key(operation.db_what):\n objects[operation.db_what] = []\n object = copy.copy(operation.db_data)\n objects[operation.db_what].append(object)\n return objects", "metadata": "root.getObjects", "header": "['module', '___EOS___']", "index": 787 }, { "content": "def getVersionDifferences(vistrail, versions):\n sharedRoot = getSharedRoot(vistrail, versions)\n sharedActionChain = getActionChain(vistrail, sharedRoot)\n sharedOperationDict = getCurrentOperationDict(sharedActionChain)\n\n vOnlySorted = []\n for v in versions:\n vActions = getActionChain(vistrail, v, sharedRoot)\n (vAddDict, vDeleteDict) = getOperationDiff(vActions, \n sharedOperationDict)\n vOnlyAdds = vAddDict.values()\n vOnlyAdds.sort(key=lambda x: x.db_id)\n vOnlyDeletes = vDeleteDict.values()\n vOnlyDeletes.sort(key=lambda x: x.db_id)\n vOpDict = copy.copy(sharedOperationDict)\n updateOperationDict(vOpDict, vOnlyDeletes, vOnlyAdds)\n vOps = vOpDict.values()\n vOps.sort(key=lambda x: x.db_id)\n vOnlySorted.append((vOnlyAdds, vOnlyDeletes, vOps))\n\n sharedOps = sharedOperationDict.values()\n sharedOps.sort(key=lambda x: x.db_id)\n\n return (sharedOps, vOnlySorted)", "metadata": "root.getVersionDifferences", "header": "['module', '___EOS___']", "index": 797 }, { "content": "def heuristicModuleMatch(m1, m2):\n \"\"\"takes two modules and returns 1 if exact match,\n 0 if module names match, -1 if no match\n \n \"\"\"\n if m1.db_name == m2.db_name and m1.db_namespace == m2.db_namespace and \\\n m1.db_package == m2.db_package:\n if m1.vtType == 'group':\n # check if we have __desc__ annotation\n m1_desc = None\n m2_desc = None\n if '__desc__' in m1.db_annotations_key_index:\n m1_desc = m1.db_annotations_key_index['__desc__']\n if '__desc__' in m2.db_annotations_key_index:\n m2_desc = m2.db_annotations_key_index['__desc__']\n if not (m1_desc and m2_desc and m1_desc == m2_desc):\n # if desc's don't exactly match, return 0\n # else continue and check functions\n # FIXME: maybe we should check functions here\n return 0\n \n m1_functions = copy.copy(m1.db_get_functions())\n m2_functions = copy.copy(m2.db_get_functions())\n if len(m1_functions) != len(m2_functions):\n return 0\n for f1 in m1_functions[:]:\n match = None\n for f2 in m2_functions:\n isMatch = heuristicFunctionMatch(f1, f2)\n if isMatch == 1:\n match = f2\n break\n if match is not None:\n m1_functions.remove(f1)\n m2_functions.remove(f2)\n else:\n return 0\n \n m1_cparams = copy.copy(m1.db_get_controlParameters())\n m2_cparams = copy.copy(m2.db_get_controlParameters())\n if len(m1_cparams) != len(m2_cparams):\n return 0\n for cp1 in m1_cparams[:]:\n match = None\n for cp2 in m2_cparams:\n isMatch = heuristicControlParameterMatch(cp1, cp2)\n if isMatch == 1:\n match = cp2\n break\n if match is not None:\n m1_cparams.remove(cp1)\n m2_cparams.remove(cp2)\n else:\n return 0\n \n m1_annots = copy.copy(m1.db_get_annotations())\n m2_annots = copy.copy(m2.db_get_annotations())\n if len(m1_annots) != len(m2_annots):\n return 0\n for a1 in m1_annots[:]:\n match = None\n for a2 in m2_annots:\n isMatch = heuristicAnnotationMatch(a1, a2)\n if isMatch == 1:\n match = a2\n break\n if match is not None:\n m1_annots.remove(a1)\n m2_annots.remove(a2)\n else:\n return 0\n\n if len(m1_functions) == len(m2_functions) == \\\n len(m1_cparams ) == len(m2_cparams ) == \\\n len(m1_annots ) == len(m2_annots ) == 0:\n return 1\n else:\n return 0\n return -1", "metadata": "root.heuristicModuleMatch", "header": "['module', '___EOS___']", "index": 822 }, { "content": "def heuristicFunctionMatch(f1, f2):\n \"\"\"takes two functions and returns 1 if exact match,\n 0 if function names match, -1 if no match\n\n \"\"\"\n if f1.db_name == f2.db_name:\n f1_parameters = copy.copy(f1.db_get_parameters())\n f2_parameters = copy.copy(f2.db_get_parameters())\n if len(f1_parameters) != len(f2_parameters):\n return 0\n for p1 in f1_parameters[:]:\n match = None\n for p2 in f2_parameters:\n isMatch = heuristicParameterMatch(p1, p2)\n if isMatch == 1:\n match = p2\n break\n if match is not None:\n f1_parameters.remove(p1)\n f2_parameters.remove(match)\n else:\n return 0\n if len(f1_parameters) == len(f2_parameters) == 0:\n return 1\n else:\n return 0\n return -1", "metadata": "root.heuristicFunctionMatch", "header": "['module', '___EOS___']", "index": 902 }, { "content": "def heuristicParameterMatch(p1, p2):\n \"\"\"takes two parameters and returns 1 if exact match,\n 0 if partial match (types match), -1 if no match\n\n \"\"\"\n if p1.db_type == p2.db_type and p1.db_pos == p2.db_pos:\n if p1.db_val == p2.db_val:\n return 1\n else:\n return 0\n return -1", "metadata": "root.heuristicParameterMatch", "header": "['module', '___EOS___']", "index": 930 }, { "content": "def heuristicControlParameterMatch(cp1, cp2):\n \"\"\"takes two control parameters and returns 1 if exact match,\n 0 if partial match (types match), -1 if no match\n\n \"\"\"\n if cp1.db_name == cp2.db_name:\n if cp1.db_value == cp2.db_value:\n return 1\n else:\n return 0\n return -1", "metadata": "root.heuristicControlParameterMatch", "header": "['module', '___EOS___']", "index": 942 }, { "content": "def heuristicAnnotationMatch(a1, a2):\n \"\"\"takes two annotations and returns 1 if exact match,\n 0 if partial match (types match), -1 if no match\n\n \"\"\"\n if a1.db_key == a2.db_key:\n if a1.db_value == a2.db_value:\n return 1\n else:\n return 0\n return -1", "metadata": "root.heuristicAnnotationMatch", "header": "['module', '___EOS___']", "index": 954 }, { "content": "def heuristicConnectionMatch(c1, c2):\n \"\"\"takes two connections and returns 1 if exact match,\n 0 if partial match (currently undefined), -1 if no match\n\n \"\"\"\n c1_ports = copy.copy(c1.db_get_ports())\n c2_ports = copy.copy(c2.db_get_ports())\n for p1 in c1_ports[:]:\n match = None\n for p2 in c2_ports:\n isMatch = heuristicPortMatch(p1, p2)\n if isMatch == 1:\n match = p2\n break\n elif isMatch == 0:\n match = p2\n if match is not None:\n c1_ports.remove(p1)\n c2_ports.remove(match)\n else:\n return -1\n if len(c1_ports) == len(c2_ports) == 0:\n return 1\n return -1", "metadata": "root.heuristicConnectionMatch", "header": "['module', '___EOS___']", "index": 966 }, { "content": "def heuristicPortMatch(p1, p2):\n \"\"\"takes two ports and returns 1 if exact match,\n 0 if partial match, -1 if no match\n \n \"\"\"\n if p1.db_moduleId == p2.db_moduleId:\n return 1\n elif p1.db_type == p2.db_type and \\\n p1.db_moduleName == p2.db_moduleName and \\\n p1.sig == p2.sig:\n return 0\n return -1", "metadata": "root.heuristicPortMatch", "header": "['module', '___EOS___']", "index": 991 }, { "content": "def function_sig(function):\n return (function.db_name,\n [(param.db_type, param.db_val)\n for param in function.db_get_parameters()])", "metadata": "root.function_sig", "header": "['module', '___EOS___']", "index": 1004 }, { "content": "def getParamChanges(m1, m2, same_vt=True, heuristic_match=True):\n paramChanges = []\n # need to check to see if any children of m1 and m2 are affected\n m1_functions = m1.db_get_functions()\n m2_functions = m2.db_get_functions()\n m1_unmatched = []\n m2_unmatched = []\n if same_vt:\n for f1 in m1_functions:\n # see if m2 has f1, too\n f2 = m2.db_get_function(f1.db_id)\n if f2 is None: \n m1_unmatched.append(f1)\n else:\n # function is same, check if parameters have changed\n if heuristic_match:\n matchValue = heuristicFunctionMatch(f1, f2)\n if matchValue != 1:\n paramChanges.append((function_sig(f1), \n function_sig(f2)))\n else:\n paramChanges.append((function_sig(f1), function_sig(f2)))\n for f2 in m2_functions:\n # see if m1 has f2, too\n if m1.db_get_function(f2.db_id) is None:\n m2_unmatched.append(f2)\n else:\n m1_unmatched.extend(m1_functions)\n m2_unmatched.extend(m2_functions)\n\n# functionMatch = True\n# f1_params = f1.db_get_parameters()\n# f2_params = f2.db_get_parameters()\n# for p1 in f1_params:\n# if f2.db_get_parameter(p1.db_id) is None:\n# functionMatch = False\n# m1_unmatched.append(f1)\n# break\n# for p2 in f2_params:\n# if f1.db_get_parameter(p2.db_id) is None:\n# functionMatch = False\n# m2_unmatched.append(f2)\n# break\n# if functionMatch:\n\n if len(m1_unmatched) + len(m2_unmatched) > 0:\n if heuristic_match and len(m1_unmatched) > 0 and len(m2_unmatched) > 0:\n # do heuristic matches\n for f1 in m1_unmatched[:]:\n matched = False\n matchValue = 0\n for f2 in m2_unmatched:\n matchValue = heuristicFunctionMatch(f1, f2)\n if matchValue == 1:\n # best match so quit\n matched = f1\n break\n elif matchValue == 0:\n # match, but not exact so continue to look\n matched = f1\n if matched:\n if matchValue != 1:\n paramChanges.append((function_sig(f1), \n function_sig(f2)))\n m1_unmatched.remove(f1)\n m2_unmatched.remove(f2)\n\n for f in m1_unmatched:\n paramChanges.append((function_sig(f), (None, None)))\n for f in m2_unmatched:\n paramChanges.append(((None, None), function_sig(f)))\n \n return paramChanges", "metadata": "root.getParamChanges", "header": "['module', '___EOS___']", "index": 1009 }, { "content": "def getCParamChanges(m1, m2, same_vt=True, heuristic_match=True):\n cparamChanges = []\n # need to check to see if any children of m1 and m2 are affected\n m1_cparams = m1.db_get_controlParameters()\n m2_cparams = m2.db_get_controlParameters()\n m1_unmatched = []\n m2_unmatched = []\n if same_vt:\n for cp1 in m1_cparams:\n # see if m2 has f1, too\n cp2 = m2.db_get_controlParameter(cp1.db_id)\n if cp2 is None: \n m1_unmatched.append(cp1)\n else:\n # cparam is same, check if it has changed\n if heuristic_match:\n matchValue = heuristicControlParameterMatch(cp1, cp2)\n if matchValue != 1:\n cparamChanges.append(((cp1.db_name,cp1.db_value), \n (cp2.db_name,cp2.db_value)))\n else:\n cparamChanges.append(((cp1.db_name,cp1.db_value), \n (cp2.db_name,cp2.db_value)))\n for cp2 in m2_cparams:\n # see if m1 has f2, too\n if m1.db_get_controlParameter(cp2.db_id) is None:\n m2_unmatched.append(cp2)\n else:\n m1_unmatched.extend(m1_cparams)\n m2_unmatched.extend(m2_cparams)\n\n# functionMatch = True\n# f1_params = f1.db_get_parameters()\n# f2_params = f2.db_get_parameters()\n# for p1 in f1_params:\n# if f2.db_get_parameter(p1.db_id) is None:\n# functionMatch = False\n# m1_unmatched.append(f1)\n# break\n# for p2 in f2_params:\n# if f1.db_get_parameter(p2.db_id) is None:\n# functionMatch = False\n# m2_unmatched.append(f2)\n# break\n# if functionMatch:\n\n if len(m1_unmatched) + len(m2_unmatched) > 0:\n if heuristic_match and len(m1_unmatched) > 0 and len(m2_unmatched) > 0:\n # do heuristic matches\n for cp1 in m1_unmatched[:]:\n matched = False\n matchValue = 0\n for cp2 in m2_unmatched:\n matchValue = heuristicControlParameterMatch(cp1, cp2)\n if matchValue == 1:\n # best match so quit\n matched = cp1\n break\n elif matchValue == 0:\n # match, but not exact so continue to look\n matched = cp1\n if matched:\n if matchValue != 1:\n cparamChanges.append(((cp1.db_name,cp1.db_value), \n (cp2.db_name,cp2.db_value)))\n m1_unmatched.remove(cp1)\n m2_unmatched.remove(cp2)\n\n for cp in m1_unmatched:\n cparamChanges.append(((cp.db_name,cp.db_value), (None, None)))\n for cp in m2_unmatched:\n cparamChanges.append(((None, None), (cp.db_name,cp.db_value)))\n return cparamChanges", "metadata": "root.getCParamChanges", "header": "['module', '___EOS___']", "index": 1083 }, { "content": "def getAnnotationChanges(m1, m2, same_vt=True, heuristic_match=True):\n annotChanges = []\n # need to check to see if any children of m1 and m2 are affected\n m1_annots = m1.db_get_annotations()\n m2_annots = m2.db_get_annotations()\n m1_unmatched = []\n m2_unmatched = []\n if same_vt:\n for a1 in m1_annots:\n # see if m2 has f1, too\n a2 = m2.db_get_annotation(a1.db_id)\n if a2 is None: \n m1_unmatched.append(a1)\n else:\n # cparam is same, check if it has changed\n if heuristic_match:\n matchValue = heuristicAnnotationMatch(a1, a2)\n if matchValue != 1:\n annotChanges.append(((a1.db_key,a1.db_value), \n (a2.db_key,a2.db_value)))\n else:\n annotChanges.append(((a1.db_key,a1.db_value), \n (a2.db_key,a2.db_value)))\n for a2 in m2_annots:\n # see if m1 has f2, too\n if m1.db_get_annotation(a2.db_id) is None:\n m2_unmatched.append(a2)\n else:\n m1_unmatched.extend(m1_annots)\n m2_unmatched.extend(m2_annots)\n\n# functionMatch = True\n# f1_params = f1.db_get_parameters()\n# f2_params = f2.db_get_parameters()\n# for p1 in f1_params:\n# if f2.db_get_parameter(p1.db_id) is None:\n# functionMatch = False\n# m1_unmatched.append(f1)\n# break\n# for p2 in f2_params:\n# if f1.db_get_parameter(p2.db_id) is None:\n# functionMatch = False\n# m2_unmatched.append(f2)\n# break\n# if functionMatch:\n\n if len(m1_unmatched) + len(m2_unmatched) > 0:\n if heuristic_match and len(m1_unmatched) > 0 and len(m2_unmatched) > 0:\n # do heuristic matches\n for a1 in m1_unmatched[:]:\n matched = False\n matchValue = 0\n for a2 in m2_unmatched:\n matchValue = heuristicAnnotationMatch(a1, a2)\n if matchValue == 1:\n # best match so quit\n matched = a1\n break\n elif matchValue == 0:\n # match, but not exact so continue to look\n matched = a1\n if matched:\n if matchValue != 1:\n annotChanges.append(((a1.db_key,a1.db_value), \n (a2.db_key,a2.db_value)))\n m1_unmatched.remove(a1)\n m2_unmatched.remove(a2)\n\n for cp in m1_unmatched:\n annotChanges.append(((cp.db_key,cp.db_value), (None, None)))\n for cp in m2_unmatched:\n annotChanges.append(((None, None), (cp.db_key,cp.db_value)))\n \n return annotChanges", "metadata": "root.getAnnotationChanges", "header": "['module', '___EOS___']", "index": 1157 }, { "content": "def getOldObjId(operation):\n if operation.vtType == 'change':\n return operation.db_oldObjId\n return operation.db_objectId", "metadata": "root.getOldObjId", "header": "['module', '___EOS___']", "index": 1232 }, { "content": "def getNewObjId(operation):\n if operation.vtType == 'change':\n return operation.db_newObjId\n return operation.db_objectId", "metadata": "root.getNewObjId", "header": "['module', '___EOS___']", "index": 1237 }, { "content": "def setOldObjId(operation, id):\n if operation.vtType == 'change':\n operation.db_oldObjId = id\n else:\n operation.db_objectId = id", "metadata": "root.setOldObjId", "header": "['module', '___EOS___']", "index": 1242 }, { "content": "def setNewObjId(operation, id):\n if operation.vtType == 'change':\n operation.db_newObjId = id\n else:\n operation.db_objectId = id", "metadata": "root.setNewObjId", "header": "['module', '___EOS___']", "index": 1248 }, { "content": "def getWorkflowDiffCommon(vistrail, v1, v2, heuristic_match=True):\n (sharedOps, vOnlyOps) = \\\n getVersionDifferences(vistrail, [v1, v2])\n\n sharedWorkflow = DBWorkflow()\n performAdds(sharedOps, sharedWorkflow)\n\n # FIXME better to do additional ops (and do deletes) or do this?