Module Expr Str Import alias Import alias Import alias Import alias ImportFrom alias ImportFrom alias ImportFrom alias Assign NameStore Str Assign NameStore Num ClassDef bases NameLoad body FunctionDef arguments args NameParam defaults kwarg body Expr Call AttributeLoad NameLoad attr NameLoad NameLoad Assign AttributeStore NameLoad attr Str Assign AttributeStore NameLoad attr Str Assign AttributeStore NameLoad attr Dict Str Str Str Str Str Str Str Str Assign AttributeStore NameLoad attr ListLoad Str Str Str Assign AttributeStore NameLoad attr Str Assign AttributeStore NameLoad attr Str decorator_list FunctionDef arguments args NameParam NameParam NameParam defaults NameLoad NameLoad body Expr Call AttributeLoad NameLoad attr NameLoad NameLoad NameLoad Expr Call AttributeLoad AttributeLoad NameLoad attr attr Call NameLoad Str keyword SubscriptLoad AttributeLoad NameLoad attr Index Str Expr Call AttributeLoad AttributeLoad NameLoad attr attr SubscriptLoad AttributeLoad NameLoad attr Index Str Expr Call AttributeLoad AttributeLoad NameLoad attr attr SubscriptLoad AttributeLoad NameLoad attr Index Str Str Assign NameStore Call AttributeLoad NameLoad attr Call AttributeLoad AttributeLoad NameLoad attr attr Str Assign NameStore Call AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr SubscriptLoad AttributeLoad NameLoad attr Index Str NameLoad Assign NameStore ListComp Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad comprehension NameStore NameLoad If UnaryOpNot Call AttributeLoad AttributeLoad NameLoad attr attr Str body Expr Call AttributeLoad AttributeLoad NameLoad attr attr Str Str keyword NameLoad Expr Call AttributeLoad NameLoad attr Str Assign NameStore ListLoad Assign NameStore ListLoad For NameStore NameLoad body Print BinOpAdd BinOpAdd Str NameLoad Str Assign NameStore Call AttributeLoad NameLoad attr Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr Num Assign NameStore AttributeLoad NameLoad attr Assign NameStore Dict Str ListLoad Assign NameStore Num For TupleStore NameStore NameStore Call NameLoad Call AttributeLoad NameLoad attr Num body If UnaryOpNot Call AttributeLoad NameLoad attr NameLoad body Assign NameStore Call AttributeLoad Call AttributeLoad NameLoad attr NameLoad attr If CompareIn NameLoad ListLoad Str Str body Assign NameStore Str If CompareIn Str NameLoad body Assign NameStore Str If BoolOpAnd CompareEq NameLoad Str CompareEq NameLoad Num body Assign NameStore Str If BoolOpOr CompareIn Str NameLoad CompareIn Str NameLoad body Expr Call AttributeLoad SubscriptLoad NameLoad Index Str attr NameLoad orelse Assign SubscriptStore NameLoad Index NameLoad NameLoad AugAssignAdd NameStore Num If UnaryOpNot CompareIn Str Call AttributeLoad NameLoad attr body Assign SubscriptStore NameLoad Index Str Num If UnaryOpNot CompareIn Str Call AttributeLoad NameLoad attr body Assign SubscriptStore NameLoad Index Str Num For NameStore Call NameLoad Num NameLoad body Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call NameLoad NameLoad If UnaryOpNot Call NameLoad GeneratorExp Call AttributeLoad NameLoad attr NameLoad comprehension NameStore NameLoad body TryExcept body Assign NameStore Dict FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr NameLoad Return Call AttributeLoad Call AttributeLoad Call AttributeLoad Call NameLoad NameLoad attr attr Str Str attr Str Str decorator_list For NameStore ListLoad Str Str Str Str Str Str body If CompareGt SubscriptLoad NameLoad Index NameLoad Num body Assign SubscriptStore NameLoad Index NameLoad Call NameLoad SubscriptLoad NameLoad Index SubscriptLoad NameLoad Index NameLoad If CompareEq SubscriptLoad NameLoad Index NameLoad Str body Assign