Module Import alias ImportFrom alias Import alias ImportFrom alias alias alias alias alias alias alias alias alias alias alias alias ImportFrom alias ImportFrom alias ImportFrom alias alias ClassDef bases NameLoad body Expr Str FunctionDef arguments args NameParam NameParam NameParam defaults NameLoad NameLoad body Expr Str If NameLoad body With Call NameLoad NameLoad Str NameStore body Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr orelse If NameLoad body Assign AttributeStore NameLoad attr NameLoad orelse Raise Call NameLoad Str If CompareIn Str AttributeLoad NameLoad attr body Assign AttributeStore NameLoad attr Call AttributeLoad AttributeLoad NameLoad attr attr Str Str If BoolOpOr CompareIn Str AttributeLoad NameLoad attr CompareIn Str AttributeLoad NameLoad attr body Assign AttributeStore NameLoad attr Call AttributeLoad Call AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr Assign TupleStore AttributeStore NameLoad attr AttributeStore NameLoad attr AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign TupleStore AttributeStore NameLoad attr AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call NameLoad BinOpAdd BinOpAdd NameLoad Str Str Assign NameStore Call NameLoad keyword NameLoad keyword ListLoad Str Str Str Str Assign NameStore BinOpAdd BinOpAdd Call NameLoad Str NameLoad Call NameLoad Str Assign NameStore Call NameLoad BinOpAdd NameLoad Call NameLoad Call NameLoad Str Assign NameStore BinOpAdd BinOpAdd BinOpAdd BinOpAdd BinOpAdd BinOpAdd BinOpAdd BinOpAdd Call NameLoad Str Call NameLoad NameLoad Call NameLoad Str Call NameLoad Call NameLoad NameLoad Call NameLoad Str Call NameLoad Str Call NameLoad NameLoad Call NameLoad Str Call NameLoad Str Assign NameStore BinOpAdd BinOpAdd Call NameLoad Str Call NameLoad Str Call NameLoad Str Return TupleLoad NameLoad NameLoad NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore BinOpAdd BinOpAdd Call NameLoad BinOpAdd BinOpAdd NameLoad Str Str Call NameLoad Call NameLoad Str Call NameLoad Call NameLoad Str Assign NameStore BinOpAdd Call NameLoad keyword NameLoad keyword ListLoad Str Str Str Str Call NameLoad Call NameLoad Str Assign NameStore BinOpAdd Call NameLoad BinOpAdd BinOpAdd BinOpAdd BinOpAdd BinOpAdd NameLoad Str Str Str Str Str Call NameLoad Call NameLoad Str Assign NameStore BinOpAdd BinOpAdd BinOpAdd Call NameLoad Str Call NameLoad Str Call NameLoad NameLoad Call NameLoad Str Assign NameStore BinOpAdd BinOpAdd Call NameLoad Str Call NameLoad Call NameLoad NameLoad Call NameLoad Str Assign NameStore BinOpBitOr NameLoad Call NameLoad Str Assign NameStore BinOpAdd NameLoad Call NameLoad NameLoad Return TupleLoad NameLoad NameLoad decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr Str AttributeLoad NameLoad attr For NameStore NameLoad body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Str Call AttributeLoad NameLoad attr Expr Yield SubscriptLoad AttributeLoad NameLoad attr Slice Call AttributeLoad NameLoad attr NameLoad decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr Str AttributeLoad NameLoad attr For NameStore NameLoad body Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Str Call AttributeLoad NameLoad attr Expr Yield SubscriptLoad AttributeLoad NameLoad attr Slice Call AttributeLoad NameLoad attr NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Str Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Str NameLoad Assign NameStore BinOpAdd BinOpAdd Call NameLoad Str Call NameLoad BinOpAdd BinOpAdd NameLoad Str Str Str Assign NameStore SubscriptLoad SubscriptLoad Call AttributeLoad NameLoad attr SubscriptLoad AttributeLoad NameLoad attr Slice NameLoad NameLoad Index Num Index Num Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore ListLoad For NameStore Call AttributeLoad NameLoad attr body Assign NameStore SubscriptLoad SubscriptLoad Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Index Num Index Num Expr Call AttributeLoad NameLoad attr NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Dict For NameStore Call AttributeLoad NameLoad attr body Assign NameStore SubscriptLoad SubscriptLoad Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Index Num Index Num Assign SubscriptStore NameLoad Index NameLoad Call NameLoad SubscriptLoad SubscriptLoad Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Index Num Index Num Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Dict For NameStore Call AttributeLoad NameLoad attr body Assign NameStore SubscriptLoad SubscriptLoad Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Index Num Index Num Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Assign SubscriptStore NameLoad Index NameLoad ListComp Call AttributeLoad NameLoad attr comprehension NameStore NameLoad comprehension NameStore NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Dict For NameStore Call AttributeLoad NameLoad attr body Assign NameStore SubscriptLoad Call AttributeLoad AttributeLoad NameLoad attr attr SubscriptLoad Call AttributeLoad NameLoad attr Str Index Num Index Num Assign SubscriptStore NameLoad Index SubscriptLoad NameLoad Index Num SubscriptLoad NameLoad Slice Num Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Dict For NameStore Call AttributeLoad NameLoad attr body Assign NameStore SubscriptLoad SubscriptLoad Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Index Num Index Num Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Assign NameStore ListComp Call NameLoad NameLoad comprehension NameStore NameLoad comprehension NameStore NameLoad If CompareIn Str NameLoad body Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr TupleLoad Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad BinOpFloorDiv AttributeLoad NameLoad attr Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad orelse Assign NameStore Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Assign NameStore ListComp ListLoad comprehension NameStore Call NameLoad NameLoad For TupleStore NameStore NameStore Call NameLoad NameLoad body Expr Call AttributeLoad SubscriptLoad NameLoad Index BinOpMod