Module Expr Str Import alias identifier Import alias identifier Import alias ImportFrom alias Import alias Import alias identifier ImportFrom alias Assign NameStore Call AttributeLoad NameLoad attr NameLoad ClassDef bases NameLoad body Expr Str FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults Str Str NameLoad NameLoad kwarg body Expr Call AttributeLoad Call NameLoad attr NameLoad If CompareEq NameLoad Str body Return If CompareEq NameLoad Str body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Str Assign AttributeStore NameLoad attr NameLoad Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr NameLoad Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Index Str Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Index Str Expr Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr Num AttributeLoad NameLoad attr Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr NameLoad keyword NameLoad Expr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Index Str NameLoad decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr Num AttributeLoad NameLoad attr Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr NameLoad keyword NameLoad Expr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Index Str NameLoad decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr ListLoad keyword NameLoad Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign NameStore Call AttributeLoad NameLoad attr If CompareEq SubscriptLoad NameLoad Index Str ListLoad body Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr orelse Assign NameStore Call AttributeLoad NameLoad attr Assign NameStore Call AttributeLoad NameLoad attr Assign NameStore ListComp SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num comprehension NameStore SubscriptLoad NameLoad Index Str Assign NameStore Call NameLoad ListLoad Call NameLoad ListLoad Num BinOpDiv NameLoad Num Call NameLoad NameLoad For NameStore SubscriptLoad NameLoad Index Str body If CompareLt SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num NameLoad body Assign NameStore Call AttributeLoad NameLoad attr NameLoad Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr NameLoad If CompareGt SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num Num body Assign NameStore Num Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr TupleLoad BinOpSub NameLoad SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num keyword NameLoad For NameStore Call AttributeLoad NameLoad attr body If CompareNotIn NameLoad NameLoad body Assign SubscriptStore AttributeLoad NameLoad attr Index NameLoad NameLoad AugAssignAdd NameStore Num If CompareGt SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num Num body Assign NameStore Num Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr TupleLoad BinOpSub NameLoad SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num keyword NameLoad For NameStore Call AttributeLoad NameLoad attr body If CompareNotIn NameLoad NameLoad body Assign SubscriptStore AttributeLoad NameLoad attr Index NameLoad NameLoad AugAssignAdd NameStore Num TryExcept body If CompareGt SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num Num body Assign NameStore Num Assign NameStore SubscriptLoad AttributeLoad NameLoad attr Index Str Assign SubscriptStore AttributeLoad NameLoad attr Index Str Call AttributeLoad NameLoad attr TupleLoad BinOpSub NameLoad SubscriptLoad Call AttributeLoad NameLoad attr NameLoad Index Num keyword NameLoad For NameStore Call AttributeLoad NameLoad attr body If CompareNotIn NameLoad NameLoad body Assign SubscriptStore SubscriptLoad AttributeLoad NameLoad attr Index Str Index NameLoad SubscriptLoad NameLoad Index NameLoad AugAssignAdd NameStore Num handlers ExceptHandler body Expr Call AttributeLoad NameLoad attr Str Pass Expr Call AttributeLoad NameLoad attr keyword NameLoad decorator_list FunctionDef arguments args NameParam defaults body TryExcept body Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr CompareNotEq SubscriptLoad NameLoad Index Str Num Index Num Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr CompareNotEq SubscriptLoad NameLoad Index Str Num Index Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr CompareEq SubscriptLoad NameLoad Index Str Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr CompareEq SubscriptLoad NameLoad Index Str Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr