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https://api.github.com/repos/huggingface/datasets/issues/127 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/127/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/127/comments | https://api.github.com/repos/huggingface/datasets/issues/127/events | https://github.com/huggingface/datasets/pull/127 | 618,909,042 | MDExOlB1bGxSZXF1ZXN0NDE4NTQ1MDcy | 127 | Update Overview.ipynb | {
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} | Remove webis from dataset folder.
Our first dataset script that only lives on AWS :-) https://s3.console.aws.amazon.com/s3/buckets/datasets.huggingface.co/nlp/datasets/webis/tl_dr/?region=us-east-1 @julien-c @jplu | {
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"For each dataset, If there exist a `dataset_info.json`, then the command `nlp-cli test path/to/my/dataset --al_configs` is successful only if the `dataset_infos.json` is correct. The infos are correct if the size and checksums of the downloaded file are correct, and if the number of examples in each split are correct.\r\n\r\nNote: the `test` command is supposed to test the script, that's why it runs the script even if the cached files already exist. Let me know if it's good to you.",
"> For each dataset, If there exist a `dataset_info.json`, then the command `nlp-cli test path/to/my/dataset --al_configs` is successful only if the `dataset_infos.json` is correct. The infos are correct if the size and checksums of the downloaded file are correct, and if the number of examples in each split are correct.\r\n> \r\n> Note: the `test` command is supposed to test the script, that's why it runs the script even if the cached files already exist. Let me know if it's good to you.\r\n\r\nDoes it have to download the whole data to check if the checksums are correct? I guess so no? ",
"> > For each dataset, If there exist a `dataset_info.json`, then the command `nlp-cli test path/to/my/dataset --al_configs` is successful only if the `dataset_infos.json` is correct. The infos are correct if the size and checksums of the downloaded file are correct, and if the number of examples in each split are correct.\r\n> > Note: the `test` command is supposed to test the script, that's why it runs the script even if the cached files already exist. Let me know if it's good to you.\r\n> \r\n> Does it have to download the whole data to check if the checksums are correct? I guess so no?\r\n\r\nYes it has to download them all (unless they were already downloaded in which case it just uses the cached downloaded files)."
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} | ## Change default Test from local => aws
As a default we set` aws=True`, `Local=False`, `slow=False`
### 1. RUN_AWS=1 (default)
This runs 4 tests per dataset script.
a) Does the dataset script have a valid etag / Can it be reached on AWS?
b) Can we load its `builder_class`?
c) Can we load **all** dataset configs?
d) _Most importantly_: Can we load the dataset?
Important - we currently only test the first config of each dataset to reduce test time. Total test time is around 1min20s.
### 2. RUN_LOCAL=1 RUN_AWS=0
***This should be done when debugging dataset scripts of the ./datasets folder***
This only runs 1 test per dataset test, which is equivalent to aws d) - Can we load the dataset from the local `datasets` directory?
### 3. RUN_SLOW=1
We should set up to run these tests maybe 1 time per week ? @thomwolf
The `slow` tests include two more important tests.
e) Can we load the dataset with all possible configs? This test will probably fail at the moment because a lot of dummy data is missing. We should add the dummy data step by step to be sure that all configs work.
f) Test that the actual dataset can be loaded. This will take quite some time to run, but is important to make sure that the "real" data can be loaded. It will also test whether the dataset script has the correct checksums file which is currently not tested with `aws=True`. @lhoestq - is there an easy way to check cheaply whether the `dataset_info.json` is correct for each dataset script? | {
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https://api.github.com/repos/huggingface/datasets/issues/120 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/120/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/120/comments | https://api.github.com/repos/huggingface/datasets/issues/120/events | https://github.com/huggingface/datasets/issues/120 | 618,737,783 | MDU6SXNzdWU2MTg3Mzc3ODM= | 120 | 🐛 `map` not working | {
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"I didn't assign the output 🤦♂️\r\n\r\n```python\r\ndataset.map(test)\r\n```\r\n\r\nshould be :\r\n\r\n```python\r\ndataset = dataset.map(test)\r\n```"
] | 1,589,524,988,000 | 1,589,526,158,000 | 1,589,526,158,000 | NONE | null | null | {
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} | I'm trying to run a basic example (mapping function to add a prefix).
[Here is the colab notebook I'm using.](https://colab.research.google.com/drive/1YH4JCAy0R1MMSc-k_Vlik_s1LEzP_t1h?usp=sharing)
```python
import nlp
dataset = nlp.load_dataset('squad', split='validation[:10%]')
def test(sample):
sample['title'] = "test prefix @@@ " + sample["title"]
return sample
print(dataset[0]['title'])
dataset.map(test)
print(dataset[0]['title'])
```
Output :
> Super_Bowl_50
Super_Bowl_50
Expected output :
> Super_Bowl_50
test prefix @@@ Super_Bowl_50 | {
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"It's strange, after installing `nlp` on Colab, the `pyarrow` version seems fine from `pip` but not from python :\r\n\r\n```python\r\nimport pyarrow\r\n\r\n!pip show pyarrow\r\nprint(\"version = {}\".format(pyarrow.__version__))\r\n```\r\n\r\n> Name: pyarrow\r\nVersion: 0.17.0\r\nSummary: Python library for Apache Arrow\r\nHome-page: https://arrow.apache.org/\r\nAuthor: None\r\nAuthor-email: None\r\nLicense: Apache License, Version 2.0\r\nLocation: /usr/local/lib/python3.6/dist-packages\r\nRequires: numpy\r\nRequired-by: nlp, feather-format\r\n> \r\n> version = 0.14.1",
"Ok I just had to restart the runtime after installing `nlp`. After restarting, the version of `pyarrow` is fine."
] | 1,589,509,646,000 | 1,589,519,482,000 | 1,589,510,728,000 | NONE | null | null | {
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[Colab notebook](https://colab.research.google.com/drive/11Mf7iNhIyt6GpgA1dBEtg3cyMHmMhtZS?usp=sharing)
But I meet this error :
> AttributeError: type object 'pyarrow.lib.RecordBatch' has no attribute 'from_struct_array'
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https://api.github.com/repos/huggingface/datasets/issues/118 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/118/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/118/comments | https://api.github.com/repos/huggingface/datasets/issues/118/events | https://github.com/huggingface/datasets/issues/118 | 618,643,088 | MDU6SXNzdWU2MTg2NDMwODg= | 118 | ❓ How to apply a map to all subsets ? | {
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"That's the way!"
] | 1,589,507,932,000 | 1,589,526,349,000 | 1,589,526,265,000 | NONE | null | null | {
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} | I'm working with CNN/DM dataset, where I have 3 subsets : `train`, `test`, `validation`.
Should I apply my map function on the subsets one by one ?
```python
import nlp
cnn_dm = nlp.load_dataset('cnn_dailymail')
for corpus in ['train', 'test', 'validation']:
cnn_dm[corpus] = cnn_dm[corpus].map(my_func)
```
Or is there a better way to do this ? | {
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https://api.github.com/repos/huggingface/datasets/issues/117 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/117/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/117/comments | https://api.github.com/repos/huggingface/datasets/issues/117/events | https://github.com/huggingface/datasets/issues/117 | 618,632,573 | MDU6SXNzdWU2MTg2MzI1NzM= | 117 | ❓ How to remove specific rows of a dataset ? | {
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"Hi, you can't do that at the moment."
] | 1,589,505,906,000 | 1,620,964,939,000 | 1,589,526,272,000 | NONE | null | null | {
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} | I saw on the [example notebook](https://colab.research.google.com/github/huggingface/nlp/blob/master/notebooks/Overview.ipynb#scrollTo=efFhDWhlvSVC) how to remove a specific column :
```python
dataset.drop('id')
```
But I didn't find how to remove a specific row.
**For example, how can I remove all sample with `id` < 10 ?** | {
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https://api.github.com/repos/huggingface/datasets/issues/116 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/116/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/116/comments | https://api.github.com/repos/huggingface/datasets/issues/116/events | https://github.com/huggingface/datasets/issues/116 | 618,628,264 | MDU6SXNzdWU2MTg2MjgyNjQ= | 116 | 🐛 Trying to use ROUGE metric : pyarrow.lib.ArrowInvalid: Column 1 named references expected length 534 but got length 323 | {
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"Can you share your data files or a minimally reproducible example?",
"Sure, [here is a Colab notebook](https://colab.research.google.com/drive/1uiS89fnHMG7HV_cYxp3r-_LqJQvNNKs9?usp=sharing) reproducing the error.\r\n\r\n> ArrowInvalid: Column 1 named references expected length 36 but got length 56",
"This is because `add` takes as input a batch of elements and you provided only one. I think we should have `add` for one prediction/reference and `add_batch` for a batch of predictions/references. This would make it more coherent with the way we use Arrow.\r\n\r\nLet me do this change",
"Thanks for noticing though. I was mainly used to do `.compute` directly ^^",
"Thanks @lhoestq it works :)"
] | 1,589,505,126,000 | 1,590,709,387,000 | 1,590,709,387,000 | NONE | null | null | {
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} | I'm trying to use rouge metric.
I have to files : `test.pred.tokenized` and `test.gold.tokenized` with each line containing a sentence.