\n v1Workflow = DBWorkflow()\n v1Ops = vOnlyOps[0][2]\n performAdds(v1Ops, v1Workflow)\n\n v2Workflow = DBWorkflow()\n v2Ops = vOnlyOps[1][2]\n performAdds(v2Ops, v2Workflow)\n\n # FIXME connections do not check their ports\n sharedModuleIds = []\n sharedConnectionIds = []\n sharedFunctionIds = {}\n sharedCParameterIds = {}\n sharedAnnotationIds = {}\n for op in sharedOps:\n if op.what == 'module' or op.what == 'abstraction' or \\\n op.what == 'group':\n sharedModuleIds.append(getNewObjId(op))\n elif op.what == 'connection':\n sharedConnectionIds.append(getNewObjId(op))\n elif op.what == 'function':\n sharedFunctionIds[getNewObjId(op)] = op.db_parentObjId\n elif op.what == 'controlParameter':\n sharedCParameterIds[getNewObjId(op)] = op.db_parentObjId\n elif op.what == 'annotation':\n sharedAnnotationIds[getNewObjId(op)] = op.db_parentObjId\n \n vOnlyModules = []\n vOnlyConnections = []\n paramChgModules = {}\n cparamChgModules = {}\n annotChgModules = {}\n for (vAdds, vDeletes, _) in vOnlyOps:\n moduleDeleteIds = []\n connectionDeleteIds = []\n for op in vDeletes:\n if op.what == 'module' or op.what == 'abstraction' or \\\n op.what == 'group':\n moduleDeleteIds.append(getOldObjId(op))\n if getOldObjId(op) in sharedModuleIds:\n sharedModuleIds.remove(getOldObjId(op))\n if paramChgModules.has_key(getOldObjId(op)):\n del paramChgModules[getOldObjId(op)]\n if cparamChgModules.has_key(getOldObjId(op)):\n del cparamChgModules[getOldObjId(op)]\n if annotChgModules.has_key(getOldObjId(op)):\n del annotChgModules[getOldObjId(op)]\n elif op.what == 'function' and \\\n (op.db_parentObjType == 'module' or \n op.db_parentObjType == 'abstraction' or \n op.db_parentObjType == 'group') and \\\n op.db_parentObjId in sharedModuleIds:\n # have a function change\n paramChgModules[op.db_parentObjId] = None\n sharedModuleIds.remove(op.db_parentObjId)\n elif op.what == 'parameter' and op.db_parentObjType == 'function' \\\n and sharedFunctionIds.has_key(op.db_parentObjId):\n # have a parameter change\n moduleId = sharedFunctionIds[op.db_parentObjId]\n if moduleId in sharedModuleIds:\n paramChgModules[moduleId] = None\n sharedModuleIds.remove(moduleId)\n elif op.what == 'controlParameter' and \\\n (op.db_parentObjType == 'module' or \n op.db_parentObjType == 'abstraction' or \n op.db_parentObjType == 'group') and \\\n op.db_parentObjId in sharedCParameterIds and \\\n op.db_parentObjId in sharedModuleIds:\n # have a control parameter change\n cparamChgModules[op.db_parentObjId] = None\n sharedModuleIds.remove(op.db_parentObjId)\n elif op.what == 'annotation' and \\\n (op.db_parentObjType == 'module' or \n op.db_parentObjType == 'abstraction' or \n op.db_parentObjType == 'group') and \\\n op.db_parentObjId in sharedAnnotationIds and \\\n op.db_parentObjId in sharedModuleIds:\n # have an annotation change\n annotChgModules[op.db_parentObjId] = None\n sharedModuleIds.remove(op.db_parentObjId)\n elif op.what == 'connection':\n connectionDeleteIds.append(getOldObjId(op))\n if getOldObjId(op) in sharedConnectionIds:\n sharedConnectionIds.remove(getOldObjId(op))\n\n moduleAddIds = []\n connectionAddIds = []\n for op in vAdds:\n if op.what == 'module' or op.what == 'abstraction' or \\\n op.what == 'group':\n moduleAddIds.append(getNewObjId(op))\n elif (op.what == 'function' and\n (op.db_parentObjType == 'module' or\n op.db_parentObjType == 'abstraction' or\n op.db_parentObjType == 'group') and\n op.db_parentObjId in sharedModuleIds):\n # have a function change\n paramChgModules[op.db_parentObjId] = None\n sharedModuleIds.remove(op.db_parentObjId)\n elif op.what == 'parameter' and op.db_parentObjType == 'function' \\\n and sharedFunctionIds.has_key(op.db_parentObjId):\n # have a parameter change\n moduleId = sharedFunctionIds[op.db_parentObjId]\n if moduleId in sharedModuleIds:\n paramChgModules[moduleId] = None\n sharedModuleIds.remove(moduleId)\n elif (op.what == 'controlParameter' and\n (op.db_parentObjType == 'module' or\n op.db_parentObjType == 'abstraction' or\n op.db_parentObjType == 'group') and\n op.db_parentObjId in sharedCParameterIds and\n op.db_parentObjId in sharedModuleIds):\n # have a control parameter change\n cparamChgModules[op.db_parentObjId] = None\n sharedModuleIds.remove(op.db_parentObjId)\n elif (op.what == 'annotation' and\n (op.db_parentObjType == 'module' or\n op.db_parentObjType == 'abstraction' or\n op.db_parentObjType == 'group') and\n op.db_parentObjId in sharedAnnotationIds and\n op.db_parentObjId in sharedModuleIds):\n # have an annotation change\n annotChgModules[op.db_parentObjId] = None\n sharedModuleIds.remove(op.db_parentObjId)\n elif op.what == 'connection':\n connectionAddIds.append(getOldObjId(op))\n\n vOnlyModules.append((moduleAddIds, moduleDeleteIds))\n vOnlyConnections.append((connectionAddIds, connectionDeleteIds))\n\n sharedModulePairs = [(id, id) for id in sharedModuleIds]\n v1Only = vOnlyModules[0][0]\n v2Only = vOnlyModules[1][0]\n for id in vOnlyModules[1][1]:\n if id not in vOnlyModules[0][1]:\n v1Only.append(id)\n for id in vOnlyModules[0][1]:\n if id not in vOnlyModules[1][1]:\n v2Only.append(id)\n\n sharedConnectionPairs = [(id, id) for id in sharedConnectionIds]\n c1Only = vOnlyConnections[0][0]\n c2Only = vOnlyConnections[1][0]\n for id in vOnlyConnections[1][1]:\n if id not in vOnlyConnections[0][1]:\n c1Only.append(id)\n for id in vOnlyConnections[0][1]:\n if id not in vOnlyConnections[1][1]:\n c2Only.append(id)\n\n paramChgModulePairs = [(id, id) for id in paramChgModules.keys()]\n cparamChgModulePairs = [(id, id) for id in cparamChgModules.keys()]\n annotChgModulePairs = [(id, id) for id in annotChgModules.keys()]\n # print \"^^^^ SHARED MODULE PAIRS:\", sharedModulePairs\n c1Only, c2Only, heuristicConnectionPairs = [], [], []\n \n if heuristic_match:\n (heuristicModulePairs, heuristicConnectionPairs, v1Only, v2Only, \\\n c1Only, c2Only) = do_heuristic_diff(v1Workflow, v2Workflow, \\\n v1Only, v2Only, \\\n c1Only, c2Only)\n paramChgModulePairs.extend(heuristicModulePairs)\n cparamChgModulePairs.extend(heuristicModulePairs)\n annotChgModulePairs.extend(heuristicModulePairs)\n allChgModulePairs = list(set(chain(paramChgModulePairs,\n cparamChgModulePairs,\n annotChgModulePairs)))\n\n (heuristicModulePairs, paramChanges, cparam_changes, annot_changes) = \\\n check_params_diff(v1Workflow, v2Workflow, allChgModulePairs, \n True, heuristic_match)\n\n return (v1Workflow, v2Workflow, \n sharedModulePairs, heuristicModulePairs, v1Only, v2Only, \n paramChanges, cparam_changes, annot_changes,\n sharedConnectionPairs, heuristicConnectionPairs, \n c1Only, c2Only)", "metadata": "root.getWorkflowDiffCommon", "header": "['module', '___EOS___']", "index": 1254 }, { "content": "def do_heuristic_diff(v1Workflow, v2Workflow, v1_modules, v2_modules, \n v1_connections, v2_connections): \n # add heuristic matches\n heuristicModulePairs = []\n heuristicConnectionPairs = []\n \n v1Only = copy.copy(v1_modules)\n v2Only = copy.copy(v2_modules)\n c1Only = copy.copy(v1_connections)\n c2Only = copy.copy(v2_connections)\n\n # we now check all heuristic pairs for parameter changes\n # match modules\n # for (m1_id, m2_id) in paramChgModulePairs[:]:\n # m1 = v1Workflow.db_get_module(m1_id)\n # m2 = v2Workflow.db_get_module(m2_id)\n # if heuristicModuleMatch(m1, m2) == 1:\n # # paramChgModulePairs.remove((m1_id, m2_id))\n # # heuristicModulePairs.append((m1_id, m2_id))\n # pass\n\n for m1_id in v1Only[:]:\n m1 = v1Workflow.db_get_module(m1_id)\n match = None\n for m2_id in v2Only:\n m2 = v2Workflow.db_get_module(m2_id)\n isMatch = heuristicModuleMatch(m1, m2)\n if isMatch == 1:\n match = (m1_id, m2_id)\n break\n elif isMatch == 0:\n match = (m1_id, m2_id)\n if match is not None:\n v1Only.remove(match[0])\n v2Only.remove(match[1])\n # we now check all heuristic pairs for parameter changes\n heuristicModulePairs.append(match)\n\n # match connections\n for c1_id in c1Only[:]:\n c1 = v1Workflow.db_get_connection(c1_id)\n match = None\n for c2_id in c2Only:\n c2 = v2Workflow.db_get_connection(c2_id)\n isMatch = heuristicConnectionMatch(c1, c2)\n if isMatch == 1:\n match = (c1_id, c2_id)\n break\n elif isMatch == 0:\n match = (c1_id, c2_id)\n if match is not None:\n # don't have port changes yet\n c1Only.remove(match[0])\n c2Only.remove(match[1])\n heuristicConnectionPairs.append(match)\n\n return (heuristicModulePairs, heuristicConnectionPairs, v1Only, v2Only,\n c1Only, c2Only)", "metadata": "root.do_heuristic_diff", "header": "['module', '___EOS___']", "index": 1440 }, { "content": "def check_params_diff(v1Workflow, v2Workflow, paramChgModulePairs, \n same_vt=True, heuristic_match=True):\n matched = []\n paramChanges = []\n cparamChanges = []\n annotChanges = []\n # print \"^^^^ PARAM CHG PAIRS:\", paramChgModulePairs\n for (m1_id, m2_id) in paramChgModulePairs:\n m1 = v1Workflow.db_get_module(m1_id)\n m2 = v2Workflow.db_get_module(m2_id)\n moduleParamChanges = getParamChanges(m1, m2, same_vt, heuristic_match)\n if len(moduleParamChanges) > 0:\n paramChanges.append(((m1_id, m2_id), moduleParamChanges))\n moduleCParamChanges = getCParamChanges(m1, m2, same_vt,\n heuristic_match)\n if len(moduleCParamChanges) > 0:\n cparamChanges.append(((m1_id, m2_id), moduleCParamChanges))\n moduleAnnotChanges = getAnnotationChanges(m1, m2, same_vt,\n heuristic_match)\n if len(moduleAnnotChanges) > 0:\n annotChanges.append(((m1_id, m2_id), moduleAnnotChanges))\n if len(moduleParamChanges) == len(moduleCParamChanges) == \\\n len(moduleAnnotChanges) == 0:\n # heuristicModulePairs.append((m1_id, m2_id))\n matched.append((m1_id, m2_id))\n return (matched, paramChanges, cparamChanges, annotChanges)", "metadata": "root.check_params_diff", "header": "['module', '___EOS___']", "index": 1499 }, { "content": "def getWorkflowDiff(vt_pair_1, vt_pair_2, heuristic_match=True):\n (vistrail_1, v_1) = vt_pair_1\n (vistrail_2, v_2) = vt_pair_2\n \n if vistrail_1 == vistrail_2:\n return getWorkflowDiffCommon(vistrail_1, v_1, v_2, heuristic_match)\n \n workflow_1 = materializeWorkflow(vistrail_1, v_1)\n workflow_2 = materializeWorkflow(vistrail_2, v_2)\n modules_1 = workflow_1.db_modules_id_index.keys()\n modules_2 = workflow_2.db_modules_id_index.keys()\n conns_1 = workflow_1.db_connections_id_index.keys()\n conns_2 = workflow_2.db_connections_id_index.keys()\n\n if heuristic_match:\n (m_matches, c_matches, modules_1, modules_2, conns_1, conns_2) = \\\n do_heuristic_diff(workflow_1, workflow_2, modules_1, modules_2, \\\n conns_1, conns_2)\n (m_matches, param_changes, cparam_changes, annot_changes) = \\\n check_params_diff(workflow_1, workflow_2,\n m_matches, False,\n heuristic_match)\n return (workflow_1, workflow_2, [], m_matches, modules_1, modules_2,\n param_changes, cparam_changes, annot_changes, [], c_matches, conns_1, conns_2)\n\n return (workflow_1, workflow_2, [], [], modules_1, modules_2, [], [], [], [], [], \n conns_1, conns_2)", "metadata": "root.getWorkflowDiff", "header": "['module', '___EOS___']", "index": 1526 }, { "content": "class TestDBVistrailService(unittest.TestCase):\n\n", "metadata": "root.TestDBVistrailService", "header": "['module', '___EOS___']", "index": 1557 }, { "content": " def test_parameter_heuristic(self):\n from vistrails.core.vistrail.module_param import ModuleParam\n \n param1 = ModuleParam(id=0, pos=0, type='String', val='abc')\n param2 = ModuleParam(id=1, pos=0, type='String', val='abc')\n param3 = ModuleParam(id=2, pos=1, type='Float', val='1.0')\n param4 = ModuleParam(id=3, pos=0, type='String', val='def')\n param5 = ModuleParam(id=4, pos=1, type='String', val='abc')\n\n # test basic equality\n assert heuristicParameterMatch(param1, param2) == 1\n # test basic inequality\n assert heuristicParameterMatch(param1, param3) == -1\n # test partial match\n assert heuristicParameterMatch(param1, param4) == 0\n # test position inequality\n assert heuristicParameterMatch(param1, param5) == -1", "metadata": "root.TestDBVistrailService.test_parameter_heuristic", "header": "['class', 'TestDBVistrailService', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 1558 }, { "content": " def test_function_heuristic(self):\n from vistrails.core.vistrail.module_param import ModuleParam\n from vistrails.core.vistrail.module_function import ModuleFunction\n \n param1 = ModuleParam(id=0, pos=0, type='String', val='abc')\n param2 = ModuleParam(id=1, pos=1, type='Float', val='1.0')\n param3 = ModuleParam(id=2, pos=0, type='String', val='abc')\n param4 = ModuleParam(id=3, pos=1, type='Float', val='1.0')\n param5 = ModuleParam(id=4, pos=0, type='String', val='abc')\n param6 = ModuleParam(id=5, pos=1, type='Float', val='2.0')\n\n function1 = ModuleFunction(name='f1', parameters=[param1, param2])\n function2 = ModuleFunction(name='f1', parameters=[param3, param4])\n function3 = ModuleFunction(name='f1', parameters=[param5, param6])\n function4 = ModuleFunction(name='f2', parameters=[param1, param2])\n function5 = ModuleFunction(name='f1', parameters=[param1])\n\n # test basic equality\n assert heuristicFunctionMatch(function1, function2) == 1\n # test partial match\n assert heuristicFunctionMatch(function1, function3) == 0\n # test basic inequality\n assert heuristicFunctionMatch(function1, function4) == -1\n # test length inequality\n assert heuristicFunctionMatch(function1, function5) == 0", "metadata": "root.TestDBVistrailService.test_function_heuristic", "header": "['class', 'TestDBVistrailService', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 1576 }, { "content": " def test_module_heuristic(self):\n from vistrails.core.vistrail.module_param import ModuleParam\n from vistrails.core.vistrail.module_function import ModuleFunction\n from vistrails.core.vistrail.module import Module\n\n param1 = ModuleParam(id=0, pos=0, type='String', val='abc')\n param2 = ModuleParam(id=1, pos=1, type='Float', val='1.0')\n param3 = ModuleParam(id=2, pos=0, type='String', val='abc')\n param4 = ModuleParam(id=3, pos=1, type='Float', val='1.0')\n param5 = ModuleParam(id=4, pos=0, type='Integer', val='2')\n param6 = ModuleParam(id=5, pos=0, type='Integer', val='2')\n\n function1 = ModuleFunction(name='f1', parameters=[param1, param2])\n function2 = ModuleFunction(name='f1', parameters=[param3, param4])\n function3 = ModuleFunction(name='f2', parameters=[param5])\n function4 = ModuleFunction(name='f2', parameters=[param6])\n function5 = ModuleFunction(name='f1', parameters=[param2, param4])\n function6 = ModuleFunction(name='f2', parameters=[param5])\n\n module1 = Module(name='m1', functions=[function1, function3])\n module2 = Module(name='m1', functions=[function2, function4])\n module3 = Module(name='m2', functions=[function1, function2])\n module4 = Module(name='m1', functions=[function5])\n module5 = Module(name='m1', functions=[function5, function6])\n\n # test basic equality\n assert heuristicModuleMatch(module1, module2) == 1\n # test basic inequality\n assert heuristicModuleMatch(module1, module3) == -1\n # test length inequality\n assert heuristicModuleMatch(module1, module4) == 0\n # test parameter change inequality\n assert heuristicModuleMatch(module1, module5) == 0", "metadata": "root.TestDBVistrailService.test_module_heuristic", "header": "['class', 'TestDBVistrailService', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 1602 } ]