CompareEq SubscriptLoad NameLoad Index Str Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr CompareEq SubscriptLoad NameLoad Index Str Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr CompareEq SubscriptLoad NameLoad Index Str Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr CompareEq SubscriptLoad NameLoad Index Str Num Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign NameStore NameLoad handlers ExceptHandler body Assign NameStore Call AttributeLoad NameLoad attr ListLoad Assign NameStore Call AttributeLoad NameLoad attr ListLoad Expr Call AttributeLoad NameLoad attr Str Assign NameStore NameLoad Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr ListComp CompareNotIn NameLoad NameLoad comprehension NameStore Call AttributeLoad NameLoad attr Index Num Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr ListComp CompareNotIn NameLoad NameLoad comprehension NameStore Call AttributeLoad NameLoad attr Index Num Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr keyword NameLoad keyword NameLoad keyword NameLoad Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index Str Index SubscriptLoad AttributeLoad NameLoad attr Index NameLoad NameLoad Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index Str Index SubscriptLoad AttributeLoad NameLoad attr Index NameLoad NameLoad Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index Str Index SubscriptLoad AttributeLoad NameLoad attr Index NameLoad NameLoad Expr Call AttributeLoad NameLoad attr keyword Str keyword AttributeLoad AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr attr Expr Call AttributeLoad NameLoad attr keyword Str keyword AttributeLoad AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr attr If NameLoad body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr keyword NameLoad keyword NameLoad keyword NameLoad keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str Assign SubscriptStore NameLoad Index Str Call AttributeLoad NameLoad attr keyword Call AttributeLoad NameLoad attr ListLoad Str Str keyword Str decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore AttributeLoad NameLoad attr If CompareIsNot NameLoad NameLoad body If Call NameLoad NameLoad Call NameLoad ListLoad body For NameStore NameLoad body TryExcept body Assign SubscriptStore NameLoad Index BinOpAdd Str NameLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index BinOpAdd Str NameLoad Index AttributeLoad NameLoad attr handlers ExceptHandler body Expr Call AttributeLoad NameLoad attr BinOpAdd BinOpAdd Str NameLoad Str Pass orelse TryExcept body Assign SubscriptStore NameLoad Index BinOpAdd Str NameLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index BinOpAdd Str NameLoad Index AttributeLoad NameLoad attr handlers ExceptHandler body Expr Call AttributeLoad NameLoad attr BinOpAdd BinOpAdd Str NameLoad Str Pass decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore AttributeLoad NameLoad attr If CompareIsNot NameLoad NameLoad body If Call NameLoad NameLoad Call NameLoad ListLoad body For NameStore NameLoad body TryExcept body Assign SubscriptStore NameLoad Index BinOpAdd Str NameLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index BinOpAdd Str NameLoad Index AttributeLoad NameLoad attr handlers ExceptHandler body Expr Call AttributeLoad NameLoad attr BinOpAdd BinOpAdd Str NameLoad Str Pass orelse TryExcept body Assign SubscriptStore NameLoad Index BinOpAdd Str NameLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index BinOpAdd Str NameLoad Index AttributeLoad NameLoad attr handlers ExceptHandler body Expr Call AttributeLoad NameLoad attr BinOpAdd BinOpAdd Str NameLoad Str Pass decorator_list decorator_list
N/A N/A 
===============================================================================
MatFile: Subclass to import Networks from a Matlab '.mat' file
===============================================================================

 N/A scipy sp N/A scipy.io spio N/A os OpenPNM.Network GenericNetwork N/A OpenPNM.Geometry N/A OpenPNM.Utilities.misc misc OpenPNM.Base logging N/A logger N/A N/A logging getLogger __name__ MatFile N/A GenericNetwork N/A N/A 
    MatFile - constructs a pore network from a perfectly formatted .mat file (MATLAB)
    Create network from Matlab file. Returns OpenPNM.Network.GenericNetwork()
    object. The extra data of 'type' will trigger internal and boundary pores.