NameLoad NameLoad attr NameLoad Assign NameStore NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign SubscriptStore NameLoad Index NameLoad NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore ListComp ListLoad NameLoad NameLoad comprehension NameStore Call AttributeLoad AttributeLoad NameLoad attr attr comprehension NameStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str TryExcept body Assign NameStore Call NameLoad AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Assign NameStore ListLoad For NameStore Call NameLoad Call AttributeLoad AttributeLoad NameLoad attr attr body Assign NameStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Assign NameStore Call NameLoad NameLoad Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad NameLoad keyword SubscriptLoad AttributeLoad NameLoad attr Index NameLoad keyword ListComp Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad comprehension NameStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Expr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr NameLoad For TupleStore NameStore NameStore Call AttributeLoad AttributeLoad NameLoad attr attr body For NameStore NameLoad body Assign TupleStore NameStore NameStore Call NameLoad Lambda arguments args NameParam defaults Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr Str Assign SubscriptStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad NameLoad Return NameLoad handlers ExceptHandler type NameLoad body Raise Call NameLoad Str decorator_list decorator_list ClassDef bases NameLoad body Expr Str FunctionDef arguments args NameParam NameParam defaults body Expr Str If UnaryOpNot Call NameLoad NameLoad NameLoad body Raise Call NameLoad Str Assign AttributeStore NameLoad attr NameLoad If UnaryOpNot AttributeLoad AttributeLoad NameLoad attr attr body Assign AttributeStore NameLoad attr Str orelse Assign AttributeStore NameLoad attr AttributeLoad AttributeLoad NameLoad attr attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call NameLoad Str Assign NameStore Call NameLoad Str Assign NameStore Call NameLoad Str Assign NameStore Call NameLoad Str Return TupleLoad NameLoad NameLoad NameLoad NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign TupleStore NameStore NameStore NameStore NameStore Call AttributeLoad NameLoad attr Assign NameStore Str AugAssignAdd NameStore Call AttributeLoad NameLoad attr keyword AttributeLoad NameLoad attr Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr For NameStore Call NameLoad NameLoad body Assign NameStore Call NameLoad Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Assign NameStore Call AttributeLoad Str attr SubscriptLoad AttributeLoad NameLoad attr Index NameLoad If UnaryOpNot SubscriptLoad AttributeLoad NameLoad attr Index NameLoad body Assign NameStore Str orelse Assign NameStore Str For NameStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad body AugAssignAdd NameStore Call AttributeLoad NameLoad attr keyword NameLoad AugAssignAdd NameStore Call AttributeLoad NameLoad attr keyword NameLoad keyword NameLoad keyword NameLoad keyword NameLoad For NameStore Call NameLoad NameLoad body If UnaryOpNot SubscriptLoad AttributeLoad NameLoad attr Index NameLoad body Assign NameStore Str Assign NameStore Str orelse Assign NameStore Call AttributeLoad Str attr SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Assign NameStore Str Assign NameStore Call AttributeLoad Str attr Call NameLoad NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad AugAssignAdd NameStore Call AttributeLoad NameLoad attr keyword NameLoad keyword NameLoad keyword NameLoad keyword NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Dict Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr For NameStore NameLoad body Assign NameStore AttributeLoad NameLoad attr Assign SubscriptStore NameLoad Index NameLoad ListLoad For NameStore Call NameLoad SubscriptLoad Call AttributeLoad NameLoad attr ListLoad NameLoad Index NameLoad body Expr Call AttributeLoad SubscriptLoad NameLoad Index NameLoad attr BinOpAdd BinOpAdd Call NameLoad NameLoad Str Call NameLoad NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Assign NameStore Dict For NameStore Call NameLoad NameLoad body Assign NameStore SubscriptLoad AttributeLoad AttributeLoad NameLoad attr attr Index NameLoad Assign SubscriptStore NameLoad Index NameLoad ListLoad For TupleStore NameStore NameStore Call AttributeLoad NameLoad attr body Expr Call AttributeLoad SubscriptLoad NameLoad Index NameLoad attr BinOpAdd BinOpAdd Call NameLoad NameLoad Str Call NameLoad NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Expr Call AttributeLoad NameLoad attr keyword Lambda arguments args NameParam defaults AttributeLoad NameLoad attr Assign NameStore Dict For NameStore NameLoad body Assign SubscriptStore NameLoad Index AttributeLoad NameLoad attr ListLoad For NameStore Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Slice Num Num body Expr Call AttributeLoad SubscriptLoad NameLoad Index AttributeLoad NameLoad attr attr NameLoad Return NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Assign NameStore Call AttributeLoad AttributeLoad NameLoad attr attr Assign NameStore Dict For NameStore NameLoad body Assign SubscriptStore NameLoad Index AttributeLoad NameLoad attr Call AttributeLoad AttributeLoad NameLoad attr attr Return NameLoad decorator_list FunctionDef arguments args NameParam NameParam defaults body Expr Str Assign NameStore Call AttributeLoad NameLoad attr With Call NameLoad NameLoad Str NameStore body Expr Call AttributeLoad NameLoad attr NameLoad decorator_list decorator_list
N/A N/A re string Template N/A numpy pyparsing Word alphanums Suppress Optional CharsNotIn Group nums ZeroOrMore OneOrMore cppStyleComment Literal printables pgmpy.models BayesianModel pgmpy.factors TabularCPD pgmpy.extern.six.moves map range BIFReader N/A object N/A N/A 
    Base class for reading network file in bif format
     __init__ N/A N/A self path string N/A None None N/A N/A 
        Initialisation of BifReader object