[ { "span": "from vistrails.db.domain import DBWorkflow, DBAdd, DBDelete, DBAction, DBAbstraction, \\\n DBModule, DBConnection, DBPort, DBFunction, DBParameter, DBGroup", "start_line": 37, "start_column": 0, "end_line": 38, "end_column": 68 }, { "span": "import datetime", "start_line": 44, "start_column": 0, "end_line": 44, "end_column": 15 }, { "span": "import getpass", "start_line": 45, "start_column": 0, "end_line": 45, "end_column": 14 }, { "span": "import vistrails.core.system", "start_line": 48, "start_column": 0, "end_line": 48, "end_column": 28 } ]

[]

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[ { "content": " def test_lock(self):\n \"\"\"\n Test that (lazy) compiling from several threads at once doesn't\n produce errors (see issue #908).\n \"\"\"\n errors = []\n\n @jit\n def foo(x):\n return x + 1\n\n def wrapper():\n try:\n self.assertEqual(foo(1), 2)\n except BaseException as e:\n errors.append(e)\n\n threads = [threading.Thread(target=wrapper) for i in range(16)]\n for t in threads:\n t.start()\n for t in threads:\n t.join()\n self.assertFalse(errors)", "metadata": "root.TestDispatcher.test_lock", "header": "['class', 'TestDispatcher', '(', 'BaseTest', ')', ':', '___EOS___']", "index": 122 } ]

[ { "span": "except BaseException as e:", "start_line": 136, "start_column": 12, "end_line": 136, "end_column": 38 } ]

[]

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[ { "content": " def __init__(self, subject, time, event, actions, content_type, using=None, skip=None):\n self.subject = subject\n self.time = time\n self.event = event\n self.content_type = content_type\n self.content_type_field = None\n self.actions = []\n self.append(actions)\n self.using = using\n\n if self.using:\n self.connection = connections[self.using]\n else:\n self.connection = connection\n\n try:\n from django.contrib.contenttypes.fields import GenericRelation\n except ImportError:\n from django.contrib.contenttypes.generic import GenericRelation\n\n if isinstance(subject, models.ManyToManyField):\n self.model = None\n self.db_table = subject.m2m_db_table()\n self.fields = [(subject.m2m_column_name(), ''), (subject.m2m_reverse_name(), '')]\n\n elif isinstance(subject, GenericRelation):\n self.model = None\n self.db_table = remote_field_model(subject)._meta.db_table\n self.fields = [(k.attname, k.db_type(connection=self.connection)) for k, v in get_fields_with_model(remote_field_model(subject), remote_field_model(subject)._meta) if not v]\n self.content_type_field = subject.content_type_field_name + '_id'\n\n elif isinstance(subject, models.ForeignKey):\n self.model = subject.model\n self.db_table = self.model._meta.db_table\n skip = skip or () + getattr(self.model, 'denorm_always_skip', ())\n self.fields = [(k.attname, k.db_type(connection=self.connection)) for k, v in get_fields_with_model(subject.model, self.model._meta) if not v and k.attname not in skip]\n\n elif hasattr(subject, \"_meta\"):\n self.model = subject\n self.db_table = self.model._meta.db_table\n # FIXME: need to check get_parent_list and add triggers to those\n # The below will only check the fields on *this* model, not parents\n skip = skip or () + getattr(self.model, 'denorm_always_skip', ())\n self.fields = []\n try:\n from django.db.models.fields.related import ForeignObjectRel\n except:\n from django.db.models.related import RelatedObject as ForeignObjectRel\n for k, v in get_fields_with_model(subject, self.model._meta):\n if isinstance(k, ForeignObjectRel):\n pass\n else:\n if not v and k.attname not in skip:\n self.fields.append((k.attname, k.db_type(connection=self.connection)))\n\n else:\n raise NotImplementedError", "metadata": "root.Trigger.__init__", "header": "['class', 'Trigger', '(', 'object', ')', ':', '___EOS___']", "index": 68 } ]

[ { "span": "except:", "start_line": 114, "start_column": 12, "end_line": 114, "end_column": 19 } ]

[]

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[ { "content": "def mpc_nthroot(z, n, prec, rnd=round_fast):\n \"\"\"\n Complex n-th root.\n\n Use Newton method as in the real case when it is faster,\n otherwise use z**(1/n)\n \"\"\"\n a, b = z\n if a[0] == 0 and b == fzero:\n re = mpf_nthroot(a, n, prec, rnd)\n return (re, fzero)\n if n < 2:\n if n == 0:\n return mpc_one\n if n == 1:\n return mpc_pos((a, b), prec, rnd)\n if n == -1:\n return mpc_div(mpc_one, (a, b), prec, rnd)\n inverse = mpc_nthroot((a, b), -n, prec+5, reciprocal_rnd[rnd])\n return mpc_div(mpc_one, inverse, prec, rnd)\n if n <= 20:\n prec2 = int(1.2 * (prec + 10))\n asign, aman, aexp, abc = a\n bsign, bman, bexp, bbc = b\n pf = mpc_abs((a,b), prec)\n if pf[-2] + pf[-1] > -10 and pf[-2] + pf[-1] < prec:\n af = to_fixed(a, prec2)\n bf = to_fixed(b, prec2)\n re, im = mpc_nthroot_fixed(af, bf, n, prec2)\n extra = 10\n re = from_man_exp(re, -prec2-extra, prec2, rnd)\n im = from_man_exp(im, -prec2-extra, prec2, rnd)\n return re, im\n fn = from_int(n)\n prec2 = prec+10 + 10\n nth = mpf_rdiv_int(1, fn, prec2)\n re, im = mpc_pow((a, b), (nth, fzero), prec2, rnd)\n re = normalize(re[0], re[1], re[2], re[3], prec, rnd)\n im = normalize(im[0], im[1], im[2], im[3], prec, rnd)\n return re, im", "metadata": "root.mpc_nthroot", "header": "['module', '___EOS___']", "index": 369 }, { "content": "def mpc_tan(z, prec, rnd=round_fast):\n \"\"\"Complex tangent. Computed as tan(a+bi) = sin(2a)/M + sinh(2b)/M*i\n where M = cos(2a) + cosh(2b).\"\"\"\n a, b = z\n asign, aman, aexp, abc = a\n bsign, bman, bexp, bbc = b\n if b == fzero: return mpf_tan(a, prec, rnd), fzero\n if a == fzero: return fzero, mpf_tanh(b, prec, rnd)\n wp = prec + 15\n a = mpf_shift(a, 1)\n b = mpf_shift(b, 1)\n c, s = mpf_cos_sin(a, wp)\n ch, sh = mpf_cosh_sinh(b, wp)\n # TODO: handle cancellation when c ~= -1 and ch ~= 1\n mag = mpf_add(c, ch, wp)\n re = mpf_div(s, mag, prec, rnd)\n im = mpf_div(sh, mag, prec, rnd)\n return re, im", "metadata": "root.mpc_tan", "header": "['module', '___EOS___']", "index": 484 } ]

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[ { "content": "def main():\n # Create a black image, a window\n img = np.zeros((300,512,3), np.uint8)\n cv2.namedWindow('image')\n cv2.namedWindow('derivatives')\n\n rn = get_renderer()\n\n tracked = {\n 'sph0': rn.vc.components[0],\n 'sph1': rn.vc.components[1],\n 'sph2': rn.vc.components[2],\n 'sph3': rn.vc.components[3],\n 'k0': rn.camera.k[0],\n 'k1': rn.camera.k[1],\n 'k2': rn.camera.k[2]\n }\n\n cnst = 1000\n for k in sorted(tracked.keys()):\n v = tracked[k]\n cv2.createTrackbar(k, 'image', 0,cnst, nothing)\n\n old_tracked = tracked\n cv2.setTrackbarPos('sph0', 'image', 800)\n while(1):\n cv2.imshow('image',rn.r)\n k = cv2.waitKey(1) & 0xFF\n if k == 27:\n break\n \n for k, v in tracked.items():\n v[:] = np.array(cv2.getTrackbarPos(k, 'image')).astype(np.float32)*4/cnst\n if tracked[k].r[0] != old_tracked[k].r[0]:\n drim = rn.dr_wrt(v).reshape(rn.shape)\n mn = np.mean(drim)\n drim /= np.max(np.abs(drim.ravel()))*2.\n drim += .5\n # drim = drim - np.min(drim)\n # drim = drim / np.max(drim)\n cv2.imshow('derivatives', drim)\n \n cv2.waitKey(1)\n old_tracked = deepcopy(tracked)\n # while True: \n # for k_change in sorted(tracked.keys()):\n # if k_change == 'sph0':\n # continue\n # for t in np.arange(0, np.pi, .05):\n # cv2.setTrackbarPos(k_change, 'image', int(np.sin(t)*1000))\n # cv2.imshow('image',rn.r)\n # k = cv2.waitKey(1) & 0xFF\n # if k == 27:\n # break\n # \n # for k, v in tracked.items():\n # v[:] = np.array(cv2.getTrackbarPos(k, 'image')).astype(np.float32)*4/cnst\n # if tracked[k].r[0] != old_tracked[k].r[0]:\n # drim = rn.dr_wrt(v).reshape(rn.shape)\n # mn = np.mean(drim)\n # drim /= np.max(np.abs(drim.ravel()))*2.\n # drim += .5\n # # drim = drim - np.min(drim)\n # # drim = drim / np.max(drim)\n # cv2.imshow('derivatives', drim)\n # \n # \n # print rn.vc.components\n # \n # cv2.waitKey(1)\n # old_tracked = deepcopy(tracked)\n\n cv2.destroyAllWindows()", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 29 } ]