    Parameters
    ----------
    filename : string
        filename = 'standard_cubic_5x5x5.mat' (default)
        Name of mat file
    path : string
        path='' (default)
        the full path to the mat file on your computer
        leaving blank searches for the file in the local directory
    xtra_pore_data : list of strings
        xtra_pore_data = ['type', 'shape', 'material']
        any additional props to look for in the dictionary
    xtra_throat_data : list of strings
        xtra_throat_data = ['type', 'shape', 'material']
        any additional props to look for in the dictionary

    Notes
    ------
    Matfiles should include the following variables

    +----------------+------------+----------------------------------+
    | Variable Name  | Value      | Description                      |
    +================+============+==================================+
    | pcoords        | <Npx3>     | physical coordinates, in meters, |
    |                | float      | of pores to be imported          |
    +----------------+------------+----------------------------------+
    | pdiameter      | <Npx1>     | pore diamters, in meters         |
    |                | float      |                                  |
    +----------------+------------+----------------------------------+
    | pvolume        | <Npx1>     | pore volumes, in cubic meters    |
    |                | float      |                                  |
    +----------------+------------+----------------------------------+
    | pnumbering     | <Npx1>     | = 0:1:Np-1                       |
    |                | int        |                                  |
    +----------------+------------+----------------------------------+
    | ptype          | <Npx1>     | (optional) designates surfaces   |
    |                | int        | of pores in network.             |
    +----------------+------------+----------------------------------+
    | tconnections   | <Ntx2>     | pore numbers of the two pores    |
    |                | int        | that each throat connects        |
    +----------------+------------+----------------------------------+
    | tdiameter      | <Ntx1>     | throat diameters, in meters      |
    |                | float      |                                  |
    +----------------+------------+----------------------------------+
    | tnumbering     | <Ntx1>     | = 0:1:Nt-1                       |
    |                | int        |                                  |
    +----------------+------------+----------------------------------+
    | ttype          | <Ntx1>     | (optional) designates surface    |
    |                | int        | throats in network.              |
    +----------------+------------+----------------------------------+
     __init__ N/A N/A self filename path xtra_pore_data xtra_throat_data N/A None None kwargs N/A N/A N/A N/A N/A super __init__ kwargs N/A N/A filename N/A N/A N/A N/A path N/A N/A path N/A N/A N/A os path abspath . N/A N/A self _path path N/A filepath N/A N/A N/A os path join N/A self _path filename N/A N/A self _xtra_pore_data xtra_pore_data N/A N/A self _xtra_throat_data xtra_throat_data N/A N/A self _dictionary N/A N/A spio loadmat filepath N/A N/A self _Np N/A N/A sp size N/A N/A self _dictionary N/A pnumbering N/A N/A self _Nt N/A N/A sp size N/A N/A self _dictionary N/A tnumbering N/A N/A N/A self _add_pores N/A N/A N/A self _add_throats N/A N/A N/A self _remove_disconnected_clusters N/A N/A N/A self _add_xtra_pore_data N/A N/A N/A self _add_xtra_throat_data N/A N/A N/A self _add_geometry N/A _add_pores N/A N/A self N/A N/A N/A Pind N/A N/A sp arange 0 N/A self _Np N/A N/A self N/A pore.all N/A N/A sp ones_like Pind dtype bool N/A N/A N/A logger info Writing pore data N/A N/A self N/A pore.coords N/A N/A