SubscriptStore NameLoad Index NameLoad Num Assign SubscriptStore NameLoad Index Str ListComp Call AttributeLoad NameLoad attr SubscriptLoad NameLoad Index NameLoad comprehension NameStore SubscriptLoad NameLoad Index Str UnaryOpNot Call AttributeLoad NameLoad attr SubscriptLoad NameLoad Index NameLoad Assign SubscriptStore NameLoad Index Str SubscriptLoad NameLoad Slice Num Num Expr Call AttributeLoad NameLoad attr NameLoad Assign NameStore Num If CompareLt Call NameLoad SubscriptLoad NameLoad Index Str Num body If CompareLt Call NameLoad SubscriptLoad NameLoad Index Str Num body Assign NameStore Str orelse Assign NameStore Str orelse Assign NameStore Str Assign NameStore Num Expr Call AttributeLoad NameLoad attr TupleLoad SubscriptLoad NameLoad Index Str SubscriptLoad NameLoad Index Str Call AttributeLoad Call AttributeLoad Call AttributeLoad SubscriptLoad NameLoad Index Str attr attr Str Str attr Str Str NameLoad Call NameLoad NameLoad handlers ExceptHandler body Raise Pass Assign NameStore Call NameLoad NameLoad keyword Lambda arguments args NameParam defaults BinOpAdd BinOpAdd BinOpAdd BinOpAdd SubscriptLoad NameLoad Index Num Str SubscriptLoad NameLoad Index Num Str SubscriptLoad NameLoad Index Num Assign NameStore ListLoad Assign NameStore Call NameLoad Assign NameStore Num For NameStore NameLoad body If UnaryOpNot CompareIn NameLoad NameLoad body Expr Call AttributeLoad NameLoad attr NameLoad AugAssignAdd NameStore Num Assign SubscriptStore NameLoad Index SubscriptLoad NameLoad Slice Num Num NameLoad If CompareEq BinOpMod NameLoad Num Num body Assign NameStore BinOpAdd BinOpAdd BinOpAdd Str Call NameLoad NameLoad Str Call NameLoad NameLoad Expr Call AttributeLoad AttributeLoad NameLoad attr attr BinOpAdd NameLoad BinOpMult Str Call NameLoad NameLoad Print BinOpAdd BinOpAdd BinOpAdd Str Call NameLoad NameLoad Str Call NameLoad NameLoad Assign NameStore Call NameLoad Str keyword Str Assign AttributeStore NameLoad attr ListLoad TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str Num TupleLoad Str TupleLoad Str Assign NameStore ListComp Call AttributeLoad Str attr BinOpAdd ListLoad Call NameLoad SubscriptLoad NameLoad Index SubscriptLoad NameLoad Slice Num ListComp BinOpMod Str NameLoad comprehension NameStore NameLoad comprehension NameStore NameLoad Assign AttributeStore NameLoad attr Str Assign AttributeStore NameLoad attr NameLoad Assign AttributeStore AttributeLoad NameLoad attr attr NameLoad Expr Call AttributeLoad AttributeLoad NameLoad attr attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Assign NameStore Call NameLoad Str keyword Str keyword NameLoad Assign AttributeStore NameLoad attr ListLoad TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str Num TupleLoad Str TupleLoad Str Num TupleLoad Str TupleLoad Str Assign NameStore ListLoad Assign NameStore ListLoad For NameStore NameLoad body TryExcept body Assign NameStore SubscriptLoad NameLoad Index Str handlers ExceptHandler type NameLoad body Assign NameStore Str Assign NameStore ListLoad SubscriptLoad NameLoad Index Str SubscriptLoad NameLoad Index TupleLoad SubscriptLoad NameLoad Index Str SubscriptLoad NameLoad Index Str Call AttributeLoad SubscriptLoad NameLoad Index Str attr SubscriptLoad NameLoad Index Str NameLoad TryExcept body Expr Call AttributeLoad NameLoad attr ListComp Call NameLoad NameLoad comprehension NameStore BinOpAdd NameLoad ListLoad SubscriptLoad NameLoad Index Str handlers ExceptHandler type NameLoad body Pass For NameStore SubscriptLoad NameLoad Index Str body Assign NameStore BinOpAdd NameLoad ListLoad NameLoad Expr Call AttributeLoad NameLoad attr ListComp Call NameLoad NameLoad comprehension