Module Expr Str Import alias Import alias Import alias ImportFrom alias Import alias identifier ImportFrom alias Expr Call NameLoad Import alias identifier Import alias identifier Import alias identifier Import alias identifier Import alias identifier Import alias identifier Assign NameStore Str Assign NameStore Str ClassDef bases AttributeLoad NameLoad attr body FunctionDef arguments args NameParam defaults body Assign NameStore Str Assign NameStore Call AttributeLoad NameLoad attr FunctionDef arguments args NameParam NameParam defaults body Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr decorator_list Expr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad Call AttributeLoad NameLoad attr Num Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr Index Num Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Str Assign NameStore Call AttributeLoad NameLoad attr FunctionDef arguments args NameParam NameParam defaults body Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr decorator_list Expr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad Call AttributeLoad NameLoad attr Num Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr Index Num Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Str Assign NameStore Call AttributeLoad NameLoad attr FunctionDef arguments args NameParam NameParam defaults body Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr decorator_list Expr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad Call AttributeLoad NameLoad attr Num Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr Index Num Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Str Assign NameStore Call AttributeLoad NameLoad attr FunctionDef arguments args NameParam NameParam defaults body Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr decorator_list Expr Call AttributeLoad NameLoad attr NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad Call AttributeLoad NameLoad attr Num Assign NameStore SubscriptLoad Call AttributeLoad NameLoad attr Index Num Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr Str Expr Call AttributeLoad NameLoad attr AttributeLoad NameLoad attr decorator_list FunctionDef arguments args NameParam defaults body Assign NameStore Call AttributeLoad NameLoad attr Assign AttributeStore AttributeLoad NameLoad attr attr NameLoad Assign AttributeStore AttributeLoad NameLoad attr attr NameLoad Assign NameStore Call AttributeLoad NameLoad attr NameLoad Assign NameStore ListLoad TupleLoad AttributeLoad NameLoad attr BinOpMod AttributeLoad AttributeLoad NameLoad attr attr NameLoad AttributeLoad NameLoad attr TupleLoad NameLoad AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr TupleLoad NameLoad AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr TupleLoad NameLoad AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad NameLoad attr TupleLoad NameLoad BinOpMod AttributeLoad AttributeLoad NameLoad attr attr NameLoad AttributeLoad NameLoad attr TupleLoad NameLoad BinOpMod AttributeLoad AttributeLoad NameLoad attr attr NameLoad AttributeLoad NameLoad attr For NameStore NameLoad body Expr Call AttributeLoad NameLoad attr Call NameLoad ListComp Call NameLoad ListComp CompareEq SubscriptLoad NameLoad Index NameLoad SubscriptLoad NameLoad Index NameLoad comprehension NameStore Call NameLoad Num comprehension NameStore NameLoad BinOpMod Str NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad ListComp