sp array N/A N/A self _dictionary N/A pcoords float N/A _add_throats N/A N/A self N/A N/A N/A Tind N/A N/A sp arange 0 N/A self _Nt N/A N/A self N/A throat.all N/A N/A sp ones_like Tind dtype bool N/A N/A N/A logger info Writing throat data N/A N/A self N/A throat.conns N/A N/A sp array N/A N/A self _dictionary N/A tconnections int N/A _remove_disconnected_clusters N/A N/A self N/A N/A N/A bad_pores N/A N/A sp array N/A dtype int N/A N/A self _pore_map N/A N/A self pores N/A N/A self _throat_map N/A N/A self throats N/A health N/A N/A self check_network_health N/A N/A N/A health N/A disconnected_clusters N/A N/A N/A N/A self _throat_map N/A N/A self throats N/A N/A self _pore_map N/A N/A self pores N/A N/A Np N/A N/A self num_pores N/A Nt N/A N/A self num_throats N/A cluster_sizes N/A N/A N/A N/A sp shape x N/A 0 N/A x N/A health N/A disconnected_clusters N/A acceptable_size N/A min N/A N/A min N/A 50 N/A Np 2 N/A max cluster_sizes N/A cluster N/A health N/A disconnected_clusters N/A N/A N/A N/A N/A N/A sp shape cluster N/A 0 acceptable_size N/A N/A bad_pores N/A N/A sp append bad_pores N/A N/A sp ravel cluster N/A bad_throats N/A N/A sp unique N/A N/A self find_neighbor_throats bad_pores N/A N/A N/A N/A N/A sp shape bad_pores N/A 0 0 N/A N/A i 0 N/A N/A self _pore_map N/A N/A sp zeros N/A N/A Np N/A N/A N/A sp shape bad_pores N/A 0 dtype int N/A pore N/A N/A self pores N/A N/A N/A pore bad_pores N/A N/A N/A N/A self _pore_map N/A i pore N/A i 1 N/A N/A N/A N/A N/A sp shape bad_throats N/A 0 0 N/A N/A i 0 N/A N/A self _throat_map N/A N/A sp zeros N/A N/A Nt N/A N/A N/A sp shape bad_throats N/A 0 dtype int N/A throat N/A N/A self throats N/A N/A N/A throat bad_throats N/A N/A N/A N/A self _throat_map N/A i throat N/A i 1 N/A N/A N/A N/A N/A N/A N/A sp shape bad_pores N/A 0 0 N/A N/A i 0 N/A old_transform N/A N/A self _dictionary N/A pname_transform N/A N/A N/A self _dictionary N/A pname_transform N/A N/A sp zeros N/A N/A Np N/A N/A N/A sp shape bad_pores N/A 0 dtype int N/A pore N/A N/A self pores N/A N/A N/A pore bad_pores N/A N/A N/A N/A N/A self _dictionary N/A pname_transform N/A i N/A old_transform N/A pore N/A i 1 N/A N/A N/A N/A N/A N/A logger info Could not update pname_transform. Imported network                              may not have had it. N/A N/A N/A N/A self trim pores bad_pores N/A _add_geometry N/A N/A self N/A N/A N/A N/A N/A boundary_pores N/A N/A N/A sp where N/A N/A self N/A pore.type 0 N/A 0 N/A boundary_throats N/A N/A N/A sp where N/A N/A self N/A throat.type 0 N/A 0 N/A N/A self N/A throat.top N/A N/A sp ravel N/A N/A self N/A throat.type 1 N/A N/A self N/A throat.bottom N/A N/A sp ravel N/A N/A self N/A throat.type 6 N/A N/A self N/A throat.left N/A N/A sp ravel N/A N/A self N/A throat.type 2 N/A N/A self N/A throat.right N/A N/A sp ravel N/A N/A self N/A throat.type 5 N/A N/A self N/A throat.front N/A N/A sp ravel N/A N/A self N/A throat.type 3 N/A N/A self N/A throat.back N/A N/A sp ravel N/A N/A self N/A throat.type 4 N/A N/A self N/A pore.top N/A N/A self tomask pores N/A N/A sp ravel N/A N/A self find_connected_pores N/A N/A self throats top N/A N/A self N/A pore.bottom N/A N/A self tomask N/A N/A sp ravel N/A N/A self find_connected_pores N/A N/A self throats bottom N/A N/A self N/A pore.left N/A N/A self tomask N/A N/A sp ravel N/A N/A self find_connected_pores N/A N/A self throats left N/A N/A self N/A pore.right N/A N/A self tomask N/A N/A sp ravel N/A N/A self find_connected_pores N/A N/A self throats right N/A N/A self N/A pore.front N/A N/A self tomask N/A N/A sp ravel N/A N/A self find_connected_pores N/A N/A self throats front N/A N/A self N/A pore.back N/A N/A self tomask N/A N/A sp ravel N/A N/A self find_connected_pores N/A N/A self throats back N/A add_boundaries True N/A N/A N/A N/A boundary_pores N/A N/A sp array N/A N/A