I tried :
```python
import nlp
rouge = nlp.load_metric('rouge')
with open("test.pred.tokenized") as p, open("test.gold.tokenized") as g:
for lp, lg in zip(p, g):
rouge.add(lp, lg)
```
But I meet following error :
> pyarrow.lib.ArrowInvalid: Column 1 named references expected length 534 but got length 323
---
Full stack-trace :
```
Traceback (most recent call last):
File "<stdin>", line 3, in <module>
File "/home/me/.venv/transformers/lib/python3.6/site-packages/nlp/metric.py", line 224, in add
self.writer.write_batch(batch)
File "/home/me/.venv/transformers/lib/python3.6/site-packages/nlp/arrow_writer.py", line 148, in write_batch
pa_table: pa.Table = pa.Table.from_pydict(batch_examples, schema=self._schema)
File "pyarrow/table.pxi", line 1550, in pyarrow.lib.Table.from_pydict
File "pyarrow/table.pxi", line 1503, in pyarrow.lib.Table.from_arrays
File "pyarrow/public-api.pxi", line 390, in pyarrow.lib.pyarrow_wrap_table
File "pyarrow/error.pxi", line 85, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: Column 1 named references expected length 534 but got length 323
```
(`nlp` installed from source) | {
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"I could access the info by first accessing the different splits :\r\n\r\n```python\r\nimport nlp\r\n\r\ncnn_dm = nlp.load_dataset('cnn_dailymail')\r\nprint(cnn_dm['train'].info)\r\n```\r\n\r\nInformation seems to be duplicated between the subsets :\r\n\r\n```python\r\nprint(cnn_dm[\"train\"].info == cnn_dm[\"test\"].info == cnn_dm[\"validation\"].info)\r\n# True\r\n```\r\n\r\nIs it expected ?",
"Good point @Colanim ! What happens under the hood when running:\r\n\r\n```python\r\nimport nlp\r\n\r\ncnn_dm = nlp.load_dataset('cnn_dailymail')\r\n```\r\n\r\nis that for every split in `cnn_dailymail`, a different dataset object (which all holds the same info) is created. This has the advantages that the datasets are easily separable in a training setup. \r\nAlso note that you can load e.g. only the `train` split of the dataset via:\r\n\r\n```python\r\ncnn_dm_train = nlp.load_dataset('cnn_dailymail', split=\"train\")\r\nprint(cnn_dm_train.info)\r\n```\r\n\r\nI think we should make the `info` object slightly different when creating the dataset for each split - at the moment it contains for example the variable `splits` which should maybe be renamed to `split` and contain only one `SplitInfo` object ...\r\n"
] | 1,589,502,587,000 | 1,589,721,060,000 | 1,589,721,060,000 | NONE | null | null | {
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```python
cnn_dm = nlp.load_dataset('cnn_dailymail')
print(cnn_dm.info)
```
returns :
> AttributeError: 'dict' object has no attribute 'info' | {
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"Installing from source (instead of Pypi package) solved the problem."
] | 1,589,501,777,000 | 1,589,501,992,000 | 1,589,501,991,000 | NONE | null | null | {
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} | I can't get CNN / DailyMail dataset.
```python
import nlp
assert "cnn_dailymail" in [dataset.id for dataset in nlp.list_datasets()]
cnn_dm = nlp.load_dataset('cnn_dailymail')
```
[Colab notebook](https://colab.research.google.com/drive/1zQ3bYAVzm1h0mw0yWPqKAg_4EUlSx5Ex?usp=sharing)
gives following error :
```
ConnectionError: Couldn't reach https://s3.amazonaws.com/datasets.huggingface.co/nlp/cnn_dailymail/cnn_dailymail.py
``` | {
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} | Added dummy data test only for the first config. Will do the rest later.
I had to do add some minor hacks to an important function to make it work.
There might be a cleaner way to handle it - can you take a look @thomwolf ? | {
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"Awesome that's great!"
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"Nice - I think we can merge this. I will update the checksums for `wikihow` then as well"
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"> Wikihow is an example that needs to manually download two files as stated in: https://github.com/mahnazkoupaee/WikiHow-Dataset.\r\n> \r\n> The user can then store these files under a hard-coded name: `wikihowAll.csv` and `wikihowSep.csv` in this case in a directory of his choice, e.g. `~/wikihow/manual_dir`.\r\n> \r\n> The dataset can then be loaded via:\r\n> \r\n> ```python\r\n> import nlp\r\n> nlp.load_dataset(\"wikihow\", data_dir=\"~/wikihow/manual_dir\")\r\n> ```\r\n> \r\n> I added/changed so that there are explicit error messages when using manually downloaded files.\r\n\r\nwouldn't be nicer if we can have `manual_dir/wikihow`? ",
"> > Wikihow is an example that needs to manually download two files as stated in: https://github.com/mahnazkoupaee/WikiHow-Dataset.\r\n> > The user can then store these files under a hard-coded name: `wikihowAll.csv` and `wikihowSep.csv` in this case in a directory of his choice, e.g. `~/wikihow/manual_dir`.\r\n> > The dataset can then be loaded via:\r\n> > ```python\r\n> > import nlp\r\n> > nlp.load_dataset(\"wikihow\", data_dir=\"~/wikihow/manual_dir\")\r\n> > ```\r\n> > \r\n> > \r\n> > I added/changed so that there are explicit error messages when using manually downloaded files.\r\n> \r\n> wouldn't be nicer if we can have `manual_dir/wikihow`?\r\n\r\nSure, I mean the user can decide whatever he likes best :-) The path one puts in `data_dir` will be used as the path to the manual dir. `nlp.load_dataset(\"wikihow\", data_dir=\"~/manual_dir/wikihow\")` would work as well as any other path ;-) ",
"Perfect! You can merge!"
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The user can then store these files under a hard-coded name: `wikihowAll.csv` and `wikihowSep.csv` in this case in a directory of his choice, e.g. `~/wikihow/manual_dir`.
The dataset can then be loaded via:
```python
import nlp
nlp.load_dataset("wikihow", data_dir="~/wikihow/manual_dir")
```
I added/changed so that there are explicit error messages when using manually downloaded files.
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"Haha that cornell dialogue dataset - that ran for 3h on my computer as well. The `generate_examples` method in this script is one of the most inefficient code samples I've ever seen :D ",
"Indeed it's been 3 hours already\r\n```73111 examples [3:07:48, 2.40 examples/s]```"
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https://api.github.com/repos/huggingface/datasets/issues/100 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/100/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/100/comments | https://api.github.com/repos/huggingface/datasets/issues/100/events | https://github.com/huggingface/datasets/pull/100 | 618,081,602 | MDExOlB1bGxSZXF1ZXN0NDE3ODc1MjE2 | 100 | Add per type scores in seqeval metric | {
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"LGTM :-) Some small suggestions to shorten the code a bit :-) ",
"Can you put the kwargs as normal kwargs instead of a dict? (And add them to the kwargs description As well)",
"@thom Is-it what you meant?",
"Yes and there is a dynamically generated doc string in the metric script KWARGS DESCRIPTION"
] | 1,589,449,072,000 | 1,589,498,495,000 | 1,589,498,494,000 | CONTRIBUTOR | null | false | {
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} | This PR add a bit more detail in the seqeval metric. Now the usage and output are:
```python
import nlp
met = nlp.load_metric('metrics/seqeval')
references = [['O', 'O', 'O', 'B-MISC', 'I-MISC', 'I-MISC', 'O'], ['B-PER', 'I-PER', 'O']]
predictions = [['O', 'O', 'B-MISC', 'I-MISC', 'I-MISC', 'I-MISC', 'O'], ['B-PER', 'I-PER', 'O']]
met.compute(predictions, references)
#Output: {'PER': {'precision': 1.0, 'recall': 1.0, 'f1': 1.0, 'number': 1}, 'MISC': {'precision': 0.0, 'recall': 0.0, 'f1': 0, 'number': 1}, 'overall_precision': 0.5, 'overall_recall': 0.5, 'overall_f1': 0.5, 'overall_accuracy': 0.8}
```
It is also possible to compute scores for non IOB notations, POS tagging for example hasn't this kind of notation. Add `suffix` parameter:
```python
import nlp
met = nlp.load_metric('metrics/seqeval')
references = [['O', 'O', 'O', 'MISC', 'MISC', 'MISC', 'O'], ['PER', 'PER', 'O']]
predictions = [['O', 'O', 'MISC', 'MISC', 'MISC', 'MISC', 'O'], ['PER', 'PER', 'O']]
met.compute(predictions, references, metrics_kwargs={"suffix": True})
#Output: {'PER': {'precision': 1.0, 'recall': 1.0, 'f1': 1.0, 'number': 1}, 'MISC': {'precision': 0.0, 'recall': 0.0, 'f1': 0, 'number': 1}, 'overall_precision': 0.5, 'overall_recall': 0.5, 'overall_f1': 0.5, 'overall_accuracy': 0.9}
``` | {
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|
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"Should that rather be in an organization scope, @thomwolf @patrickvonplaten ?",
"> Should that rather be in an organization scope, @thomwolf @patrickvonplaten ?\r\n\r\nI'm a bit indifferent - both would be fine for me!",
"@jplu - if creating the dummy_data is too tedious, I can do it as well :-) ",
"There is dummy_data here, no ?",
"Yeah I think naming it webis/tl_dr would be best @jplu if that works for you",
"No problem at all!! On it^^",
"> There is dummy_data here, no ?\r\n\r\nSome paths were wrong - the structure is really confusing and the error messages don't really help either - I have to think about how to make this easier to understand!\r\n\r\nHope it was ok that I fiddled with your PR !",
"> Some paths were wrong - the structure is really confusing and the error message don't really help either - I have to think about how to make this easier to understand!\r\n\r\nOh ok! I haven't noticed that sorry :(\r\n\r\n> Hope it was ok that I fiddled with your PR !\r\n\r\nOf course it was ok :)",
"@julien-c Looks like what you have in mind?\r\n\r\n```python\r\nimport nlp\r\nnlp.load_dataset(\"datasets/webis\", \"tl_dr\")\r\n\r\n#Output: Downloading and preparing dataset webis/tl_dr (download: Unknown size, generated: Unknown size, total: Unknown size) to /home/jplu/.cache/huggingface/datasets/webis/tl_dr/1.0.0...\r\n```",
"Merging this for now. Maybe we can see whether to rename it in a different PR @julien-c ? \r\n",
"Hi, \r\nAuthor here of the webis-tldr corpus. Any plans on integrating this dataset into the hub? I remember we could access it in the previous versions of the library. If there is a particular issue that I can help with, do let me know.\r\n\r\nThanks!",
"Hi @shahbazsyed, this dataset _is_ inside the hub but it's namespaced by the organization name `webis`.\r\n\r\nYou can load it following the steps described in https://huggingface.co/datasets/webis/tl_dr\r\n\r\nHere's a Colab showcasing that it works: https://colab.research.google.com/drive/11IrzRVpnMLJZ8_UFFHLR8FhiajjAHRUU?usp=sharing\r\n\r\nThe reason the code is in S3 and not in this repo is that the dataset is namespaced under the `webis` organization. We don't have a lot of namespaced datasets yet but this should become the main way we add more datasets in the future.\r\nLet us know if that's an issue for you. Thank you!"