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[ { "content": " def _ExecuteBatchRequest(self, requests):\n \"\"\"Executes the given |requests| in batches.\n\n Documentation:\n * https://developers.google.com/api-client-library/python/guide/batch\n\n Args:\n requests: list of (request_id, request) pairs\n \"\"\"\n def _BatchHttpRequestCallback(request_id, response, exception):\n if exception is not None:\n print 'Error: %s' % exception\n else:\n self._PrintJsonResponse(request_id, response)\n\n batch = None\n num_batch_requests = 0\n MAX_BATCH_SIZE = 1000 # documented at the URL above\n\n for request_id, request in requests:\n if batch is None:\n batch = http.BatchHttpRequest(\n callback=_BatchHttpRequestCallback)\n batch.add(request, request_id=request_id)\n num_batch_requests += 1\n if num_batch_requests == MAX_BATCH_SIZE:\n batch.execute(http=self.__auth_http)\n batch = None\n num_batch_requests = 0\n\n # Execute the left-over requests in the batch if there are any.\n if batch is not None:\n batch.execute(http=self.__auth_http)\n batch = None", "metadata": "root.GceHandler._ExecuteBatchRequest", "header": "['class', 'GceHandler', '(', 'object', ')', ':', '___EOS___']", "index": 122 } ]

[ { "span": "batch ", "start_line": 155, "start_column": 12, "end_line": 155, "end_column": 17 } ]

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[ { "content": "import sys\nimport io\n\nPY2 = (sys.version_info[0] == 2)\n\nif PY2:\n import unicodecsv, subprocess32, uritemplate\n unicodecsv.field_size_limit(sys.maxsize)\n \n check_output = subprocess32.check_output\n CalledProcessError = subprocess32.CalledProcessError\n \n csvIO = io.BytesIO\n \n \n \n \n \n \n \n from future import standard_library\n standard_library.install_aliases()\n\nelse:\n import csv, subprocess\n from uritemplate import expand as expand_uri\n standard_library = None\n \n check_output = subprocess.check_output\n CalledProcessError = subprocess.CalledProcessError\n \n csvIO = io.StringIO\n \n \n \n \n \n\ntry:\n import cairo\nexcept ImportError:\n # http://stackoverflow.com/questions/11491268/install-pycairo-in-virtualenv\n import cairocffi as cairo\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": " def csvreader(file, encoding=None, **kwargs):\n ''' Pass encoding to unicodecsv\n '''\n if encoding is not None:\n kwargs['encoding'] = encoding\n \n if 'delimiter' in kwargs:\n kwargs['delimiter'] = str(kwargs['delimiter'])\n\n return unicodecsv.reader(file, **kwargs)", "metadata": "root.csvreader", "header": "['module', '___EOS___']", "index": 14 }, { "content": " def csvwriter(file, encoding=None, **kwargs):\n ''' Pass encoding to unicodecsv\n '''\n if encoding is not None:\n kwargs['encoding'] = encoding\n\n return unicodecsv.writer(file, **kwargs)", "metadata": "root.csvwriter", "header": "['module', '___EOS___']", "index": 25 }, { "content": " def csvDictReader(file, encoding=None, delimiter=None, **kwargs):\n ''' Pass encoding to unicodecsv\n '''\n # Python2 unicodecsv requires this be not unicode\n if delimiter is not None:\n kwargs['delimiter'] = delimiter.encode('ascii')\n \n if encoding is not None:\n kwargs['encoding'] = encoding\n\n return unicodecsv.DictReader(file, **kwargs)", "metadata": "root.csvDictReader", "header": "['module', '___EOS___']", "index": 33 }, { "content": " def csvDictWriter(file, fieldnames, encoding=None, delimiter=None, **kwargs):\n ''' Pass encoding to unicodecsv\n '''\n # Python2 unicodecsv requires this be not unicode\n if delimiter is not None:\n kwargs['delimiter'] = delimiter.encode('ascii')\n \n if encoding is not None:\n kwargs['encoding'] = encoding\n\n return unicodecsv.DictWriter(file, fieldnames, **kwargs)", "metadata": "root.csvDictWriter", "header": "['module', '___EOS___']", "index": 45 }, { "content": " def csvopen(filename, mode='r', encoding=None):\n ''' Discard encoding\n '''\n return io.FileIO(filename, mode=mode)", "metadata": "root.csvopen", "header": "['module', '___EOS___']", "index": 57 }, { "content": " def expand_uri(template, args):\n '''\n '''\n new_args = {k: v for (k, v) in args.items() if not hasattr(v, 'encode')}\n new_args.update({k: v.encode('utf8') for (k, v) in args.items() if hasattr(v, 'encode')})\n \n return uritemplate.expand(template, new_args)", "metadata": "root.expand_uri", "header": "['module', '___EOS___']", "index": 62 }, { "content": " def csvreader(file, encoding=None, **kwargs):\n ''' Discard encoding\n '''\n if 'delimiter' in kwargs:\n kwargs['delimiter'] = str(kwargs['delimiter'])\n\n return csv.reader(file, **kwargs)", "metadata": "root.csvreader", "header": "['module', '___EOS___']", "index": 83 }, { "content": " def csvwriter(file, encoding=None, **kwargs):\n ''' Discard encoding\n '''\n return csv.writer(file, **kwargs)", "metadata": "root.csvwriter", "header": "['module', '___EOS___']", "index": 91 }, { "content": " def csvDictReader(file, encoding=None, **kwargs):\n ''' Discard encoding\n '''\n return csv.DictReader(file, **kwargs)", "metadata": "root.csvDictReader", "header": "['module', '___EOS___']", "index": 96 }, { "content": " def csvDictWriter(file, fieldnames, encoding=None, **kwargs):\n ''' Discard encoding\n '''\n return csv.DictWriter(file, fieldnames, **kwargs)", "metadata": "root.csvDictWriter", "header": "['module', '___EOS___']", "index": 101 }, { "content": " def csvopen(filename, mode='r', encoding=None):\n ''' Pass encoding to io.open\n '''\n return io.open(filename, mode=mode, encoding=encoding)", "metadata": "root.csvopen", "header": "['module', '___EOS___']", "index": 106 } ]

[ { "span": "from uritemplate import expand as expand_uri", "start_line": 75, "start_column": 4, "end_line": 75, "end_column": 48 }, { "span": "import cairo", "start_line": 112, "start_column": 4, "end_line": 112, "end_column": 16 }, { "span": "import cairocffi as cairo", "start_line": 115, "start_column": 4, "end_line": 115, "end_column": 29 } ]

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[ { "content": " def testHex(self):\n self.assertEqual(hex(23), '0x17')\n try:\n h = hex(23.2)\n self.fail(\"No hex() argument error raised\")\n except TypeError, why:\n self.assertEqual(why.args[0], \"hex() argument can't be converted to hex\")", "metadata": "root.BuiltinTest.testHex", "header": "['class', 'BuiltinTest', '(', 'UnitTest', ')', ':', '___EOS___']", "index": 167 }, { "content": " def testOct(self):\n self.assertEqual(oct(23), '027')\n try:\n o = oct(23.2)\n self.fail(\"No oct() argument error raised\")\n except TypeError, why:\n self.assertEqual(str(why), \"oct() argument can't be converted to oct\")", "metadata": "root.BuiltinTest.testOct", "header": "['class', 'BuiltinTest', '(', 'UnitTest', ')', ':', '___EOS___']", "index": 175 }, { "content": " def testLocals(self):\n v1 = 1\n v2 = 2\n\n local_vars = locals()\n self.assertEqual(len(local_vars), 3)\n self.assertEqual(local_vars['v1'], 1)\n\n def fn1():\n a = 1\n def fn2():\n b = 1\n c = locals()\n return c\n return fn2()\n\n local_vars = fn1()\n self.assertEqual(local_vars, {'b': 1})\n \n def fn2():\n lx = 3\n def g():\n li = lx\n return locals()\n return g()\n self.assertEqual(fn2(), {'li':3, 'lx':3}, \"locals() bugs: #589\")\n\n def fn3():\n lx = 3\n def g():\n def lh():\n li = lx\n return locals()\n return locals(), lh()\n return g()\n outer_locals, inner_locals = fn3()\n self.assertEqual(inner_locals, {'li':3, 'lx':3}, \"locals() bugs: #589\")\n keys = outer_locals.keys()\n keys.sort()\n self.assertEqual(keys, ['lh', 'lx'], \"locals() bugs: #589\")\n\n def fn4(x):\n class X:\n x = 12\n def fn4(self):\n return x\n locals()\n return X\n self.assertEqual(fn4(1).x, 12)\n\n args = {'test1': 5, 'test2': 'hello'}\n la = LocalsTest()\n argsreturn = la.testkwargs(**args)\n args['self'] = la\n self.assertEqual(args, argsreturn)\n\n del args['self']\n argsreturn = la.testargs(**args)\n args['self'] = la\n self.assertEqual(args, argsreturn)\n\n t = ColourThing()\n t.rgb = 1\n self.assertEqual(t.rgb, 1)\n\n args = foo(0, 1, 2, 3, 4)\n self.assertEqual(args, {'_some': 0, '_additional': 5,\n '_of': 3, '_list': 2,\n '_long': 1, '_arguments': 4})", "metadata": "root.BuiltinTest.testLocals", "header": "['class', 'BuiltinTest', '(', 'UnitTest', ')', ':', '___EOS___']", "index": 300 } ]

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[ { "content": "def test_mapbox_fix_point_coordinates():\n app, db, admin = setup()\n app.config['MAPBOX_FIX_COORDINATES_ORDER'] = True\n GeoModel = create_models(db)\n db.create_all()\n GeoModel.query.delete()\n db.session.commit()\n\n view = ModelView(GeoModel, db.session)\n admin.add_view(view)\n\n # Make some test clients\n client = app.test_client()\n\n rv = client.post('/admin/geomodel/new/', data={\n \"name\": \"test1\",\n \"point\": '{\"type\": \"Point\", \"coordinates\": [125.8, 10.0]}',\n \"line\": '{\"type\": \"LineString\", \"coordinates\": [[50.2345, 94.2], [50.21, 94.87]]}',\n \"polygon\": '{\"type\": \"Polygon\", \"coordinates\": [[[100.0, 0.0], [101.0, 0.0], [101.0, 1.0], [100.0, 1.0], [100.0, 0.0]]]}',\n \"multi\": '{\"type\": \"MultiPoint\", \"coordinates\": [[100.0, 0.0], [101.0, 1.0]]}',\n })\n\n model = db.session.query(GeoModel).first()\n # Notice how the coordinates are reversed here, i.e. longitude first which\n # is the way it's stored in PostGIS columns.\n eq_(list(to_shape(model.point).coords), [(10.0, 125.8)])\n eq_(list(to_shape(model.line).coords), [(94.2, 50.2345), (94.87, 50.21)])\n eq_(list(to_shape(model.polygon).exterior.coords),\n [(0.0, 100.0), (0.0, 101.0), (1.0, 101.0), (1.0, 100.0), (0.0, 100.0)])\n eq_(list(to_shape(model.multi).geoms[0].coords), [(0.0, 100.0)])\n eq_(list(to_shape(model.multi).geoms[1].coords), [(1.0, 101.0)])\n\n rv = client.get('/admin/geomodel/')\n eq_(rv.status_code, 200)\n\n html = rv.data.decode('utf-8')\n pattern = r'(.|\\n)+({.*\"type\": ?\"Point\".*})</textarea>(.|\\n)+'\n group = re.match(pattern, html).group(2)\n p = json.loads(group)\n\n # Reversed order again, so that it's parsed correctly by leaflet\n eq_(p['coordinates'][0], 10.0)\n eq_(p['coordinates'][1], 125.8)", "metadata": "root.test_mapbox_fix_point_coordinates", "header": "['module', '___EOS___']", "index": 125 } ]

[ { "span": "rv ", "start_line": 139, "start_column": 4, "end_line": 139, "end_column": 6 } ]

[ { "span": "rv ", "start_line": 157, "start_column": 4, "end_line": 157, "end_column": 6 } ]