boundary_throats N/A N/A sp array N/A N/A N/A N/A logger info No boundary pores added. N/A add_boundaries False N/A Ps N/A N/A N/A sp where N/A N/A pore boundary_pores N/A pore N/A N/A self pores N/A 0 N/A Ts N/A N/A N/A sp where N/A N/A throat boundary_throats N/A throat N/A N/A self throats N/A 0 N/A geom N/A N/A N/A OpenPNM Geometry GenericGeometry network self pores Ps throats Ts N/A N/A geom N/A pore.volume N/A N/A sp ravel N/A N/A sp array N/A N/A N/A self _dictionary N/A pvolume N/A N/A N/A self _pore_map N/A Ps float N/A N/A geom N/A pore.diameter N/A N/A sp ravel N/A N/A sp array N/A N/A N/A self _dictionary N/A pdiameter N/A N/A N/A self _pore_map N/A Ps float N/A N/A geom N/A throat.diameter N/A N/A sp ravel N/A N/A sp array N/A N/A N/A self _dictionary N/A tdiameter N/A N/A N/A self _throat_map N/A Ts float N/A N/A N/A geom add_model propname pore.area model N/A N/A N/A N/A OpenPNM Geometry models pore_area spherical N/A N/A N/A geom add_model propname throat.area model N/A N/A N/A N/A OpenPNM Geometry models throat_area cylinder N/A add_boundaries N/A N/A boun N/A N/A N/A OpenPNM Geometry Boundary network self pores boundary_pores throats boundary_throats name boundary N/A N/A self N/A pore.top_boundary N/A N/A self tomask pores N/A N/A self pores N/A top boundary mode intersection N/A N/A self N/A pore.bottom_boundary N/A N/A self tomask pores N/A N/A self pores N/A bottom boundary mode intersection N/A N/A self N/A pore.left_boundary N/A N/A self tomask pores N/A N/A self pores N/A left boundary mode intersection N/A N/A self N/A pore.right_boundary N/A N/A self tomask pores N/A N/A self pores N/A right boundary mode intersection N/A N/A self N/A pore.front_boundary N/A N/A self tomask pores N/A N/A self pores N/A front boundary mode intersection N/A N/A self N/A pore.back_boundary N/A N/A self tomask pores N/A N/A self pores N/A back boundary mode intersection N/A N/A self N/A throat.top_boundary N/A N/A self tomask throats N/A N/A self throats N/A top boundary mode intersection N/A N/A self N/A throat.bottom_boundary N/A N/A self tomask throats N/A N/A self throats N/A bottom boundary mode intersection N/A N/A self N/A throat.left_boundary N/A N/A self tomask throats N/A N/A self throats N/A left boundary mode intersection N/A N/A self N/A throat.right_boundary N/A N/A self tomask throats N/A N/A self throats N/A right boundary mode intersection N/A N/A self N/A throat.front_boundary N/A N/A self tomask throats N/A N/A self throats N/A front boundary mode intersection N/A N/A self N/A throat.back_boundary N/A N/A self tomask throats N/A N/A self throats N/A back boundary mode intersection N/A _add_xtra_pore_data N/A N/A self N/A N/A N/A xpdata N/A self _xtra_pore_data N/A N/A xpdata None N/A N/A N/A isinstance xpdata N/A type N/A N/A N/A pdata xpdata N/A N/A N/A N/A N/A self N/A N/A pore. pdata N/A N/A N/A self _dictionary N/A N/A p pdata N/A N/A self _pore_map N/A N/A N/A N/A N/A N/A logger warning N/A N/A Could not add pore data:  pdata  to network N/A N/A N/A N/A N/A N/A self N/A N/A pore. xpdata N/A N/A N/A self _dictionary N/A N/A p xpdata N/A N/A self _pore_map N/A N/A N/A N/A N/A N/A logger warning N/A N/A Could not add pore data:  xpdata  to network N/A N/A _add_xtra_throat_data N/A N/A self N/A N/A N/A xtdata N/A self _xtra_throat_data N/A N/A xtdata None N/A N/A N/A isinstance xtdata N/A type N/A N/A N/A tdata xtdata N/A N/A N/A N/A N/A self N/A N/A throat. tdata N/A N/A N/A self _dictionary N/A N/A t tdata N/A N/A self _throat_map N/A N/A N/A N/A N/A N/A logger warning N/A N/A Could not add throat data:  tdata  to network N/A N/A N/A N/A N/A N/A self N/A N/A throat. xtdata N/A N/A N/A self _dictionary N/A N/A t xtdata N/A N/A self _throat_map N/A N/A N/A N/A N/A N/A logger warning N/A N/A Could not add throat data:  xtdata  to network N/A N/A N/A