] | 1,589,437,338,000 | 1,599,127,221,000 | 1,589,489,656,000 | CONTRIBUTOR | null | false | {
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https://api.github.com/repos/huggingface/datasets/issues/97 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/97/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/97/comments | https://api.github.com/repos/huggingface/datasets/issues/97/events | https://github.com/huggingface/datasets/pull/97 | 617,809,431 | MDExOlB1bGxSZXF1ZXN0NDE3NjU4MDcy | 97 | [Csv] add tests for csv dataset script | {
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"@thomwolf - can you check and merge if ok? "
] | 1,589,411,171,000 | 1,589,412,196,000 | 1,589,412,195,000 | MEMBER | null | false | {
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"I might have a different version of `isort` than others. It seems like I'm always reordering the imports of others. But isn't really a problem..."
] | 1,589,402,324,000 | 1,589,465,610,000 | 1,589,465,609,000 | CONTRIBUTOR | null | false | {
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"Great! LGTM :-) ",
"> Ok, really clean!\r\n> I like the logic (not a huge fan of using `_asdict_inner` but it makes sense).\r\n> I think it's a nice improvement!\r\n> \r\n> How should we update the files in the repo? Run a big job on a server or on somebody's computer who has most of the datasets already downloaded?\r\n\r\nMaybe we can split the updates among us...IMO most datasets run very quickly. \r\nI think I've downloaded 50 datasets and 80% are loaded in <5min, 15% in <1h and then `wmt` which is still downloading (since 12h). \r\nI deleted my cache because the `wmt` downloads require quite a lot of space, so I only have parts of the `wmt` datasets on my computer. \r\n\r\n@mariamabarham I guess you have downloaded most of the datasets no? "
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} | ### Better verifications when loading a dataset
I replaced the `urls_checksums` directory that used to contain `checksums.txt` and `cached_sizes.txt`, by a single file `dataset_infos.json`. It's just a dict `config_name` -> `DatasetInfo`.
It simplifies and improves how verifications of checksums and splits sizes are done, as they're all stored in `DatasetInfo` (one per config). Also, having already access to `DatasetInfo` enables to check disk space before running `download_and_prepare` for a given config.
The dataset infos json file is user readable, you can take a look at the squad one that I generated in this PR.
### Renaming
According to these changes, I did some renaming:
`save_checksums` -> `save_infos`
`ignore_checksums` -> `ignore_verifications`
for example, when you are creating a dataset you have to run
```nlp-cli test path/to/my/dataset --save_infos --all_configs```
instead of
```nlp-cli test path/to/my/dataset --save_checksums --all_configs```
### And now, the fun part
We'll have to rerun the `nlp-cli test ... --save_infos --all_configs` for all the datasets
-----------------
feedback appreciated ! | {
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"@jplu - I changed this weird archieve - iter method to something simpler. It's only one file to download anyways so I don't see the point of using weird iter methods...It's a huge file though :D 30 million lines of text. Took me quite some time to download :D "
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- WMT is the first dataset that uses an abstract class IMO, so I had to modify the `load_dataset_module` a bit. | {
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- Also this PR reformats all dataset scripts and adds `datasets` to `make style` | {
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"awesome - so no manual downloaded needed here? ",
"Yes exactly. It works like a standard download"
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```python
nlp.list_datasets()
nlp.list_metrics()
# Copy and prepare the scripts at `local_path` for easy inspection/modification.
nlp.inspect_dataset(path, local_path)
# Copy and prepare the scripts at `local_path` for easy inspection/modification.
nlp.inspect_metric(path, local_path)
```
Also clean up the `HfAPI` to use `dataclasses` for better user-experience | {
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"Looks good to me. I have not really looked too much into the Beam Datasets yet though - so I think you can merge whenever you think is good for Beam datasets :-) "
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I tested it on a small config and it works fine | {
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"Awesome :-) Thanks for adding the function to the Mock DL Manager"
] | 1,589,358,747,000 | 1,589,360,979,000 | 1,589,360,978,000 | MEMBER | null | false | {
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} | I just added the dummy data for this dataset.
This one was uses `tf.io.gfile.copy` to download the data but I added the support for custom download in the mock_download_manager. I also had to add a `tensorflow` dependency for tests. | {
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} | @thomwolf - After looking at `xnli` I think it's better to leave the translation features and add a `translation` key to make them work in our framework.
The result looks like this:
you can see that each split has a `translation` key which value is the nlp.features.Translation object.
That's a simple change. If it's ok for you, I will add dummy data for the other configs and treat the other translation scripts in the same way. | {
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I also removed unused utils functions. | {
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https://api.github.com/repos/huggingface/datasets/issues/80 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/80/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/80/comments | https://api.github.com/repos/huggingface/datasets/issues/80/events | https://github.com/huggingface/datasets/pull/80 | 616,786,803 | MDExOlB1bGxSZXF1ZXN0NDE2ODMwNjk3 | 80 | Add nbytes + nexamples check | {
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"Looks good to me! Should we hard code those numbers in the config classes and make sure that when loading a dataset that the numbers match? "
] | 1,589,300,323,000 | 1,589,356,354,000 | 1,589,356,353,000 | MEMBER | null | false | {
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} | ### Save size and number of examples
Now when you do `save_checksums`, it also create `cached_sizes.txt` right next to the checksum file.
This new file stores the bytes sizes and the number of examples of each split that has been prepared and stored in the cache. Example:
```
# Cached sizes: <full_config_name> <num_bytes> <num_examples>
hansards/house/1.0.0/test 22906629 122290
hansards/house/1.0.0/train 191459584 947969
hansards/senate/1.0.0/test 5711686 25553
hansards/senate/1.0.0/train 40324278 182135
```
### Check processing output
If there is a `caches_sizes.txt`, then each time we run `download_and_prepare` it will make sure that the sizes match. You can set `ignore_checksums=True` if you don't want that to happen.
### Fill Dataset Info
All the split infos and the checksums are now stored correctly in DatasetInfo after `download_and_prepare`
### Check space on disk before running `download_and_prepare`
Check if the space is lower than the sum of the sizes of the files in `checksums.txt` and `cached_files.txt`. This is not ideal though as it considers the files for all configs.
TODO:
A better way to do it would be to have save the `DatasetInfo` instead of the `checksums.txt` and `cached_sizes.txt`, in order to have one file per dataset config (and therefore consider only the sizes of the files for one config and not all of them). It can also be the occasion to factorize all the `download_and_prepare` verifications. Maybe next PR ? | {
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"@lhoestq - I moved the wkipedia file to the \"correct\" folder. ",
"Nice thanks !"
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"It's all about my metric stuff so I'll probably merge it unless you want to have a look.\r\n\r\nTook the occasion to remove the old doc and requirements.txt"
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} | Adding the following metrics as identified by @mariamabarham:
1. BLEU: BiLingual Evaluation Understudy: https://github.com/tensorflow/nmt/blob/master/nmt/scripts/bleu.py, https://github.com/chakki-works/sumeval/blob/master/sumeval/metrics/bleu.py (multilingual)
2. GLEU: Google-BLEU: https://github.com/cnap/gec-ranking/blob/master/scripts/compute_gleu
3. Sacrebleu: https://pypi.org/project/sacrebleu/1.4.8/ (pypi package), https://github.com/mjpost/sacrebleu (github implementation)
4. ROUGE: Recall-Oriented Understudy for Gisting Evaluation: https://github.com/google-research/google-research/tree/master/rouge, https://github.com/chakki-works/sumeval/blob/master/sumeval/metrics/rouge.py (multilingual)
5. Seqeval: https://github.com/chakki-works/seqeval (github implementation), https://pypi.org/project/seqeval/0.0.12/ (pypi package)
6. Coval: coreference evaluation package for the CoNLL and ARRAU datasets https://github.com/ns-moosavi/coval
7. SQuAD v1 evaluation script
8. SQuAD V2 evaluation script: https://worksheets.codalab.org/rest/bundles/0x6b567e1cf2e041ec80d7098f031c5c9e/contents/blob/
9. GLUE
10. XNLI
Not now:
1. Perplexity: https://github.com/allenai/allennlp/blob/master/allennlp/training/metrics/perplexity.py
2. Spearman: https://github.com/allenai/allennlp/blob/master/allennlp/training/metrics/spearman_correlation.py
3. F1_measure: https://github.com/allenai/allennlp/blob/master/allennlp/training/metrics/f1_measure.py
4. Pearson_corelation: https://github.com/allenai/allennlp/blob/master/allennlp/training/metrics/pearson_correlation.py
5. AUC: https://github.com/allenai/allennlp/blob/master/allennlp/training/metrics/auc.py
6. Entropy: https://github.com/allenai/allennlp/blob/master/allennlp/training/metrics/entropy.py | {
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```
pa_array.nbytes > MAX_BATCH_BYTES
```
doesn't work. Indeed for a StructArray, `nbytes` can be less 2GB even if there is an overflow (it loops...).
I don't think we can do a proper overflow test for the limit of 2GB...