NameStore NameLoad Assign NameStore ListComp Call AttributeLoad Str attr NameLoad comprehension NameStore NameLoad Assign AttributeStore AttributeLoad NameLoad attr attr NameLoad Expr Call AttributeLoad AttributeLoad NameLoad attr attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Assign NameStore Call NameLoad Str keyword Str keyword NameLoad Assign AttributeStore NameLoad attr ListLoad TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str TupleLoad Str Num TupleLoad Str TupleLoad Str Num TupleLoad Str TupleLoad Str Assign NameStore ListComp Call AttributeLoad Str attr NameLoad comprehension NameStore NameLoad Assign AttributeStore AttributeLoad NameLoad attr attr NameLoad Expr Call AttributeLoad AttributeLoad NameLoad attr attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr NameLoad Return AttributeLoad NameLoad attr decorator_list decorator_list Assign NameStore Call NameLoad
N/A N/A Retriever script for Alwyn H. Gentry Forest Transect Dataset

 N/A os N/A sys N/A zipfile N/A xlrd retriever.lib.templates Script retriever.lib.models Table retriever.lib.excel Excel N/A VERSION 1.0.1 N/A TAX_GROUPS 9756 main N/A Script N/A __init__ N/A N/A self N/A kwargs N/A N/A N/A N/A Script __init__ self kwargs N/A N/A self name Alwyn H. Gentry Forest Transect Dataset N/A N/A self shortname Gentry N/A N/A self urls N/A stems sites species counts http://www.mobot.org/mobot/gentry/123/all_Excel.zip http://www.ecologicaldata.org/sites/default/files/gentry_sites_data.txt N/A N/A self tags N/A Taxon > Plants Spatial Scale > Global Data Type > Observational N/A N/A self ref http://www.wlbcenter.org/gentry_data.htm N/A N/A self addendum Researchers who make use of the data in publications are requested to acknowledge Alwyn H. Gentry, the Missouri Botanical Garden, and collectors who assisted Gentry or contributed data for specific sites. It is also requested that a reprint of any publication making use of the Gentry Forest Transect Data be sent to:

Bruce E. Ponman
Missouri Botanical Garden
P.O. Box 299
St. Louis, MO 63166-0299
U.S.A.  N/A download N/A N/A self engine debug N/A None False N/A N/A N/A N/A Script download self engine debug N/A N/A N/A N/A self engine auto_create_table N/A Table sites url N/A N/A self urls N/A sites N/A N/A N/A N/A self engine insert_data_from_url N/A N/A self urls N/A sites N/A N/A N/A N/A self engine download_file N/A N/A self urls N/A stems all_Excel.zip N/A local_zip N/A N/A zipfile ZipFile N/A N/A N/A self engine format_filename all_Excel.zip N/A filelist N/A N/A local_zip namelist N/A N/A N/A local_zip close N/A N/A N/A N/A self engine download_files_from_archive N/A N/A self urls N/A stems filelist N/A filelist N/A N/A N/A N/A os path basename filename N/A filename filelist N/A N/A N/A N/A N/A self engine find_file CURUYUQU.xls N/A N/A N/A N/A N/A self engine download_file http://www.mobot.org/mobot/gentry/123/samerica/CURUYUQU.xls CURUYUQU.xls clean_line_endings False N/A N/A N/A filelist append CURUYUQU.xls N/A lines N/A N/A tax N/A N/A filename filelist N/A N/A N/A N/A Extracting data from  filename ... N/A book N/A N/A xlrd open_workbook N/A N/A N/A self engine format_filename filename N/A sh N/A N/A book sheet_by_index 0 N/A rows N/A sh nrows N/A cn N/A stems N/A N/A n 0 N/A N/A colnum c N/A enumerate N/A N/A sh row 0 N/A N/A N/A N/A N/A Excel empty_cell c N/A N/A cid N/A N/A N/A N/A Excel cell_value c lower N/A N/A cid N/A sub number N/A N/A cid line N/A N/A nd cid N/A N/A cid count N/A N/A N/A filename QUIAPACA.xls N/A colnum 13 N/A N/A cid count N/A N/A N/A stem cid N/A dbh cid N/A N/A N/A N/A N/A cn N/A stems append n N/A N/A N/A cn N/A cid n N/A n 1 N/A N/A N/A liana