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"status", "\\u", "code_", ",_", "200_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "html_", "=_", "rv_", "._", "data_", "._", "decode_", "(_", "'", "utf", "-", "8", "'_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "pattern_", "=_", "r", "'(", ".|", "\\\\", "n", ")+", "({", ".*", "\"", "type", "\":", " ", "?\"", "Point", "\".*", "})", "</", "text", "area", ">(.", "|\\\\", "n", ")+", "'_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "group_", "=_", "re_", "._", "match_", "(_", "pattern_", ",_", "html_", ")_", "._", "group_", "(_", "2_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "p_", "=_", "json_", "._", "loads_", "(_", "group_", ")_", "\\u\\u\\uNEWLINE\\u\\u\\u_", "\\u\\u\\uNL\\u\\u\\u_", "#", " ", "Revers", "ed", " ", "order", " ", "again", ",", " ", "so", " ", "tha", "t", " ", "it", "'", "s", " ", "parsed", " ", "correct", "ly", " ", "by", " ", "leaf", "let_", "\\u\\u\\uNL\\u\\u\\u_", "eq\\u_", "(_", "p_", "[_", "'", "coordinate", "s", "'_", "]_", "[_", "0_", "]_", ",_", "10.0_", ")_", 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[ { "content": "#\n# CORE\n# Copyright (c)2011-2012 the Boeing Company.\n# See the LICENSE file included in this distribution.\n#\n# author: Jeff Ahrenholz <jeffrey.m.ahrenholz@boeing.com>\n#\n''' PhysicalNode class for including real systems in the emulated network.\n'''\nimport os, threading, subprocess\n\nfrom core.misc.ipaddr import *\nfrom core.misc.utils import *\nfrom core.constants import *\nfrom core.api import coreapi\nfrom core.coreobj import PyCoreNode, PyCoreNetIf\nfrom core.emane.nodes import EmaneNode\nif os.uname()[0] == \"Linux\":\n from core.netns.vnet import LxBrNet\n from core.netns.vif import GreTap\nelif os.uname()[0] == \"FreeBSD\":\n from core.bsd.vnet import NetgraphNet\n\n\n\n \n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class PhysicalNode(PyCoreNode):\n \n \n\n\n\n\n \n \n \n\n \n\n\n \n\n\n \n \n\n\n\n", "metadata": "root.PhysicalNode", "header": "['module', '___EOS___']", "index": 24 }, { "content": " def __init__(self, session, objid = None, name = None,\n nodedir = None, verbose = False, start = True):\n PyCoreNode.__init__(self, session, objid, name, verbose=verbose,\n start=start)\n self.nodedir = nodedir\n self.up = start\n self.lock = threading.RLock()\n self._mounts = []\n if start:\n self.startup()", "metadata": "root.PhysicalNode.__init__", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 25 }, { "content": " def boot(self):\n self.session.services.bootnodeservices(self)", "metadata": "root.PhysicalNode.boot", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 36 }, { "content": " def validate(self):\n self.session.services.validatenodeservices(self)", "metadata": "root.PhysicalNode.validate", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 39 }, { "content": " def startup(self):\n self.lock.acquire()\n try:\n self.makenodedir()\n #self.privatedir(\"/var/run\")\n #self.privatedir(\"/var/log\")\n except OSError, e:\n self.exception(coreapi.CORE_EXCP_LEVEL_ERROR,\n \"PhysicalNode.startup()\", e)\n finally:\n self.lock.release()", "metadata": "root.PhysicalNode.startup", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 42 }, { "content": " def shutdown(self):\n if not self.up:\n return\n self.lock.acquire()\n while self._mounts:\n source, target = self._mounts.pop(-1)\n self.umount(target)\n for netif in self.netifs():\n netif.shutdown()\n self.rmnodedir()\n self.lock.release()", "metadata": "root.PhysicalNode.shutdown", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 54 }, { "content": " def termcmdstring(self, sh = \"/bin/sh\"):\n ''' The broker will add the appropriate SSH command to open a terminal\n on this physical node.\n '''\n return sh", "metadata": "root.PhysicalNode.termcmdstring", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 67 }, { "content": " def cmd(self, args, wait = True):\n ''' run a command on the physical node\n '''\n os.chdir(self.nodedir)\n try:\n if wait:\n # os.spawnlp(os.P_WAIT, args)\n subprocess.call(args)\n else:\n # os.spawnlp(os.P_NOWAIT, args)\n subprocess.Popen(args)\n except CalledProcessError, e:\n self.warn(\"cmd exited with status %s: %s\" % (e, str(args)))", "metadata": "root.PhysicalNode.cmd", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 73 }, { "content": " def cmdresult(self, args):\n ''' run a command on the physical node and get the result\n '''\n os.chdir(self.nodedir)\n # in Python 2.7 we can use subprocess.check_output() here\n tmp = subprocess.Popen(args, stdin = open(os.devnull, 'r'),\n stdout = subprocess.PIPE,\n stderr = subprocess.STDOUT)\n result, err = tmp.communicate() # err will always be None\n status = tmp.wait()\n return (status, result)", "metadata": "root.PhysicalNode.cmdresult", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 87 }, { "content": " def shcmd(self, cmdstr, sh = \"/bin/sh\"):\n return self.cmd([sh, \"-c\", cmdstr])", "metadata": "root.PhysicalNode.shcmd", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 99 }, { "content": " def sethwaddr(self, ifindex, addr):\n ''' same as SimpleLxcNode.sethwaddr()\n '''\n self._netif[ifindex].sethwaddr(addr)\n ifname = self.ifname(ifindex)\n if self.up:\n (status, result) = self.cmdresult([IP_BIN, \"link\", \"set\", \"dev\",\n ifname, \"address\", str(addr)])\n if status:\n self.exception(coreapi.CORE_EXCP_LEVEL_ERROR,\n \"PhysicalNode.sethwaddr()\",\n \"error setting MAC address %s\" % str(addr))", "metadata": "root.PhysicalNode.sethwaddr", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 102 }, { "content": " def addaddr(self, ifindex, addr):\n ''' same as SimpleLxcNode.addaddr()\n '''\n if self.up:\n self.cmd([IP_BIN, \"addr\", \"add\", str(addr),\n \"dev\", self.ifname(ifindex)])\n self._netif[ifindex].addaddr(addr)", "metadata": "root.PhysicalNode.addaddr", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 115 }, { "content": " def deladdr(self, ifindex, addr):\n ''' same as SimpleLxcNode.deladdr()\n '''\n try:\n self._netif[ifindex].deladdr(addr)\n except ValueError:\n self.warn(\"trying to delete unknown address: %s\" % addr)\n if self.up:\n self.cmd([IP_BIN, \"addr\", \"del\", str(addr),\n \"dev\", self.ifname(ifindex)])", "metadata": "root.PhysicalNode.deladdr", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 123 }, { "content": " def adoptnetif(self, netif, ifindex, hwaddr, addrlist):\n ''' The broker builds a GreTap tunnel device to this physical node.\n When a link message is received linking this node to another part of\n the emulation, no new interface is created; instead, adopt the\n GreTap netif as the node interface.\n '''\n netif.name = \"gt%d\" % ifindex\n netif.node = self\n self.addnetif(netif, ifindex)\n # use a more reasonable name, e.g. \"gt0\" instead of \"gt.56286.150\"\n if self.up:\n self.cmd([IP_BIN, \"link\", \"set\", \"dev\", netif.localname, \"down\"])\n self.cmd([IP_BIN, \"link\", \"set\", netif.localname, \"name\", netif.name])\n netif.localname = netif.name\n if hwaddr:\n self.sethwaddr(ifindex, hwaddr)\n for addr in maketuple(addrlist):\n self.addaddr(ifindex, addr)\n if self.up:\n self.cmd([IP_BIN, \"link\", \"set\", \"dev\", netif.localname, \"up\"])", "metadata": "root.PhysicalNode.adoptnetif", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 134 }, { "content": " def linkconfig(self, netif, bw = None, delay = None,\n loss = None, duplicate = None, jitter = None, netif2 = None):\n ''' Apply tc queing disciplines using LxBrNet.linkconfig()\n '''\n if os.uname()[0] == \"Linux\":\n netcls = LxBrNet\n elif os.uname()[0] == \"FreeBSD\":\n netcls = NetgraphNet\n else:\n raise NotImplementedError, \"unsupported platform\"\n # borrow the tc qdisc commands from LxBrNet.linkconfig()\n tmp = netcls(session=self.session, start=False)\n tmp.up = True\n tmp.linkconfig(netif, bw=bw, delay=delay, loss=loss,\n duplicate=duplicate, jitter=jitter, netif2=netif2)\n del tmp", "metadata": "root.PhysicalNode.linkconfig", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 155 }, { "content": " def newifindex(self):\n self.lock.acquire()\n try:\n while self.ifindex in self._netif:\n self.ifindex += 1\n ifindex = self.ifindex\n self.ifindex += 1\n return ifindex\n finally:\n self.lock.release()", "metadata": "root.PhysicalNode.newifindex", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 172 }, { "content": " def newnetif(self, net = None, addrlist = [], hwaddr = None,\n ifindex = None, ifname = None):\n if self.up and net is None:\n raise NotImplementedError\n if ifindex is None:\n ifindex = self.newifindex()\n\n if self.up:\n # this is reached when this node is linked to a network node\n # tunnel to net not built yet, so build it now and adopt it\n gt = self.session.broker.addnettunnel(net.objid)\n if gt is None or len(gt) != 1:\n self.session.warn(\"Error building tunnel from PhysicalNode.\"\n \"newnetif()\")\n gt = gt[0]\n net.detach(gt)\n self.adoptnetif(gt, ifindex, hwaddr, addrlist)\n return ifindex\n \n # this is reached when configuring services (self.up=False)\n if ifname is None:\n ifname = \"gt%d\" % ifindex\n netif = GreTap(node = self, name = ifname, session = self.session,\n start = False)\n self.adoptnetif(netif, ifindex, hwaddr, addrlist)\n return ifindex", "metadata": "root.PhysicalNode.newnetif", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 183 }, { "content": " def privatedir(self, path):\n if path[0] != \"/\":\n raise ValueError, \"path not fully qualified: \" + path\n hostpath = os.path.join(self.nodedir,\n os.path.normpath(path).strip('/').replace('/', '.'))\n try:\n os.mkdir(hostpath)\n except OSError:\n pass\n except Exception, e:\n raise Exception, e\n self.mount(hostpath, path)", "metadata": "root.PhysicalNode.privatedir", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 211 }, { "content": " def mount(self, source, target):\n source = os.path.abspath(source)\n self.info(\"mounting %s at %s\" % (source, target))\n try:\n os.makedirs(target)\n except OSError:\n pass\n try:\n self.cmd([MOUNT_BIN, \"--bind\", source, target])\n self._mounts.append((source, target))\n except:\n self.warn(\"mounting failed for %s at %s\" % (source, target))", "metadata": "root.PhysicalNode.mount", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 224 }, { "content": " def umount(self, target):\n self.info(\"unmounting '%s'\" % target)\n try:\n self.cmd([UMOUNT_BIN, \"-l\", target])\n except:\n self.warn(\"unmounting failed for %s\" % target)", "metadata": "root.PhysicalNode.umount", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 237 }, { "content": " def opennodefile(self, filename, mode = \"w\"):\n dirname, basename = os.path.split(filename)\n if not basename:\n raise ValueError, \"no basename for filename: \" + filename\n if dirname and dirname[0] == \"/\":\n dirname = dirname[1:]\n dirname = dirname.replace(\"/\", \".\")\n dirname = os.path.join(self.nodedir, dirname)\n if not os.path.isdir(dirname):\n os.makedirs(dirname, mode = 0755)\n hostfilename = os.path.join(dirname, basename)\n return open(hostfilename, mode)", "metadata": "root.PhysicalNode.opennodefile", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 244 }, { "content": " def nodefile(self, filename, contents, mode = 0644):\n f = self.opennodefile(filename, \"w\")\n f.write(contents)\n os.chmod(f.name, mode)\n f.close()\n self.info(\"created nodefile: '%s'; mode: 0%o\" % (f.name, mode))", "metadata": "root.PhysicalNode.nodefile", "header": "['class', 'PhysicalNode', '(', 'PyCoreNode', ')', ':', '___EOS___']", "index": 257 } ]

[ { "span": "from core.coreobj import PyCoreNode, PyCoreNetIf", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 48 }, { "span": "from core.emane.nodes import EmaneNode", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 38 } ]

[]

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2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 4, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 ]

[ { "content": " def test_ctor_parent(self):\n _PARENT_KIND = 'KIND1'\n _PARENT_ID = 1234\n _PARENT_PROJECT = 'PROJECT-ALT'\n _PARENT_NAMESPACE = 'NAMESPACE'\n _CHILD_KIND = 'KIND2'\n _CHILD_ID = 2345\n _PATH = [\n {'kind': _PARENT_KIND, 'id': _PARENT_ID},\n {'kind': _CHILD_KIND, 'id': _CHILD_ID},\n ]\n parent_key = self._makeOne(_PARENT_KIND, _PARENT_ID,\n project=_PARENT_PROJECT,\n namespace=_PARENT_NAMESPACE)\n key = self._makeOne(_CHILD_KIND, _CHILD_ID, parent=parent_key)\n self.assertEqual(key.project, parent_key.project)\n self.assertEqual(key.namespace, parent_key.namespace)\n self.assertEqual(key.kind, _CHILD_KIND)\n self.assertEqual(key.path, _PATH)\n self.assertTrue(key.parent is parent_key)", "metadata": "root.TestKey.test_ctor_parent", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 39 }, { "content": " def test__clone_with_parent(self):\n _PROJECT = 'PROJECT-ALT'\n _NAMESPACE = 'NAMESPACE'\n _KIND1 = 'PARENT'\n _KIND2 = 'KIND'\n _ID1 = 1234\n _ID2 = 2345\n _PATH = [{'kind': _KIND1, 'id': _ID1}, {'kind': _KIND2, 'id': _ID2}]\n\n parent = self._makeOne(_KIND1, _ID1, namespace=_NAMESPACE,\n project=_PROJECT)\n key = self._makeOne(_KIND2, _ID2, parent=parent)\n self.assertTrue(key.parent is parent)\n clone = key._clone()\n self.assertTrue(clone.parent is key.parent)\n self.assertEqual(clone.project, _PROJECT)\n self.assertEqual(clone.namespace, _NAMESPACE)\n self.assertEqual(clone.path, _PATH)", "metadata": "root.TestKey.test__clone_with_parent", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 128 }, { "content": " def test___eq_____ne___w_non_key(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _NAME = 'one'\n key = self._makeOne(_KIND, _NAME, project=_PROJECT)\n self.assertFalse(key == object())\n self.assertTrue(key != object())", "metadata": "root.TestKey.test___eq_____ne___w_non_key", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 147 }, { "content": " def test___eq_____ne___two_incomplete_keys_same_kind(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n key1 = self._makeOne(_KIND, project=_PROJECT)\n key2 = self._makeOne(_KIND, project=_PROJECT)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___two_incomplete_keys_same_kind", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 155 }, { "content": " def test___eq_____ne___incomplete_key_w_complete_key_same_kind(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _ID = 1234\n key1 = self._makeOne(_KIND, project=_PROJECT)\n key2 = self._makeOne(_KIND, _ID, project=_PROJECT)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___incomplete_key_w_complete_key_same_kind", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 163 }, { "content": " def test___eq_____ne___complete_key_w_incomplete_key_same_kind(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _ID = 1234\n key1 = self._makeOne(_KIND, _ID, project=_PROJECT)\n key2 = self._makeOne(_KIND, project=_PROJECT)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___complete_key_w_incomplete_key_same_kind", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 172 }, { "content": " def test___eq_____ne___same_kind_different_ids(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _ID1 = 1234\n _ID2 = 2345\n key1 = self._makeOne(_KIND, _ID1, project=_PROJECT)\n key2 = self._makeOne(_KIND, _ID2, project=_PROJECT)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_different_ids", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 181 }, { "content": " def test___eq_____ne___same_kind_and_id(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _ID = 1234\n key1 = self._makeOne(_KIND, _ID, project=_PROJECT)\n key2 = self._makeOne(_KIND, _ID, project=_PROJECT)\n self.assertTrue(key1 == key2)\n self.assertFalse(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_and_id", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 191 }, { "content": " def test___eq_____ne___same_kind_and_id_different_project(self):\n _PROJECT1 = 'PROJECT1'\n _PROJECT2 = 'PROJECT2'\n _KIND = 'KIND'\n _ID = 1234\n key1 = self._makeOne(_KIND, _ID, project=_PROJECT1)\n key2 = self._makeOne(_KIND, _ID, project=_PROJECT2)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_and_id_different_project", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 200 }, { "content": " def test___eq_____ne___same_kind_and_id_different_namespace(self):\n _PROJECT = 'PROJECT'\n _NAMESPACE1 = 'NAMESPACE1'\n _NAMESPACE2 = 'NAMESPACE2'\n _KIND = 'KIND'\n _ID = 1234\n key1 = self._makeOne(_KIND, _ID, project=_PROJECT,\n namespace=_NAMESPACE1)\n key2 = self._makeOne(_KIND, _ID, project=_PROJECT,\n namespace=_NAMESPACE2)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_and_id_different_namespace", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 210 }, { "content": " def test___eq_____ne___same_kind_different_names(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _NAME1 = 'one'\n _NAME2 = 'two'\n key1 = self._makeOne(_KIND, _NAME1, project=_PROJECT)\n key2 = self._makeOne(_KIND, _NAME2, project=_PROJECT)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_different_names", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 223 }, { "content": " def test___eq_____ne___same_kind_and_name(self):\n _PROJECT = 'PROJECT'\n _KIND = 'KIND'\n _NAME = 'one'\n key1 = self._makeOne(_KIND, _NAME, project=_PROJECT)\n key2 = self._makeOne(_KIND, _NAME, project=_PROJECT)\n self.assertTrue(key1 == key2)\n self.assertFalse(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_and_name", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 233 }, { "content": " def test___eq_____ne___same_kind_and_name_different_project(self):\n _PROJECT1 = 'PROJECT1'\n _PROJECT2 = 'PROJECT2'\n _KIND = 'KIND'\n _NAME = 'one'\n key1 = self._makeOne(_KIND, _NAME, project=_PROJECT1)\n key2 = self._makeOne(_KIND, _NAME, project=_PROJECT2)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_and_name_different_project", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 242 }, { "content": " def test___eq_____ne___same_kind_and_name_different_namespace(self):\n _PROJECT = 'PROJECT'\n _NAMESPACE1 = 'NAMESPACE1'\n _NAMESPACE2 = 'NAMESPACE2'\n _KIND = 'KIND'\n _NAME = 'one'\n key1 = self._makeOne(_KIND, _NAME, project=_PROJECT,\n namespace=_NAMESPACE1)\n key2 = self._makeOne(_KIND, _NAME, project=_PROJECT,\n namespace=_NAMESPACE2)\n self.assertFalse(key1 == key2)\n self.assertTrue(key1 != key2)", "metadata": "root.TestKey.test___eq_____ne___same_kind_and_name_different_namespace", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 252 }, { "content": " def test_completed_key_on_partial_w_id(self):\n key = self._makeOne('KIND', project=self._DEFAULT_PROJECT)\n _ID = 1234\n new_key = key.completed_key(_ID)\n self.assertFalse(key is new_key)\n self.assertEqual(new_key.id, _ID)\n self.assertEqual(new_key.name, None)", "metadata": "root.TestKey.test_completed_key_on_partial_w_id", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 290 }, { "content": " def test_completed_key_on_partial_w_name(self):\n key = self._makeOne('KIND', project=self._DEFAULT_PROJECT)\n _NAME = 'NAME'\n new_key = key.completed_key(_NAME)\n self.assertFalse(key is new_key)\n self.assertEqual(new_key.id, None)\n self.assertEqual(new_key.name, _NAME)", "metadata": "root.TestKey.test_completed_key_on_partial_w_name", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 298 }, { "content": " def test_parent_multiple_calls(self):\n _PARENT_KIND = 'KIND1'\n _PARENT_ID = 1234\n _PARENT_PATH = [{'kind': _PARENT_KIND, 'id': _PARENT_ID}]\n key = self._makeOne(_PARENT_KIND, _PARENT_ID, 'KIND2',\n project=self._DEFAULT_PROJECT)\n parent = key.parent\n self.assertEqual(parent.path, _PARENT_PATH)\n new_parent = key.parent\n self.assertTrue(parent is new_parent)", "metadata": "root.TestKey.test_parent_multiple_calls", "header": "['class', 'TestKey', '(', 'unittest2', '.', 'TestCase', ')', ':', '___EOS___']", "index": 421 } ]

