Module Expr Str Import alias ImportFrom alias alias Import alias Import alias ImportFrom alias alias Import alias ClassDef bases AttributeLoad NameLoad attr body FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad SubscriptLoad Call AttributeLoad NameLoad attr Index Num Expr Call AttributeLoad AttributeLoad NameLoad attr attr Call AttributeLoad NameLoad attr SubscriptLoad NameLoad Slice Num Num Call AttributeLoad NameLoad attr SubscriptLoad NameLoad Slice Num Num Num decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr Str Assign NameStore ListLoad Num Num Num Num Num Num Assign NameStore Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Call AttributeLoad NameLoad attr Num decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore ListLoad Num Num Num Num Num Assign NameStore ListLoad Num Num Num Num Num Expr Call AttributeLoad NameLoad attr Num Call NameLoad Call AttributeLoad NameLoad attr NameLoad Call AttributeLoad NameLoad attr NameLoad Num decorator_list decorator_list If CompareEq NameLoad Str body Expr Call AttributeLoad NameLoad attr
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Created on 08/07/2014

@author: victor
 N/A unittest pyproct.driver.handlers.matrix.test.data.dihedral_angles_pdb_data pdb1 expected_dihedrals N/A prody N/A StringIO pyproct.driver.handlers.matrix.dihedralRMSDMatrixCalculator DihedralRMSDMatrixCalculator rmsd N/A numpy Test N/A N/A unittest TestCase N/A test_get_dihedrals N/A N/A self N/A N/A N/A input N/A N/A StringIO StringIO pdb1 N/A pdb_structure N/A N/A prody parsePDBStream input N/A dihedrals N/A N/A DihedralRMSDMatrixCalculator calculateDihedralsForCoordset pdb_structure N/A N/A N/A pdb_structure getCoordsets N/A 0 N/A N/A N/A N/A numpy testing assert_array_almost_equal N/A N/A numpy array N/A expected_dihedrals N/A 1 -1 N/A N/A numpy array N/A dihedrals N/A 2 -2 2 N/A test_calc_matrix N/A N/A self N/A N/A N/A pdb_structure N/A N/A prody parsePDB data/3_models.pdb N/A expected N/A 35.01002624 47.60315215 88.64981522 32.90471145 87.13023459 85.76106107 N/A product_matrix N/A N/A DihedralRMSDMatrixCalculator build pdb_structure N/A N/A N/A N/A numpy testing assert_almost_equal expected N/A N/A product_matrix get_data 8 N/A test_rmsd N/A N/A self N/A N/A N/A a N/A 1 2 3 4 5 N/A b N/A 10 20 30 40 50 N/A N/A N/A self assertAlmostEqual 29.8496231132 N/A rmsd N/A N/A numpy array a N/A N/A numpy array b 8 N/A N/A N/A N/A __name__ __main__ N/A N/A N/A N/A unittest main