        Parameters
        ----------------
        path : file or str
                File of bif data
        string : str
                String of bif data
        Examples
        -----------------
        # dog-problem.bif file is present at
        # http://www.cs.cmu.edu/~javabayes/Examples/DogProblem/dog-problem.bif
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader = BIFReader("bif_test.bif")
        <pgmpy.readwrite.BIF.BIFReader object at 0x7f2375621cf8>
         N/A path N/A N/A N/A open path r network N/A N/A N/A self network N/A N/A network read N/A N/A string N/A N/A N/A self network string N/A N/A N/A ValueError Must specify either path or string N/A N/A " N/A self network N/A N/A N/A self network N/A N/A N/A self network replace " N/A N/A N/A /* N/A self network N/A // N/A self network N/A N/A N/A self network N/A N/A N/A N/A cppStyleComment suppress transformString N/A self network N/A N/A N/A self name_expr N/A self state_expr N/A self property_expr N/A N/A self get_variable_grammar N/A N/A N/A self probability_expr N/A self cpd_expr N/A N/A self get_probability_grammar N/A N/A self network_name N/A N/A self get_network_name N/A N/A self variable_names N/A N/A self get_variables N/A N/A self variable_states N/A N/A self get_states N/A N/A self variable_properties N/A N/A self get_property N/A N/A self variable_parents N/A N/A self get_parents N/A N/A self variable_cpds N/A N/A self get_cpd N/A N/A self variable_edges N/A N/A self get_edges N/A get_variable_grammar N/A N/A self N/A N/A N/A 
         A method that returns variable grammar
         N/A word_expr N/A Word N/A N/A alphanums _ - N/A word_expr2 N/A Word initChars printables excludeChars N/A { } , N/A name_expr N/A N/A N/A Suppress variable word_expr N/A Suppress { N/A state_expr N/A ZeroOrMore N/A word_expr2 N/A Optional N/A Suppress , N/A variable_state_expr N/A N/A N/A N/A N/A N/A N/A N/A N/A Suppress type N/A Suppress word_expr N/A Suppress [ N/A Suppress N/A Word nums N/A Suppress ] N/A Suppress { N/A Group state_expr N/A Suppress } N/A Suppress ; N/A property_expr N/A N/A N/A Suppress property N/A CharsNotIn ; N/A Suppress ; N/A N/A name_expr variable_state_expr property_expr N/A get_probability_grammar N/A N/A self N/A N/A N/A 
        A method that returns probability grammar
         N/A word_expr N/A N/A N/A Word N/A N/A alphanums - _ N/A Suppress N/A Optional | N/A Suppress N/A Optional , N/A word_expr2 N/A N/A Word initChars printables excludeChars N/A , ) ( N/A Suppress N/A Optional , N/A num_expr N/A N/A Word N/A N/A N/A N/A N/A nums - + e E . N/A Suppress N/A Optional , N/A probability_expr N/A N/A N/A N/A Suppress probability N/A Suppress ( N/A OneOrMore word_expr N/A Suppress ) N/A optional_expr N/A N/A N/A Suppress ( N/A Suppress N/A OneOrMore word_expr2 N/A Suppress ) N/A probab_attributes N/A optional_expr N/A Suppress table N/A cpd_expr N/A probab_attributes N/A OneOrMore num_expr N/A N/A probability_expr cpd_expr N/A variable_block N/A N/A self N/A N/A N/A start N/A N/A re finditer variable N/A self network N/A index start N/A N/A end N/A N/A N/A self network find }
 N/A N/A index start N/A N/A N/A N/A self network N/A N/A N/A index start end N/A probability_block N/A N/A self N/A N/A N/A start N/A N/A re finditer probability N/A self network N/A index start N/A N/A end N/A N/A N/A self network find }
 N/A N/A index start N/A N/A N/A N/A self network N/A N/A N/A index start end N/A get_network_name N/A N/A self N/A N/A N/A 
        Retruns the name of the network