For now I replaced it with a sanity check on the first element. | {
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"The tests for the Wikipedia dataset do not pass anymore with the error:\r\n```\r\nTo be able to use this dataset, you need to install the following dependencies ['mwparserfromhell'] using 'pip install mwparserfromhell' for instance'\r\n```",
"This was an issue on master. You can just rebase from master.",
"Perfect! Indeed, it worked^^ Thanks @lhoestq ",
"Currently the dummy_data tests are always green because in a PR the dataset is not yet synchronized with aws. This PR fixes this: https://github.com/huggingface/nlp/pull/140 . \r\n\r\nCould you test `json` locally or wait until the PR: https://github.com/huggingface/nlp/pull/140 is merged ? :-) ",
"Ok, I will wait #140 to be merged and then rebase :) "
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} | In this PR a README.md is added to tests to shine more light on how the dummy data structure works. I try to explain the different possible cases. IMO the best way to understand the logic is to checkout the dummy data structure of the different datasets I mention in the README.md since those are the "edge cases".
@mariamabarham @thomwolf @lhoestq @jplu - I'd be happy to checkout the dummy data structure and get some feedback on possible improvements. | {
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"After a quick chat with Yacine : the 2Go test may not be sufficient actually, as I'm looking at the size of the array and not the size of the current_rows. If the test doesn't do the job I think I'll remove it and lower the batch size a bit to be sure that it never exceeds 2Go. I'll do more tests later"
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According to [this](https://github.com/apache/arrow/blob/master/docs/source/cpp/arrays.rst#size-limitations-and-recommendations), it is not recommended to have pyarrow arrays bigger than 2Go.
Therefore I set a default batch size of 100 000 examples per batch. In general it shouldn't exceed 2Go. If it does, I reduce the batch_size on the fly, and I notify the user with a warning. | {
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"I think rebasing to master will solve the quality test and the datasets that don't have a testing structure yet because of the manual download - maybe you can put them in `datasets under construction`? Then would also make it easier for me to see how to add tests for them :-) "
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"Nice, is that the reason one cannot rerun the tests without deleting the cache? \r\n",
"Yes exactly. It was not using the temporary dir for tests."
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@lhoestq noticed that I accidently deleted it in https://github.com/huggingface/nlp/pull/63#discussion_r422263729. | {
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https://api.github.com/repos/huggingface/datasets/issues/67 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/67/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/67/comments | https://api.github.com/repos/huggingface/datasets/issues/67/events | https://github.com/huggingface/datasets/pull/67 | 614,798,483 | MDExOlB1bGxSZXF1ZXN0NDE1Mjc5NjI0 | 67 | [Tests] Test files locally | {
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"Super nice, good job @patrickvonplaten!"
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} | This PR adds a `aws` and a `local` decorator to the tests so that tests now run on the local datasets.
By default, the `aws` is deactivated and `local` is activated and `slow` is deactivated, so that only 1 test per dataset runs on circle ci.
**When local is activated all folders in `./datasets` are tested.**
**Important** When adding a dataset, we should no longer upload it to AWS. The steps are:
1. Open a PR
2. Add a dataset as described in `datasets/README.md`
3. If all tests pass, push to master
Currently we have 49 functional datasets in our code base.
We have 6 datasets "under-construction" that don't pass the tests - so I put them in a folder "datasets_under_construction" - it would be nice to open a PR to fix them and put them in the `datasets` folder.
**Important** when running tests locally, the datasets are cached so to rerun them delete your local cache via:
`rm -r ~/.cache/huggingface/datasets/*`
@thomwolf @mariamabarham @lhoestq | {
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https://api.github.com/repos/huggingface/datasets/issues/64 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/64/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/64/comments | https://api.github.com/repos/huggingface/datasets/issues/64/events | https://github.com/huggingface/datasets/pull/64 | 614,737,057 | MDExOlB1bGxSZXF1ZXN0NDE1MjMwMjYy | 64 | [Datasets] Make master ready for datasets adding | {
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https://api.github.com/repos/huggingface/datasets/issues/63 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/63/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/63/comments | https://api.github.com/repos/huggingface/datasets/issues/63/events | https://github.com/huggingface/datasets/pull/63 | 614,666,365 | MDExOlB1bGxSZXF1ZXN0NDE1MTczODU5 | 63 | [Dataset scripts] add all datasets scripts | {
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} | As mentioned, we can have the canonical datasets in the master. For now I also want to include all the data as present on S3 to make the synchronization easier when uploading new datastes.
@mariamabarham @lhoestq @thomwolf - what do you think?
If this is ok for you, I can sync up the master with the `add_dataset` branch: https://github.com/huggingface/nlp/pull/37 so that master is up to date. | {
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https://api.github.com/repos/huggingface/datasets/issues/62 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/62/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/62/comments | https://api.github.com/repos/huggingface/datasets/issues/62/events | https://github.com/huggingface/datasets/pull/62 | 614,630,830 | MDExOlB1bGxSZXF1ZXN0NDE1MTQ1NDAx | 62 | [Cached Path] Better error message | {
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} | rename setup_module to prepare_module due to issues with pytests `setup_module` function.
See: PR #59. | {
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https://api.github.com/repos/huggingface/datasets/issues/60 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/60/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/60/comments | https://api.github.com/repos/huggingface/datasets/issues/60/events | https://github.com/huggingface/datasets/pull/60 | 614,372,553 | MDExOlB1bGxSZXF1ZXN0NDE0OTQyNjEy | 60 | Update to simplify some datasets conversion | {
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"Awesome! ",
"Also we should convert `tf.io.gfile.exists` into `os.path.exists` , `tf.io.gfile.listdir`into `os.listdir` and `tf.io.gfile.glob` into `glob.glob` (will need to add `import glob`)",
"> Also we should convert `tf.io.gfile.exists` into `os.path.exists` , `tf.io.gfile.listdir`into `os.listdir` and `tf.io.gfile.glob` into `glob.glob` (will need to add `import glob`)\r\n\r\nWe should probably open a new PR about this",
"I think it might be a good idea to both change the supervised keys to a named tuple and also handle the translation features specifically.",
"Just noticed that `pyarrow` apparently does not have a `is_boolean` function. Or do I have the wrong `pyarrow` version? ",
"Ah, it was a typo `pa.types.is_boolean` is the correct name. Will fix in: https://github.com/huggingface/nlp/pull/59"
] | 1,588,888,944,000 | 1,588,934,312,000 | 1,588,933,104,000 | MEMBER | null | false | {
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} | This PR updates the encoding of `Values` like `integers`, `boolean` and `float` to use python casting and avoid having to cast in the dataset scripts, as mentioned here: https://github.com/huggingface/nlp/pull/37#discussion_r420176626
We could also change (not included in this PR yet):
- `supervized_keys` to make them a NamedTuple instead of a dataclass, and
- handle specifically the `Translation` features.
as mentioned here: https://github.com/huggingface/nlp/pull/37#discussion_r421740236
@patrickvonplaten @mariamabarham tell me if you want these two last changes as well. | {
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https://api.github.com/repos/huggingface/datasets/issues/59 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/59/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/59/comments | https://api.github.com/repos/huggingface/datasets/issues/59/events | https://github.com/huggingface/datasets/pull/59 | 614,366,045 | MDExOlB1bGxSZXF1ZXN0NDE0OTM3NTgx | 59 | Fix tests | {
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"I can fix the tests tomorrow :-) ",
"Very weird bug indeed! I think the problem was that when importing `setup_module` we overwrote `pytest's` setup_module function. I think this is the relevant code in pytest: https://github.com/pytest-dev/pytest/blob/9d2eabb397b059b75b746259daeb20ee5588f559/src/_pytest/python.py#L460.",
"Also PR: #25 introduced some renaming: `DatasetBuilder.builder_config` -> `DatasetBuilder.config` so that we will have to change most of the dataset scripts (Just replace the \"builder_config\" with \"config\").\r\n\r\nI think the renaming is a good idea and I can do the fix with a bash regex, but will have to re-upload most of the datasets. @thomwolf @mariamabarham \r\n\r\n",
"> Also PR: #25 introduced some renaming: `DatasetBuilder.builder_config` -> `DatasetBuilder.config` so that we will have to change most of the dataset scripts (Just replace the \"builder_config\" with \"config\").\r\n> \r\n> I think the renaming is a good idea and I can do the fix with a bash regex, but will have to re-upload most of the datasets. @thomwolf @mariamabarham\r\n\r\nI think if it only needs a re-uploading, we can rename it, `DatasetBuilder.config` is easier and sounds better",
"Ok seems to be fine. Most tests work - merging."
] | 1,588,888,089,000 | 1,588,935,477,000 | 1,588,934,811,000 | MEMBER | null | false | {
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} | @patrickvonplaten I've broken a bit the tests with #25 while simplifying and re-organizing the `load.py` and `download_manager.py` scripts.
I'm trying to fix them here but I have a weird error, do you think you can have a look?
```bash
(datasets) MacBook-Pro-de-Thomas:datasets thomwolf$ python -m pytest -sv ./tests/test_dataset_common.py::DatasetTest::test_builder_class_snli
============================================================================= test session starts =============================================================================
platform darwin -- Python 3.7.7, pytest-5.4.1, py-1.8.1, pluggy-0.13.1 -- /Users/thomwolf/miniconda2/envs/datasets/bin/python
cachedir: .pytest_cache
rootdir: /Users/thomwolf/Documents/GitHub/datasets
plugins: xdist-1.31.0, forked-1.1.3
collected 1 item
tests/test_dataset_common.py::DatasetTest::test_builder_class_snli ERROR
=================================================================================== ERRORS ====================================================================================
____________________________________________________________ ERROR at setup of DatasetTest.test_builder_class_snli ____________________________________________________________
file_path = <module 'tests.test_dataset_common' from '/Users/thomwolf/Documents/GitHub/datasets/tests/test_dataset_common.py'>
download_config = DownloadConfig(cache_dir=None, force_download=False, resume_download=False, local_files_only=False, proxies=None, user_agent=None, extract_compressed_file=True, force_extract=True)
download_kwargs = {}
def setup_module(file_path: str, download_config: Optional[DownloadConfig] = None, **download_kwargs,) -> DatasetBuilder:
r"""
Download/extract/cache a dataset to add to the lib from a path or url which can be:
- a path to a local directory containing the dataset processing python script
- an url to a S3 directory with a dataset processing python script
Dataset codes are cached inside the lib to allow easy import (avoid ugly sys.path tweaks)
and using cloudpickle (among other things).