Str comprehension NameStore NameLoad Call NameLoad ListComp CompareEq SubscriptLoad NameLoad Index NameLoad SubscriptLoad NameLoad Index NameLoad comprehension NameStore Call NameLoad Num Num For NameStore NameLoad body Expr Call AttributeLoad NameLoad attr Call NameLoad ListComp Call NameLoad ListComp CompareEq SubscriptLoad NameLoad Index NameLoad SubscriptLoad NameLoad Index NameLoad comprehension NameStore Call NameLoad Num comprehension NameStore NameLoad BinOpMod Str NameLoad Assign NameStore Dict AttributeLoad NameLoad attr NameLoad NameLoad Str Dict AttributeLoad AttributeLoad NameLoad attr attr Str ListLoad NameLoad ListLoad Dict AttributeLoad AttributeLoad NameLoad attr attr Str ListLoad BinOpMod Str NameLoad ListLoad Dict AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad AttributeLoad NameLoad attr attr Str ListLoad AttributeLoad AttributeLoad NameLoad attr attr AttributeLoad AttributeLoad NameLoad attr attr ListLoad NameLoad ListLoad AttributeLoad AttributeLoad NameLoad attr attr ListLoad Dict For TupleStore NameStore NameStore Call AttributeLoad NameLoad attr body Assign NameStore Call AttributeLoad NameLoad attr NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad Call NameLoad ListComp NameLoad comprehension NameStore Call AttributeLoad NameLoad attr CompareNotEq NameLoad Str For NameStore NameLoad body Expr Call AttributeLoad NameLoad attr Call AttributeLoad NameLoad attr NameLoad For NameStore Call AttributeLoad NameLoad attr body If CompareNotEq NameLoad Str body Expr Call AttributeLoad NameLoad attr CompareIn NameLoad NameLoad For TupleStore NameStore NameStore Call AttributeLoad NameLoad attr body Assign NameStore Call AttributeLoad NameLoad attr NameLoad NameLoad NameLoad Expr Call AttributeLoad NameLoad attr Call NameLoad NameLoad Call NameLoad NameLoad For NameStore NameLoad body Expr Call AttributeLoad NameLoad attr CompareIn NameLoad NameLoad BinOpMod Str NameLoad For NameStore NameLoad body Expr Call AttributeLoad NameLoad attr CompareIn NameLoad NameLoad BinOpMod Str NameLoad decorator_list decorator_list
N/A N/A test_editobjectsmanually - test the EditObjectsManually module
 N/A base64 N/A unittest N/A zlib StringIO StringIO N/A numpy np cellprofiler.preferences set_headless N/A N/A set_headless N/A cellprofiler.workspace cpw N/A cellprofiler.pipeline cpp N/A cellprofiler.objects cpo N/A cellprofiler.cpimage cpi N/A cellprofiler.measurements cpmeas N/A cellprofiler.modules.editobjectsmanually E N/A INPUT_OBJECTS_NAME inputobjects N/A OUTPUT_OBJECTS_NAME outputobjects TestEditObjectsManually N/A N/A unittest TestCase N/A test_01_01_load_matlab N/A N/A self N/A N/A N/A data 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 N/A pipeline N/A N/A cpp Pipeline callback N/A N/A caller event N/A N/A N/A N/A N/A self assertFalse N/A isinstance event N/A cpp LoadExceptionEvent N/A N/A N/A N/A pipeline add_listener callback N/A N/A N/A pipeline load N/A StringIO N/A N/A zlib decompress N/A N/A base64 b64decode data N/A N/A N/A self assertEqual N/A len N/A N/A pipeline modules 3 N/A module N/A N/A N/A pipeline modules N/A -1 N/A N/A N/A self assertTrue N/A isinstance module N/A E EditObjectsManually N/A N/A N/A self assertEqual N/A module object_name Nuclei N/A N/A N/A self assertEqual N/A module filtered_objects FilteredNuclei N/A N/A N/A self assertFalse N/A module wants_outlines N/A N/A N/A self assertEqual N/A module renumber_choice N/A E R_RENUMBER N/A test_01_02_load_v1 N/A N/A self N/A N/A N/A data CellProfiler Pipeline: http://www.cellprofiler.org