        Example
        ---------------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIF.BifReader("bif_test.bif")
        >>> reader.network_name()
        'Dog-Problem'
         N/A start N/A N/A N/A self network find network N/A end N/A N/A N/A self network find }
 start N/A network_attribute N/A N/A N/A Suppress network N/A Word N/A N/A alphanums _ - { N/A network_name N/A N/A N/A N/A network_attribute searchString N/A N/A self network N/A start end N/A 0 N/A 0 N/A network_name N/A get_variables N/A N/A self N/A N/A N/A 
        Returns list of variables of the network

        Example
        -------------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_variables()
        ['light-on','bowel_problem','dog-out','hear-bark','family-out']
         N/A variable_names N/A N/A block N/A N/A self variable_block N/A N/A name N/A N/A N/A N/A N/A self name_expr searchString block N/A 0 N/A 0 N/A N/A N/A variable_names append name N/A variable_names N/A get_states N/A N/A self N/A N/A N/A 
        Returns the states of variables present in the network

        Example
        -----------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_states()
        {'bowel-problem': ['true','false'],
        'dog-out': ['true','false'],
        'family-out': ['true','false'],
        'hear-bark': ['true','false'],
        'light-on': ['true','false']}
         N/A variable_states N/A N/A block N/A N/A self variable_block N/A N/A name N/A N/A N/A N/A N/A self name_expr searchString block N/A 0 N/A 0 N/A N/A variable_states N/A name N/A list N/A N/A N/A N/A N/A self state_expr searchString block N/A 0 N/A 0 N/A variable_states N/A get_property N/A N/A self N/A N/A N/A 
        Returns the property of the variable