[ { "span": "self.assertTrue(key.parent is parent_key)", "start_line": 58, "start_column": 8, "end_line": 58, "end_column": 49 }, { "span": "self.assertTrue(key.parent is parent)", "start_line": 140, "start_column": 8, "end_line": 140, "end_column": 45 }, { "span": "self.assertTrue(clone.parent is key.parent)", "start_line": 142, "start_column": 8, "end_line": 142, "end_column": 51 }, { "span": "self.assertFalse(key == object())", "start_line": 152, "start_column": 8, "end_line": 152, "end_column": 41 }, { "span": "self.assertTrue(key != object())", "start_line": 153, "start_column": 8, "end_line": 153, "end_column": 40 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 160, "start_column": 8, "end_line": 160, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 161, "start_column": 8, "end_line": 161, "end_column": 37 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 169, "start_column": 8, "end_line": 169, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 170, "start_column": 8, "end_line": 170, "end_column": 37 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 178, "start_column": 8, "end_line": 178, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 179, "start_column": 8, "end_line": 179, "end_column": 37 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 188, "start_column": 8, "end_line": 188, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 189, "start_column": 8, "end_line": 189, "end_column": 37 }, { "span": "self.assertTrue(key1 == key2)", "start_line": 197, "start_column": 8, "end_line": 197, "end_column": 37 }, { "span": "self.assertFalse(key1 != key2)", "start_line": 198, "start_column": 8, "end_line": 198, "end_column": 38 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 207, "start_column": 8, "end_line": 207, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 208, "start_column": 8, "end_line": 208, "end_column": 37 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 220, "start_column": 8, "end_line": 220, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 221, "start_column": 8, "end_line": 221, "end_column": 37 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 230, "start_column": 8, "end_line": 230, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 231, "start_column": 8, "end_line": 231, "end_column": 37 }, { "span": "self.assertTrue(key1 == key2)", "start_line": 239, "start_column": 8, "end_line": 239, "end_column": 37 }, { "span": "self.assertFalse(key1 != key2)", "start_line": 240, "start_column": 8, "end_line": 240, "end_column": 38 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 249, "start_column": 8, "end_line": 249, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 250, "start_column": 8, "end_line": 250, "end_column": 37 }, { "span": "self.assertFalse(key1 == key2)", "start_line": 262, "start_column": 8, "end_line": 262, "end_column": 38 }, { "span": "self.assertTrue(key1 != key2)", "start_line": 263, "start_column": 8, "end_line": 263, "end_column": 37 }, { "span": "self.assertFalse(key is new_key)", "start_line": 294, "start_column": 8, "end_line": 294, "end_column": 40 }, { "span": "self.assertFalse(key is new_key)", "start_line": 302, "start_column": 8, "end_line": 302, "end_column": 40 }, { "span": "self.assertTrue(parent is new_parent)", "start_line": 430, "start_column": 8, "end_line": 430, "end_column": 45 } ]

[]

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[ { "content": " def test_0_simple_response(self):\n client = self.connection()\n rsp = client.request('GET', '/', headers=[\n ('Accept','*/*'),\n ('Accept-Charset','utf-8'),\n ])\n payload = eval(rsp.body)\n #print payload\n self.assertTrue('entries' in payload)\n self.assertEquals(len(payload['entries']), 0)\n client.disconnect()", "metadata": "root.KVSExample.test_0_simple_response", "header": "['class', 'KVSExample', '(', 'LiveTestCase', ')', ':', '___EOS___']", "index": 6 }, { "content": " def _test_put_get_delete(self, reconnect):\n orig_payload = {'value': {'a': u'Aaa', 'b': u'Bee', 'j': u'Jey'}}\n orig_payload_s = repr(orig_payload)\n send_payload_headers = [\n ('Content-type', 'text/x-python'),\n ('Content-length', str(len(orig_payload_s)))\n ]\n \n client = self.connection()\n \n rsp = client.request('PUT', '/entry/a', body=orig_payload_s, headers=send_payload_headers)\n rsp.read() # finish response\n try:\n self.assertTrue(rsp.is_ok, rsp.status)\n except:\n print >> sys.stderr, rsp.body\n raise\n \n client = reconnect(client)\n rsp = client.request('GET', '/entry/a')\n self.assertTrue(rsp.is_ok)\n rsp_payload = eval(rsp.body)\n print rsp_payload\n self.assertTrue('value' in rsp_payload)\n value = rsp_payload['value']\n self.assertEquals(rsp_payload['value']['a'], orig_payload['value']['a'])\n self.assertEquals(rsp_payload['value']['b'], orig_payload['value']['b'])\n self.assertEquals(rsp_payload['value']['j'], orig_payload['value']['j'])\n \n client.disconnect()", "metadata": "root.KVSExample._test_put_get_delete", "header": "['class', 'KVSExample', '(', 'LiveTestCase', ')', ':', '___EOS___']", "index": 34 }, { "content": "def unused():\n rsp = self.client.request('GET', '/', headers=[\n ('Accept','text/html,application/xml;q=0.9,*/*;q=0.8'),\n ('Accept-Charset','ISO-8859-1,utf-8;q=0.7,*;q=0.7'),\n ])\n \n self.assertTrue(rsp.is_ok)\n \n self.assertResponseHeaderIsSet(rsp, 'content-length')\n self.assertResponseHeaderEquals(rsp, 'content-type', 'text/html; charset=utf-8')\n self.assertResponseHeaderEquals(rsp, 'content-location', '/.html')\n \n self.assertResponseHeaderIsSet(rsp, 'vary')\n for v in rsp.header('vary'):\n self.assertTrue('Accept-Charset' in v)\n self.assertTrue('Accept' in v)\n \n self.assertNotEquals(rsp.body, '')", "metadata": "root.unused", "header": "['module', '___EOS___']", "index": 66 } ]

[ { "span": "self.assertTrue('entries' in payload)", "start_line": 14, "start_column": 4, "end_line": 14, "end_column": 41 }, { "span": "self.assertTrue('value' in rsp_payload)", "start_line": 57, "start_column": 4, "end_line": 57, "end_column": 43 }, { "span": "self.assertTrue('Accept-Charset' in v)", "start_line": 80, "start_column": 4, "end_line": 80, "end_column": 42 }, { "span": "self.assertTrue('Accept' in v)", "start_line": 81, "start_column": 4, "end_line": 81, "end_column": 34 } ]

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[ { "content": " def _option_required(self, key):\n conf = S3_CONF.copy()\n del conf[key]\n\n try:\n self.store = Store(test_utils.TestConfigOpts(conf))\n return self.store.add == self.store.add_disabled\n except:\n return False\n return False", "metadata": "root.TestStore._option_required", "header": "['class', 'TestStore', '(', 'unittest', '.', 'TestCase', ')', ':', '___EOS___']", "index": 290 } ]

[ { "span": "except:", "start_line": 297, "start_column": 8, "end_line": 297, "end_column": 15 } ]

[]

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[ { "content": "def process_interface_files(infile, interfaces):\n \"\"\"\n Write out a new files for interfaces\n \"\"\"\n\n # Enumerate all of the existing ifcfg-* files\n remove_files = set()\n for filepath in glob.glob(NETCONFIG_DIR + \"/ifcfg-*\"):\n if '.' not in filepath:\n remove_files.add(filepath)\n for filename in glob.glob(NETCONFIG_DIR + \"/route-*\"):\n if '.' not in filepath:\n remove_files.add(filepath)\n\n lo_file = os.path.join(NETCONFIG_DIR, INTERFACE_FILE % 'lo')\n if lo_file in remove_files:\n remove_files.remove(lo_file)\n\n update_files = {}\n\n ipv6 = False\n for ifname, interface in interfaces.iteritems():\n ifaces, route_data = _get_file_data(ifname, interface)\n if interface['ip6s']:\n ipv6 = True\n\n for ifname, data in ifaces:\n filepath = os.path.join(NETCONFIG_DIR, INTERFACE_FILE % ifname)\n update_files[filepath] = data\n if filepath in remove_files:\n remove_files.remove(filepath)\n\n if route_data:\n filepath = os.path.join(NETCONFIG_DIR, ROUTE_FILE % ifname)\n update_files[filepath] = route_data\n if filepath in remove_files:\n remove_files.remove(filepath)\n\n update_files[NETWORK_FILE] = _update_key_value(infile, 'NETWORKING_IPV6',\n ipv6 and 'yes' or 'no')\n\n return update_files, remove_files", "metadata": "root.process_interface_files", "header": "['module', '___EOS___']", "index": 231 } ]

[ { "span": "for filename in glob.glob(NETCONFIG_DIR + \"/route-*\"):", "start_line": 241, "start_column": 4, "end_line": 241, "end_column": 58 } ]

[]

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[ { "content": "from __future__ import unicode_literals\n\nfrom functools import wraps\n\nfrom django.core.exceptions import PermissionDenied\n\nfrom rolepermissions.roles import RolesManager\nfrom rolepermissions.verifications import has_role, has_permission\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "def has_role_decorator(role):\n def request_decorator(dispatch):\n @wraps(dispatch)\n def wrapper(request, *args, **kwargs):\n user = request.user\n if user.is_authenticated():\n if has_role(user, role):\n return dispatch(request, *args, **kwargs)\n\n raise PermissionDenied\n return wrapper\n return request_decorator", "metadata": "root.has_role_decorator", "header": "['module', '___EOS___']", "index": 10 }, { "content": "def has_permission_decorator(permission_name):\n def request_decorator(dispatch):\n @wraps(dispatch)\n def wrapper(request, *args, **kwargs):\n user = request.user\n if user.is_authenticated():\n if has_permission(user, permission_name):\n return dispatch(request, *args, **kwargs)\n\n raise PermissionDenied\n return wrapper\n return request_decorator", "metadata": "root.has_permission_decorator", "header": "['module', '___EOS___']", "index": 24 } ]

[ { "span": "from rolepermissions.roles import RolesManager", "start_line": 6, "start_column": 0, "end_line": 6, "end_column": 46 } ]

[]

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[ { "content": "def pull_body(environ):\n \"\"\"\n Pulls the body out of the WSGI environment.\n \"\"\"\n\n try:\n content_length = int(environ.get('CONTENT_LENGTH', 0))\n body = environ['wsgi.input'].read(content_length)\n body = body.decode()\n return json.loads(body, strict=False)\n except:\n return {}", "metadata": "root.pull_body", "header": "['module', '___EOS___']", "index": 136 } ]

[ { "span": "except:", "start_line": 146, "start_column": 4, "end_line": 146, "end_column": 11 } ]

[]