Version:1
SVNRevision:9120

EditObjectsManually:[module_num:1|svn_version:\'1\'|variable_revision_number:1|show_window:True|notes:\x5B\x5D]
    Select the input objects:Nuclei
    Name the objects left after editing:EditedNuclei
    Do you want to save outlines of the edited objects?:Yes
    What do you want to call the outlines?:EditedNucleiOutlines
    Do you want to renumber the objects created by this module or retain the original numbering?:Renumber
 N/A pipeline N/A N/A cpp Pipeline callback N/A N/A caller event N/A N/A N/A N/A N/A self assertFalse N/A isinstance event N/A cpp LoadExceptionEvent N/A N/A N/A N/A pipeline add_listener callback N/A N/A N/A pipeline load N/A StringIO data N/A N/A N/A self assertEqual N/A len N/A N/A pipeline modules 1 N/A module N/A N/A N/A pipeline modules N/A 0 N/A N/A N/A self assertTrue N/A isinstance module N/A E EditObjectsManually N/A N/A N/A self assertEqual N/A module object_name Nuclei N/A N/A N/A self assertEqual N/A module filtered_objects EditedNuclei N/A N/A N/A self assertTrue N/A module wants_outlines N/A N/A N/A self assertEqual N/A module outlines_name EditedNucleiOutlines N/A N/A N/A self assertEqual N/A module renumber_choice N/A E R_RENUMBER N/A N/A N/A self assertFalse N/A module wants_image_display N/A test_01_03_load_v2 N/A N/A self N/A N/A N/A data CellProfiler Pipeline: http://www.cellprofiler.org
Version:1
SVNRevision:9120

EditObjectsManually:[module_num:1|svn_version:\'10039\'|variable_revision_number:2|show_window:True|notes:\x5B\x5D]
    Select the objects to be edited:Nuclei
    Name the edited objects:EditedNuclei
    Retain outlines of the edited objects?:No
    Name the outline image:EditedObjectOutlines
    Numbering of the edited objects:Retain
    Display a guiding image?:Yes
    Image name\x3A:DNA
 N/A pipeline N/A N/A cpp Pipeline callback N/A N/A caller event N/A N/A N/A N/A N/A self assertFalse N/A isinstance event N/A cpp LoadExceptionEvent N/A N/A N/A N/A pipeline add_listener callback N/A N/A N/A pipeline load N/A StringIO data N/A N/A N/A self assertEqual N/A len N/A N/A pipeline modules 1 N/A module N/A N/A N/A pipeline modules N/A 0 N/A N/A N/A self assertTrue N/A isinstance module N/A E EditObjectsManually N/A N/A N/A self assertEqual N/A module object_name Nuclei N/A N/A N/A self assertEqual N/A module filtered_objects EditedNuclei N/A N/A N/A self assertFalse N/A module wants_outlines N/A N/A N/A self assertEqual N/A module renumber_choice N/A E R_RETAIN N/A N/A N/A self assertTrue N/A module wants_image_display N/A N/A N/A self assertEqual N/A module image_name DNA N/A N/A N/A self assertFalse N/A module allow_overlap N/A test_01_04_load_v3 N/A N/A self N/A N/A N/A data CellProfiler Pipeline: http://www.cellprofiler.org
Version:1
SVNRevision:9120

EditObjectsManually:[module_num:1|svn_version:\'10039\'|variable_revision_number:3|show_window:True|notes:\x5B\x5D]
    Select the objects to be edited:Nuclei
    Name the edited objects:EditedNuclei
    Retain outlines of the edited objects?:No
    Name the outline image:EditedObjectOutlines
    Numbering of the edited objects:Retain
    Display a guiding image?:Yes
    Image name\x3A:DNA
    Allow overlapping objects:Yes