        Example
        -------------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_property()
        {'bowel-problem': ['position = (335, 99)'],
        'dog-out': ['position = (300, 195)'],
        'family-out': ['position = (257, 99)'],
        'hear-bark': ['position = (296, 268)'],
        'light-on': ['position = (218, 195)']}
         N/A variable_properties N/A N/A block N/A N/A self variable_block N/A N/A name N/A N/A N/A N/A N/A self name_expr searchString block N/A 0 N/A 0 N/A properties N/A N/A N/A self property_expr searchString block N/A N/A variable_properties N/A name N/A N/A N/A y strip N/A x properties N/A y x N/A variable_properties N/A get_parents N/A N/A self N/A N/A N/A 
        Returns the parents of the variables present in the network

        Example
        --------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_parents()
        {'bowel-problem': [],
        'dog-out': ['family-out', 'bowel-problem'],
        'family-out': [],
        'hear-bark': ['dog-out'],
        'light-on': ['family-out']}
         N/A variable_parents N/A N/A block N/A N/A self probability_block N/A N/A names N/A N/A N/A N/A self probability_expr searchString N/A N/A N/A block split N/A 0 N/A 0 N/A N/A variable_parents N/A N/A names N/A 0 N/A names N/A 1 N/A variable_parents N/A get_cpd N/A N/A self N/A N/A N/A 
        Returns the CPD of the variables present in the network

        Example
        --------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_cpd()
        {'bowel-problem': np.array([[0.01],
                                    [0.99]]),
        'dog-out': np.array([[0.99, 0.97, 0.9, 0.3],
                            [0.01, 0.03, 0.1, 0.7]]),
        'family-out': np.array([[0.15],
                                [0.85]]),
        'hear-bark': np.array([[0.7, 0.01],
                                [0.3, 0.99]]),
        'light-on': np.array([[0.6, 0.05],
                            [0.4, 0.95]])}
          N/A variable_cpds N/A N/A block N/A N/A self probability_block N/A N/A name N/A N/A N/A N/A N/A self probability_expr searchString block N/A 0 N/A 0 N/A cpds N/A N/A N/A self cpd_expr searchString block N/A arr N/A N/A float j N/A i cpds N/A j i N/A N/A table block N/A N/A arr N/A N/A numpy array arr N/A arr N/A N/A arr reshape N/A N/A len N/A N/A self variable_states N/A name N/A N/A arr size N/A len N/A N/A self variable_states N/A name N/A N/A length N/A len N/A N/A self variable_states N/A name N/A reshape_arr N/A N/A N/A i N/A range length N/A N/A i val N/A enumerate arr N/A N/A N/A N/A N/A reshape_arr N/A N/A i length append val N/A arr reshape_arr N/A arr N/A N/A numpy array arr N/A N/A variable_cpds N/A name arr N/A variable_cpds N/A get_edges N/A N/A self N/A N/A N/A 
        Returns the edges of the network

        Example
        --------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_edges()
        [['family-out', 'light-on'],
         ['family-out', 'dog-out'],
         ['bowel-problem', 'dog-out'],
         ['dog-out', 'hear-bark']]
         N/A edges N/A N/A value key N/A key N/A N/A N/A self variable_parents keys N/A value N/A N/A self variable_parents N/A key N/A edges N/A get_model N/A N/A self N/A N/A N/A 
        Returns the fitted bayesian model

        Example
        ----------
        >>> from pgmpy.readwrite import BIFReader
        >>> reader = BIFReader("bif_test.bif")
        >>> reader.get_model()
        <pgmpy.models.BayesianModel.BayesianModel object at 0x7f20af154320>
         N/A N/A N/A model N/A BayesianModel N/A self variable_edges N/A N/A model name N/A self network_name N/A N/A N/A model add_nodes_from N/A self variable_names N/A tabular_cpds N/A N/A var N/A sorted N/A N/A N/A self variable_cpds keys N/A N/A values N/A N/A self variable_cpds N/A var N/A cpd N/A TabularCPD var N/A len N/A N/A self variable_states N/A var values evidence N/A N/A self variable_parents N/A var evidence_card N/A N/A len N/A N/A self variable_states N/A evidence_var N/A evidence_var N/A N/A self variable_parents N/A var N/A N/A N/A tabular_cpds append cpd N/A N/A N/A model add_cpds tabular_cpds N/A N/A node properties N/A N/A N/A self variable_properties items N/A N/A prop properties N/A N/A N/A prop_name prop_value N/A map N/A N/A N/A t N/A N/A N/A t strip N/A N/A prop split = N/A N/A N/A N/A model node N/A node N/A prop_name prop_value N/A model N/A N/A N/A AttributeError N/A N/A N/A AttributeError First get states of variables, edges, parents and network name N/A N/A BIFWriter N/A object N/A N/A 
    Base class for writing BIF network file format
     __init__ N/A N/A self model N/A N/A N/A 
        Initialise a BIFWriter Object