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[ { "content": "from __future__ import unicode_literals\n# Ensure 'assert_raises' context manager support for Python 2.6\nimport tests.backport_assert_raises\nfrom nose.tools import assert_raises\n\nimport re\n\nimport boto\nfrom boto.exception import EC2ResponseError\n\nimport sure # noqa\n\nfrom moto import mock_ec2\n\n\nVPC_CIDR=\"10.0.0.0/16\"\nBAD_VPC=\"vpc-deadbeef\"\nBAD_IGW=\"igw-deadbeef\"\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@mock_ec2\ndef test_igw_create():\n \"\"\" internet gateway create \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n\n conn.get_all_internet_gateways().should.have.length_of(0)\n igw = conn.create_internet_gateway()\n conn.get_all_internet_gateways().should.have.length_of(1)\n igw.id.should.match(r'igw-[0-9a-f]+')\n\n igw = conn.get_all_internet_gateways()[0]\n igw.attachments.should.have.length_of(0)", "metadata": "root.test_igw_create", "header": "['module', '___EOS___']", "index": 19 }, { "content": "@mock_ec2\ndef test_igw_attach():\n \"\"\" internet gateway attach \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw.id, vpc.id)\n\n igw = conn.get_all_internet_gateways()[0]\n igw.attachments[0].vpc_id.should.be.equal(vpc.id)", "metadata": "root.test_igw_attach", "header": "['module', '___EOS___']", "index": 32 }, { "content": "@mock_ec2\ndef test_igw_attach_bad_vpc():\n \"\"\" internet gateway fail to attach w/ bad vpc \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n\n with assert_raises(EC2ResponseError) as cm:\n conn.attach_internet_gateway(igw.id, BAD_VPC)\n cm.exception.code.should.equal('InvalidVpcID.NotFound')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_attach_bad_vpc", "header": "['module', '___EOS___']", "index": 43 }, { "content": "@mock_ec2\ndef test_igw_attach_twice():\n \"\"\" internet gateway fail to attach twice \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc1 = conn.create_vpc(VPC_CIDR)\n vpc2 = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw.id, vpc1.id)\n\n with assert_raises(EC2ResponseError) as cm:\n conn.attach_internet_gateway(igw.id, vpc2.id)\n cm.exception.code.should.equal('Resource.AlreadyAssociated')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_attach_twice", "header": "['module', '___EOS___']", "index": 55 }, { "content": "@mock_ec2\ndef test_igw_detach():\n \"\"\" internet gateway detach\"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw.id, vpc.id)\n conn.detach_internet_gateway(igw.id, vpc.id)\n igw = conn.get_all_internet_gateways()[0]\n igw.attachments.should.have.length_of(0)", "metadata": "root.test_igw_detach", "header": "['module', '___EOS___']", "index": 70 }, { "content": "@mock_ec2\ndef test_igw_detach_wrong_vpc():\n \"\"\" internet gateway fail to detach w/ wrong vpc \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc1 = conn.create_vpc(VPC_CIDR)\n vpc2 = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw.id, vpc1.id)\n\n with assert_raises(EC2ResponseError) as cm:\n conn.detach_internet_gateway(igw.id, vpc2.id)\n cm.exception.code.should.equal('Gateway.NotAttached')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_detach_wrong_vpc", "header": "['module', '___EOS___']", "index": 81 }, { "content": "@mock_ec2\ndef test_igw_detach_invalid_vpc():\n \"\"\" internet gateway fail to detach w/ invalid vpc \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw.id, vpc.id)\n\n with assert_raises(EC2ResponseError) as cm:\n conn.detach_internet_gateway(igw.id, BAD_VPC)\n cm.exception.code.should.equal('Gateway.NotAttached')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_detach_invalid_vpc", "header": "['module', '___EOS___']", "index": 96 }, { "content": "@mock_ec2\ndef test_igw_detach_unattached():\n \"\"\" internet gateway fail to detach unattached \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n\n with assert_raises(EC2ResponseError) as cm:\n conn.detach_internet_gateway(igw.id, vpc.id)\n cm.exception.code.should.equal('Gateway.NotAttached')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_detach_unattached", "header": "['module', '___EOS___']", "index": 110 }, { "content": "@mock_ec2\ndef test_igw_delete():\n \"\"\" internet gateway delete\"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n vpc = conn.create_vpc(VPC_CIDR)\n conn.get_all_internet_gateways().should.have.length_of(0)\n igw = conn.create_internet_gateway()\n conn.get_all_internet_gateways().should.have.length_of(1)\n conn.delete_internet_gateway(igw.id)\n conn.get_all_internet_gateways().should.have.length_of(0)", "metadata": "root.test_igw_delete", "header": "['module', '___EOS___']", "index": 123 }, { "content": "@mock_ec2\ndef test_igw_delete_attached():\n \"\"\" internet gateway fail to delete attached \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw.id, vpc.id)\n\n with assert_raises(EC2ResponseError) as cm:\n conn.delete_internet_gateway(igw.id)\n cm.exception.code.should.equal('DependencyViolation')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_delete_attached", "header": "['module', '___EOS___']", "index": 134 }, { "content": "@mock_ec2\ndef test_igw_desribe():\n \"\"\" internet gateway fetch by id \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n igw = conn.create_internet_gateway()\n igw_by_search = conn.get_all_internet_gateways([igw.id])[0]\n igw.id.should.equal(igw_by_search.id)", "metadata": "root.test_igw_desribe", "header": "['module', '___EOS___']", "index": 148 }, { "content": "@mock_ec2\ndef test_igw_desribe_bad_id():\n \"\"\" internet gateway fail to fetch by bad id \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n with assert_raises(EC2ResponseError) as cm:\n conn.get_all_internet_gateways([BAD_IGW])\n cm.exception.code.should.equal('InvalidInternetGatewayID.NotFound')\n cm.exception.status.should.equal(400)\n cm.exception.request_id.should_not.be.none", "metadata": "root.test_igw_desribe_bad_id", "header": "['module', '___EOS___']", "index": 156 }, { "content": "@mock_ec2\ndef test_igw_filter_by_vpc_id():\n \"\"\" internet gateway filter by vpc id \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n\n igw1 = conn.create_internet_gateway()\n igw2 = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw1.id, vpc.id)\n\n result = conn.get_all_internet_gateways(filters={\"attachment.vpc-id\": vpc.id})\n result.should.have.length_of(1)\n result[0].id.should.equal(igw1.id)", "metadata": "root.test_igw_filter_by_vpc_id", "header": "['module', '___EOS___']", "index": 167 }, { "content": "@mock_ec2\ndef test_igw_filter_by_tags():\n \"\"\" internet gateway filter by vpc id \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n\n igw1 = conn.create_internet_gateway()\n igw2 = conn.create_internet_gateway()\n igw1.add_tag(\"tests\", \"yes\")\n\n result = conn.get_all_internet_gateways(filters={\"tag:tests\": \"yes\"})\n result.should.have.length_of(1)\n result[0].id.should.equal(igw1.id)", "metadata": "root.test_igw_filter_by_tags", "header": "['module', '___EOS___']", "index": 182 }, { "content": "@mock_ec2\ndef test_igw_filter_by_internet_gateway_id():\n \"\"\" internet gateway filter by internet gateway id \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n\n igw1 = conn.create_internet_gateway()\n igw2 = conn.create_internet_gateway()\n\n result = conn.get_all_internet_gateways(filters={\"internet-gateway-id\": igw1.id})\n result.should.have.length_of(1)\n result[0].id.should.equal(igw1.id)", "metadata": "root.test_igw_filter_by_internet_gateway_id", "header": "['module', '___EOS___']", "index": 196 }, { "content": "@mock_ec2\ndef test_igw_filter_by_attachment_state():\n \"\"\" internet gateway filter by attachment state \"\"\"\n conn = boto.connect_vpc('the_key', 'the_secret')\n\n igw1 = conn.create_internet_gateway()\n igw2 = conn.create_internet_gateway()\n vpc = conn.create_vpc(VPC_CIDR)\n conn.attach_internet_gateway(igw1.id, vpc.id)\n\n result = conn.get_all_internet_gateways(filters={\"attachment.state\": \"available\"})\n result.should.have.length_of(1)\n result[0].id.should.equal(igw1.id)", "metadata": "root.test_igw_filter_by_attachment_state", "header": "['module', '___EOS___']", "index": 209 } ]

[ { "span": "import tests.backport_assert_raises", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 35 }, { "span": "import re", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 9 } ]

[]

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[ { "content": "# Copyright 2014 Open Connectome Project (http://openconnecto.me)\n# \n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n# \n# http://www.apache.org/licenses/LICENSE-2.0\n# \n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport argparse\nimport cStringIO\nimport urllib2\nimport sys\nimport zlib\nimport os\nimport re\n#from PIL import Image\nimport cv2\nimport Image\nimport MySQLdb\n\nimport numpy as np\n\nsys.path += [os.path.abspath('../../django')]\nimport OCP.settings\nos.environ['DJANGO_SETTINGS_MODULE'] = 'OCP.settings'\nfrom django.conf import settings\n\nimport ocpcarest\nimport zindex\nimport imagecube\n\n\n\n\n\nif __name__ == \"__main__\":\n main()\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class MitraIngest:\n\n\n\n\n\n\n", "metadata": "root.MitraIngest", "header": "['module', '___EOS___']", "index": 37 }, { "content": " def __init__(self, token, path, resolution, channel):\n\n self.path = path\n self.resolution = resolution\n\n [ self.db, self.proj, self.projdb ] = ocpcarest.loadDBProj ( token )\n\n (self.xcubedim, self.ycubedim, self.zcubedim) = self.proj.datasetcfg.cubedim[ resolution ]\n (self.startslice, self.endslice) = self.proj.datasetcfg.slicerange\n self.batchsz = self.zcubedim\n \n self.channel = channel\n\n self._ximgsz = self.proj.datasetcfg.imagesz[resolution][0]\n self._yimgsz = self.proj.datasetcfg.imagesz[resolution][1]\n\n self.cursor = self.db.conn.cursor()", "metadata": "root.MitraIngest.__init__", "header": "['class', 'MitraIngest', ':', '___EOS___']", "index": 39 }, { "content": " def label ( self, chanid, chanstr ):\n \"\"\" Write the channel label/string associated with the channel identifier\"\"\"\n\n sql = 'INSERT INTO channels VALUES ( \\'{}\\', {} )'.format( chanstr, chanid )\n try:\n print sql\n #self.cursor.execute ( sql )\n except MySQLdb.Error, e:\n print (\"Error updating channels table: %d: %s. sql=%s\" % (e.args[0], e.args[1], sql))\n raise ", "metadata": "root.MitraIngest.label", "header": "['class', 'MitraIngest', ':', '___EOS___']", "index": 58 }, { "content": " def ingest( self ):\n\n channel = 0\n NAME = [ \"Red\", \"Green\", \"Blue\" ]\n import pdb; pdb.set_trace()\n\n # for each channel\n for x in range(self.channel):\n \n # label by RGB Channel\n self.label ( x, NAME[x] )\n \n # for each slice\n for sl in range(self.startslice,self.endslice+1,self.batchsz):\n \n imarray = np.zeros ( [self.batchsz,self._yimgsz,self._ximgsz], dtype=np.uint8 )\n\n for b in range ( self.batchsz ):\n\n if ( sl + b <= self.endslice ):\n\n # raw data\n filenm = self.path + '{:0>4}'.format(sl+b) + '.tiff'\n\n # load the image and check the dimension\n try:\n print \"Opening filename: \" + filenm\n img = Image.open(filenm, 'r')\n imgdata = np.asarray ( img )\n imarray[(sl+b-self.startslice)%self.batchsz,0:imgdata.shape[0],0:imgdata.shape[1]] = imgdata[:,:,x]\n except IOError, e:\n print e\n \n # ingset any remaining slices\n self.upload( channel, sl, imarray )", "metadata": "root.MitraIngest.ingest", "header": "['class', 'MitraIngest', ':', '___EOS___']", "index": 70 }, { "content": " def upload ( self, channel, sl, imarray ):\n \"\"\"Transfer the array to the database\"\"\"\n\n # and the limits of iteration\n xlimit = (self._ximgsz-1) / self.xcubedim + 1\n ylimit = (self._yimgsz-1) / self.ycubedim + 1\n\n for y in range(ylimit):\n for x in range(xlimit):\n\n # each batch is the last slice in a cube\n z = sl/self.zcubedim\n\n # zindex\n key = zindex.XYZMorton ( [x,y,z] )\n\n # Create a channel cube\n cube = imagecube.ImageCube8 ( [self.xcubedim, self.ycubedim, self.zcubedim] )\n\n # data for this key\n cube.data = imarray[:,y*self.ycubedim:(y+1)*self.ycubedim,x*self.xcubedim:(x+1)*self.xcubedim]\n # compress the cube\n npz = cube.toNPZ ()\n\n # add the cube to the database\n sql = \"INSERT INTO \" + self.proj.getTable(self.resolution) + \"(channel, zindex, cube) VALUES (%s, %s, %s)\"\n try:\n print sql\n #self.cursor.execute ( sql, (channel, key, npz))\n except MySQLdb.Error, e:\n print (\"Error updating data cube: %d: %s. sql=%s\" % (e.args[0], e.args[1], sql))\n raise \n\n self.db.conn.commit()", "metadata": "root.MitraIngest.upload", "header": "['class', 'MitraIngest', ':', '___EOS___']", "index": 107 }, { "content": "def main():\n\n parser = argparse.ArgumentParser(description='Ingest a multi-channel tiff stack.')\n parser.add_argument('token', action=\"store\", help='Token for the project' )\n parser.add_argument('path', action=\"store\", help='Directory for the image files' )\n parser.add_argument('resolution', type=int, action=\"store\", help='Resolution of data' )\n parser.add_argument('channel', type=int, action=\"store\", help='Number of Channels' )\n\n result = parser.parse_args()\n\n mit = MitraIngest( result.token, result.path, result.resolution, result.channel )\n mit.ingest()", "metadata": "root.main", "header": "['module', '___EOS___']", "index": 143 } ]

[ { "span": "import cStringIO", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 16 }, { "span": "import urllib2", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 14 }, { "span": "import zlib", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 11 }, { "span": "import re", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 9 }, { "span": "import cv2", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 10 }, { "span": "import OCP.settings", "start_line": 29, "start_column": 0, "end_line": 29, "end_column": 19 }, { "span": "from django.conf import settings", "start_line": 31, "start_column": 0, "end_line": 31, "end_column": 32 } ]