N/A N/A cn keys N/A N/A N/A cn N/A liana -1 N/A N/A N/A count N/A N/A cn keys N/A N/A N/A cn N/A count -1 N/A i N/A range 1 rows N/A N/A row N/A N/A sh row i N/A cellcount N/A len row N/A N/A N/A all N/A N/A N/A Excel empty_cell cell N/A cell row N/A N/A N/A N/A this_line N/A format_value N/A N/A s N/A N/A N/A s N/A N/A Excel cell_value s N/A N/A N/A N/A N/A N/A N/A N/A str s title replace \ / replace " N/A N/A i N/A line family genus species liana count N/A N/A N/A N/A cn N/A i -1 N/A N/A N/A this_line N/A i N/A format_value N/A row N/A N/A cn N/A i N/A N/A N/A this_line N/A i ` N/A N/A N/A this_line N/A i 1 N/A N/A this_line N/A stems N/A N/A N/A Excel cell_value N/A row N/A c N/A c N/A cn N/A stems N/A N/A N/A Excel empty_cell N/A row N/A c N/A N/A this_line N/A site N/A filename N/A 0 -4 N/A N/A N/A lines append this_line N/A full_id 0 N/A N/A N/A len N/A this_line N/A species 3 N/A N/A N/A N/A len N/A this_line N/A genus 3 N/A N/A id_level family N/A N/A id_level genus N/A N/A id_level species N/A full_id 1 N/A N/A N/A tax append N/A N/A this_line N/A family N/A this_line N/A genus N/A N/A N/A N/A N/A N/A N/A this_line N/A species lower replace \ replace " id_level N/A str full_id N/A N/A N/A N/A N/A N/A tax N/A sorted tax key N/A N/A N/A group N/A N/A N/A N/A N/A N/A group N/A 0 N/A group N/A 1 N/A group N/A 2 N/A unique_tax N/A N/A tax_dict N/A dict N/A tax_count 0 N/A group tax N/A N/A N/A N/A group unique_tax N/A N/A N/A N/A unique_tax append group N/A tax_count 1 N/A N/A tax_dict N/A N/A group N/A 0 3 tax_count N/A N/A N/A tax_count 10 0 N/A N/A msg N/A N/A N/A Generating taxonomic groups:  N/A str tax_count  /  N/A str TAX_GROUPS N/A N/A N/A N/A sys stdout write N/A msg N/A N/A len msg N/A N/A N/A N/A Generating taxonomic groups:  N/A str TAX_GROUPS  /  N/A str TAX_GROUPS N/A table N/A Table species delimiter , N/A N/A table columns N/A N/A species_id N/A pk-int N/A family N/A char N/A genus N/A char N/A species N/A char N/A id_level N/A char 10 N/A full_id N/A bool N/A data N/A N/A N/A , join N/A N/A N/A str N/A tax_dict N/A N/A group N/A 3 N/A N/A "%s" g N/A g group N/A group unique_tax N/A N/A table pk species_id N/A N/A table contains_pk True N/A N/A N/A self engine table table N/A N/A N/A N/A self engine create_table N/A N/A N/A N/A self engine add_to_table data N/A table N/A Table stems delimiter , contains_pk False N/A N/A table columns N/A N/A stem_id N/A pk-auto N/A line N/A int N/A species_id N/A int N/A site_code N/A char 12 N/A liana N/A char 10 N/A stem N/A double N/A stems N/A N/A counts N/A N/A line lines N/A N/A N/A N/A liana N/A line N/A liana N/A N/A N/A KeyError N/A N/A liana N/A species_info N/A N/A line N/A line N/A tax_dict N/A N/A N/A line N/A family N/A line N/A genus N/A N/A N/A line N/A species lower N/A line N/A site liana N/A N/A N/A N/A N/A counts append N/A N/A str value N/A value N/A species_info N/A N/A line N/A count N/A N/A N/A KeyError N/A N/A N/A i N/A line N/A stems N/A N/A stem N/A species_info N/A i N/A N/A N/A stems append N/A N/A str value N/A value stem N/A data N/A N/A N/A , join stem N/A stem stems N/A N/A N/A self engine table table N/A N/A N/A N/A self engine create_table N/A N/A N/A N/A self engine add_to_table data N/A table N/A Table counts delimiter , contains_pk False N/A N/A table columns N/A N/A count_id N/A pk-auto N/A line N/A int N/A species_id N/A int N/A site_code N/A char 12 N/A liana N/A char 10 N/A count N/A double N/A data N/A N/A N/A , join count N/A count counts N/A N/A N/A self engine table table N/A N/A N/A N/A self engine create_table N/A N/A N/A N/A self engine add_to_table data N/A N/A self engine N/A N/A N/A SCRIPT N/A main