Module Import alias alias ImportFrom alias Assign NameStore ListLoad Str Str ClassDef bases NameLoad body Expr Str FunctionDef arguments args NameParam NameParam NameParam defaults body Expr Str Raise Call NameLoad Str decorator_list FunctionDef arguments args NameParam defaults body Expr Str Raise Call NameLoad Str decorator_list decorator_list ClassDef bases NameLoad body Expr Str FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam defaults ListLoad Str Str Num Num body Assign AttributeStore NameLoad attr BinOpAdd Call AttributeLoad NameLoad attr Str Str Str Assign AttributeStore NameLoad attr Dict Assign AttributeStore NameLoad attr Dict Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr Num Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore NameLoad attr NameLoad decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Return BinOpMod Str TupleLoad NameLoad NameLoad AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Expr Str FunctionDef arguments args NameParam NameParam NameParam NameParam NameParam NameParam defaults kwarg body Assign NameStore Call AttributeLoad NameLoad attr For TupleStore NameStore NameStore Call AttributeLoad NameLoad attr body Assign SubscriptStore NameLoad Index NameLoad NameLoad Assign SubscriptStore NameLoad Index Str NameLoad Assign SubscriptStore NameLoad Index Str SubscriptLoad NameLoad Index Num Assign SubscriptStore NameLoad Index Str SubscriptLoad NameLoad Index Num Assign SubscriptStore NameLoad Index Str BinOpMod Str TupleLoad NameLoad NameLoad Assign SubscriptStore NameLoad Index Str NameLoad Expr Call AttributeLoad NameLoad attr decorator_list AugAssignAdd AttributeStore NameLoad attr Num If CompareIs AttributeLoad NameLoad attr NameLoad body Assign AttributeStore NameLoad attr Call AttributeLoad SubscriptLoad NameLoad Index Str attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr Call AttributeLoad SubscriptLoad NameLoad Index Str attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr ListLoad Str Str Str Str Str Assign AttributeStore NameLoad attr Call NameLoad keyword AttributeLoad NameLoad attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr keyword AttributeLoad NameLoad attr For TupleStore NameStore NameStore Call AttributeLoad SubscriptLoad NameLoad Index Str attr body Assign SubscriptStore AttributeLoad NameLoad attr Index NameLoad Dict If CompareNotIn NameLoad AttributeLoad NameLoad attr body Assign SubscriptStore AttributeLoad NameLoad attr Index NameLoad Dict For TupleStore NameStore NameStore Call AttributeLoad NameLoad attr body Assign SubscriptStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad NameLoad If BoolOpOr CompareNotIn NameLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad CompareLt NameLoad SubscriptLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad Index Num body Assign SubscriptStore SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad TupleLoad NameLoad AttributeLoad NameLoad attr If CompareIn NameLoad AttributeLoad NameLoad attr body Expr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr NameLoad NameLoad Assign NameStore SubscriptLoad NameLoad Index Str Expr Call AttributeLoad NameLoad attr SubscriptLoad NameLoad Index Str Expr Call NameLoad AttributeLoad NameLoad attr SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad NameLoad SubscriptLoad SubscriptLoad NameLoad Index Str Index NameLoad NameLoad NameLoad If BoolOpAnd CompareGt AttributeLoad NameLoad attr Num CompareEq BinOpMod AttributeLoad NameLoad attr AttributeLoad NameLoad attr Num body Expr Call AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Expr Str If CompareGt AttributeLoad NameLoad attr Num body Print BinOpMod Str TupleLoad AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr For TupleStore NameStore NameStore Call AttributeLoad AttributeLoad NameLoad attr attr body Print BinOpMod Str NameLoad For NameStore NameLoad body If CompareEq SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad SubscriptLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad Index Num body Assign NameStore Str orelse Assign TupleStore NameStore NameStore SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad Assign NameStore BinOpMod Str TupleLoad NameLoad NameLoad Print BinOpMod Str TupleLoad NameLoad SubscriptLoad SubscriptLoad AttributeLoad NameLoad attr Index NameLoad Index NameLoad NameLoad orelse Print Str Expr Call AttributeLoad AttributeLoad NameLoad attr attr decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults body Expr Str Import alias identifier Assign NameStore Call AttributeLoad NameLoad attr NameLoad NameLoad Return Call AttributeLoad NameLoad attr NameLoad decorator_list FunctionDef arguments args NameParam defaults body Expr Str Return AttributeLoad NameLoad attr decorator_list decorator_list
N/A N/A sys os pyGeno.tools.parsers.CSVTools CSVFile N/A __all__ N/A Recorder_ABC GGPlot2 Recorder_ABC N/A object N/A N/A A recorder is meant to be plugged into a trainer to record the
	advancement of the training. This is the interface a Recorder must expose. commit N/A N/A self store model N/A N/A N/A Does something with the currenty state of the trainer's store and the model N/A N/A NotImplemented Should be implemented in child N/A __len__ N/A N/A self N/A N/A N/A returns the number of commits performed N/A N/A NotImplemented Should be implemented in child N/A N/A GGPlot2 N/A Recorder_ABC N/A N/A This training recorder will create a nice CSV file fit for using with ggplot2 and will update
 	it as the training goes. It will also save the best model for each set of the trainer, and print
 	regular reports on the console.