Return: tuple of
the unique id associated to the dataset
the local path to the dataset
"""
if download_config is None:
download_config = DownloadConfig(**download_kwargs)
download_config.extract_compressed_file = True
download_config.force_extract = True
> name = list(filter(lambda x: x, file_path.split("/")))[-1] + ".py"
E AttributeError: module 'tests.test_dataset_common' has no attribute 'split'
src/nlp/load.py:169: AttributeError
============================================================================== warnings summary ===============================================================================
/Users/thomwolf/miniconda2/envs/datasets/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py:15
/Users/thomwolf/miniconda2/envs/datasets/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py:15: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
-- Docs: https://docs.pytest.org/en/latest/warnings.html
=========================================================================== short test summary info ===========================================================================
ERROR tests/test_dataset_common.py::DatasetTest::test_builder_class_snli - AttributeError: module 'tests.test_dataset_common' has no attribute 'split'
========================================================================= 1 warning, 1 error in 3.63s =========================================================================
```
| {
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https://api.github.com/repos/huggingface/datasets/issues/58 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/58/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/58/comments | https://api.github.com/repos/huggingface/datasets/issues/58/events | https://github.com/huggingface/datasets/pull/58 | 614,362,308 | MDExOlB1bGxSZXF1ZXN0NDE0OTM0NTY4 | 58 | Aborted PR - Fix tests | {
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"Wait I messed up my branch, let me clean this."
] | 1,588,887,619,000 | 1,588,888,081,000 | 1,588,887,687,000 | MEMBER | null | false | {
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} | @patrickvonplaten I've broken a bit the tests with #25 while simplifying and re-organizing the `load.py` and `download_manager.py` scripts.
I'm trying to fix them here but I have a weird error, do you think you can have a look?
```bash
(datasets) MacBook-Pro-de-Thomas:datasets thomwolf$ python -m pytest -sv ./tests/test_dataset_common.py::DatasetTest::test_builder_class_snli
============================================================================= test session starts =============================================================================
platform darwin -- Python 3.7.7, pytest-5.4.1, py-1.8.1, pluggy-0.13.1 -- /Users/thomwolf/miniconda2/envs/datasets/bin/python
cachedir: .pytest_cache
rootdir: /Users/thomwolf/Documents/GitHub/datasets
plugins: xdist-1.31.0, forked-1.1.3
collected 1 item
tests/test_dataset_common.py::DatasetTest::test_builder_class_snli ERROR
=================================================================================== ERRORS ====================================================================================
____________________________________________________________ ERROR at setup of DatasetTest.test_builder_class_snli ____________________________________________________________
file_path = <module 'tests.test_dataset_common' from '/Users/thomwolf/Documents/GitHub/datasets/tests/test_dataset_common.py'>
download_config = DownloadConfig(cache_dir=None, force_download=False, resume_download=False, local_files_only=False, proxies=None, user_agent=None, extract_compressed_file=True, force_extract=True)
download_kwargs = {}
def setup_module(file_path: str, download_config: Optional[DownloadConfig] = None, **download_kwargs,) -> DatasetBuilder:
r"""
Download/extract/cache a dataset to add to the lib from a path or url which can be:
- a path to a local directory containing the dataset processing python script
- an url to a S3 directory with a dataset processing python script
Dataset codes are cached inside the lib to allow easy import (avoid ugly sys.path tweaks)
and using cloudpickle (among other things).
Return: tuple of
the unique id associated to the dataset
the local path to the dataset
"""
if download_config is None:
download_config = DownloadConfig(**download_kwargs)
download_config.extract_compressed_file = True
download_config.force_extract = True
> name = list(filter(lambda x: x, file_path.split("/")))[-1] + ".py"
E AttributeError: module 'tests.test_dataset_common' has no attribute 'split'
src/nlp/load.py:169: AttributeError
============================================================================== warnings summary ===============================================================================
/Users/thomwolf/miniconda2/envs/datasets/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py:15
/Users/thomwolf/miniconda2/envs/datasets/lib/python3.7/site-packages/tensorflow_core/python/pywrap_tensorflow_internal.py:15: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
-- Docs: https://docs.pytest.org/en/latest/warnings.html
=========================================================================== short test summary info ===========================================================================
ERROR tests/test_dataset_common.py::DatasetTest::test_builder_class_snli - AttributeError: module 'tests.test_dataset_common' has no attribute 'split'
========================================================================= 1 warning, 1 error in 3.63s =========================================================================
```
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https://api.github.com/repos/huggingface/datasets/issues/57 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/57/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/57/comments | https://api.github.com/repos/huggingface/datasets/issues/57/events | https://github.com/huggingface/datasets/pull/57 | 614,261,638 | MDExOlB1bGxSZXF1ZXN0NDE0ODUzMDM5 | 57 | Better cached path | {
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"I should have read this PR before doing my own: https://github.com/huggingface/nlp/pull/62 :D \r\nwill close mine. Looks great :-) ",
"> Awesome, this is really nice!\r\n> \r\n> By the way, we should improve the `cached_path` method of the `transformers` repo similarly, don't you think (@patrickvonplaten in particular).\r\n\r\nYeah, we should do the same in `transformers` I think - will note it down."
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} | ### Changes:
- The `cached_path` no longer returns None if the file is missing/the url doesn't work. Instead, it can raise `FileNotFoundError` (missing file), `ConnectionError` (no cache and unreachable url) or `ValueError` (parsing error)
- Fix requests to firebase API that doesn't handle HEAD requests...
- Allow custom download in datasets script: it allows to use `tf.io.gfile.copy` for example, to download from google storage. I added an example: the `boolq` script | {
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https://api.github.com/repos/huggingface/datasets/issues/55 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/55/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/55/comments | https://api.github.com/repos/huggingface/datasets/issues/55/events | https://github.com/huggingface/datasets/pull/55 | 613,968,072 | MDExOlB1bGxSZXF1ZXN0NDE0NjE0MjE1 | 55 | Beam datasets | {
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"Right now the changes are a bit hard to read as the one from #25 are also included. You can wait until #25 is merged before looking at the implementation details",
"Nice!! I tested it a bit and works quite well. I will do a my review once the #25 will be merged because there are several overlaps.\r\n\r\nAt least I can share my thoughts on your **Next** section:\r\n1) I don't think it is a good thing to rely on tfds preprocessed datasets uploaded in their online storage, because they might be updated or deleted at any moment by Google and then possibly break our own processing.\r\n2) Improves the pipeline is always a good direction, but in the meantime we might also share the preprocessed dataset in S3 storage. Which might be another way to see 1), instead of downloading Google preprocessed datasets, using our own ones.\r\n3) Apache Beam can be easily integrated in Spark, so I don't see the need to replace Beam by Spark.",
"Ok I've merged #25 so you can rebase or merge if you want.\r\n\r\nI fully agree with @jplu notes for the \"next section\".\r\n\r\nDon't hesitate to use some credit on Google Dataflow if you think it would be useful to give it a try.",
"Pr is ready for review !\r\n\r\nNew minor changes:\r\n- re-added the csv dataset builder (it was on my branch from #25 but disappeared from master)\r\n- move the csv script and the wikipedia script to \"under construction\" for now\r\n- some renaming in the `nlp-cli test` command"
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} | # Beam datasets
## Intro
Beam Datasets are using beam pipelines for preprocessing (basically lots of `.map` over objects called PCollections).
The advantage of apache beam is that you can choose which type of runner you want to use to preprocess your data. The main runners are:
- the `DirectRunner` to run the pipeline locally (default). However I encountered memory issues for big datasets (like the french or english wikipedia). Small dataset work fine
- Google Dataflow. I didn't play with it.
- Spark or Flink, two well known data processing frameworks. I tried to use the Spark/Flink local runners provided by apache beam for python and wasn't able to make them work properly though...
## From tfds beam datasets to our own beam datasets
Tensorflow datasets used beam and a complicated pipeline to shard the TFRecords files.
To allow users to download beam datasets and not having to preprocess them, they also allow to download the already preprocessed datasets from their google storage (the beam pipeline doesn't run in that case).
On our side, we replace TFRecords by something else. Arrow or Parquet do the job but I chose Parquet as: 1) there is a builtin apache beam parquet writer that is quite convenient, and 2) reading parquet from the pyarrow library is also simple and effective (there is a mmap option !)
Moreover we don't shard datasets in many many files like tfds (they were doing probably doing that mainly because of the limit of 2Gb per TFRecord file). Therefore we have a simpler pipeline that saves each split into one parquet file. We also removed the utilities to use their google storage (for now maybe ? we'll have to discuss it).
## Main changes
- Added a BeamWriter to save the output of beam pipelines into parquet files and fill dataset infos
- Create a ParquetReader and refactor a bit the arrow_reader.py
\> **With this, we can now try to add beam datasets from tfds**
I already added the wikipedia one, and I will also try to add the Wiki40b dataset
## Test the wikipedia script
You can download and run the beam pipeline for wikipedia (using the `DirectRunner` by default) like this:
```
>>> import nlp
>>> nlp.load("datasets/nlp/wikipedia", dataset_config="20200501.frr")
```
This wikipedia dataset (lang: frr, North Frisian) is a small one (~10Mb), but feel free to try bigger ones (and fill 20Gb of swap memory if you try the english one lol)
## Next
Should we allow to download preprocessed datasets from the tfds google storage ?
Should we try to optimize the beam pipelines to run locally without memory issues ?
Should we try other data processing frameworks for big datasets, like spark ?