        Parameters
        ----------
        model: BayesianModel Instance

        Examples
        ---------
        >>> from pgmpy.readwrite import BIFWriter
        >>> writer = BIFWriter(model)
        >>> writer
        <writer_BIF.BIFWriter at 0x7f05e5ea27b8>
         N/A N/A N/A isinstance model BayesianModel N/A N/A N/A TypeError model must be an instance of BayesianModel N/A N/A self model model N/A N/A N/A N/A self model name N/A N/A N/A self network_name unknown N/A N/A N/A self network_name N/A N/A self model name N/A N/A self variable_states N/A N/A self get_states N/A N/A self property_tag N/A N/A self get_properties N/A N/A self variable_parents N/A N/A self get_parents N/A N/A self tables N/A N/A self get_cpds N/A BIF_templates N/A N/A self N/A N/A N/A 
        Create template for writing in BIF format
         N/A network_template N/A Template network $name {
}
 N/A variable_template N/A Template variable $name {
    type discrete [ $no_of_states ] { $states };
$properties}
 N/A property_template N/A Template     property $prop ;
 N/A probability_template N/A Template probability ( $variable_$seprator_$parents ) {
    table $values ;
}
 N/A N/A network_template variable_template property_template probability_template N/A __str__ N/A N/A self N/A N/A N/A 
        Returns the BIF format as string
         N/A N/A network_template variable_template property_template probability_template N/A N/A self BIF_templates N/A network N/A network N/A N/A network_template substitute name N/A self network_name N/A variables N/A N/A N/A self model nodes N/A var N/A sorted variables N/A N/A no_of_states N/A str N/A len N/A N/A self variable_states N/A var N/A states N/A N/A ,  join N/A N/A self variable_states N/A var N/A N/A N/A N/A self property_tag N/A var N/A N/A properties N/A N/A properties N/A prop_val N/A N/A self property_tag N/A var N/A N/A properties N/A N/A property_template substitute prop prop_val N/A network N/A N/A variable_template substitute name var no_of_states no_of_states states states properties properties N/A var N/A sorted variables N/A N/A N/A N/A N/A self variable_parents N/A var N/A N/A parents N/A seprator N/A N/A parents N/A N/A ,  join N/A N/A self variable_parents N/A var N/A seprator  |  N/A cpd N/A N/A ,  join N/A map str N/A N/A self tables N/A var N/A network N/A N/A probability_template substitute variable_ var seprator_ seprator parents parents values cpd N/A network N/A get_variables N/A N/A self N/A N/A N/A 
        Add variables to BIF

        Returns
        -------
        list: a list containing names of variable

        Example
        -------
        >>> from pgmpy.readwrite import BIFReader, BIFWriter
        >>> model = BIFReader('dog-problem.bif').get_model()
        >>> writer = BIFWriter(model)
        >>> writer.get_variables()
        ['bowel-problem', 'family-out', 'hear-bark', 'light-on', 'dog-out']
         N/A variables N/A N/A N/A self model nodes N/A variables N/A get_states N/A N/A self N/A N/A N/A 
        Add states to variable of BIF

