Module Expr Str Import alias Import alias ImportFrom alias Import alias ImportFrom alias alias ClassDef bases AttributeLoad NameLoad attr body FunctionDef arguments args NameParam defaults body Assign AttributeStore NameLoad attr Dict Str Str Str ListLoad Num Num Num Num Num ListLoad Num Num Num Num Num ListLoad Num Num Num Num Num Assign NameStore Call AttributeLoad NameLoad attr ListLoad ListLoad Num Num ListLoad Num Num ListLoad Num Num ListLoad Num Num ListLoad Num Num Assign NameStore BinOpAdd NameLoad Call AttributeLoad NameLoad attr ListLoad Num Num Assign NameStore BinOpAdd NameLoad Call AttributeLoad NameLoad attr ListLoad Num Num Assign AttributeStore NameLoad attr Call AttributeLoad NameLoad attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr Call AttributeLoad NameLoad attr Expr Call AttributeLoad AttributeLoad NameLoad attr attr Call AttributeLoad NameLoad attr Assign AttributeStore NameLoad attr Call NameLoad Call AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr AttributeLoad NameLoad attr decorator_list NameLoad FunctionDef arguments args NameParam defaults body Assign NameStore ListLoad ListLoad Num Num ListLoad Num Num ListLoad Num Num Assign NameStore Call AttributeLoad NameLoad attr Call AttributeLoad AttributeLoad AttributeLoad NameLoad attr attr attr NameLoad Expr Call AttributeLoad NameLoad attr NameLoad Call NameLoad AttributeLoad NameLoad attr AttributeLoad NameLoad attr Num decorator_list FunctionDef arguments args NameParam defaults body Assign TupleStore NameStore NameStore NameStore Call NameLoad SubscriptLoad AttributeLoad NameLoad attr Index Str AttributeLoad NameLoad attr Assign NameStore ListLoad Num Num Num Num Num Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr TupleLoad NameLoad NameLoad NameLoad TupleLoad NameLoad NameLoad NameLoad decorator_list decorator_list If CompareEq NameLoad Str body Expr Call AttributeLoad NameLoad attr
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Created on 12/06/2012

@author: victor
 N/A unittest N/A numpy pyRMSD.condensedMatrix CondensedMatrix N/A scipy.spatial.distance pyproct.postprocess.actions.confSpaceComparison.tools calculate_mean_center_differences calculate_distance_stats Test N/A N/A unittest TestCase N/A setUpClass N/A N/A cls N/A N/A N/A N/A cls decomposed_cluster N/A traj_A traj_B traj_C N/A 0 1 2 3 4 N/A 5 6 7 8 9 N/A 10 11 12 13 14 N/A square_points N/A N/A numpy array N/A N/A 0 0 N/A 0 2 N/A 2 0 N/A 2 2 N/A 1 1 N/A square_points_2 N/A square_points N/A N/A numpy array N/A 0 5 N/A square_points_3 N/A square_points N/A N/A numpy array N/A 5 0 N/A N/A cls square_points N/A N/A square_points tolist N/A N/A N/A N/A cls square_points extend N/A N/A square_points_2 tolist N/A N/A N/A N/A cls square_points extend N/A N/A square_points_3 tolist N/A N/A cls matrix N/A CondensedMatrix N/A N/A N/A N/A scipy spatial distance pdist N/A cls square_points N/A classmethod test_calculate_mean_centers_difference N/A N/A self N/A N/A N/A expected_medoids N/A N/A 1 1 N/A 1 6 N/A 6 1 N/A expected_mean N/A N/A numpy mean N/A N/A N/A N/A scipy spatial distance pdist expected_medoids N/A N/A N/A self assertAlmostEqual expected_mean N/A calculate_mean_center_differences N/A self decomposed_cluster N/A self matrix 8 N/A test_calculate_distance_stats N/A N/A self N/A N/A N/A N/A calc_mean calc_std calc_radius N/A calculate_distance_stats N/A N/A self decomposed_cluster N/A traj_A N/A self matrix N/A distances N/A 1.41421353817 1.41421353817 1.41421353817 1.41421353817 0.0 N/A expected_mean N/A N/A numpy mean distances N/A expected_std N/A N/A numpy std distances N/A expected_radius N/A N/A numpy max distances N/A N/A N/A self assertItemsEqual N/A expected_mean expected_std expected_radius N/A calc_mean calc_std calc_radius N/A N/A N/A N/A __name__ __main__ N/A N/A N/A N/A unittest main