 	:param int printRate: The rate at which the status is printed on the console. If set to <= to 0, will never print.
 	:param int write: The rate at which the status is written on disk
 	:param list saveBestsFor: Name of the sets for wich the best models parameters should be saved
 	 __init__ N/A N/A self filename saveBestsFor printRate writeRate N/A N/A test validation 1 1 N/A N/A N/A self filename N/A N/A N/A filename replace .csv .ggplot2.csv N/A N/A self bestScores N/A N/A N/A self currentScores N/A N/A N/A self csvLegend None N/A N/A self csvFile None N/A N/A self length 0 N/A N/A self printRate printRate N/A N/A self writeRate writeRate N/A N/A self saveBestsFor saveBestsFor N/A getBestModelFilename N/A N/A self outputName theSet N/A N/A N/A N/A best-%s-%s-%s N/A outputName theSet N/A self filename N/A commit N/A N/A self store model N/A N/A N/A Appends the current state of the store to the CSV. This one is meant to be called by the trainer _fillLine N/A N/A csvFile score bestScore setName setLen outputName N/A csvValues N/A N/A line N/A N/A csvFile newLine N/A N/A k v N/A N/A csvValues iteritems N/A N/A N/A line N/A k v N/A N/A line N/A score score N/A N/A line N/A best_score N/A bestScore N/A 0 N/A N/A line N/A best_score_commit N/A bestScore N/A 1 N/A N/A line N/A set N/A %s(%s) N/A setName setLen N/A N/A line N/A output outputName N/A N/A N/A line commit N/A N/A N/A self length 1 N/A N/A N/A self csvLegend None N/A N/A N/A self csvLegend N/A N/A N/A store N/A hyperParameters keys N/A N/A N/A N/A self csvLegend extend N/A N/A N/A store N/A runInfos keys N/A N/A N/A N/A self csvLegend extend N/A score best_score best_score_commit set output N/A N/A self csvFile N/A CSVFile legend N/A self csvLegend N/A N/A N/A N/A self csvFile streamToFile N/A self filename writeRate N/A self writeRate N/A N/A theSet scores N/A N/A N/A store N/A scores iteritems N/A N/A N/A N/A self currentScores N/A theSet N/A N/A N/A theSet N/A self bestScores N/A N/A N/A N/A self bestScores N/A theSet N/A N/A N/A outputName score N/A N/A scores iteritems N/A N/A N/A N/A N/A self currentScores N/A theSet N/A outputName score N/A N/A N/A outputName N/A N/A self bestScores N/A theSet N/A score N/A N/A N/A N/A self bestScores N/A theSet N/A outputName N/A 0 N/A N/A N/A N/A N/A self bestScores N/A theSet N/A outputName N/A score N/A self length N/A N/A theSet N/A self saveBestsFor N/A N/A N/A N/A model save N/A N/A self getBestModelFilename outputName theSet N/A muchData N/A store N/A hyperParameters N/A N/A N/A muchData update N/A store N/A runInfos N/A N/A _fillLine N/A self csvFile N/A N/A N/A self currentScores N/A theSet N/A outputName N/A N/A N/A self bestScores N/A theSet N/A outputName theSet N/A N/A store N/A setSizes N/A theSet outputName muchData N/A N/A N/A N/A self printRate 0 N/A N/A N/A self length N/A self printRate 0 N/A N/A N/A N/A self printCurrentState N/A printCurrentState N/A N/A self N/A N/A N/A prints the current state stored in the recorder N/A N/A N/A self length 0 N/A N/A N/A 
==>rec: ggplot2, commit %s, pid: %s: N/A N/A self length N/A N/A os getpid N/A N/A setName scores N/A N/A N/A self bestScores iteritems N/A N/A N/A   |-%s set setName N/A outputName scores N/A N/A N/A N/A N/A N/A self currentScores N/A setName N/A outputName N/A N/A N/A N/A self bestScores N/A setName N/A outputName N/A 0 N/A N/A highlight +best+ N/A N/A N/A score epoch N/A N/A N/A self bestScores N/A setName N/A outputName N/A highlight N/A (best: %s @ commit: %s) N/A score epoch N/A N/A     |->%s: %s %s N/A outputName N/A N/A N/A self currentScores N/A setName N/A outputName highlight N/A N/A ==>rec: ggplot2, nothing to show yet N/A N/A N/A N/A sys stdout flush N/A getBestModel N/A N/A self outputName theSet N/A N/A N/A returns the best model for a given output and set N/A Mariana.network MNET N/A fn N/A N/A self getBestModelFilename outputName theSet N/A N/A N/A MNET loadModel fn N/A __len__ N/A N/A self N/A N/A N/A returns the number of commits performed N/A N/A self length N/A N/A