 N/A pipeline N/A N/A cpp Pipeline callback N/A N/A caller event N/A N/A N/A N/A N/A self assertFalse N/A isinstance event N/A cpp LoadExceptionEvent N/A N/A N/A N/A pipeline add_listener callback N/A N/A N/A pipeline load N/A StringIO data N/A N/A N/A self assertEqual N/A len N/A N/A pipeline modules 1 N/A module N/A N/A N/A pipeline modules N/A 0 N/A N/A N/A self assertTrue N/A isinstance module N/A E EditObjectsManually N/A N/A N/A self assertEqual N/A module object_name Nuclei N/A N/A N/A self assertEqual N/A module filtered_objects EditedNuclei N/A N/A N/A self assertFalse N/A module wants_outlines N/A N/A N/A self assertEqual N/A module renumber_choice N/A E R_RETAIN N/A N/A N/A self assertTrue N/A module wants_image_display N/A N/A N/A self assertEqual N/A module image_name DNA N/A N/A N/A self assertTrue N/A module allow_overlap N/A test_02_02_measurements N/A N/A self N/A N/A N/A module N/A N/A E EditObjectsManually N/A N/A N/A module object_name value INPUT_OBJECTS_NAME N/A N/A N/A module filtered_objects value OUTPUT_OBJECTS_NAME N/A columns N/A N/A module get_measurement_columns None N/A expected_columns N/A N/A N/A cpmeas IMAGE N/A N/A N/A E I FF_COUNT OUTPUT_OBJECTS_NAME N/A cpmeas COLTYPE_INTEGER N/A OUTPUT_OBJECTS_NAME N/A N/A E I M_NUMBER_OBJECT_NUMBER N/A cpmeas COLTYPE_INTEGER N/A OUTPUT_OBJECTS_NAME N/A N/A E I M_LOCATION_CENTER_X N/A cpmeas COLTYPE_FLOAT N/A OUTPUT_OBJECTS_NAME N/A N/A E I M_LOCATION_CENTER_Y N/A cpmeas COLTYPE_FLOAT N/A OUTPUT_OBJECTS_NAME N/A N/A N/A E I FF_PARENT INPUT_OBJECTS_NAME N/A cpmeas COLTYPE_INTEGER N/A INPUT_OBJECTS_NAME N/A N/A N/A E I FF_CHILDREN_COUNT OUTPUT_OBJECTS_NAME N/A cpmeas COLTYPE_INTEGER N/A column columns N/A N/A N/A N/A self assertTrue N/A any N/A N/A all N/A N/A N/A column N/A i N/A expected N/A i N/A i N/A range 3 N/A expected expected_columns N/A Unexpected column: %s, %s, %s column N/A N/A N/A self assertEqual N/A len N/A x N/A c columns N/A all N/A N/A N/A column N/A i N/A c N/A i N/A i N/A range 3 1 N/A expected expected_columns N/A N/A N/A N/A self assertTrue N/A any N/A N/A all N/A N/A N/A column N/A i N/A expected N/A i N/A i N/A range 3 N/A column columns N/A Missing column: %s, %s, %s expected N/A d N/A N/A cpmeas IMAGE INPUT_OBJECTS_NAME OUTPUT_OBJECTS_NAME Foo N/A N/A N/A E I C_COUNT Foo N/A OUTPUT_OBJECTS_NAME N/A N/A N/A N/A E I C_CHILDREN Foo N/A N/A %s_Count OUTPUT_OBJECTS_NAME N/A N/A N/A N/A E I C_LOCATION N/A N/A E I C_PARENT N/A N/A E I C_NUMBER Foo N/A N/A N/A E I FTR_CENTER_X N/A N/A E I FTR_CENTER_Y N/A INPUT_OBJECTS_NAME N/A N/A N/A E I FTR_OBJECT_NUMBER N/A N/A N/A N/A object_name category_d N/A N/A d iteritems N/A N/A categories N/A N/A module get_categories None object_name N/A N/A N/A self assertEqual N/A len categories N/A len N/A k N/A k N/A N/A category_d keys N/A k Foo N/A category categories N/A N/A N/A N/A self assertTrue N/A N/A category_d has_key category N/A category N/A N/A category_d keys N/A N/A N/A category Foo N/A N/A N/A N/A self assertTrue N/A category categories N/A N/A category expected_features N/A N/A category_d iteritems N/A N/A features N/A N/A module get_measurements None object_name category N/A N/A N/A self assertEqual N/A len features N/A len expected_features N/A feature features N/A N/A N/A N/A self assertTrue N/A feature expected_features N/A Unexpected feature: %s feature N/A feature expected_features N/A N/A N/A N/A self assertTrue N/A feature features N/A Missing feature: %s feature N/A N/A