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[ { "content": "# Copyright 2012 Viewfinder Inc. All Rights Reserved.\n\n\"\"\"UserPost relation.\n\nBy default, users have a relationship with photos that are contained\nwithin viewpoints they follow. By default, all photos contained in\nnon-public viewpoints are shown as part of the user's personal\ncollection. However, the user may want to hide certain of these photos\nfrom view. Inversely, the user may want to show public photos in his\npersonal view. This relation allows these kinds of per-user\ncustomization of photos.\n\nEach photo can be stamped with \"labels\" which describe the user-\nspecific customizations made to that photo. The name of each label\nis chosen so that \"is <name>\" makes sense.\n\n 'removed': the photo should not be shown in the user's personal\n collection, and will ultimately deleted from the\n server if no other references to it are held.\n\"\"\"\n\n__author__ = 'andy@emailscrubbed.com (Andy Kimball)'\n\nimport logging\nimport time\n\nfrom functools import partial\nfrom tornado import gen\nfrom viewfinder.backend.db import vf_schema\nfrom viewfinder.backend.db.base import DBObject\nfrom viewfinder.backend.db.range_base import DBRangeObject\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "@DBObject.map_table_attributes\nclass UserPost(DBRangeObject):\n \"\"\"UserPost data object.\"\"\"\n __slots__ = []\n\n _table = DBObject._schema.GetTable(vf_schema.USER_POST)\n\n HIDDEN = 'hidden'\n", "metadata": "root.UserPost", "header": "['module', '___EOS___']", "index": 32 }, { "content": " def IsHidden(self):\n \"\"\"Returns true if the photo has been hidden by the user so that it will not show in the\n personal library or conversation feed.\n \"\"\"\n return UserPost.HIDDEN in self.labels", "metadata": "root.UserPost.IsHidden", "header": "['class', 'UserPost', '(', 'DBRangeObject', ')', ':', '___EOS___']", "index": 41 } ]

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[ { "content": "\t\nimport chainer.functions as F\nimport chainer.links as L\nfrom chainer import Variable\nfrom chainer.links import caffe\nfrom chainer import computational_graph as c\nfrom deel.tensor import *\nfrom deel.network import *\nimport copy\n\nfrom deel import *\nimport deel.network\nimport chainer\nimport json\nimport os\nimport multiprocessing\nimport threading\nimport time\nimport six\nimport numpy as np\nimport os.path\nfrom PIL import Image\nfrom six.moves import queue\nimport pickle\nimport hashlib\nimport datetime\nimport sys\nimport random\n\n", "metadata": "root", "header": "['module', '___EOS___']", "index": 0 }, { "content": "class AlexNet(ImageNet):\n\n\t\t\t\t\n\n\n\n\t\t\t\t\n\n", "metadata": "root.AlexNet", "header": "['module', '___EOS___']", "index": 29 }, { "content": "\tdef __init__(self, model='bvlc_alexnet.caffemodel',mean='misc/ilsvrc_2012_mean.npy',labels='misc/labels.txt',optimizer=None):\n\t\tsuper(AlexNet,self).__init__('AlexNet',in_size=227)\n\n\n\t\tself.func = LoadCaffeModel(model)\n\t\tself.labels = np.loadtxt(labels, str, delimiter=\"\\t\")\n\n\t\tif Deel.gpu >= 0:\n\t\t\tcuda.check_cuda_available()\n\n\n\t\tif Deel.gpu >= 0:\n\t\t\tcuda.get_device(self.gpu).use()\n\t\t\tself.func.to_gpu()\n\n\t\t#ImageNet.mean_image = np.load(mean)\n\t\tmean_image = np.load(mean)\n\t\tImageNet.mean_image=mean_image\n\t\t\n\t\tcropwidth = 256 - self.in_size\n\t\tstart = cropwidth // 2\n\t\tstop = start + self.in_size\n\t\tself.mean_image = mean_image[:, start:stop, start:stop].copy()\n\t\t#del self.func.layers[15:23] \n\t\t#self.outname = 'pool5'\n\n\t\tself.batchsize = 1\n\t\tself.x_batch = np.ndarray((self.batchsize, 3, self.in_size, self.in_size), dtype=np.float32)", "metadata": "root.AlexNet.__init__", "header": "['class', 'AlexNet', '(', 'ImageNet', ')', ':', '___EOS___']", "index": 30 }, { "content": "\tdef forward(self, x,layer='fc8'):\n\t\ty, = self.func(inputs={'data': x}, outputs=[layer], train=False)\n\t\treturn y", "metadata": "root.AlexNet.forward", "header": "['class', 'AlexNet', '(', 'ImageNet', ')', ':', '___EOS___']", "index": 59 }, { "content": "\tdef predict(self, x,layer='fc8'):\n\t\ty, = self.func(inputs={'data': x}, outputs=[layer], train=False)\n\t\treturn F.softmax(y)", "metadata": "root.AlexNet.predict", "header": "['class', 'AlexNet', '(', 'ImageNet', ')', ':', '___EOS___']", "index": 63 }, { "content": "\tdef classify(self,x=None):\n\t\tif x is None:\n\t\t\tx=Tensor.context\n\n\t\tif not isinstance(x,ImageTensor):\n\t\t\tx=self.Input(x)\n\n\t\t_x = Variable(x.value, volatile=True)\n\t\tresult = self.predict(_x)\n\t\tresult = Variable(result.data) #Unchain \n\t\tt = ChainerTensor(result)\n\t\tt.owner=self\n\t\tt.use()\n\n\t\treturn t", "metadata": "root.AlexNet.classify", "header": "['class', 'AlexNet', '(', 'ImageNet', ')', ':', '___EOS___']", "index": 68 }, { "content": "\tdef layerDim(self, layer='fc8'):\n\t\timage = self.Input('deel.png').value\n\t\tself.x_batch[0] = image\n\t\txp = Deel.xp\n\t\tx_data = xp.asarray(self.x_batch)\n\t\tx = chainer.Variable(x_data, volatile=True)\n\n\t\ty, = self.func(inputs={'data': x}, outputs=[layer], train=False)\n\n\t\treturn y.data.shape", "metadata": "root.AlexNet.layerDim", "header": "['class', 'AlexNet', '(', 'ImageNet', ')', ':', '___EOS___']", "index": 84 }, { "content": "\tdef feature(self, x,layer=u'pool5'):\n\t\tif x is None:\n\t\t\tx=Tensor.context\n\t\tif not isinstance(x,ImageTensor):\n\t\t\tx=self.Input(x)\n\n\t\timage = x.value\n\n\t\tself.x_batch[0] = image\n\t\txp = Deel.xp\n\t\tx_data = xp.asarray(self.x_batch)\n\n\t\tif Deel.gpu >= 0:\n\t\t\tx_data=cuda.to_gpu(x_data)\n\t\t\n\t\tx = chainer.Variable(x_data, volatile=True)\n\t\tscore = self.forward(x,layer=layer)\n\n\t\tif Deel.gpu >= 0:\n\t\t\tscore=cuda.to_cpu(score.data)\n\t\t\tdim = getDim(score.shape)\n\t\t\tscore = score.reshape(dim)\n\t\telse:\n\t\t\tdim = getDim(score.data.shape)\n\t\t\tscore = score.data.reshape(dim)\n\t\t\n\t\tscore = chainer.Variable(score*255.0, volatile=True)\n\n\t\tt = ChainerTensor(score)\n\t\tt.owner=self\n\t\tt.use()\n\n\n\t\treturn t", "metadata": "root.AlexNet.feature", "header": "['class', 'AlexNet', '(', 'ImageNet', ')', ':', '___EOS___']", "index": 97 } ]

[ { "span": "import chainer.links as L", "start_line": 2, "start_column": 0, "end_line": 2, "end_column": 25 }, { "span": "from chainer.links import caffe", "start_line": 4, "start_column": 0, "end_line": 4, "end_column": 31 }, { "span": "from chainer import computational_graph as c", "start_line": 5, "start_column": 0, "end_line": 5, "end_column": 44 }, { "span": "import copy", "start_line": 8, "start_column": 0, "end_line": 8, "end_column": 11 }, { "span": "import deel.network", "start_line": 11, "start_column": 0, "end_line": 11, "end_column": 19 }, { "span": "import json", "start_line": 13, "start_column": 0, "end_line": 13, "end_column": 11 }, { "span": "import os", "start_line": 14, "start_column": 0, "end_line": 14, "end_column": 9 }, { "span": "import multiprocessing", "start_line": 15, "start_column": 0, "end_line": 15, "end_column": 22 }, { "span": "import threading", "start_line": 16, "start_column": 0, "end_line": 16, "end_column": 16 }, { "span": "import time", "start_line": 17, "start_column": 0, "end_line": 17, "end_column": 11 }, { "span": "import six", "start_line": 18, "start_column": 0, "end_line": 18, "end_column": 10 }, { "span": "import os.path", "start_line": 20, "start_column": 0, "end_line": 20, "end_column": 14 }, { "span": "from PIL import Image", "start_line": 21, "start_column": 0, "end_line": 21, "end_column": 21 }, { "span": "from six.moves import queue", "start_line": 22, "start_column": 0, "end_line": 22, "end_column": 27 }, { "span": "import pickle", "start_line": 23, "start_column": 0, "end_line": 23, "end_column": 13 }, { "span": "import hashlib", "start_line": 24, "start_column": 0, "end_line": 24, "end_column": 14 }, { "span": "import datetime", "start_line": 25, "start_column": 0, "end_line": 25, "end_column": 15 }, { "span": "import sys", "start_line": 26, "start_column": 0, "end_line": 26, "end_column": 10 }, { "span": "import random", "start_line": 27, "start_column": 0, "end_line": 27, "end_column": 13 } ]

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[ { "content": " def test_invalid_extensions(self):\n app = openstack.APIRouterV11()\n ext_midware = extensions.ExtensionMiddleware(app)\n ext_mgr = ext_midware.ext_mgr\n ext_mgr.add_extension(InvalidExtension())\n self.assertTrue('FOXNSOX' in ext_mgr.extensions)\n self.assertTrue('THIRD' not in ext_mgr.extensions)", "metadata": "root.ExtensionManagerTest.test_invalid_extensions", "header": "['class', 'ExtensionManagerTest', '(', 'test', '.', 'TestCase', ')', ':', '___EOS___']", "index": 266 } ]

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[ { "content": " def test_origin_compares_equal(self):\n a = self.engine.get_template('index.html')\n b = self.engine.get_template('index.html')\n self.assertEqual(a.origin, b.origin)\n self.assertTrue(a.origin == b.origin)\n self.assertFalse(a.origin != b.origin)", "metadata": "root.OriginTestCase.test_origin_compares_equal", "header": "['class', 'OriginTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 11 }, { "content": " def test_origin_compares_not_equal(self):\n a = self.engine.get_template('first/test.html')\n b = self.engine.get_template('second/test.html')\n self.assertNotEqual(a.origin, b.origin)\n self.assertFalse(a.origin == b.origin)\n self.assertTrue(a.origin != b.origin)", "metadata": "root.OriginTestCase.test_origin_compares_not_equal", "header": "['class', 'OriginTestCase', '(', 'TestCase', ')', ':', '___EOS___']", "index": 18 } ]

[ { "span": "self.assertTrue(a.origin == b.origin)", "start_line": 15, "start_column": 8, "end_line": 15, "end_column": 45 }, { "span": "self.assertFalse(a.origin != b.origin)", "start_line": 16, "start_column": 8, "end_line": 16, "end_column": 46 }, { "span": "self.assertFalse(a.origin == b.origin)", "start_line": 22, "start_column": 8, "end_line": 22, "end_column": 46 }, { "span": "self.assertTrue(a.origin != b.origin)", "start_line": 23, "start_column": 8, "end_line": 23, "end_column": 45 } ]

[]

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[ { "content": "def massMessage(page,message):\n import random\n \n massLoginTest()\n \n if len(cookieArray) == 0:\n print 'First you must create accounts: option 1) '\n return\n \n pageID = getUserID(page)\n \n for i in range(len(cookieArray)):\n try:\n cj._cookies = cookieArray[i]\n c_user = getC_user()\n print str(c_user)+'\\n'\n \n numero = ''\n numero2 = ''\n for i in range(10):\n numero += str(random.randrange(0,10))\n for i in range(10):\n numero2 += str(random.randrange(0,10))\n \n fb_dtsg = set_dtsg()\n if (fb_dtsg == 0):\n print 'ERROR MOTHER FUCKER -_-'\n arguments = {\n 'message_batch[0][action_type]' : 'ma-type:user-generated-message',\n 'message_batch[0][author]' : 'fbid:'+c_user,\n 'message_batch[0][timestamp]' : '1401416840784',\n 'message_batch[0][timestamp_absolute]' : 'Today',\n 'message_batch[0][timestamp_relative]' : '11:27pm',\n 'message_batch[0][timestamp_time_passed]' : '0',\n 'message_batch[0][is_unread]' : 'false',\n 'message_batch[0][is_cleared]' : 'false',\n 'message_batch[0][is_forward]' : 'false',\n 'message_batch[0][is_filtered_content]' : 'false',\n 'message_batch[0][is_spoof_warning]' : 'false',\n 'message_batch[0][source]' : 'source:titan:web',\n 'message_batch[0][body]' : message,\n 'message_batch[0][has_attachment]' : 'false',\n 'message_batch[0][html_body]' : 'false',\n 'message_batch[0][specific_to_list][0]' : 'fbid:'+pageID,\n 'message_batch[0][specific_to_list][1]' : 'fbid:'+c_user,\n 'message_batch[0][force_sms]' : 'true',\n 'message_batch[0][ui_push_phase]' : 'V3',\n 'message_batch[0][status]' : '0',\n 'message_batch[0][message_id]' : '<1401416840784:'+numero+'-'+numero2+'@mail.projektitan.com>',\n '''<1401416840784:554304545-874733751@mail.projektitan.com>','''\n 'message_batch[0][client_thread_id]' : 'user:'+pageID,\n 'client' : 'mercury',\n '__user' : c_user,\n '__a' : '1',\n '__dyn' : '7n8ajEAMCBynUKt2u6aOGeExEW9ACxO4pbGA8AGGBy6C-Cu6popDFp4qu',\n '__req' : 'q',\n 'fb_dtsg' : fb_dtsg,\n 'ttstamp' : '26581697273111715585898748',\n '__rev' : '1268876'\n }\n \n datos = urlencode(arguments)\n response = br.open('https://www.facebook.com/ajax/mercury/send_messages.php',datos)\n \n if globalLogging:\n logs(response.read())\n \n except mechanize.HTTPError as e:\n print e.code\n except mechanize.URLError as e:\n print e.reason.args \n \n except:\n logs('Error en el modulo de massMessage()')\n print 'Error en el modulo de massMessage()\\n'", "metadata": "root.massMessage", "header": "['module', '___EOS___']", "index": 2587 } ]

[ { "span": "for i in range(10):", "start_line": 2606, "start_column": 12, "end_line": 2606, "end_column": 31 }, { "span": "for i in range(10):", "start_line": 2608, "start_column": 12, "end_line": 2608, "end_column": 31 } ]

[ { "span": "for i in range(len(cookieArray)):", "start_line": 2598, "start_column": 4, "end_line": 2598, "end_column": 37 } ]

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