Module Import alias ImportFrom alias ImportFrom alias ImportFrom alias ImportFrom alias ClassDef bases NameLoad body Expr Str FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults NameLoad body Assign AttributeStore NameLoad attr NameLoad If UnaryOpNot NameLoad body Assign NameStore Call NameLoad NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Str NameLoad Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign AttributeStore NameLoad attr SubscriptLoad NameLoad Index Str Assign NameStore SubscriptLoad SubscriptLoad NameLoad Index Str Index Str Assign AttributeStore NameLoad attr Call NameLoad NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Assign NameStore AttributeLoad NameLoad attr If Call NameLoad NameLoad AttributeLoad NameLoad attr body Assign NameStore AttributeLoad NameLoad attr Assign NameStore Call AttributeLoad NameLoad attr NameLoad NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr NameLoad AttributeLoad NameLoad attr Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr NameLoad AttributeLoad NameLoad attr keyword Str Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Assign NameStore Call NameLoad NameLoad Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad AttributeLoad NameLoad attr If UnaryOpNot AttributeLoad NameLoad attr body Return TupleLoad Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr ListLoad Assign NameStore Call AttributeLoad NameLoad attr Assign NameStore SubscriptLoad NameLoad Index NameLoad Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr NameLoad Return TupleLoad NameLoad NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam NameParam defaults NameLoad body Expr Str Assign NameStore Call NameLoad NameLoad Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad NameLoad If AttributeLoad NameLoad attr body If CompareIs NameLoad NameLoad body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad NameLoad orelse Assign NameStore Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Assign NameStore Call NameLoad NameLoad Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body If CompareIn NameLoad ListLoad AttributeLoad NameLoad attr body Return AttributeLoad NameLoad attr orelse If CompareIn NameLoad ListLoad AttributeLoad NameLoad attr AttributeLoad NameLoad attr body Return AttributeLoad NameLoad attr orelse If CompareIn NameLoad ListLoad AttributeLoad NameLoad attr AttributeLoad NameLoad attr body Return AttributeLoad NameLoad attr orelse If CompareIn NameLoad ListLoad AttributeLoad NameLoad attr body Return AttributeLoad NameLoad attr orelse Assign NameStore BinOpMod Str NameLoad Raise Call NameLoad NameLoad decorator_list decorator_list Assign NameStore ListLoad Str
N/A N/A os.path action_mapper FileActionMapper action_mapper path_type util PathHelper galaxy.util in_directory PathMapper N/A object N/A N/A  Ties together a FileActionMapper and remote job configuration returned
    by the Pulsar setup method to pre-determine the location of files for staging
    on the remote Pulsar server.

    This is not useful when rewrite_paths (as has traditionally been done with
    the Pulsar) because when doing that the Pulsar determines the paths as files are
    uploaded. When rewrite_paths is disabled however, the destination of files
    needs to be determined prior to transfer so an object of this class can be
    used.
     __init__ N/A N/A self client remote_job_config local_working_directory action_mapper N/A None N/A N/A N/A self local_working_directory local_working_directory N/A N/A action_mapper N/A N/A action_mapper N/A FileActionMapper client N/A N/A self action_mapper action_mapper N/A N/A self input_directory N/A remote_job_config N/A inputs_directory N/A N/A self output_directory N/A remote_job_config N/A outputs_directory N/A N/A self working_directory N/A remote_job_config N/A working_directory N/A N/A self metadata_directory N/A N/A remote_job_config get working_directory None N/A N/A self unstructured_files_directory N/A remote_job_config N/A unstructured_files_directory N/A N/A self config_directory N/A remote_job_config N/A configs_directory N/A separator N/A N/A remote_job_config N/A system_properties N/A separator N/A N/A self path_helper N/A PathHelper separator N/A remote_output_path_rewrite N/A N/A self local_path N/A N/A N/A output_type N/A path_type OUTPUT N/A N/A in_directory local_path N/A self local_working_directory N/A N/A output_type N/A path_type OUTPUT_WORKDIR N/A remote_path N/A N/A self __remote_path_rewrite local_path output_type N/A remote_path N/A remote_input_path_rewrite N/A N/A self local_path N/A N/A N/A remote_path N/A N/A self __remote_path_rewrite local_path N/A path_type INPUT N/A remote_path N/A remote_version_path_rewrite N/A N/A self local_path N/A N/A N/A remote_path N/A N/A self __remote_path_rewrite local_path N/A path_type OUTPUT name COMMAND_VERSION N/A remote_path N/A check_for_arbitrary_rewrite N/A N/A self local_path N/A N/A N/A path N/A str local_path N/A action N/A N/A N/A self action_mapper action path N/A path_type UNSTRUCTURED N/A N/A N/A action staging_needed N/A N/A N/A N/A N/A action path_rewrite N/A self path_helper N/A N/A unique_names N/A N/A action unstructured_map N/A name N/A unique_names N/A path N/A remote_path N/A N/A N/A self path_helper remote_join N/A self unstructured_files_directory name N/A N/A remote_path unique_names N/A __remote_path_rewrite N/A N/A self dataset_path dataset_path_type name N/A None N/A N/A  Return remote path of this file (if staging is required) else None.
         N/A path N/A str dataset_path N/A action N/A N/A N/A self action_mapper action path dataset_path_type N/A N/A action staging_needed N/A N/A N/A name None N/A N/A name N/A N/A N/A os path basename path N/A remote_directory N/A N/A self __remote_directory dataset_path_type N/A remote_path_rewrite N/A N/A N/A self path_helper remote_join remote_directory name N/A N/A remote_path_rewrite N/A N/A action path_rewrite N/A self path_helper N/A remote_path_rewrite N/A __action N/A N/A self dataset_path dataset_path_type N/A N/A N/A path N/A str dataset_path N/A action N/A N/A N/A self action_mapper action path dataset_path_type N/A action N/A __remote_directory N/A N/A self dataset_path_type N/A N/A N/A N/A dataset_path_type N/A N/A path_type OUTPUT N/A N/A N/A self output_directory N/A N/A N/A dataset_path_type N/A N/A path_type METADATA N/A path_type OUTPUT_METADATA N/A N/A N/A self metadata_directory N/A N/A N/A dataset_path_type N/A N/A path_type WORKDIR N/A path_type OUTPUT_WORKDIR N/A N/A N/A self working_directory N/A N/A N/A dataset_path_type N/A N/A path_type INPUT N/A N/A N/A self input_directory N/A N/A message N/A PathMapper cannot handle path type %s dataset_path_type N/A N/A Exception message N/A N/A N/A __all__ N/A PathMapper