        Returns
        -------
        dict: dict of type {variable: a list of states}

        Example
        -------
        >>> from pgmpy.readwrite import BIFReader, BIFWriter
        >>> model = BIFReader('dog-problem.bif').get_model()
        >>> writer = BIFWriter(model)
        >>> writer.get_states()
        {'bowel-problem': ['bowel-problem_0', 'bowel-problem_1'],
         'dog-out': ['dog-out_0', 'dog-out_1'],
         'family-out': ['family-out_0', 'family-out_1'],
         'hear-bark': ['hear-bark_0', 'hear-bark_1'],
         'light-on': ['light-on_0', 'light-on_1']}
         N/A variable_states N/A N/A cpds N/A N/A N/A self model get_cpds N/A cpd cpds N/A N/A variable N/A cpd variable N/A N/A variable_states N/A variable N/A N/A state N/A range N/A N/A N/A cpd get_cardinality N/A variable N/A variable N/A N/A N/A N/A N/A variable_states N/A variable append N/A N/A N/A str variable _ N/A str state N/A variable_states N/A get_properties N/A N/A self N/A N/A N/A 
        Add property to variables in BIF

        Returns
        -------
        dict: dict of type {variable: list of properties }

        Example
        -------
        >>> from pgmpy.readwrite import BIFReader, BIFWriter
        >>> model = BIFReader('dog-problem.bif').get_model()
        >>> writer = BIFWriter(model)
        >>> writer.get_properties()
        {'bowel-problem': ['position = (335, 99)'],
         'dog-out': ['position = (300, 195)'],
         'family-out': ['position = (257, 99)'],
         'hear-bark': ['position = (296, 268)'],
         'light-on': ['position = (218, 195)']}
         N/A variables N/A N/A N/A self model nodes N/A property_tag N/A N/A variable N/A sorted variables N/A N/A properties N/A N/A N/A self model node N/A variable N/A N/A property_tag N/A variable N/A N/A N/A prop val N/A N/A properties items N/A N/A N/A N/A N/A property_tag N/A variable append N/A N/A N/A str prop  =  N/A str val N/A property_tag N/A get_parents N/A N/A self N/A N/A N/A 
        Add the parents to BIF

        Returns
        -------
        dict: dict of type {variable: a list of parents}

        Example
        -------
        >>> from pgmpy.readwrite import BIFReader, BIFWriter
        >>> model = BIFReader('dog-problem.bif').get_model()
        >>> writer = BIFWriter(model)
        >>> writer.get_parents()
        {'bowel-problem': [],
         'dog-out': ['bowel-problem', 'family-out'],
         'family-out': [],
         'hear-bark': ['dog-out'],
         'light-on': ['family-out']}
         N/A cpds N/A N/A N/A self model get_cpds N/A N/A N/A cpds sort key N/A N/A N/A x N/A N/A x variable N/A variable_parents N/A N/A cpd cpds N/A N/A N/A variable_parents N/A N/A cpd variable N/A N/A parent N/A sorted N/A N/A cpd variables N/A 0 -1 N/A N/A N/A N/A N/A variable_parents N/A N/A cpd variable append parent N/A variable_parents N/A get_cpds N/A N/A self N/A N/A N/A 
        Adds tables to BIF

        Returns
        -------
        dict: dict of type {variable: array}

        Example
        -------
        >>> from pgmpy.readwrite import BIFReader, BIFWriter
        >>> model = BIFReader('dog-problem.bif').get_model()
        >>> writer = BIFWriter(model)
        >>> writer.get_cpds()
        {'bowel-problem': array([ 0.01,  0.99]),
         'dog-out': array([ 0.99,  0.97,  0.9 ,  0.3 ,  0.01,  0.03,  0.1 ,  0.7 ]),
         'family-out': array([ 0.15,  0.85]),
         'hear-bark': array([ 0.7 ,  0.01,  0.3 ,  0.99]),
         'light-on': array([ 0.6 ,  0.05,  0.4 ,  0.95])}
         N/A cpds N/A N/A N/A self model get_cpds N/A tables N/A N/A cpd cpds N/A N/A N/A tables N/A N/A cpd variable N/A N/A N/A cpd values ravel N/A tables N/A write_bif N/A N/A self filename N/A N/A N/A 
        Writes the BIF data into a file

        Parameters
        ----------
        filename : Name of the file

        Example
        -------
        >>> from pgmpy.readwrite import BIFReader, BIFWriter
        >>> model = BIFReader('dog-problem.bif').get_model()
        >>> writer = BIFWriter(model)
        >>> writer.write_bif(filname='test_file.bif')
         N/A writer N/A N/A self __str__ N/A N/A open filename w fout N/A N/A N/A N/A fout write writer N/A N/A