## About this PR
It should be merged after #25
-----------------
I'd be happy to have your feedback and your ideas to improve the processing of big datasets like wikipedia :) | {
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https://api.github.com/repos/huggingface/datasets/issues/53 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/53/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/53/comments | https://api.github.com/repos/huggingface/datasets/issues/53/events | https://github.com/huggingface/datasets/pull/53 | 613,436,158 | MDExOlB1bGxSZXF1ZXN0NDE0MTkwMzkz | 53 | [Features] Typo in generate_from_dict | {
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https://api.github.com/repos/huggingface/datasets/issues/52 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/52/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/52/comments | https://api.github.com/repos/huggingface/datasets/issues/52/events | https://github.com/huggingface/datasets/pull/52 | 613,339,071 | MDExOlB1bGxSZXF1ZXN0NDE0MTEyMDAy | 52 | allow dummy folder structure to handle dict of lists | {
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"Awesome!\r\nLet's have this in the doc at the end :-)"
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} | This PR refactors the test design a bit and puts the mock download manager in the `utils` files as it is just a test helper class.
as @mariamabarham pointed out, creating a dummy folder structure can be quite hard to grasp.
This PR tries to change that to some extent.
It follows the following logic for the `dummy` folder structure now:
1.) The data bulider has no config -> the `dummy` folder structure is:
`dummy/<version>/dummy_data.zip`
2) The data builder has >= 1 configs -> the `dummy` folder structure is:
`dummy/<config_name_1>/<version>/dummy_data.zip`
`dummy/<config_name_2>/<version>/dummy_data.zip`
Now, the difficult part is how to create the `dummy_data.zip` file. There are two cases:
A) The `data_urs` parameter inserted into the `download_and_extract` fn is a **string**:
-> the `dummy_data.zip` file zips the folder:
`dummy_data/<relative_path_of_folder_structure_of_url>`
B) The `data_urs` parameter inserted into the `download_and_extract` fn is a **dict**:
-> the `dummy_data.zip` file zips the folder:
`dummy_data/<relative_path_of_folder_structure_of_url_behind _key_1>`
`dummy_data/<relative_path_of_folder_structure_of_url_behind _key_2>`
By relative folder structure I mean `url_path.split('./')[-1]`. As an example the dataset **xquad** by deepmind has the following url path behind the key `de`: `https://github.com/deepmind/xquad/blob/master/xquad.de.json`
-> This means that the relative url path should be `xquad.de.json`.
@mariamabarham B) is a change from how is was before and I think is makes more sense.
While before the `dummy_data.zip` file for xquad with config `de` looked like:
`dummy_data/de` it would now look like `dummy_data/xquad.de.json`. I think this is better and easier to understand.
Therefore there are currently 6 tests that would have to have changed their dummy folder structure, but which can easily be done (30min).
I also added a function: `print_dummy_data_folder_structure` that prints out the expected structures when testing which should be quite helpful. | {
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"Test failure is not related to change in test file.\r\n"
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@mariamabarham @thomwolf | {
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This is a follow-up PR of: https://github.com/huggingface/nlp/pull/41 | {
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"Whoops I fixed it directly on master before checking that you have done it in this PR. We may close it",
"Yeah, I saw :-) But I think we should add this as well since some datasets have an empty list of configs and then as the code is now it would fail. \r\n\r\nIn this PR, I just make sure that the code jumps in the correct else if \"there are no configs\" as is the case for some datasets @mariamabarham ",
"Sorry, I thought you meant a different commit . Just saw this one: https://github.com/huggingface/nlp/commit/7c644f284e2303b57612a6e7c904fe13906d893f\r\n.\r\n\r\nAll good then :-) "
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https://api.github.com/repos/huggingface/datasets/issues/42 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/42/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/42/comments | https://api.github.com/repos/huggingface/datasets/issues/42/events | https://github.com/huggingface/datasets/pull/42 | 611,754,343 | MDExOlB1bGxSZXF1ZXN0NDEyODU1OTE2 | 42 | [Tests] allow tests for builders without config | {
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} | Some dataset scripts have no configs - the tests have to be adapted for this case.
In this case the dummy data will be saved as:
- natural_questions
-> dummy
-> -> 1.0.0 (version num)
-> -> -> dummy_data.zip
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https://api.github.com/repos/huggingface/datasets/issues/41 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/41/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/41/comments | https://api.github.com/repos/huggingface/datasets/issues/41/events | https://github.com/huggingface/datasets/pull/41 | 611,739,219 | MDExOlB1bGxSZXF1ZXN0NDEyODQzNDQy | 41 | [Load module] allow kwargs into load module | {
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This simple change allows to pass ``force_reload=True`` as ``builder_kwargs`` in the ``load.py`` function. | {
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https://api.github.com/repos/huggingface/datasets/issues/40 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/40/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/40/comments | https://api.github.com/repos/huggingface/datasets/issues/40/events | https://github.com/huggingface/datasets/pull/40 | 611,721,308 | MDExOlB1bGxSZXF1ZXN0NDEyODI4NzU2 | 40 | Update remote checksums instead of overwrite | {
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} | When the user uploads a dataset on S3, checksums are also uploaded with the `--upload_checksums` parameter.
If the user uploads the dataset in several steps, then the remote checksums file was previously overwritten. Now it's going to be updated with the new checksums. | {
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https://api.github.com/repos/huggingface/datasets/issues/39 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/39/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/39/comments | https://api.github.com/repos/huggingface/datasets/issues/39/events | https://github.com/huggingface/datasets/pull/39 | 611,712,135 | MDExOlB1bGxSZXF1ZXN0NDEyODIxNTA4 | 39 | [Test] improve slow testing | {
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|
https://api.github.com/repos/huggingface/datasets/issues/38 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/38/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/38/comments | https://api.github.com/repos/huggingface/datasets/issues/38/events | https://github.com/huggingface/datasets/issues/38 | 611,677,656 | MDU6SXNzdWU2MTE2Nzc2NTY= | 38 | [Checksums] Error for some datasets | {
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] | null | [
"@lhoestq - could you take a look? It's not very urgent though!",
"Fixed with 06882b4\r\n\r\nNow your command works :)\r\nNote that you can also do\r\n```\r\nnlp-cli test datasets/nlp/xnli --save_checksums\r\n```\r\nSo that it will save the checksums directly in the right directory.",
"Awesome!"
] | 1,588,579,216,000 | 1,588,585,700,000 | 1,588,585,700,000 | MEMBER | null | null | {
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} | The checksums command works very nicely for `squad`. But for `crime_and_punish` and `xnli`,
the same bug happens:
When running:
```
python nlp-cli nlp-cli test xnli --save_checksums
```
leads to:
```
File "nlp-cli", line 33, in <module>
service.run()
File "/home/patrick/python_bin/nlp/commands/test.py", line 61, in run
ignore_checksums=self._ignore_checksums,
File "/home/patrick/python_bin/nlp/builder.py", line 383, in download_and_prepare
self._download_and_prepare(dl_manager=dl_manager, download_config=download_config)
File "/home/patrick/python_bin/nlp/builder.py", line 627, in _download_and_prepare
dl_manager=dl_manager, max_examples_per_split=download_config.max_examples_per_split,
File "/home/patrick/python_bin/nlp/builder.py", line 431, in _download_and_prepare
split_generators = self._split_generators(dl_manager, **split_generators_kwargs)
File "/home/patrick/python_bin/nlp/datasets/xnli/8bf4185a2da1ef2a523186dd660d9adcf0946189e7fa5942ea31c63c07b68a7f/xnli.py", line 95, in _split_generators
dl_dir = dl_manager.download_and_extract(_DATA_URL)
File "/home/patrick/python_bin/nlp/utils/download_manager.py", line 246, in download_and_extract
return self.extract(self.download(url_or_urls))
File "/home/patrick/python_bin/nlp/utils/download_manager.py", line 186, in download
self._record_sizes_checksums(url_or_urls, downloaded_path_or_paths)
File "/home/patrick/python_bin/nlp/utils/download_manager.py", line 166, in _record_sizes_checksums
self._recorded_sizes_checksums[url] = get_size_checksum(path)
File "/home/patrick/python_bin/nlp/utils/checksums_utils.py", line 81, in get_size_checksum
with open(path, "rb") as f:
TypeError: expected str, bytes or os.PathLike object, not tuple
```
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https://api.github.com/repos/huggingface/datasets/issues/37 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/37/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/37/comments | https://api.github.com/repos/huggingface/datasets/issues/37/events | https://github.com/huggingface/datasets/pull/37 | 611,670,295 | MDExOlB1bGxSZXF1ZXN0NDEyNzg5MjQ4 | 37 | [Datasets ToDo-List] add datasets | {
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"Note:\r\n```\r\nnlp-cli test datasets/nlp/<your-dataset-folder> --save_checksums --all_configs\r\n```\r\ndirectly saves the checksums in the right place, and runs for all the dataset configurations.",
"@patrickvonplaten can you provide the add the link to the PR for the dummy data? ",
"https://github.com/huggingface/nlp/pull/15 - But it's probably best to checkout into this branch and look how the dummy data strtucture is for `squad` for example.",
"are lock files supposed to stay ?",
"> are lock files supposed to stay ?\r\n\r\nNot sure! I think the checksum command creates them, so I just uploaded them as well.",
"We can trash the `lock` file, they are dummy file that are only used to avoid concurrent access when the library is run.\r\nYou can read the filelock readme and code, it's a very simple single-file library: https://github.com/benediktschmitt/py-filelock",
"The testing design was slightly changed as explained in https://github.com/huggingface/nlp/pull/51 . \r\nIf creating the dummy folder is too confusing it helps to upload everything else to AWS, then run the test and check the INFO when testing on how to create the dummy folder structure.",
"Closing because we can now work on master"
] | 1,588,578,459,000 | 1,588,945,703,000 | 1,588,945,703,000 | MEMBER | null | true | {
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} | ## Description
This PR acts as a dashboard to see which datasets are added to the library and work.
Cicle-ci should always be green so that we can be sure that newly added datasets are functional.
This PR should not be merged.
## Progress
**For the following datasets the test commands**:
```
RUN_SLOW=1 pytest tests/test_dataset_common.py::DatasetTest::test_load_real_dataset_<your-dataset-name>
```
and
```
RUN_SLOW=1 pytest tests/test_dataset_common.py::DatasetTest::test_load_dataset_all_configs_<your-dataset-name>
```
**passes**.
- [x] Squad
- [x] Sentiment140
- [x] XNLI
- [x] Crime_and_Punish
- [x] movie_rationales
- [x] ai2_arc
- [x] anli
- [x] event2Mind
- [x] Fquad
- [x] blimp
- [x] empathetic_dialogues
- [x] cosmos_qa
- [x] xquad
- [x] blog_authorship_corpus
- [x] SNLI
- [x] break_data
- [x] SQuAD v2
- [x] cfq
- [x] eraser_multi_rc
- [x] Glue
- [x] Tydiqa
- [x] wiki_qa
- [x] wikitext
- [x] winogrande
- [x] wiqa
- [x] esnli
- [x] civil_comments
- [x] commonsense_qa
- [x] com_qa
- [x] coqa
- [x] wiki_split
- [x] cos_e
- [x] xcopa
- [x] quarel
- [x] quartz
- [x] squad_it
- [x] quoref
- [x] squad_pt
- [x] cornell_movie_dialog
- [x] SciQ
- [x] Scifact
- [x] hellaswag
- [x] ted_multi (in translate)
- [x] Aeslc (summarization)
- [x] drop
- [x] gap
- [x] hansard
- [x] opinosis
- [x] MLQA
- [x] math_dataset
## How-To-Add a dataset
**Before adding a dataset make sure that your branch is up to date**:
1. `git checkout add_datasets`
2. `git pull`
**Add a dataset via the `convert_dataset.sh` bash script:**
Running `bash convert_dataset.sh <file/to/tfds/datascript.py>` (*e.g.* `bash convert_dataset.sh ../tensorflow-datasets/tensorflow_datasets/text/movie_rationales.py`) will automatically run all the steps mentioned in **Add a dataset manually** below.
Make sure that you run `convert_dataset.sh` from the root folder of `nlp`.
The conversion script should work almost always for step 1): "convert dataset script from tfds to nlp format" and 2) "create checksum file" and step 3) "make style".
It can also sometimes automatically run step 4) "create the correct dummy data from tfds", but this will only work if a) there is either no config name or only one config name and b) the `tfds testing/test_data/fake_example` is in the correct form.
Nevertheless, the script should always be run in the beginning until an error occurs to be more efficient.
If the conversion script does not work or fails at some step, then you can run the steps manually as follows:
**Add a dataset manually**
Make sure you run all of the following commands from the root of your `nlp` git clone.
Also make sure that you changed to this branch:
```
git checkout add_datasets
```
1) the tfds datascript file should be converted to `nlp` style:
```
python nlp-cli convert --tfds_path <path/to/tensorflow_datasets/text/your_dataset_name>.py --nlp_directory datasets/nlp
```
This will convert the tdfs script and create a folder with the correct name.
2) the checksum file should be added. Use the command:
```
python nlp-cli test datasets/nlp/<your-dataset-folder> --save_checksums --all_configs
```
A checksums.txt file should be created in your folder and the structure should look as follows:
squad/
├── squad.py/
└── urls_checksums/
...........└── checksums.txt
Delete the created `*.lock` file afterward - it should not be uploaded to AWS.
3) run black and isort on your newly added datascript files so that they look nice:
```
make style
```
4) the dummy data should be added. For this it might be useful to take a look into the structure of other examples as shown in the PR here and at `<path/to/tensorflow_datasets/testing/test_data/test_data/fake_examples>` whether the same data can be used.
5) the data can be uploaded to AWS using the command
```
aws s3 cp datasets/nlp/<your-dataset-folder> s3://datasets.huggingface.co/nlp/<your-dataset-folder> --recursive
```
6) check whether all works as expected using:
```
RUN_SLOW=1 pytest tests/test_dataset_common.py::DatasetTest::test_load_real_dataset_<your-dataset-name>
```
and
```
RUN_SLOW=1 pytest tests/test_dataset_common.py::DatasetTest::test_load_dataset_all_configs_<your-dataset-name>
```
7) push to this PR and rerun the circle ci workflow to check whether circle ci stays green.
8) Edit this commend and tick off your newly added dataset :-)
## TODO-list
Maybe we can add a TODO-list here for everybody that feels like adding new datasets so that we will not add the same datasets.
Here a link to available datasets: https://docs.google.com/spreadsheets/d/1zOtEqOrnVQwdgkC4nJrTY6d-Av02u0XFzeKAtBM2fUI/edit#gid=0
Patrick:
- [ ] boolq - *weird download link*
- [ ] c4 - *beam dataset* | {
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https://api.github.com/repos/huggingface/datasets/issues/36 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/36/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/36/comments | https://api.github.com/repos/huggingface/datasets/issues/36/events | https://github.com/huggingface/datasets/pull/36 | 611,528,349 | MDExOlB1bGxSZXF1ZXN0NDEyNjgwOTk1 | 36 | Metrics - refactoring, adding support for download and distributed metrics | {
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"Ok, this one seems to be ready to merge.",
"> Really cool, I love it! I would just raise a tiny point, the distributive version of the metrics might not work properly with TF because it is a different way to do, why not to add a \"framework\" detection and raise warning when TF is used, saying something like \"not available yet in TF switch to non distributive metric computation\".\r\n> \r\n> What do you think?\r\n\r\nGood point @jplu I'm not sure how you should do distributed metrics evaluation for TF.\r\nThere is only one python script, right?\r\nMaybe it's just the same as in the not-distributed case?",
"I think non-distributed case should work in TF for both cases indeed, but this needs to be tested."
] | 1,588,546,817,000 | 1,589,184,962,000 | 1,589,184,960,000 | MEMBER | null | false | {
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} | Refactoring metrics to have a similar loading API than the datasets and improving the import system.
# Import system
The import system has ben upgraded. There are now three types of imports allowed:
1. `library` imports (identified as "absolute imports")
```python
import seqeval
```
=> we'll test all the imports before running the scripts and if one cannot be imported we'll display an error message like this one:
`ImportError: To be able to use this metric/dataset, you need to install the following dependencies ['seqeval'] using 'pip install seqeval' for instance'`
2. `internal` imports (identified as "relative imports")
```python
import .c4_utils
```
=> we'll assume this point to a file in the same directory/S3-directory as the main script and download this file.
2. `external` imports (identified as "relative imports" with a comment starting with `# From:`)
```python
from .nmt_bleu import compute_bleu # From: https://github.com/tensorflow/nmt/blob/master/nmt/scripts/bleu.py
```
=> we'll assume this point to the URL of a python script (if it's a link to a github file, we'll take the raw file automatically).
=> the script is downloaded and renamed to the import name (here above renamed from `bleu.py` to `nmt_bleu.py`). Renaming the file can be necessary if the distant file has the same name as the dataset/metric processing script. If you forgot to rename the distant script and it has the same name as the dataset/metric, you'll have an explicit error message asking to rename the import anyway.
# Hosting metrics
Metrics are hosted on a S3 bucket like the dataset processing scripts.
# Metrics scripts
Metrics scripts have a lot in common with datasets processing scripts. They also have a `metric.info` including citations, descriptions and links to relevant pages.
Metrics have more documentation to supply to ensure they are used well.
Four examples are already included for reference in [./metrics](./metrics): BLEU, ROUGE, SacreBLEU and SeqEVAL.
# Automatic support for distributed/multi-processing metric computation
We've also added support for automatic distributed/multi-processing metric computation (e.g. when using DistributedDataParallel). We leverage our own dataset format for smart caching in this case.
Here is a quick gist of a standard use of metrics (the simplest usage):
```python
import nlp
bleu_metric = nlp.load_metric('bleu')
# If you only have a single iteration, you can easily compute the score like this
predictions = model(inputs)
score = bleu_metric.compute(predictions, references)
# If you have a loop, you can "add" your predictions and references at each iteration instead of having to save them yourself (the metric object store them efficiently for you)
for batch in dataloader:
model_input, targets = batch
predictions = model(model_inputs)
bleu.add(predictions, targets)
score = bleu_metric.compute() # Compute the score from all the stored predictions/references
```
Here is a quick gist of a use in a distributed torch setup (should work for any python multi-process setup actually). It's pretty much identical to the second example above:
```python
import nlp
# You need to give the total number of parallel python processes (num_process) and the id of each process (process_id)
bleu = nlp.load_metric('bleu', process_id=torch.distributed.get_rank(),b num_process=torch.distributed.get_world_size())
for batch in dataloader:
model_input, targets = batch
predictions = model(model_inputs)
bleu.add(predictions, targets)
score = bleu_metric.compute() # Compute the score on the first node by default (can be set to compute on each node as well)
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/35 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/35/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/35/comments | https://api.github.com/repos/huggingface/datasets/issues/35/events | https://github.com/huggingface/datasets/pull/35 | 611,413,731 | MDExOlB1bGxSZXF1ZXN0NDEyNjAyMTc0 | 35 | [Tests] fix typo | {
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} | @lhoestq - currently the slow test fail with:
```
_____________________________________________________________________________________ DatasetTest.test_load_real_dataset_xnli _____________________________________________________________________________________
self = <tests.test_dataset_common.DatasetTest testMethod=test_load_real_dataset_xnli>, dataset_name = 'xnli'
@slow
def test_load_real_dataset(self, dataset_name):
with tempfile.TemporaryDirectory() as temp_data_dir:
> dataset = load(dataset_name, data_dir=temp_data_dir)
tests/test_dataset_common.py:153:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../python_bin/nlp/load.py:497: in load
dbuilder.download_and_prepare(**download_and_prepare_kwargs)
../../python_bin/nlp/builder.py:383: in download_and_prepare
self._download_and_prepare(dl_manager=dl_manager, download_config=download_config)
../../python_bin/nlp/builder.py:627: in _download_and_prepare
dl_manager=dl_manager, max_examples_per_split=download_config.max_examples_per_split,
../../python_bin/nlp/builder.py:431: in _download_and_prepare
split_generators = self._split_generators(dl_manager, **split_generators_kwargs)
../../python_bin/nlp/datasets/xnli/8bf4185a2da1ef2a523186dd660d9adcf0946189e7fa5942ea31c63c07b68a7f/xnli.py:95: in _split_generators
dl_dir = dl_manager.download_and_extract(_DATA_URL)
../../python_bin/nlp/utils/download_manager.py:246: in download_and_extract
return self.extract(self.download(url_or_urls))
../../python_bin/nlp/utils/download_manager.py:186: in download
self._record_sizes_checksums(url_or_urls, downloaded_path_or_paths)
../../python_bin/nlp/utils/download_manager.py:166: in _record_sizes_checksums
self._recorded_sizes_checksums[url] = get_size_checksum(path)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
path = ('', '/tmp/tmpkajlg9yc/downloads/c0f7773c480a3f2d85639d777e0e17e65527460310d80760fd3fc2b2f2960556.c952a63cb17d3d46e412ceb7dbcd656ce2b15cc9ef17f50c28f81c48a7c853b5')
def get_size_checksum(path: str) -> Tuple[int, str]:
"""Compute the file size and the sha256 checksum of a file"""
m = sha256()
> with open(path, "rb") as f:
E TypeError: expected str, bytes or os.PathLike object, not tuple
../../python_bin/nlp/utils/checksums_utils.py:81: TypeError
```
- the checksums probably need to be updated no? And we should also think about how to write a test for the checksums. | {
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https://api.github.com/repos/huggingface/datasets/issues/34 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/34/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/34/comments | https://api.github.com/repos/huggingface/datasets/issues/34/events | https://github.com/huggingface/datasets/pull/34 | 611,385,516 | MDExOlB1bGxSZXF1ZXN0NDEyNTg0OTM0 | 34 | [Tests] add slow tests | {
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"url": "https://api.github.com/repos/huggingface/datasets/pulls/34",
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Before uploading a dataset, one should test that this test passes, manually by running
```
RUN_SLOW=1 pytest tests/test_dataset_common.py::DatasetTest::test_load_real_dataset_<your-dataset-script-name>
```
This PR should be merged after PR: #33 | {
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https://api.github.com/repos/huggingface/datasets/issues/33 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/33/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/33/comments | https://api.github.com/repos/huggingface/datasets/issues/33/events | https://github.com/huggingface/datasets/pull/33 | 611,052,081 | MDExOlB1bGxSZXF1ZXN0NDEyMzU1ODE0 | 33 | Big cleanup/refactoring for clean serialization | {
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"Great! I think when this merged, we can merge sure that Circle Ci stays happy when uploading new datasets. "
] | 1,588,376,757,000 | 1,588,508,254,000 | 1,588,508,253,000 | MEMBER | null | false | {
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} | This PR cleans many base classes to re-build them as `dataclasses`. We can thus use a simple serialization workflow for `DatasetInfo`, including it's `Features` and `SplitDict` based on `dataclasses` `asdict()`.
The resulting code is a lot shorter, can be easily serialized/deserialized, dataset info are human-readable and we can get rid of the `dataclass_json` dependency.
The scripts have breaking changes and the conversion tool is updated.
Example of dataset info in SQuAD script now:
```python
def _info(self):
return nlp.DatasetInfo(
description=_DESCRIPTION,
features=nlp.Features({
"id":
nlp.Value('string'),
"title":
nlp.Value('string'),
"context":
nlp.Value('string'),
"question":
nlp.Value('string'),
"answers":
nlp.Sequence({
"text": nlp.Value('string'),
"answer_start": nlp.Value('int32'),
}),
}),
# No default supervised_keys (as we have to pass both question
# and context as input).
supervised_keys=None,
homepage="https://rajpurkar.github.io/SQuAD-explorer/",
citation=_CITATION,
)
```
Example of serialized dataset info:
```bash
{
"description": "Stanford Question Answering Dataset (SQuAD) is a reading comprehension dataset, consisting of questions posed by crowdworkers on a set of Wikipedia articles, where the answer to every question is a segment of text, or span, from the corresponding reading passage, or the question might be unanswerable.\n",
"citation": "@article{2016arXiv160605250R,\n author = {{Rajpurkar}, Pranav and {Zhang}, Jian and {Lopyrev},\n Konstantin and {Liang}, Percy},\n title = \"{SQuAD: 100,000+ Questions for Machine Comprehension of Text}\",\n journal = {arXiv e-prints},\n year = 2016,\n eid = {arXiv:1606.05250},\n pages = {arXiv:1606.05250},\narchivePrefix = {arXiv},\n eprint = {1606.05250},\n}\n",
"homepage": "https://rajpurkar.github.io/SQuAD-explorer/",
"license": "",
"features": {
"id": {
"dtype": "string",
"_type": "Value"
},
"title": {
"dtype": "string",
"_type": "Value"
},
"context": {
"dtype": "string",
"_type": "Value"
},
"question": {
"dtype": "string",
"_type": "Value"
},
"answers": {
"feature": {
"text": {
"dtype": "string",
"_type": "Value"
},
"answer_start": {
"dtype": "int32",
"_type": "Value"
}
},
"length": -1,
"_type": "Sequence"
}
},
"supervised_keys": null,
"name": "squad",
"version": {
"version_str": "1.0.0",
"description": "New split API (https://tensorflow.org/datasets/splits)",
"nlp_version_to_prepare": null,
"major": 1,
"minor": 0,
"patch": 0
},
"splits": {
"train": {
"name": "train",
"num_bytes": 79426386,
"num_examples": 87599,
"dataset_name": "squad"
},
"validation": {
"name": "validation",
"num_bytes": 10491883,
"num_examples": 10570,
"dataset_name": "squad"
}
},
"size_in_bytes": 0,
"download_size": 35142551,
"download_checksums": []
}
``` | {
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https://api.github.com/repos/huggingface/datasets/issues/32 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/32/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/32/comments | https://api.github.com/repos/huggingface/datasets/issues/32/events | https://github.com/huggingface/datasets/pull/32 | 610,715,580 | MDExOlB1bGxSZXF1ZXN0NDEyMTAzMzIx | 32 | Fix map caching notebooks | {
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} | Previously, caching results with `.map()` didn't work in notebooks.
To reuse a result, `.map()` serializes the functions with `dill.dumps` and then it hashes it.
The problem is that when using `dill.dumps` to serialize a function, it also saves its origin (filename + line no.) and the origin of all the `globals` this function needs. However for notebooks and shells, the filename looks like \<ipython-input-13-9ed2afe61d25\> and the line no. changes often.
To fix the problem, I added a new dispatch function for code objects that ignore the origin of the code if it comes from a notebook or a python shell.
I tested these cases in a notebook:
- lambda functions
- named functions
- methods
- classmethods
- staticmethods
- classes that implement `__call__`
The caching now works as expected for all of them :)
I also tested the caching in the demo notebook and it works fine ! | {
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https://api.github.com/repos/huggingface/datasets/issues/31 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/31/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/31/comments | https://api.github.com/repos/huggingface/datasets/issues/31/events | https://github.com/huggingface/datasets/pull/31 | 610,677,641 | MDExOlB1bGxSZXF1ZXN0NDEyMDczNDE4 | 31 | [Circle ci] Install a virtual env before running tests | {
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} | Install a virtual env before running tests to not running into sudo issues when dynamically downloading files.
Same number of tests now pass / fail as on my local computer:
| {
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https://api.github.com/repos/huggingface/datasets/issues/30 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/30/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/30/comments | https://api.github.com/repos/huggingface/datasets/issues/30/events | https://github.com/huggingface/datasets/pull/30 | 610,549,072 | MDExOlB1bGxSZXF1ZXN0NDExOTY4Mzk3 | 30 | add metrics which require download files from github | {
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} | To download files from github, I copied the `load_dataset_module` and its dependencies (without the builder) in `load.py` to `metrics/metric_utils.py`. I made the following changes:
- copy the needed files in a folder`metric_name`
- delete all other files that are not needed
For metrics that require an external import, I first create a `<metric_name>_imports.py` file which contains all external urls. Then I create a `<metric_name>.py` in which I will load the external files using `<metric_name>_imports.py` | {
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https://api.github.com/repos/huggingface/datasets/issues/29 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/29/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/29/comments | https://api.github.com/repos/huggingface/datasets/issues/29/events | https://github.com/huggingface/datasets/pull/29 | 610,243,997 | MDExOlB1bGxSZXF1ZXN0NDExNzIwODMx | 29 | Hf_api small changes | {
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"Ok merging! I think it's good now"
] | 1,588,266,403,000 | 1,588,276,305,000 | 1,588,276,304,000 | MEMBER | null | false | {
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} | From Patrick:
```python
from nlp import hf_api
api = hf_api.HfApi()
api.dataset_list()
```
works :-) | {
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https://api.github.com/repos/huggingface/datasets/issues/28 | https://api.github.com/repos/huggingface/datasets | https://api.github.com/repos/huggingface/datasets/issues/28/labels{/name} | https://api.github.com/repos/huggingface/datasets/issues/28/comments | https://api.github.com/repos/huggingface/datasets/issues/28/events | https://github.com/huggingface/datasets/pull/28 | 610,241,907 | MDExOlB1bGxSZXF1ZXN0NDExNzE5MTQy | 28 | [Circle ci] Adds circle ci config | {
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} | [] | null | [] | 1,588,266,215,000 | 1,588,276,269,000 | 1,588,276,268,000 | MEMBER | null | false | {
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} | @thomwolf can you take a look and set up circle ci on:
https://app.circleci.com/projects/project-dashboard/github/huggingface
I think for `nlp` only admins can set it up, which I guess is you :-) | {
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